Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069359.t1 | XP_003621048.1 | 96.3 | 218 | 8 | 0 | 1 | 218 | 419 | 636 | 5.20E-115 | 423.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069359.t1 | Q9LYR6 | 77.3 | 194 | 42 | 1 | 1 | 194 | 420 | 611 | 6.9e-84 | 311.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069359.t1 | G7KXR0 | 96.3 | 218 | 8 | 0 | 1 | 218 | 419 | 636 | 3.8e-115 | 423.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049346 | MS.gene069359 | 0.805488 | 1.30E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene069359 | 0.816105 | 6.56E-52 | -1.69E-46 |
| MS.gene050330 | MS.gene069359 | -0.805427 | 1.34E-49 | -1.69E-46 |
| MS.gene051626 | MS.gene069359 | 0.8135 | 2.48E-51 | -1.69E-46 |
| MS.gene051663 | MS.gene069359 | 0.807352 | 5.27E-50 | -1.69E-46 |
| MS.gene051789 | MS.gene069359 | 0.808774 | 2.63E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene069359 | 0.801924 | 7.16E-49 | -1.69E-46 |
| MS.gene052178 | MS.gene069359 | 0.805402 | 1.36E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene069359 | 0.823532 | 1.32E-53 | -1.69E-46 |
| MS.gene054942 | MS.gene069359 | 0.802698 | 4.96E-49 | -1.69E-46 |
| MS.gene055428 | MS.gene069359 | 0.800401 | 1.47E-48 | -1.69E-46 |
| MS.gene059518 | MS.gene069359 | 0.809682 | 1.68E-50 | -1.69E-46 |
| MS.gene060476 | MS.gene069359 | 0.837846 | 4.08E-57 | -1.69E-46 |
| MS.gene061049 | MS.gene069359 | 0.806082 | 9.78E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069359.t1 | MTR_7g006540 | 96.330 | 218 | 8 | 0 | 1 | 218 | 419 | 636 | 3.44e-153 | 439 |
| MS.gene069359.t1 | MTR_7g067010 | 41.237 | 194 | 109 | 2 | 1 | 194 | 373 | 561 | 5.67e-43 | 152 |
| MS.gene069359.t1 | MTR_3g112470 | 38.095 | 210 | 115 | 3 | 1 | 209 | 372 | 567 | 5.69e-43 | 152 |
| MS.gene069359.t1 | MTR_3g112460 | 36.620 | 213 | 120 | 3 | 1 | 212 | 372 | 570 | 1.05e-41 | 149 |
| MS.gene069359.t1 | MTR_4g015080 | 41.237 | 194 | 109 | 2 | 1 | 194 | 383 | 571 | 2.76e-41 | 147 |
| MS.gene069359.t1 | MTR_4g033310 | 41.667 | 192 | 101 | 4 | 6 | 193 | 302 | 486 | 1.19e-40 | 145 |
| MS.gene069359.t1 | MTR_4g033315 | 41.667 | 192 | 101 | 4 | 6 | 193 | 366 | 550 | 2.57e-40 | 145 |
| MS.gene069359.t1 | MTR_4g033310 | 41.667 | 192 | 101 | 4 | 6 | 193 | 366 | 550 | 2.57e-40 | 145 |
| MS.gene069359.t1 | MTR_7g111260 | 36.041 | 197 | 117 | 2 | 1 | 196 | 360 | 548 | 1.15e-39 | 143 |
| MS.gene069359.t1 | MTR_1g085090 | 36.364 | 198 | 117 | 2 | 1 | 197 | 360 | 549 | 4.85e-39 | 142 |
| MS.gene069359.t1 | MTR_8g038880 | 35.500 | 200 | 121 | 3 | 6 | 203 | 366 | 559 | 1.05e-38 | 140 |
| MS.gene069359.t1 | MTR_5g085850 | 38.220 | 191 | 103 | 3 | 7 | 197 | 384 | 559 | 4.31e-38 | 139 |
| MS.gene069359.t1 | MTR_4g033325 | 39.378 | 193 | 114 | 2 | 6 | 198 | 240 | 429 | 6.17e-38 | 136 |
| MS.gene069359.t1 | MTR_3g112450 | 37.321 | 209 | 115 | 4 | 3 | 209 | 375 | 569 | 7.58e-38 | 138 |
| MS.gene069359.t1 | MTR_3g462710 | 36.082 | 194 | 119 | 2 | 1 | 194 | 266 | 454 | 8.07e-38 | 137 |
| MS.gene069359.t1 | MTR_4g033325 | 39.378 | 193 | 114 | 2 | 6 | 198 | 266 | 455 | 8.52e-38 | 136 |
| MS.gene069359.t1 | MTR_3g069420 | 37.879 | 198 | 117 | 3 | 13 | 208 | 392 | 585 | 9.42e-38 | 138 |
| MS.gene069359.t1 | MTR_3g072300 | 38.974 | 195 | 111 | 4 | 4 | 196 | 375 | 563 | 9.43e-38 | 138 |
