Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070679.t1 | XP_003613054.1 | 90.9 | 176 | 14 | 1 | 3 | 176 | 53 | 228 | 4.50E-77 | 297.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070679.t1 | Q9FVC1 | 52.1 | 188 | 76 | 2 | 3 | 176 | 53 | 240 | 1.0e-37 | 157.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070679.t1 | G7JWF1 | 90.9 | 176 | 14 | 1 | 3 | 176 | 53 | 228 | 3.2e-77 | 297.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05188 | MS.gene070679 | 0.805955 | 1.04E-49 | -1.69E-46 |
| MS.gene058654 | MS.gene070679 | 0.802805 | 4.71E-49 | -1.69E-46 |
| MS.gene06010 | MS.gene070679 | 0.809781 | 1.60E-50 | -1.69E-46 |
| MS.gene06011 | MS.gene070679 | 0.835144 | 1.99E-56 | -1.69E-46 |
| MS.gene060869 | MS.gene070679 | 0.809674 | 1.68E-50 | -1.69E-46 |
| MS.gene060870 | MS.gene070679 | 0.803536 | 3.33E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene070679 | MS.gene85927 | PPI |
| MS.gene070679 | MS.gene010053 | PPI |
| MS.gene070679 | MS.gene55353 | PPI |
| MS.gene070679 | MS.gene53154 | PPI |
| MS.gene78610 | MS.gene070679 | PPI |
| MS.gene070679 | MS.gene061528 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070679.t1 | MTR_5g032150 | 90.909 | 176 | 14 | 1 | 3 | 176 | 53 | 228 | 2.24e-110 | 314 |
| MS.gene070679.t1 | MTR_5g032150 | 94.611 | 167 | 7 | 1 | 12 | 176 | 1 | 167 | 1.90e-109 | 309 |
| MS.gene070679.t1 | MTR_5g032520 | 82.857 | 175 | 29 | 1 | 3 | 176 | 53 | 227 | 2.61e-100 | 288 |
| MS.gene070679.t1 | MTR_5g066180 | 44.828 | 174 | 91 | 5 | 3 | 174 | 53 | 223 | 2.73e-31 | 113 |
| MS.gene070679.t1 | MTR_4g093970 | 39.655 | 174 | 88 | 4 | 3 | 174 | 79 | 237 | 2.36e-22 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070679.t1 | AT2G22540 | 58.511 | 188 | 64 | 3 | 3 | 176 | 53 | 240 | 6.31e-66 | 202 |
| MS.gene070679.t1 | AT2G22540 | 58.511 | 188 | 64 | 3 | 3 | 176 | 53 | 240 | 6.31e-66 | 202 |
| MS.gene070679.t1 | AT2G22540 | 60.335 | 179 | 57 | 3 | 12 | 176 | 57 | 235 | 3.60e-65 | 200 |
| MS.gene070679.t1 | AT4G24540 | 47.429 | 175 | 78 | 6 | 3 | 173 | 53 | 217 | 4.04e-38 | 130 |
Find 48 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAGAGGTCACTTGAAAT+TGG | 0.219701 | 5.3:-20769172 | MS.gene070679:CDS |
| GAATATTTCTAACCTTTCTT+TGG | 0.260465 | 5.3:+20769000 | None:intergenic |
| CCCTCATCTGCCTTAATTGA+TGG | 0.266278 | 5.3:+20769236 | None:intergenic |
| ACATTCCTTCAGCCGGCATA+TGG | 0.334671 | 5.3:+20767652 | None:intergenic |
| TATCTGAACTCTCATAATCT+TGG | 0.352501 | 5.3:+20767859 | None:intergenic |
