AlfalfaGEDB | MS.gene070861

M. sativa cultivar XinJiangDaYe / MS.gene070861

KEGG: -
GO: GO:0003674 GO:0003824 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0016787 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564
PFAM: PF02902.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070861.t1	XP_024631762.1	90.6	381	34	1	1	379	159	539	8.20E-201	709.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070861.t1	A0A072TKK1	91.2	373	31	1	7	377	26	398	1.5e-199	704.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene070861	0.822038	2.93E-53	-1.69E-46
MS.gene051181	MS.gene070861	0.817808	2.72E-52	-1.69E-46
MS.gene051332	MS.gene070861	0.803743	3.01E-49	-1.69E-46
MS.gene051744	MS.gene070861	0.809986	1.44E-50	-1.69E-46
MS.gene052584	MS.gene070861	0.800341	1.51E-48	-1.69E-46
MS.gene054236	MS.gene070861	0.801434	9.02E-49	-1.69E-46
MS.gene055818	MS.gene070861	0.801235	9.91E-49	-1.69E-46
MS.gene056050	MS.gene070861	0.821872	3.20E-53	-1.69E-46
MS.gene056366	MS.gene070861	0.816737	4.74E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070861.t1	MTR_0002s1270	90.186	377	35	1	3	377	22	398	0.0	690
MS.gene070861.t1	MTR_7g046380	91.081	370	31	1	1	368	28	397	0.0	685
MS.gene070861.t1	MTR_5g077900	90.625	224	19	1	156	377	1	224	3.04e-154	434
MS.gene070861.t1	MTR_4g066310	74.020	204	36	2	1	202	11	199	4.47e-103	303
MS.gene070861.t1	MTR_2g092960	33.610	241	152	4	142	379	984	1219	1.29e-42	159
MS.gene070861.t1	MTR_2g092960	42.647	136	54	5	1	135	765	877	5.00e-17	83.6
MS.gene070861.t1	MTR_8g017000	35.897	234	139	5	151	379	462	689	1.05e-37	144
MS.gene070861.t1	MTR_0462s0020	32.669	251	149	6	137	375	49	291	1.78e-37	137
MS.gene070861.t1	MTR_2g037270	35.470	234	140	5	151	379	462	689	4.54e-37	142
MS.gene070861.t1	MTR_0057s0200	91.525	59	5	0	321	379	1	59	1.10e-35	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 72 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCACCTTTGTTCCACA+AGG	0.671776	6.4:+6289239	MS.gene070861:CDS
AACATGAGCCAAATACCGCA+AGG	0.641032	6.4:+6289720	MS.gene070861:CDS
AACTGTCTAATACAACTTCC+TGG	0.416621	6.4:-6289752	None:intergenic
AAGATATCGTCACGTCCTTG+TGG	0.594669	6.4:-6289254	None:intergenic
AATACTAAAACTAAAGTTCA+GGG	0.519185	6.4:+6290001	MS.gene070861:CDS
