Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070861.t1 | XP_024631762.1 | 90.6 | 381 | 34 | 1 | 1 | 379 | 159 | 539 | 8.20E-201 | 709.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070861.t1 | A0A072TKK1 | 91.2 | 373 | 31 | 1 | 7 | 377 | 26 | 398 | 1.5e-199 | 704.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene070861 | 0.822038 | 2.93E-53 | -1.69E-46 |
| MS.gene051181 | MS.gene070861 | 0.817808 | 2.72E-52 | -1.69E-46 |
| MS.gene051332 | MS.gene070861 | 0.803743 | 3.01E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene070861 | 0.809986 | 1.44E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene070861 | 0.800341 | 1.51E-48 | -1.69E-46 |
| MS.gene054236 | MS.gene070861 | 0.801434 | 9.02E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene070861 | 0.801235 | 9.91E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene070861 | 0.821872 | 3.20E-53 | -1.69E-46 |
| MS.gene056366 | MS.gene070861 | 0.816737 | 4.74E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070861.t1 | MTR_0002s1270 | 90.186 | 377 | 35 | 1 | 3 | 377 | 22 | 398 | 0.0 | 690 |
| MS.gene070861.t1 | MTR_7g046380 | 91.081 | 370 | 31 | 1 | 1 | 368 | 28 | 397 | 0.0 | 685 |
| MS.gene070861.t1 | MTR_5g077900 | 90.625 | 224 | 19 | 1 | 156 | 377 | 1 | 224 | 3.04e-154 | 434 |
| MS.gene070861.t1 | MTR_4g066310 | 74.020 | 204 | 36 | 2 | 1 | 202 | 11 | 199 | 4.47e-103 | 303 |
| MS.gene070861.t1 | MTR_2g092960 | 33.610 | 241 | 152 | 4 | 142 | 379 | 984 | 1219 | 1.29e-42 | 159 |
| MS.gene070861.t1 | MTR_2g092960 | 42.647 | 136 | 54 | 5 | 1 | 135 | 765 | 877 | 5.00e-17 | 83.6 |
| MS.gene070861.t1 | MTR_8g017000 | 35.897 | 234 | 139 | 5 | 151 | 379 | 462 | 689 | 1.05e-37 | 144 |
| MS.gene070861.t1 | MTR_0462s0020 | 32.669 | 251 | 149 | 6 | 137 | 375 | 49 | 291 | 1.78e-37 | 137 |
| MS.gene070861.t1 | MTR_2g037270 | 35.470 | 234 | 140 | 5 | 151 | 379 | 462 | 689 | 4.54e-37 | 142 |
| MS.gene070861.t1 | MTR_0057s0200 | 91.525 | 59 | 5 | 0 | 321 | 379 | 1 | 59 | 1.10e-35 | 125 |
| MS.gene070861.t1 | MTR_8g051620 | 51.887 | 106 | 49 | 1 | 156 | 259 | 1 | 106 | 5.98e-34 | 122 |
| MS.gene070861.t1 | MTR_8g051620 | 51.887 | 106 | 49 | 1 | 156 | 259 | 1 | 106 | 6.36e-34 | 122 |
| MS.gene070861.t1 | MTR_3g011560 | 33.190 | 232 | 135 | 5 | 151 | 379 | 462 | 676 | 1.26e-32 | 129 |
| MS.gene070861.t1 | MTR_4g066320 | 80.952 | 63 | 11 | 1 | 318 | 379 | 59 | 121 | 1.93e-31 | 115 |
| MS.gene070861.t1 | MTR_4g066320 | 89.130 | 46 | 5 | 0 | 86 | 131 | 1 | 46 | 3.98e-20 | 85.5 |
| MS.gene070861.t1 | MTR_3g028430 | 72.222 | 54 | 6 | 1 | 326 | 379 | 15 | 59 | 8.24e-19 | 80.1 |