| MS.gene069359.t1 | MTR_3g100980 | 40.306 | 196 | 107 | 4 | 1 | 195 | 365 | 551 | 2.22e-37 | 137 |
| MS.gene069359.t1 | MTR_0294s0020 | 38.021 | 192 | 116 | 2 | 7 | 198 | 365 | 553 | 2.63e-37 | 136 |
| MS.gene069359.t1 | MTR_4g033325 | 39.378 | 193 | 114 | 2 | 6 | 198 | 364 | 553 | 2.63e-37 | 136 |
| MS.gene069359.t1 | MTR_3g100980 | 40.306 | 196 | 107 | 4 | 1 | 195 | 393 | 579 | 2.80e-37 | 137 |
| MS.gene069359.t1 | MTR_4g033385 | 38.462 | 195 | 113 | 3 | 6 | 198 | 267 | 456 | 3.64e-37 | 135 |
| MS.gene069359.t1 | MTR_3g462710 | 36.082 | 194 | 119 | 2 | 1 | 194 | 375 | 563 | 4.02e-37 | 136 |
| MS.gene069359.t1 | MTR_4g123537 | 32.883 | 222 | 138 | 3 | 1 | 219 | 384 | 597 | 5.91e-37 | 136 |
| MS.gene069359.t1 | MTR_3g014790 | 34.328 | 201 | 122 | 3 | 4 | 200 | 359 | 553 | 8.11e-37 | 135 |
| MS.gene069359.t1 | MTR_8g103233 | 42.162 | 185 | 104 | 2 | 7 | 191 | 372 | 553 | 1.36e-36 | 135 |
| MS.gene069359.t1 | MTR_2g017750 | 34.673 | 199 | 124 | 4 | 1 | 196 | 395 | 590 | 5.69e-36 | 133 |
| MS.gene069359.t1 | MTR_3g069440 | 33.684 | 190 | 122 | 2 | 6 | 195 | 384 | 569 | 1.23e-35 | 132 |
| MS.gene069359.t1 | MTR_8g469470 | 35.979 | 189 | 115 | 3 | 7 | 195 | 400 | 582 | 1.91e-35 | 132 |
| MS.gene069359.t1 | MTR_8g469310 | 36.410 | 195 | 120 | 3 | 1 | 194 | 380 | 571 | 9.49e-35 | 130 |
| MS.gene069359.t1 | MTR_5g038380 | 36.410 | 195 | 116 | 4 | 1 | 194 | 387 | 574 | 1.93e-34 | 129 |
| MS.gene069359.t1 | MTR_7g088790 | 34.359 | 195 | 122 | 3 | 1 | 194 | 383 | 572 | 2.11e-33 | 126 |
| MS.gene069359.t1 | MTR_7g088825 | 34.545 | 220 | 137 | 4 | 1 | 219 | 376 | 589 | 2.33e-33 | 126 |
| MS.gene069359.t1 | MTR_7g098200 | 33.010 | 206 | 134 | 2 | 14 | 219 | 277 | 478 | 2.84e-33 | 125 |
| MS.gene069359.t1 | MTR_4g033330 | 40.230 | 174 | 93 | 4 | 7 | 176 | 367 | 533 | 3.24e-33 | 125 |
| MS.gene069359.t1 | MTR_3g069500 | 31.579 | 190 | 116 | 2 | 6 | 195 | 386 | 561 | 3.25e-33 | 125 |
| MS.gene069359.t1 | MTR_3g005010 | 35.897 | 195 | 114 | 3 | 4 | 194 | 356 | 543 | 3.25e-33 | 125 |
| MS.gene069359.t1 | MTR_7g098200 | 32.864 | 213 | 137 | 3 | 9 | 219 | 384 | 592 | 1.16e-32 | 124 |
| MS.gene069359.t1 | MTR_7g098200 | 33.010 | 206 | 134 | 2 | 14 | 219 | 381 | 582 | 1.29e-32 | 124 |
| MS.gene069359.t1 | MTR_7g098230 | 33.175 | 211 | 131 | 5 | 7 | 215 | 379 | 581 | 1.83e-32 | 123 |
| MS.gene069359.t1 | MTR_7g098040 | 34.884 | 215 | 127 | 6 | 7 | 214 | 387 | 595 | 1.85e-32 | 124 |
| MS.gene069359.t1 | MTR_8g469480 | 36.082 | 194 | 118 | 3 | 1 | 194 | 397 | 584 | 3.00e-32 | 123 |
| MS.gene069359.t1 | MTR_4g011280 | 34.597 | 211 | 131 | 3 | 8 | 214 | 389 | 596 | 7.12e-32 | 122 |
| MS.gene069359.t1 | MTR_5g038060 | 36.957 | 184 | 110 | 3 | 11 | 194 | 400 | 577 | 2.00e-31 | 120 |
| MS.gene069359.t1 | MTR_4g107530 | 37.089 | 213 | 118 | 5 | 3 | 209 | 391 | 593 | 2.60e-31 | 120 |
| MS.gene069359.t1 | MTR_5g012270 | 33.161 | 193 | 124 | 2 | 8 | 200 | 391 | 578 | 2.62e-31 | 120 |
| MS.gene069359.t1 | MTR_4g107670 | 34.184 | 196 | 124 | 4 | 1 | 195 | 381 | 572 | 2.82e-31 | 120 |
| MS.gene069359.t1 | MTR_2g101650 | 37.173 | 191 | 113 | 3 | 3 | 191 | 378 | 563 | 3.77e-31 | 120 |
| MS.gene069359.t1 | MTR_7g065080 | 31.658 | 199 | 121 | 3 | 6 | 203 | 297 | 481 | 3.78e-31 | 119 |