AATTTCTTCATTTGTTTGCA+AGG	0.411399	6.4:-6289540	None:intergenic
ACAAATAGATCGAAAGTGTT+TGG	0.322044	6.4:+6289935	MS.gene070861:CDS
ACAACTAAACTATTGTCCTT+GGG	0.519949	6.4:-6290193	None:intergenic
ACGTGACGATATCTTAACAA+GGG	0.719315	6.4:+6289262	MS.gene070861:CDS
ACTTACTTATATAGATATGG+TGG	0.631906	6.4:-6290070	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAGAACCATACTTACTT+TGG	-	chr6.4:6290426-6290445	None:intergenic	30.0%
ACAACTAAACTATTGTCCTT+GGG	-	chr6.4:6290196-6290215	None:intergenic	30.0%
ACAAGAACCATACTTACTTT+GGG	-	chr6.4:6290425-6290444	None:intergenic	30.0%
ATAAAAAACCTTGCGGTATT+TGG	-	chr6.4:6289731-6289750	None:intergenic	30.0%
ATATCTTAACAAGGGCAATT+GGG	+	chr6.4:6289270-6289289	MS.gene070861:CDS	30.0%
ATGCTAATGTTACTAAGTCT+TGG	+	chr6.4:6291295-6291314	MS.gene070861:CDS	30.0%
ATTATTTAGAAAGGGTAGTC+TGG	+	chr6.4:6290914-6290933	MS.gene070861:intron	30.0%
CAATCATACGGAAAATATAC+AGG	-	chr6.4:6290464-6290483	None:intergenic	30.0%
CTGGAAAAACTTAAGACTAT+GGG	+	chr6.4:6289506-6289525	MS.gene070861:CDS	30.0%
GATTAAAATCCAAGCATACT+GGG	-	chr6.4:6289970-6289989	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	6289215	6291516	6289215	ID=MS.gene070861
chr6.4	mRNA	6289215	6291516	6289215	ID=MS.gene070861.t1;Parent=MS.gene070861
chr6.4	exon	6289215	6289819	6289215	ID=MS.gene070861.t1.exon1;Parent=MS.gene070861.t1
chr6.4	CDS	6289215	6289819	6289215	ID=cds.MS.gene070861.t1;Parent=MS.gene070861.t1
chr6.4	exon	6289910	6290086	6289910	ID=MS.gene070861.t1.exon2;Parent=MS.gene070861.t1
chr6.4	CDS	6289910	6290086	6289910	ID=cds.MS.gene070861.t1;Parent=MS.gene070861.t1
chr6.4	exon	6290165	6290269	6290165	ID=MS.gene070861.t1.exon3;Parent=MS.gene070861.t1
chr6.4	CDS	6290165	6290269	6290165	ID=cds.MS.gene070861.t1;Parent=MS.gene070861.t1
chr6.4	exon	6290364	6290427	6290364	ID=MS.gene070861.t1.exon4;Parent=MS.gene070861.t1
chr6.4	CDS	6290364	6290427	6290364	ID=cds.MS.gene070861.t1;Parent=MS.gene070861.t1
chr6.4	exon	6291228	6291323	6291228	ID=MS.gene070861.t1.exon5;Parent=MS.gene070861.t1
chr6.4	CDS	6291228	6291323	6291228	ID=cds.MS.gene070861.t1;Parent=MS.gene070861.t1
chr6.4	exon	6291424	6291516	6291424	ID=MS.gene070861.t1.exon6;Parent=MS.gene070861.t1
chr6.4	CDS	6291424	6291516	6291424	ID=cds.MS.gene070861.t1;Parent=MS.gene070861.t1