| CTAAGAAGAGCCATCAATTA+AGG | 0.355623 | 5.3:-20769246 | MS.gene070679:CDS |
| TGTGGAAGAATTACAACAAT+TGG | 0.373590 | 5.3:-20769191 | MS.gene070679:CDS |
| CTCAAAGAACCTCGCAAAGC+TGG | 0.379678 | 5.3:-20769506 | MS.gene070679:CDS |
| ATCTGAACTCTCATAATCTT+GGG | 0.383551 | 5.3:+20767860 | None:intergenic |
| AGAACCGTCTCTTGAGTTGC+AGG | 0.416179 | 5.3:-20769482 | MS.gene070679:intron |
| TGGAGAGGTCACTTGAAATT+GGG | 0.419481 | 5.3:-20769171 | MS.gene070679:CDS |
| TCAGATACATCGCTCAAGTT+GGG | 0.436087 | 5.3:-20767843 | MS.gene070679:CDS |
| ATGATGGATCATAAGGTTGC+GGG | 0.443250 | 5.3:-20767987 | MS.gene070679:intron |
| AGGTCACTTGAAATTGGGTT+GGG | 0.472406 | 5.3:-20769166 | MS.gene070679:CDS |
| TTCAGATACATCGCTCAAGT+TGG | 0.479254 | 5.3:-20767844 | MS.gene070679:CDS |
| CATTCCTTCAGCCGGCATAT+GGG | 0.480333 | 5.3:+20767653 | None:intergenic |
| GAGGTCACTTGAAATTGGGT+TGG | 0.488246 | 5.3:-20769167 | MS.gene070679:CDS |
| GATCAATGATCTCCAAAGAA+AGG | 0.499633 | 5.3:-20769012 | MS.gene070679:intron |
| AGATCTTGAAAGTTTGAATG+TGG | 0.513484 | 5.3:-20769209 | MS.gene070679:CDS |
| ATCATACATGTTGCTTTAGT+CGG | 0.530014 | 5.3:+20768176 | None:intergenic |
| ATAATCTTGGGGAGGACCAA+TGG | 0.530085 | 5.3:+20767872 | None:intergenic |
| CCATCAATTAAGGCAGATGA+GGG | 0.555256 | 5.3:-20769236 | MS.gene070679:CDS |
| CACACAAACATTCCTTCAGC+CGG | 0.558090 | 5.3:+20767645 | None:intergenic |
| TATGAGAATGTGGTTAATGA+AGG | 0.563013 | 5.3:-20767930 | MS.gene070679:CDS |
| TCAGGGAGAGAAGATCATGA+TGG | 0.564270 | 5.3:-20769036 | MS.gene070679:intron |
| ATTTGCAGGCTCCCATATGC+CGG | 0.566203 | 5.3:-20767664 | MS.gene070679:intron |
| GGCTCCCATATGCCGGCTGA+AGG | 0.566587 | 5.3:-20767657 | None:intergenic |
| ATGATTAACGACAGAATGGT+TGG | 0.571480 | 5.3:-20767963 | MS.gene070679:CDS |
| GCCATCAATTAAGGCAGATG+AGG | 0.573391 | 5.3:-20769237 | MS.gene070679:CDS |
| ACCAACGTTTACAACTCCAT+TGG | 0.576740 | 5.3:-20767888 | MS.gene070679:CDS |
| GGGCATGATTAACGACAGAA+TGG | 0.581587 | 5.3:-20767967 | MS.gene070679:CDS |
| CCTGCAGGGAAGGCAACTGA+TGG | 0.581631 | 5.3:-20768209 | MS.gene070679:intron |
| AACGTTGGTGACAGATTCTG+AGG | 0.592708 | 5.3:+20767902 | None:intergenic |
| CAGATACATCGCTCAAGTTG+GGG | 0.603531 | 5.3:-20767842 | MS.gene070679:intron |
| ACGGTTCTTCCAGCTTTGCG+AGG | 0.603660 | 5.3:+20769497 | None:intergenic |
| GCGTGAGGGAAATACTTGAA+AGG | 0.613182 | 5.3:-20769540 | MS.gene070679:CDS |
| TGTGTTATGATGAAGCGTGA+GGG | 0.617556 | 5.3:-20769554 | MS.gene070679:intron |
| TCTGAACTCTCATAATCTTG+GGG | 0.621502 | 5.3:+20767861 | None:intergenic |