| MS.gene069359.t1 | MTR_4g019580 | 31.915 | 188 | 120 | 2 | 7 | 194 | 390 | 569 | 4.93e-31 | 119 |
| MS.gene069359.t1 | MTR_7g065080 | 33.333 | 189 | 112 | 3 | 6 | 194 | 384 | 558 | 5.87e-31 | 119 |
| MS.gene069359.t1 | MTR_7g088820 | 30.909 | 220 | 139 | 5 | 1 | 212 | 269 | 483 | 1.10e-30 | 117 |
| MS.gene069359.t1 | MTR_2g101610 | 34.328 | 201 | 126 | 3 | 16 | 216 | 394 | 588 | 1.13e-30 | 119 |
| MS.gene069359.t1 | MTR_4g107510 | 36.453 | 203 | 106 | 6 | 3 | 194 | 394 | 584 | 1.17e-30 | 118 |
| MS.gene069359.t1 | MTR_2g101590 | 34.328 | 201 | 126 | 3 | 16 | 216 | 393 | 587 | 1.19e-30 | 119 |
| MS.gene069359.t1 | MTR_8g087780 | 40.201 | 199 | 114 | 4 | 1 | 196 | 380 | 576 | 1.50e-30 | 118 |
| MS.gene069359.t1 | MTR_7g088820 | 30.909 | 220 | 139 | 5 | 1 | 212 | 317 | 531 | 1.60e-30 | 117 |
| MS.gene069359.t1 | MTR_7g088820 | 30.909 | 220 | 139 | 5 | 1 | 212 | 379 | 593 | 1.89e-30 | 118 |
| MS.gene069359.t1 | MTR_5g038190 | 30.846 | 201 | 127 | 4 | 7 | 205 | 387 | 577 | 2.16e-30 | 117 |
| MS.gene069359.t1 | MTR_7g098180 | 36.022 | 186 | 113 | 3 | 9 | 193 | 389 | 569 | 2.49e-30 | 117 |
| MS.gene069359.t1 | MTR_7g098160 | 32.558 | 215 | 138 | 5 | 8 | 220 | 387 | 596 | 2.74e-30 | 117 |
| MS.gene069359.t1 | MTR_7g013270 | 35.751 | 193 | 113 | 4 | 1 | 192 | 442 | 624 | 4.06e-30 | 117 |
| MS.gene069359.t1 | MTR_8g087810 | 39.683 | 189 | 109 | 4 | 11 | 196 | 391 | 577 | 4.15e-30 | 117 |
| MS.gene069359.t1 | MTR_2g101560 | 35.567 | 194 | 113 | 4 | 16 | 203 | 394 | 581 | 4.30e-30 | 117 |
| MS.gene069359.t1 | MTR_4g107580 | 30.973 | 226 | 138 | 6 | 3 | 219 | 383 | 599 | 5.16e-30 | 117 |
| MS.gene069359.t1 | MTR_5g055000 | 33.182 | 220 | 138 | 5 | 1 | 216 | 369 | 583 | 7.69e-30 | 116 |
| MS.gene069359.t1 | MTR_5g012290 | 31.579 | 209 | 137 | 3 | 1 | 209 | 382 | 584 | 8.46e-30 | 116 |
| MS.gene069359.t1 | MTR_1g026740 | 40.314 | 191 | 111 | 2 | 1 | 191 | 366 | 553 | 9.87e-30 | 115 |
| MS.gene069359.t1 | MTR_1g075440 | 32.394 | 213 | 133 | 4 | 1 | 212 | 377 | 579 | 1.01e-29 | 115 |
| MS.gene069359.t1 | MTR_7g098090 | 33.168 | 202 | 129 | 4 | 8 | 207 | 392 | 589 | 1.08e-29 | 115 |
| MS.gene069359.t1 | MTR_2g005130 | 34.896 | 192 | 112 | 4 | 5 | 194 | 383 | 563 | 2.59e-29 | 114 |
| MS.gene069359.t1 | MTR_7g010820 | 34.975 | 203 | 131 | 1 | 1 | 203 | 379 | 580 | 3.76e-29 | 114 |
| MS.gene069359.t1 | MTR_7g005930 | 33.333 | 192 | 119 | 2 | 1 | 192 | 385 | 567 | 5.38e-29 | 114 |
| MS.gene069359.t1 | MTR_1g116930 | 33.854 | 192 | 118 | 2 | 1 | 192 | 373 | 555 | 5.56e-29 | 114 |
| MS.gene069359.t1 | MTR_7g098220 | 33.155 | 187 | 119 | 4 | 9 | 193 | 341 | 523 | 1.07e-28 | 112 |
| MS.gene069359.t1 | MTR_7g098220 | 33.155 | 187 | 119 | 4 | 9 | 193 | 385 | 567 | 1.27e-28 | 112 |
| MS.gene069359.t1 | MTR_4g024930 | 34.715 | 193 | 117 | 3 | 1 | 192 | 369 | 553 | 2.20e-28 | 112 |
| MS.gene069359.t1 | MTR_4g114340 | 35.567 | 194 | 118 | 3 | 1 | 194 | 373 | 559 | 4.25e-28 | 111 |
| MS.gene069359.t1 | MTR_6g008690 | 31.937 | 191 | 125 | 3 | 7 | 196 | 352 | 538 | 6.88e-28 | 110 |
| MS.gene069359.t1 | MTR_2g101640 | 32.663 | 199 | 125 | 3 | 8 | 203 | 382 | 574 | 9.67e-28 | 110 |
| MS.gene069359.t1 | MTR_1g026770 | 39.227 | 181 | 107 | 2 | 11 | 191 | 373 | 550 | 2.16e-26 | 106 |