| MS.gene070861.t1 | MTR_5g020725 | 86.486 | 37 | 5 | 0 | 1 | 37 | 14 | 50 | 5.61e-15 | 69.7 |
| MS.gene070861.t1 | MTR_4g066300 | 82.353 | 34 | 6 | 0 | 317 | 350 | 5 | 38 | 4.61e-13 | 63.9 |
| MS.gene070861.t1 | MTR_2g086200 | 56.000 | 50 | 22 | 0 | 330 | 379 | 185 | 234 | 7.86e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 72 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGAAAGTGTTTGGGATTT+TGG | 0.107550 | 6.4:+6289943 | MS.gene070861:CDS |
| GTTGATGCAACAAGCATTTC+TGG | 0.163725 | 6.4:+6289487 | MS.gene070861:CDS |
| CTTCATTTGTTTGCAAGGTT+TGG | 0.194841 | 6.4:-6289535 | None:intergenic |
| TTGCCATTAGGTTGCTTTCT+TGG | 0.248489 | 6.4:-6291228 | None:intergenic |
| TTCATTTGTTTGCAAGGTTT+GGG | 0.264022 | 6.4:-6289534 | None:intergenic |
| GCAATAGAAAGAAGGTTAAA+TGG | 0.271188 | 6.4:+6290393 | MS.gene070861:CDS |
| GGATTAAAATCCAAGCATAC+TGG | 0.319311 | 6.4:-6289968 | None:intergenic |
| ACAAATAGATCGAAAGTGTT+TGG | 0.322044 | 6.4:+6289935 | MS.gene070861:CDS |
| GAGATGTTGGTTAACATCTA+TGG | 0.327150 | 6.4:-6289381 | None:intergenic |
| GTTAACATATAGAGCTTTAG+AGG | 0.328169 | 6.4:+6290352 | MS.gene070861:intron |
| TCATTGCTTCATTAAGATCT+TGG | 0.330442 | 6.4:-6290231 | None:intergenic |
| CTCACAACTTCAAACAAATC+TGG | 0.342964 | 6.4:+6289403 | MS.gene070861:CDS |
| GTTGGTTAACATCTATGGTT+TGG | 0.350871 | 6.4:-6289376 | None:intergenic |
| TATAAGTCATCATCAGTTAA+TGG | 0.351177 | 6.4:-6291442 | None:intergenic |
| GATATCTTAACAAGGGCAAT+TGG | 0.355585 | 6.4:+6289269 | MS.gene070861:CDS |
| TCTTGACTTGTATAAGGCTT+AGG | 0.381448 | 6.4:+6291495 | MS.gene070861:CDS |
| TAATACTAAAACTAAAGTTC+AGG | 0.382008 | 6.4:+6290000 | MS.gene070861:CDS |
| CAAATAGATCGAAAGTGTTT+GGG | 0.382377 | 6.4:+6289936 | MS.gene070861:CDS |
| AGAGGTTCATCAACTTGCTC+AGG | 0.406730 | 6.4:+6290370 | MS.gene070861:CDS |
| GTATTTGGCTCATGTTCTAA+TGG | 0.408074 | 6.4:-6289713 | None:intergenic |
| GACAACTAAACTATTGTCCT+TGG | 0.409668 | 6.4:-6290194 | None:intergenic |
| AATTTCTTCATTTGTTTGCA+AGG | 0.411399 | 6.4:-6289540 | None:intergenic |
| TATCCACAATCATTGCCATT+AGG | 0.411955 | 6.4:-6291240 | None:intergenic |
| TATACTTACTTATATAGATA+TGG | 0.415179 | 6.4:-6290073 | None:intergenic |
| TTGGTTAACATCTATGGTTT+GGG | 0.415713 | 6.4:-6289375 | None:intergenic |
| AACTGTCTAATACAACTTCC+TGG | 0.416621 | 6.4:-6289752 | None:intergenic |
| TTGTGGAACAAAGGTGCCTT+TGG | 0.430612 | 6.4:-6289237 | None:intergenic |
| ATGCTAATGTTACTAAGTCT+TGG | 0.449281 | 6.4:+6291295 | MS.gene070861:CDS |
| GGTGGTCGTGTTCGTGGTGT+TGG | 0.450791 | 6.4:+6289305 | MS.gene070861:CDS |