| GGGCCGTGTAATAGAAAACA+AGG | 0.627922 | 5.3:-20769146 | MS.gene070679:intron |
| AAGAATTACAACAATTGGAG+AGG | 0.631162 | 5.3:-20769186 | MS.gene070679:CDS |
| ATTAACGACAGAATGGTTGG+AGG | 0.640229 | 5.3:-20767960 | MS.gene070679:CDS |
| CAACTGTTCTAGATTGAGCA+AGG | 0.640451 | 5.3:-20769275 | MS.gene070679:CDS |
| CCAACCTGCAACTCAAGAGA+CGG | 0.649927 | 5.3:+20769478 | None:intergenic |
| ACCAATGGAGTTGTAAACGT+TGG | 0.652128 | 5.3:+20767887 | None:intergenic |
| AGGTGATGAATATGAGAATG+TGG | 0.655081 | 5.3:-20767940 | MS.gene070679:CDS |
| GAACTCTCATAATCTTGGGG+AGG | 0.658116 | 5.3:+20767864 | None:intergenic |
| TTTATATAGCTAATGTTACA+CGG | 0.681862 | 5.3:-20769911 | MS.gene070679:intron |
| CATCAATTAAGGCAGATGAG+GGG | 0.712596 | 5.3:-20769235 | MS.gene070679:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAACAAAAGTTTAAAAAT+AGG | - | chr5.3:20768871-20768890 | MS.gene070679:intron | 10.0% |
| !! | ATGTATTTGTAAAAAAAAAT+TGG | - | chr5.3:20768903-20768922 | MS.gene070679:intron | 10.0% |
| !! | AAAAAATTACTTGTATATGA+TGG | - | chr5.3:20769578-20769597 | MS.gene070679:intron | 15.0% |
| !! | AAAAATATCATGCAAATATT+GGG | + | chr5.3:20769526-20769545 | None:intergenic | 15.0% |
| !! | TAAAAATATCATGCAAATAT+TGG | + | chr5.3:20769527-20769546 | None:intergenic | 15.0% |
| !!! | AAAAAAAAAAAAGTACTAGT+AGG | + | chr5.3:20768473-20768492 | None:intergenic | 15.0% |
| !!! | AAAATATTGTTTTGTTTTTC+AGG | - | chr5.3:20768527-20768546 | MS.gene070679:intron | 15.0% |
| !!! | AAATATTGTTTTGTTTTTCA+GGG | - | chr5.3:20768528-20768547 | MS.gene070679:intron | 15.0% |
| !!! | AATGTTTTATTTGTTCATTT+TGG | + | chr5.3:20768191-20768210 | None:intergenic | 15.0% |
| !!! | ACTTTTACTAAAAATTGTAA+GGG | - | chr5.3:20768781-20768800 | MS.gene070679:intron | 15.0% |
| !!! | ATCATTCATTGTTATTTATT+TGG | - | chr5.3:20767984-20768003 | MS.gene070679:intron | 15.0% |
| !!! | TACTTTTACTAAAAATTGTA+AGG | - | chr5.3:20768780-20768799 | MS.gene070679:intron | 15.0% |
| !!! | TTTTTTTTTAACAATCAAAG+TGG | + | chr5.3:20768752-20768771 | None:intergenic | 15.0% |
| !! | AAATTAATTGTTGTCATGTT+GGG | - | chr5.3:20767702-20767721 | MS.gene070679:intron | 20.0% |
| !! | ACACAATTTAATGTATGAAT+TGG | + | chr5.3:20768844-20768863 | None:intergenic | 20.0% |
| !! | ACTCAACATGTTATATTAAT+TGG | - | chr5.3:20768610-20768629 | MS.gene070679:intron | 20.0% |
| !! | TAAATTAATTGTTGTCATGT+TGG | - | chr5.3:20767701-20767720 | MS.gene070679:intron | 20.0% |
| !! | TAAGTGAACTAATAATAATG+TGG | + | chr5.3:20769782-20769801 | None:intergenic | 20.0% |
| !! | TCAAAAAAGTTCCAATTAAA+CGG | - | chr5.3:20767933-20767952 | MS.gene070679:CDS | 20.0% |