| MS.gene069359.t1 | MTR_1g041835 | 35.052 | 194 | 120 | 3 | 4 | 196 | 378 | 566 | 6.91e-26 | 105 |
| MS.gene069359.t1 | MTR_1g042310 | 31.937 | 191 | 124 | 3 | 7 | 196 | 337 | 522 | 8.71e-26 | 104 |
| MS.gene069359.t1 | MTR_4g098800 | 32.642 | 193 | 119 | 3 | 1 | 192 | 456 | 638 | 9.03e-26 | 104 |
| MS.gene069359.t1 | MTR_4g098800 | 32.642 | 193 | 119 | 3 | 1 | 192 | 391 | 573 | 9.04e-26 | 104 |
| MS.gene069359.t1 | MTR_1g042310 | 31.937 | 191 | 124 | 3 | 7 | 196 | 344 | 529 | 9.43e-26 | 104 |
| MS.gene069359.t1 | MTR_1g042310 | 31.937 | 191 | 124 | 3 | 7 | 196 | 381 | 566 | 9.88e-26 | 104 |
| MS.gene069359.t1 | MTR_4g101380 | 32.338 | 201 | 130 | 3 | 8 | 208 | 392 | 586 | 1.27e-25 | 104 |
| MS.gene069359.t1 | MTR_1g041815 | 34.536 | 194 | 121 | 3 | 4 | 196 | 378 | 566 | 1.85e-25 | 103 |
| MS.gene069359.t1 | MTR_1g026750 | 37.696 | 191 | 116 | 2 | 1 | 191 | 367 | 554 | 2.50e-25 | 103 |
| MS.gene069359.t1 | MTR_5g014150 | 31.088 | 193 | 127 | 3 | 1 | 192 | 399 | 586 | 4.73e-25 | 102 |
| MS.gene069359.t1 | MTR_3g065350 | 39.669 | 121 | 65 | 1 | 1 | 121 | 43 | 155 | 6.03e-25 | 96.3 |
| MS.gene069359.t1 | MTR_1g057460 | 32.065 | 184 | 114 | 2 | 8 | 191 | 392 | 564 | 6.93e-25 | 102 |
| MS.gene069359.t1 | MTR_1g057460 | 32.065 | 184 | 114 | 2 | 8 | 191 | 321 | 493 | 1.12e-24 | 101 |
| MS.gene069359.t1 | MTR_1g041875 | 32.934 | 167 | 101 | 2 | 7 | 173 | 384 | 539 | 1.80e-24 | 100 |
| MS.gene069359.t1 | MTR_0236s0050 | 32.955 | 176 | 107 | 2 | 16 | 191 | 329 | 493 | 2.67e-24 | 100 |
| MS.gene069359.t1 | MTR_1g041885 | 31.638 | 177 | 110 | 2 | 1 | 177 | 331 | 496 | 1.63e-23 | 98.2 |
| MS.gene069359.t1 | MTR_1g009200 | 38.000 | 200 | 117 | 4 | 11 | 208 | 387 | 581 | 3.41e-23 | 97.4 |
| MS.gene069359.t1 | MTR_4g033375 | 39.394 | 132 | 79 | 1 | 6 | 137 | 368 | 498 | 6.22e-22 | 93.6 |
| MS.gene069359.t1 | MTR_4g033395 | 38.806 | 134 | 77 | 2 | 6 | 137 | 368 | 498 | 9.16e-21 | 90.1 |
| MS.gene069359.t1 | MTR_4g107610 | 29.688 | 192 | 125 | 5 | 13 | 202 | 397 | 580 | 2.34e-18 | 83.6 |
| MS.gene069359.t1 | MTR_7g052600 | 31.795 | 195 | 113 | 5 | 5 | 191 | 343 | 525 | 7.45e-18 | 82.0 |
| MS.gene069359.t1 | MTR_1g009170 | 34.756 | 164 | 98 | 2 | 10 | 173 | 203 | 357 | 8.81e-18 | 81.3 |
| MS.gene069359.t1 | MTR_7g051830 | 30.108 | 186 | 113 | 4 | 11 | 191 | 352 | 525 | 1.32e-17 | 81.3 |
| MS.gene069359.t1 | MTR_7g051880 | 30.108 | 186 | 113 | 4 | 11 | 191 | 352 | 525 | 1.46e-16 | 78.2 |
| MS.gene069359.t1 | MTR_2g093180 | 27.128 | 188 | 117 | 4 | 7 | 194 | 381 | 548 | 2.42e-16 | 77.4 |
| MS.gene069359.t1 | MTR_7g064780 | 28.061 | 196 | 126 | 6 | 2 | 191 | 381 | 567 | 2.51e-16 | 77.4 |
| MS.gene069359.t1 | MTR_7g098210 | 26.738 | 187 | 116 | 4 | 9 | 193 | 274 | 441 | 1.32e-15 | 75.1 |
| MS.gene069359.t1 | MTR_2g093640 | 25.000 | 188 | 121 | 4 | 7 | 194 | 380 | 547 | 1.46e-15 | 75.1 |
| MS.gene069359.t1 | MTR_4g033390 | 35.870 | 92 | 57 | 1 | 107 | 198 | 30 | 119 | 4.49e-15 | 69.3 |
| MS.gene069359.t1 | MTR_2g093160 | 27.848 | 158 | 97 | 2 | 37 | 194 | 407 | 547 | 1.20e-14 | 72.4 |
| MS.gene069359.t1 | MTR_7g064800 | 28.272 | 191 | 126 | 4 | 1 | 189 | 386 | 567 | 8.19e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069359.t1 | AT5G13400 | 77.320 | 194 | 42 | 1 | 1 | 194 | 420 | 611 | 2.39e-107 | 322 |