Gene Sequence

>MS.gene070861

GATTCTCTAGTTGAAGAGACTGCCAAAGGCACCTTTGTTCCACAAGGACGTGACGATATCTTAACAAGGGCAATTGGGACGAAAGAGCATGGTGGTCGTGTTCGTGGTGTTGGACCTGGTTACACTCTGAGCAATTACTTTGGAAGGTCATCACGCCTTACCCAAACCATAGATGTTAACCAACATCTCTCACAACTTCAAACAAATCTGGAAAGACAACTTAAAGAAAAATTTGATGCACAATTTGAAGAAAAGATGGCCGTCGAACGTGAGTTGATGCAACAAGCATTTCTGGAAAAACTTAAGACTATGGGTTTCTCCCAAACCTTGCAAACAAATGAAGAAATTGAGCATAGTAGTCCTGAAAAAGTTGTTGTGCATGGAAGCACAAAAGGTTCTTGTACCGCTGCACAAGAAAATTACAAGGAGGACTTGACCATCAACAATGTTCAAAAATTGTTGTGCATGGTTTTGAGAAGTGAAGAAGATATACGCATACCATTAGAACATGAGCCAAATACCGCAAGGTTTTTTATTCCAGGAAGTTGTATTAGACAGTTGGGTAATGCTTGGCTTGACTTTTCTATTCTACAACTTTGGTGCACGTAAGTACATTTTCTTTTTTCCTATTATCAATATGGATTAGTAGTATATCCACAATTCAATATTTAAGTGTTAATTTTAAATTTGTCTAGGTGTATGCATCGTCTTTGTATCTCGACAAATAGATCGAAAGTGTTTGGGATTTTGGACCCAGTATGCTTGGATTTTAATCCAAAAGATCATAATACTAAAACTAAAGTTCAGGGACACATACAAACTAGGTTGCGTGATTTGAACAAAGTGTGTTACTTACCACCATATCTATATAAGTAAGTATATATTTAAATTATTTTTCTTATTTATCTTTGATAGCTTAAACCTTAATAATTGTTCTTCTACGTGTGCAGAAGACACTGGCAGTTAATAATTATTTGTCCCAAGGACAATAGTTTAGTTGTCCTTTGTTCAATGCACCAAGATCTTAATGAAGCAATGATTAAGATTGTTTCAAAGTAAGTGTATATTTTACGTTGCATTTGATATGTTACTTCCTACAGCACTAAAATGTATAACTTTGATGATTTTTTTAATTTGGTTAACATATAGAGCTTTAGAGGTTCATCAACTTGCTCAGGGCAATAGAAAGAAGGTTAAATGGTTTCGTCCCAAAGTAAGTATGGTTCTTGTTTATCCTTAATTGTTCCCTGTATATTTTCCGTATGATTGTTTCTTGTATTAAAAGTGGAATGTGTTTGTCTGTTGAACTCTGTTGAACTCTGTTGAACATGATCAAGATATGAATTCTTGTTTATCCTTTTACTGTACATTCACATGGTAGTGAAACAATATAATCTTGGAACTCTGTTGAACATGATTAAGATATGAATTCTTGTTTATCCTTTTATTCTTGTTTATCCTCCATAAAAAATTTACAATCTTCTCTCTCACTCAGTAGCTTAACATAGTTAGAAATAGTAGCCAATTGAAAACATATAGGTTTAGGGAAAAGCAAATTGTTGTCACCAAGGGTGTGTTTGTTTCTTAGCTGCTCCACTACTAAATCAATTAAGCTAGCATGTCTAATGCTAATTATAATGTGATGATATTATATGCTTATATAACAACATCTAAACTTTGAAAACAAGACTAAACTCAAATTATTTAGAAAGGGTAGTCTGGTAAAGTAAAAAAATTCACTGAGGTAGCTAGACTTAGCTTGATTACATTGGAACAGTTGTCCCATACAGAACAGAGTTAGATCTAGGATTTCATTACATTGACTCACATGCTTCTGCTTATAAAAAGCTGGAGAATATGTGTCTTTTTTACACTACTTAACCAATAATTCTTTTGTATAATACCTTCATGAATAGATACCGTTGTAAACTCAAGTCATTATAGAATGATAGATAATAAACTATTTTTTTTATATGAACTAATCACTTTATAAAAATGGTCATTCATTTGTAGCCAAGAAAGCAACCTAATGGCAATGATTGTGGATACTATGTGATGAAGAATATGCTAGATATCATCTATGCTAATGTTACTAAGTCTTGGATGGAGGTATTTTAATTTTATGATAACATGTTTATACTATATGTATTGTCAAATATAAACATATCCTTATTAATATTAATTACTTATATTAACCTACACATTGTAGGTCTTCAATGATCCAACGCCATTAACTGATGATGACTTATATGATTTGCGAAACCAATGGGCAACTTGTTTTCTTGACTTGTATAAGGCTTAG

Protein sequence

>MS.gene070861.t1

DSLVEETAKGTFVPQGRDDILTRAIGTKEHGGRVRGVGPGYTLSNYFGRSSRLTQTIDVNQHLSQLQTNLERQLKEKFDAQFEEKMAVERELMQQAFLEKLKTMGFSQTLQTNEEIEHSSPEKVVVHGSTKGSCTAAQENYKEDLTINNVQKLLCMVLRSEEDIRIPLEHEPNTARFFIPGSCIRQLGNAWLDFSILQLWCTCMHRLCISTNRSKVFGILDPVCLDFNPKDHNTKTKVQGHIQTRLRDLNKVCYLPPYLYKRHWQLIIICPKDNSLVVLCSMHQDLNEAMIKIVSKALEVHQLAQGNRKKVKWFRPKPRKQPNGNDCGYYVMKNMLDIIYANVTKSWMEVFNDPTPLTDDDLYDLRNQWATCFLDLYKA