| !! | TTTATATAGCTAATGTTACA+CGG | - | chr5.3:20767670-20767689 | MS.gene070679:intron | 20.0% |
| !!! | AATGTAGAATTTCTTTTTGA+AGG | - | chr5.3:20769819-20769838 | MS.gene070679:intron | 20.0% |
| !!! | AATTATGCTTAGTTTTGTAT+TGG | - | chr5.3:20769223-20769242 | MS.gene070679:CDS | 20.0% |
| !!! | AGGAAAAAAAAAGTAGATTT+TGG | - | chr5.3:20767801-20767820 | MS.gene070679:intron | 20.0% |
| !!! | AGGAATATCTTTTTATTTTG+AGG | - | chr5.3:20767834-20767853 | MS.gene070679:intron | 20.0% |
| !!! | AGTAAAAATTGGTTGTTTTA+GGG | + | chr5.3:20769349-20769368 | None:intergenic | 20.0% |
| !!! | TTTTATGACAATAAACAAAC+AGG | + | chr5.3:20767733-20767752 | None:intergenic | 20.0% |
| ! | AATTAATTGTTGTCATGTTG+GGG | - | chr5.3:20767703-20767722 | MS.gene070679:intron | 25.0% |
| ! | ATTTAATTAGATAGAGTCGA+TGG | - | chr5.3:20768642-20768661 | MS.gene070679:intron | 25.0% |
| ! | CAAAAAAGTTCCAATTAAAC+GGG | - | chr5.3:20767934-20767953 | MS.gene070679:CDS | 25.0% |
| ! | GAAGCTAATTTAGATATATG+TGG | + | chr5.3:20769303-20769322 | None:intergenic | 25.0% |
| ! | TTATTTGGTATAATTTGACC+TGG | - | chr5.3:20767999-20768018 | MS.gene070679:intron | 25.0% |
| !! | GAATATTTCTAACCTTTCTT+TGG | + | chr5.3:20768584-20768603 | None:intergenic | 25.0% |
| !! | GACGTCAATATTAACAATTT+TGG | + | chr5.3:20769045-20769064 | None:intergenic | 25.0% |
| !!! | AGATTTGTGAACAACTTTTT+TGG | + | chr5.3:20769005-20769024 | None:intergenic | 25.0% |
| !!! | CAGTAAAAATTGGTTGTTTT+AGG | + | chr5.3:20769350-20769369 | None:intergenic | 25.0% |
| !!! | TAGATTTTGGAAAAGCTATT+AGG | - | chr5.3:20767814-20767833 | MS.gene070679:intron | 25.0% |
| AAGAATTACAACAATTGGAG+AGG | - | chr5.3:20768395-20768414 | MS.gene070679:intron | 30.0% | |
| AGATCTTGAAAGTTTGAATG+TGG | - | chr5.3:20768372-20768391 | MS.gene070679:intron | 30.0% | |
| ATCTGAACTCTCATAATCTT+GGG | + | chr5.3:20769724-20769743 | None:intergenic | 30.0% | |
| TATCTGAACTCTCATAATCT+TGG | + | chr5.3:20769725-20769744 | None:intergenic | 30.0% | |
| TATGAGAATGTGGTTAATGA+AGG | - | chr5.3:20769651-20769670 | MS.gene070679:intron | 30.0% | |
| TCATCATAACACAAATATCC+AGG | + | chr5.3:20768020-20768039 | None:intergenic | 30.0% | |
| TCTAAAAAATGTTCCAAGGA+TGG | + | chr5.3:20768808-20768827 | None:intergenic | 30.0% | |
| TGTGGAAGAATTACAACAAT+TGG | - | chr5.3:20768390-20768409 | MS.gene070679:intron | 30.0% | |
| ! | CTTCTAAAAACAAAGAACAC+AGG | + | chr5.3:20767783-20767802 | None:intergenic | 30.0% |
| !! | ATCATACATGTTGCTTTAGT+CGG | + | chr5.3:20769408-20769427 | None:intergenic | 30.0% |