| MS.gene069359.t1 | AT5G01180 | 39.691 | 194 | 112 | 2 | 1 | 194 | 375 | 563 | 1.01e-40 | 146 |
| MS.gene069359.t1 | AT5G01180 | 39.691 | 194 | 112 | 2 | 1 | 194 | 375 | 563 | 1.01e-40 | 146 |
| MS.gene069359.t1 | AT5G01180 | 39.691 | 194 | 112 | 2 | 1 | 194 | 375 | 563 | 1.01e-40 | 146 |
| MS.gene069359.t1 | AT2G02040 | 41.667 | 192 | 108 | 3 | 3 | 194 | 394 | 581 | 9.71e-39 | 141 |
| MS.gene069359.t1 | AT3G54140 | 37.113 | 194 | 117 | 2 | 1 | 194 | 375 | 563 | 2.87e-37 | 137 |
| MS.gene069359.t1 | AT3G54140 | 37.113 | 194 | 117 | 2 | 1 | 194 | 375 | 563 | 2.87e-37 | 137 |
| MS.gene069359.t1 | AT3G54450 | 35.450 | 189 | 118 | 2 | 6 | 194 | 358 | 542 | 5.72e-37 | 135 |
| MS.gene069359.t1 | AT1G69870 | 35.047 | 214 | 131 | 4 | 7 | 220 | 413 | 618 | 1.43e-36 | 135 |
| MS.gene069359.t1 | AT3G53960 | 35.233 | 193 | 112 | 4 | 6 | 195 | 392 | 574 | 1.78e-36 | 135 |
| MS.gene069359.t1 | AT1G62200 | 40.110 | 182 | 97 | 3 | 3 | 184 | 408 | 577 | 6.27e-36 | 133 |
| MS.gene069359.t1 | AT1G62200 | 40.110 | 182 | 97 | 3 | 3 | 184 | 451 | 620 | 8.90e-36 | 133 |
| MS.gene069359.t1 | AT1G62200 | 40.110 | 182 | 97 | 3 | 3 | 184 | 437 | 606 | 1.07e-35 | 132 |
| MS.gene069359.t1 | AT2G02020 | 38.860 | 193 | 108 | 4 | 3 | 193 | 337 | 521 | 2.42e-35 | 131 |
| MS.gene069359.t1 | AT2G02020 | 38.860 | 193 | 108 | 4 | 3 | 193 | 358 | 542 | 2.61e-35 | 131 |
| MS.gene069359.t1 | AT2G40460 | 36.082 | 194 | 120 | 3 | 4 | 197 | 369 | 558 | 2.97e-35 | 131 |
| MS.gene069359.t1 | AT3G21670 | 37.895 | 190 | 103 | 2 | 7 | 196 | 386 | 560 | 5.82e-35 | 130 |
| MS.gene069359.t1 | AT1G72140 | 38.462 | 195 | 117 | 2 | 1 | 195 | 362 | 553 | 1.19e-34 | 129 |
| MS.gene069359.t1 | AT1G22550 | 37.566 | 189 | 115 | 2 | 6 | 194 | 374 | 559 | 2.55e-34 | 128 |
| MS.gene069359.t1 | AT1G69850 | 35.714 | 196 | 121 | 4 | 1 | 195 | 389 | 580 | 4.62e-34 | 128 |
| MS.gene069359.t1 | AT1G22540 | 36.170 | 188 | 117 | 2 | 4 | 191 | 365 | 549 | 5.80e-34 | 127 |
| MS.gene069359.t1 | AT1G27040 | 36.181 | 199 | 111 | 5 | 1 | 193 | 372 | 560 | 4.57e-33 | 125 |
| MS.gene069359.t1 | AT1G27040 | 36.181 | 199 | 111 | 5 | 1 | 193 | 368 | 556 | 4.93e-33 | 125 |
| MS.gene069359.t1 | AT1G27040 | 36.181 | 199 | 111 | 5 | 1 | 193 | 340 | 528 | 5.20e-33 | 124 |
| MS.gene069359.t1 | AT3G47960 | 36.126 | 191 | 116 | 3 | 6 | 194 | 422 | 608 | 6.30e-33 | 125 |
| MS.gene069359.t1 | AT1G72120 | 36.364 | 198 | 115 | 4 | 1 | 194 | 362 | 552 | 6.92e-32 | 122 |
| MS.gene069359.t1 | AT1G72130 | 33.673 | 196 | 120 | 4 | 4 | 199 | 235 | 420 | 7.37e-31 | 117 |
| MS.gene069359.t1 | AT1G72130 | 33.673 | 196 | 120 | 4 | 4 | 199 | 235 | 420 | 7.37e-31 | 117 |
| MS.gene069359.t1 | AT1G68570 | 33.831 | 201 | 129 | 3 | 1 | 200 | 347 | 544 | 7.94e-31 | 119 |
| MS.gene069359.t1 | AT1G68570 | 33.831 | 201 | 129 | 3 | 1 | 200 | 377 | 574 | 9.44e-31 | 119 |
| MS.gene069359.t1 | AT1G72130 | 33.673 | 196 | 120 | 4 | 4 | 199 | 353 | 538 | 2.24e-30 | 117 |
| MS.gene069359.t1 | AT5G62680 | 32.984 | 191 | 122 | 3 | 6 | 194 | 406 | 592 | 1.70e-29 | 115 |
| MS.gene069359.t1 | AT1G72125 | 33.838 | 198 | 128 | 2 | 1 | 198 | 366 | 560 | 2.36e-29 | 114 |
| MS.gene069359.t1 | AT1G22570 | 34.555 | 191 | 119 | 2 | 4 | 194 | 339 | 523 | 3.44e-29 | 114 |