| !! | CTTGTATATGATGGATCATA+AGG | - | chr5.3:20769587-20769606 | MS.gene070679:intron | 30.0% |
| !!! | AGACCTTGTTTTCTATTACA+CGG | + | chr5.3:20768441-20768460 | None:intergenic | 30.0% |
| !!! | ATCCTTGGAACATTTTTTAG+AGG | - | chr5.3:20768807-20768826 | MS.gene070679:intron | 30.0% |
| !!! | CTGTGTTCTTTGTTTTTAGA+AGG | - | chr5.3:20767781-20767800 | MS.gene070679:intron | 30.0% |
| !!! | CTGTTGTTTTAGAAGATAGA+TGG | + | chr5.3:20769135-20769154 | None:intergenic | 30.0% |
| !!! | TGTTTTAGGGATGAAAGTAA+GGG | + | chr5.3:20769336-20769355 | None:intergenic | 30.0% |
| !!! | TTGTTTTAGGGATGAAAGTA+AGG | + | chr5.3:20769337-20769356 | None:intergenic | 30.0% |
| !!! | TTTGTGAACAACTTTTTTGG+TGG | + | chr5.3:20769002-20769021 | None:intergenic | 30.0% |
| ACATGATCGATGTCAACTTA+AGG | + | chr5.3:20767961-20767980 | None:intergenic | 35.0% | |
| AGGTGATGAATATGAGAATG+TGG | - | chr5.3:20769641-20769660 | MS.gene070679:intron | 35.0% | |
| ATGATTAACGACAGAATGGT+TGG | - | chr5.3:20769618-20769637 | MS.gene070679:intron | 35.0% | |
| CATGATCGATGTCAACTTAA+GGG | + | chr5.3:20767960-20767979 | None:intergenic | 35.0% | |
| CTAAGAAGAGCCATCAATTA+AGG | - | chr5.3:20768335-20768354 | MS.gene070679:intron | 35.0% | |
| GATCAATGATCTCCAAAGAA+AGG | - | chr5.3:20768569-20768588 | MS.gene070679:intron | 35.0% | |
| TAATTAGATAGAGTCGATGG+AGG | - | chr5.3:20768645-20768664 | MS.gene070679:intron | 35.0% | |
| TCTGAACTCTCATAATCTTG+GGG | + | chr5.3:20769723-20769742 | None:intergenic | 35.0% | |
| ! | CAATTTTTACTGAACCTGCA+GGG | - | chr5.3:20769358-20769377 | MS.gene070679:intron | 35.0% |
| ! | GACCTCTAAAAAATGTTCCA+AGG | + | chr5.3:20768812-20768831 | None:intergenic | 35.0% |
| !! | GTGTGTTTGAGTTTTCTAGT+CGG | - | chr5.3:20768958-20768977 | MS.gene070679:intron | 35.0% |
| !! | TATGATGGATCATAAGGTTG+CGG | - | chr5.3:20769593-20769612 | MS.gene070679:intron | 35.0% |
| AAAACTCACACACACAAGAG+GGG | + | chr5.3:20769094-20769113 | None:intergenic | 40.0% | |
| AAATTGTAAGGGTCCATCCT+TGG | - | chr5.3:20768792-20768811 | MS.gene070679:intron | 40.0% | |
| AACTTAAGGGCCCGTTTAAT+TGG | + | chr5.3:20767947-20767966 | None:intergenic | 40.0% | |
| ACCAACGTTTACAACTCCAT+TGG | - | chr5.3:20769693-20769712 | MS.gene070679:intron | 40.0% | |
| ACCAATGGAGTTGTAAACGT+TGG | + | chr5.3:20769697-20769716 | None:intergenic | 40.0% | |
| AGGTCACTTGAAATTGGGTT+GGG | - | chr5.3:20768415-20768434 | MS.gene070679:intron | 40.0% | |
| ATTAACGACAGAATGGTTGG+AGG | - | chr5.3:20769621-20769640 | MS.gene070679:intron | 40.0% | |