| MS.gene069359.t1 | AT1G22570 | 34.555 | 191 | 119 | 2 | 4 | 194 | 376 | 560 | 3.60e-29 | 114 |
| MS.gene069359.t1 | AT1G33440 | 33.486 | 218 | 130 | 5 | 5 | 216 | 388 | 596 | 4.05e-29 | 114 |
| MS.gene069359.t1 | AT3G16180 | 37.864 | 206 | 112 | 5 | 13 | 207 | 391 | 591 | 4.55e-29 | 114 |
| MS.gene069359.t1 | AT5G62730 | 31.683 | 202 | 130 | 4 | 1 | 197 | 331 | 529 | 5.71e-29 | 113 |
| MS.gene069359.t1 | AT1G18880 | 32.653 | 196 | 124 | 3 | 3 | 194 | 375 | 566 | 6.44e-29 | 114 |
| MS.gene069359.t1 | AT5G62730 | 31.683 | 202 | 130 | 4 | 1 | 197 | 390 | 588 | 7.08e-29 | 113 |
| MS.gene069359.t1 | AT5G46050 | 35.928 | 167 | 103 | 2 | 4 | 170 | 266 | 428 | 1.11e-28 | 112 |
| MS.gene069359.t1 | AT1G32450 | 33.175 | 211 | 132 | 5 | 1 | 208 | 395 | 599 | 1.32e-28 | 112 |
| MS.gene069359.t1 | AT2G37900 | 32.105 | 190 | 117 | 3 | 6 | 195 | 311 | 488 | 1.72e-28 | 112 |
| MS.gene069359.t1 | AT1G52190 | 35.961 | 203 | 118 | 4 | 3 | 198 | 381 | 578 | 1.81e-28 | 112 |
| MS.gene069359.t1 | AT2G37900 | 32.105 | 190 | 117 | 3 | 6 | 195 | 390 | 567 | 1.98e-28 | 112 |
| MS.gene069359.t1 | AT2G26690 | 34.466 | 206 | 125 | 5 | 1 | 205 | 341 | 537 | 1.99e-28 | 112 |
| MS.gene069359.t1 | AT2G26690 | 34.466 | 206 | 125 | 5 | 1 | 205 | 374 | 570 | 2.02e-28 | 112 |
| MS.gene069359.t1 | AT2G26690 | 34.466 | 206 | 125 | 5 | 1 | 205 | 329 | 525 | 2.11e-28 | 112 |
| MS.gene069359.t1 | AT5G46050 | 35.928 | 167 | 103 | 2 | 4 | 170 | 378 | 540 | 2.67e-28 | 112 |
| MS.gene069359.t1 | AT3G01350 | 29.949 | 197 | 137 | 1 | 7 | 203 | 365 | 560 | 3.35e-28 | 111 |
| MS.gene069359.t1 | AT5G14940 | 28.866 | 194 | 127 | 3 | 7 | 197 | 359 | 544 | 3.98e-28 | 111 |
| MS.gene069359.t1 | AT5G46040 | 33.649 | 211 | 133 | 4 | 4 | 212 | 378 | 583 | 1.01e-27 | 110 |
| MS.gene069359.t1 | AT1G59740 | 34.426 | 183 | 109 | 3 | 5 | 186 | 397 | 569 | 1.95e-27 | 109 |
| MS.gene069359.t1 | AT1G27080 | 32.418 | 182 | 109 | 3 | 13 | 194 | 339 | 506 | 1.20e-26 | 107 |
| MS.gene069359.t1 | AT1G27080 | 31.383 | 188 | 115 | 3 | 7 | 194 | 375 | 548 | 1.39e-26 | 107 |
| MS.gene069359.t1 | AT1G69860 | 33.511 | 188 | 112 | 2 | 7 | 194 | 375 | 549 | 1.99e-26 | 106 |
| MS.gene069359.t1 | AT1G12110 | 31.250 | 208 | 134 | 4 | 1 | 208 | 384 | 582 | 4.11e-25 | 102 |
| MS.gene069359.t1 | AT4G21680 | 34.694 | 196 | 120 | 4 | 1 | 193 | 382 | 572 | 3.53e-24 | 100 |
| MS.gene069359.t1 | AT5G19640 | 31.282 | 195 | 112 | 4 | 1 | 192 | 407 | 582 | 4.89e-24 | 99.8 |
| MS.gene069359.t1 | AT3G25280 | 34.615 | 156 | 89 | 3 | 37 | 191 | 378 | 521 | 5.41e-22 | 94.0 |
| MS.gene069359.t1 | AT3G25260 | 30.000 | 190 | 108 | 5 | 5 | 191 | 348 | 515 | 1.94e-20 | 89.4 |
| MS.gene069359.t1 | AT3G45650 | 28.713 | 202 | 124 | 5 | 7 | 208 | 368 | 549 | 2.45e-20 | 89.4 |
| MS.gene069359.t1 | AT5G28470 | 28.495 | 186 | 123 | 4 | 13 | 197 | 383 | 559 | 3.52e-19 | 85.9 |
| MS.gene069359.t1 | AT3G45660 | 27.805 | 205 | 131 | 5 | 7 | 211 | 367 | 554 | 1.32e-18 | 84.3 |
| MS.gene069359.t1 | AT3G45660 | 27.805 | 205 | 131 | 5 | 7 | 211 | 367 | 554 | 1.32e-18 | 84.3 |
| MS.gene069359.t1 | AT5G11570 | 30.688 | 189 | 117 | 3 | 3 | 191 | 302 | 476 | 1.42e-18 | 84.0 |
| MS.gene069359.t1 | AT3G45660 | 27.805 | 205 | 131 | 5 | 7 | 211 | 388 | 575 | 1.44e-18 | 84.0 |