| CATCAATTAAGGCAGATGAG+GGG | - | chr5.3:20768346-20768365 | MS.gene070679:intron | 40.0% | |
| CCATCAATTAAGGCAGATGA+GGG | - | chr5.3:20768345-20768364 | MS.gene070679:intron | 40.0% | |
| CCTGCAGGTTCAGTAAAAAT+TGG | + | chr5.3:20769360-20769379 | None:intergenic | 40.0% | |
| CGCTTTCATGTACTATTTGC+AGG | - | chr5.3:20769903-20769922 | MS.gene070679:intron | 40.0% | |
| GAAAACTCACACACACAAGA+GGG | + | chr5.3:20769095-20769114 | None:intergenic | 40.0% | |
| TCAGATACATCGCTCAAGTT+GGG | - | chr5.3:20769738-20769757 | MS.gene070679:intron | 40.0% | |
| TGAAAACTCACACACACAAG+AGG | + | chr5.3:20769096-20769115 | None:intergenic | 40.0% | |
| TGGAGAGGTCACTTGAAATT+GGG | - | chr5.3:20768410-20768429 | MS.gene070679:intron | 40.0% | |
| TGTGTTATGATGAAGCGTGA+GGG | - | chr5.3:20768027-20768046 | MS.gene070679:intron | 40.0% | |
| TTCAGATACATCGCTCAAGT+TGG | - | chr5.3:20769737-20769756 | MS.gene070679:intron | 40.0% | |
| TTGGAGAGGTCACTTGAAAT+TGG | - | chr5.3:20768409-20768428 | MS.gene070679:intron | 40.0% | |
| TTGTGTTATGATGAAGCGTG+AGG | - | chr5.3:20768026-20768045 | MS.gene070679:intron | 40.0% | |
| ! | CAACTGTTCTAGATTGAGCA+AGG | - | chr5.3:20768306-20768325 | MS.gene070679:intron | 40.0% |
| ! | CCAATTTTTACTGAACCTGC+AGG | - | chr5.3:20769357-20769376 | MS.gene070679:intron | 40.0% |
| !! | ATGATGGATCATAAGGTTGC+GGG | - | chr5.3:20769594-20769613 | MS.gene070679:intron | 40.0% |
| ATAATCTTGGGGAGGACCAA+TGG | + | chr5.3:20769712-20769731 | None:intergenic | 45.0% | |
| CCCTCATCTGCCTTAATTGA+TGG | + | chr5.3:20768348-20768367 | None:intergenic | 45.0% | |
| GAACTCTCATAATCTTGGGG+AGG | + | chr5.3:20769720-20769739 | None:intergenic | 45.0% | |
| GAGGTCACTTGAAATTGGGT+TGG | - | chr5.3:20768414-20768433 | MS.gene070679:intron | 45.0% | |
| GCCATCAATTAAGGCAGATG+AGG | - | chr5.3:20768344-20768363 | MS.gene070679:intron | 45.0% | |
| GCGTGAGGGAAATACTTGAA+AGG | - | chr5.3:20768041-20768060 | MS.gene070679:intron | 45.0% | |
| GGGATGAAAGTAAGGGTTGT+AGG | + | chr5.3:20769329-20769348 | None:intergenic | 45.0% | |
| GGGCATGATTAACGACAGAA+TGG | - | chr5.3:20769614-20769633 | MS.gene070679:intron | 45.0% | |
| GGGCCGTGTAATAGAAAACA+AGG | - | chr5.3:20768435-20768454 | MS.gene070679:intron | 45.0% | |
| TCAGGGAGAGAAGATCATGA+TGG | - | chr5.3:20768545-20768564 | MS.gene070679:intron | 45.0% | |
| ! | CAGATACATCGCTCAAGTTG+GGG | - | chr5.3:20769739-20769758 | MS.gene070679:intron | 45.0% |
| ! | TTTTACTGAACCTGCAGGGA+AGG | - | chr5.3:20769362-20769381 | MS.gene070679:intron | 45.0% |