| MS.gene069359.t1 | AT5G28470 | 28.495 | 186 | 121 | 5 | 13 | 197 | 383 | 557 | 1.18e-17 | 81.3 |
| MS.gene069359.t1 | AT3G45680 | 26.738 | 187 | 115 | 5 | 22 | 207 | 390 | 555 | 8.70e-17 | 79.0 |
| MS.gene069359.t1 | AT3G45710 | 26.064 | 188 | 116 | 6 | 22 | 205 | 391 | 559 | 4.83e-16 | 76.6 |
| MS.gene069359.t1 | AT3G45720 | 28.495 | 186 | 111 | 7 | 9 | 194 | 377 | 540 | 1.84e-15 | 75.1 |
| MS.gene069359.t1 | AT3G45650 | 25.439 | 228 | 124 | 6 | 7 | 208 | 368 | 575 | 2.08e-15 | 74.7 |
| MS.gene069359.t1 | AT3G45700 | 25.500 | 200 | 123 | 6 | 9 | 204 | 369 | 546 | 4.68e-14 | 70.9 |
Find 27 sgRNAs with CRISPR-Local
Find 36 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCAAATTTAAGTGCTTAT+TGG | 0.163181 | 7.1:+87710673 | MS.gene069359:CDS |
| TTGATTCAATATTGCTTAAT+TGG | 0.195137 | 7.1:+87710699 | MS.gene069359:CDS |
| GAACATTAAACTTGACAATT+TGG | 0.199043 | 7.1:+87711046 | MS.gene069359:CDS |
| AACCAATAAGCACTTAAATT+TGG | 0.204333 | 7.1:-87710675 | None:intergenic |
| CAAAGAATTGGAATTGGTTT+AGG | 0.253602 | 7.1:+87710552 | MS.gene069359:CDS |
| GCTGCTTTAGCTGGTGGATT+AGG | 0.281571 | 7.1:+87710810 | MS.gene069359:CDS |
| TGAAAAGCGGTACAAAAGTT+TGG | 0.355525 | 7.1:-87710491 | None:intergenic |
| GCATCGCAGCTTCAAAGAAT+TGG | 0.376023 | 7.1:+87710540 | MS.gene069359:CDS |
| CAGATAAAAGACAAGAATCT+TGG | 0.379936 | 7.1:+87710886 | MS.gene069359:CDS |
| CAGCTTCAAAGAATTGGAAT+TGG | 0.381580 | 7.1:+87710546 | MS.gene069359:CDS |
| TCTGCTTATGCTGCTTTAGC+TGG | 0.393452 | 7.1:+87710801 | MS.gene069359:CDS |
| TTGACAATTTGGCAAACAAT+GGG | 0.463853 | 7.1:+87711057 | MS.gene069359:CDS |
| TAAGCACTTAAATTTGGCAT+TGG | 0.472247 | 7.1:-87710669 | None:intergenic |
| CCTGATGCTATGAAAAGTAT+TGG | 0.473797 | 7.1:+87710777 | MS.gene069359:CDS |
| CTTGACAATTTGGCAAACAA+TGG | 0.486435 | 7.1:+87711056 | MS.gene069359:CDS |
| GCTTATGCTGCTTTAGCTGG+TGG | 0.504449 | 7.1:+87710804 | MS.gene069359:CDS |
| ATGAGGAATACACTTAGGCC+TGG | 0.513514 | 7.1:-87710453 | None:intergenic |
| AAACATGTTGTGTCCTGTAT+TGG | 0.514522 | 7.1:-87711013 | None:intergenic |
| CAGCACATAGATACCAATAC+AGG | 0.538621 | 7.1:+87711000 | MS.gene069359:CDS |
| AGTGTTGTTAAATCTGCCAC+TGG | 0.556705 | 7.1:+87710858 | MS.gene069359:CDS |
| GACACAACATGTTTATGAGA+TGG | 0.562119 | 7.1:+87711022 | MS.gene069359:CDS |
| CTAATATGAGGAATACACTT+AGG | 0.566459 | 7.1:-87710458 | None:intergenic |
| GGTAATAGAGAGCTAATATG+AGG | 0.570895 | 7.1:-87710470 | None:intergenic |
| CGCATCACTGGTCATCCGCA+TGG | 0.596174 | 7.1:+87710516 | MS.gene069359:CDS |
| CCAGTGATGCGTTTGAAAAG+CGG | 0.602166 | 7.1:-87710504 | None:intergenic |
| TTGTCTCAAAACATCAACAC+TGG | 0.656717 | 7.1:+87710909 | MS.gene069359:CDS |
| TGAAGCTGCGATGCACCATG+CGG | 0.707890 | 7.1:-87710531 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATTCAATATTGCTTAAT+TGG | + | chr7.1:87710699-87710718 | MS.gene069359:CDS | 20.0% |
| ! | AACCAATAAGCACTTAAATT+TGG | - | chr7.1:87710678-87710697 | None:intergenic | 25.0% |
| ! | GAACATTAAACTTGACAATT+TGG | + | chr7.1:87711046-87711065 | MS.gene069359:CDS | 25.0% |
| !!! | GCAAGTTTGATTACTTTTAT+TGG | + | chr7.1:87710931-87710950 | MS.gene069359:CDS | 25.0% |
| CAGATAAAAGACAAGAATCT+TGG | + | chr7.1:87710886-87710905 | MS.gene069359:CDS | 30.0% | |