| !! | AACGTTGGTGACAGATTCTG+AGG | + | chr5.3:20769682-20769701 | None:intergenic | 45.0% |
| ACACACAAGAGGGGAATCTC+TGG | + | chr5.3:20769085-20769104 | None:intergenic | 50.0% | |
| ATTTGCAGGCTCCCATATGC+CGG | - | chr5.3:20769917-20769936 | MS.gene070679:CDS | 50.0% | |
| CCAACCTGCAACTCAAGAGA+CGG | + | chr5.3:20768106-20768125 | None:intergenic | 50.0% | |
| CTCAAAGAACCTCGCAAAGC+TGG | - | chr5.3:20768075-20768094 | MS.gene070679:intron | 50.0% | |
| ! | AGAACCGTCTCTTGAGTTGC+AGG | - | chr5.3:20768099-20768118 | MS.gene070679:intron | 50.0% |
| ACGGTTCTTCCAGCTTTGCG+AGG | + | chr5.3:20768087-20768106 | None:intergenic | 55.0% | |
| ! | CCGTCTCTTGAGTTGCAGGT+TGG | - | chr5.3:20768103-20768122 | MS.gene070679:intron | 55.0% |
| CCATCAGTTGCCTTCCCTGC+AGG | + | chr5.3:20769375-20769394 | None:intergenic | 60.0% | |
| CCTGCAGGGAAGGCAACTGA+TGG | - | chr5.3:20769372-20769391 | MS.gene070679:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 20767660 | 20769943 | 20767660 | ID=MS.gene070679 |
| chr5.3 | mRNA | 20767660 | 20769943 | 20767660 | ID=MS.gene070679.t1;Parent=MS.gene070679 |
| chr5.3 | exon | 20769912 | 20769943 | 20769912 | ID=MS.gene070679.t1.exon1;Parent=MS.gene070679.t1 |
| chr5.3 | CDS | 20769912 | 20769943 | 20769912 | ID=cds.MS.gene070679.t1;Parent=MS.gene070679.t1 |
| chr5.3 | exon | 20769483 | 20769561 | 20769483 | ID=MS.gene070679.t1.exon2;Parent=MS.gene070679.t1 |
| chr5.3 | CDS | 20769483 | 20769561 | 20769483 | ID=cds.MS.gene070679.t1;Parent=MS.gene070679.t1 |
| chr5.3 | exon | 20769147 | 20769311 | 20769147 | ID=MS.gene070679.t1.exon3;Parent=MS.gene070679.t1 |
| chr5.3 | CDS | 20769147 | 20769311 | 20769147 | ID=cds.MS.gene070679.t1;Parent=MS.gene070679.t1 |
| chr5.3 | exon | 20769013 | 20769054 | 20769013 | ID=MS.gene070679.t1.exon4;Parent=MS.gene070679.t1 |
| chr5.3 | CDS | 20769013 | 20769054 | 20769013 | ID=cds.MS.gene070679.t1;Parent=MS.gene070679.t1 |
| chr5.3 | exon | 20768183 | 20768224 | 20768183 | ID=MS.gene070679.t1.exon5;Parent=MS.gene070679.t1 |
| chr5.3 | CDS | 20768183 | 20768224 | 20768183 | ID=cds.MS.gene070679.t1;Parent=MS.gene070679.t1 |
| chr5.3 | exon | 20767843 | 20767994 | 20767843 | ID=MS.gene070679.t1.exon6;Parent=MS.gene070679.t1 |
| chr5.3 | CDS | 20767843 | 20767994 | 20767843 | ID=cds.MS.gene070679.t1;Parent=MS.gene070679.t1 |
| chr5.3 | exon | 20767660 | 20767678 | 20767660 | ID=MS.gene070679.t1.exon7;Parent=MS.gene070679.t1 |
| chr5.3 | CDS | 20767660 | 20767678 | 20767660 | ID=cds.MS.gene070679.t1;Parent=MS.gene070679.t1 |
| Gene Sequence |
| Protein sequence |