| CTAATATGAGGAATACACTT+AGG | - | chr7.1:87710461-87710480 | None:intergenic | 30.0% | |
| TAAGCACTTAAATTTGGCAT+TGG | - | chr7.1:87710672-87710691 | None:intergenic | 30.0% | |
| TGCCAAATTTAAGTGCTTAT+TGG | + | chr7.1:87710673-87710692 | MS.gene069359:CDS | 30.0% | |
| TTGACAATTTGGCAAACAAT+GGG | + | chr7.1:87711057-87711076 | MS.gene069359:CDS | 30.0% | |
| ! | CAAAGAATTGGAATTGGTTT+AGG | + | chr7.1:87710552-87710571 | MS.gene069359:CDS | 30.0% |
| ! | TCTTTTATCTGAATTTCCAG+TGG | - | chr7.1:87710877-87710896 | None:intergenic | 30.0% |
| ! | TTCGATTTTATCAGTTGCTT+GGG | + | chr7.1:87710578-87710597 | MS.gene069359:CDS | 30.0% |
| ! | TTTCGATTTTATCAGTTGCT+TGG | + | chr7.1:87710577-87710596 | MS.gene069359:CDS | 30.0% |
| !!! | ATTTTGCATTGTTGGTTTGT+TGG | + | chr7.1:87710734-87710753 | MS.gene069359:CDS | 30.0% |
| AAACATGTTGTGTCCTGTAT+TGG | - | chr7.1:87711016-87711035 | None:intergenic | 35.0% | |
| CAGCTTCAAAGAATTGGAAT+TGG | + | chr7.1:87710546-87710565 | MS.gene069359:CDS | 35.0% | |
| CTTGACAATTTGGCAAACAA+TGG | + | chr7.1:87711056-87711075 | MS.gene069359:CDS | 35.0% | |
| GACACAACATGTTTATGAGA+TGG | + | chr7.1:87711022-87711041 | MS.gene069359:CDS | 35.0% | |
| GGTAATAGAGAGCTAATATG+AGG | - | chr7.1:87710473-87710492 | None:intergenic | 35.0% | |
| TGAAAAGCGGTACAAAAGTT+TGG | - | chr7.1:87710494-87710513 | None:intergenic | 35.0% | |
| TTGTCTCAAAACATCAACAC+TGG | + | chr7.1:87710909-87710928 | MS.gene069359:CDS | 35.0% | |
| ! | CCAATACTTTTCATAGCATC+AGG | - | chr7.1:87710780-87710799 | None:intergenic | 35.0% |
| ! | CCTGATGCTATGAAAAGTAT+TGG | + | chr7.1:87710777-87710796 | MS.gene069359:CDS | 35.0% |
| !! | GCTGAAGTATTTTGCATTGT+TGG | + | chr7.1:87710726-87710745 | MS.gene069359:CDS | 35.0% |
| CAGCACATAGATACCAATAC+AGG | + | chr7.1:87711000-87711019 | MS.gene069359:CDS | 40.0% | |
| ! | AGTGTTGTTAAATCTGCCAC+TGG | + | chr7.1:87710858-87710877 | MS.gene069359:CDS | 40.0% |
| ACACTTAGGCCTGGAAAAAC+CGG | - | chr7.1:87710447-87710466 | None:intergenic | 45.0% | |
| ATGAGGAATACACTTAGGCC+TGG | - | chr7.1:87710456-87710475 | None:intergenic | 45.0% | |
| CCAGTGATGCGTTTGAAAAG+CGG | - | chr7.1:87710507-87710526 | None:intergenic | 45.0% | |
| GCATCGCAGCTTCAAAGAAT+TGG | + | chr7.1:87710540-87710559 | MS.gene069359:CDS | 45.0% | |
| !! | TCTGCTTATGCTGCTTTAGC+TGG | + | chr7.1:87710801-87710820 | MS.gene069359:CDS | 45.0% |
| !! | CCGCTTTTCAAACGCATCAC+TGG | + | chr7.1:87710504-87710523 | MS.gene069359:CDS | 50.0% |
| !! | GCTGCTTTAGCTGGTGGATT+AGG | + | chr7.1:87710810-87710829 | MS.gene069359:CDS | 50.0% |
| !! | GCTTATGCTGCTTTAGCTGG+TGG | + | chr7.1:87710804-87710823 | MS.gene069359:CDS | 50.0% |
| TGAAGCTGCGATGCACCATG+CGG | - | chr7.1:87710534-87710553 | None:intergenic | 55.0% | |
| CGCATCACTGGTCATCCGCA+TGG | + | chr7.1:87710516-87710535 | MS.gene069359:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 87710441 | 87711103 | 87710441 | ID=MS.gene069359 |
| chr7.1 | mRNA | 87710441 | 87711103 | 87710441 | ID=MS.gene069359.t1;Parent=MS.gene069359 |
| chr7.1 | exon | 87710441 | 87711103 | 87710441 | ID=MS.gene069359.t1.exon1;Parent=MS.gene069359.t1 |
| chr7.1 | CDS | 87710441 | 87711103 | 87710441 | ID=cds.MS.gene069359.t1;Parent=MS.gene069359.t1 |
| Gene Sequence |
| Protein sequence |