| GTTGTGCATGGAAGCACAAA+AGG | 0.453705 | 6.4:+6289587 | MS.gene070861:CDS |
| CGTGTTCGTGGTGTTGGACC+TGG | 0.459171 | 6.4:+6289311 | MS.gene070861:CDS |
| TTTGAAGTTGTGAGAGATGT+TGG | 0.461931 | 6.4:-6289394 | None:intergenic |
| TGCACAATTTGAAGAAAAGA+TGG | 0.485981 | 6.4:+6289451 | MS.gene070861:CDS |
| ATATGATTTGCGAAACCAAT+GGG | 0.486055 | 6.4:+6291462 | MS.gene070861:CDS |
| AGGAAGTTGTATTAGACAGT+TGG | 0.489239 | 6.4:+6289754 | MS.gene070861:CDS |
| TTAGACAGTTGGGTAATGCT+TGG | 0.491323 | 6.4:+6289765 | MS.gene070861:CDS |
| CTCTGAGCAATTACTTTGGA+AGG | 0.492266 | 6.4:+6289339 | MS.gene070861:CDS |
| GGAAGTTGTATTAGACAGTT+GGG | 0.493846 | 6.4:+6289755 | MS.gene070861:CDS |
| TAGCCAAGAAAGCAACCTAA+TGG | 0.495668 | 6.4:+6291225 | MS.gene070861:intron |
| CAACCTAATGGCAATGATTG+TGG | 0.497368 | 6.4:+6291237 | MS.gene070861:CDS |
| TCATCATCAGTTAATGGCGT+TGG | 0.497730 | 6.4:-6291436 | None:intergenic |
| TACACTCTGAGCAATTACTT+TGG | 0.501754 | 6.4:+6289335 | MS.gene070861:CDS |
| CAAGAAAACAAGTTGCCCAT+TGG | 0.504204 | 6.4:-6291477 | None:intergenic |
| GTTAATAATTATTTGTCCCA+AGG | 0.509187 | 6.4:+6290177 | MS.gene070861:CDS |
| AATACTAAAACTAAAGTTCA+GGG | 0.519185 | 6.4:+6290001 | MS.gene070861:CDS |
| ATATCTTAACAAGGGCAATT+GGG | 0.519829 | 6.4:+6289270 | MS.gene070861:CDS |
| ACAACTAAACTATTGTCCTT+GGG | 0.519949 | 6.4:-6290193 | None:intergenic |
| TAACATCTATGGTTTGGGTA+AGG | 0.520225 | 6.4:-6289370 | None:intergenic |
| GAGCATGGTGGTCGTGTTCG+TGG | 0.528686 | 6.4:+6289299 | MS.gene070861:CDS |
| TGCTCAGGGCAATAGAAAGA+AGG | 0.550095 | 6.4:+6290385 | MS.gene070861:CDS |
| CGCTGCACAAGAAAATTACA+AGG | 0.553852 | 6.4:+6289619 | MS.gene070861:CDS |
| TTGCATCAACTCACGTTCGA+CGG | 0.556532 | 6.4:-6289474 | None:intergenic |
| GAGGTTCATCAACTTGCTCA+GGG | 0.558482 | 6.4:+6290371 | MS.gene070861:CDS |
| GATTAAAATCCAAGCATACT+GGG | 0.559851 | 6.4:-6289967 | None:intergenic |
| TATATGATTTGCGAAACCAA+TGG | 0.577102 | 6.4:+6291461 | MS.gene070861:CDS |
| AAGATATCGTCACGTCCTTG+TGG | 0.594669 | 6.4:-6289254 | None:intergenic |
| GATCTTGGTGCATTGAACAA+AGG | 0.604500 | 6.4:-6290216 | None:intergenic |
| TAATGTTACTAAGTCTTGGA+TGG | 0.608164 | 6.4:+6291299 | MS.gene070861:CDS |
| TTCAGGGACACATACAAACT+AGG | 0.610492 | 6.4:+6290017 | MS.gene070861:CDS |
| GCAATTGGGACGAAAGAGCA+TGG | 0.610861 | 6.4:+6289284 | MS.gene070861:CDS |
| GTCACGTCCTTGTGGAACAA+AGG | 0.611478 | 6.4:-6289246 | None:intergenic |
| TCTACGTGTGCAGAAGACAC+TGG | 0.621651 | 6.4:+6290152 | MS.gene070861:intron |
| ACTTACTTATATAGATATGG+TGG | 0.631906 | 6.4:-6290070 | None:intergenic |
| AACATGAGCCAAATACCGCA+AGG | 0.641032 | 6.4:+6289720 | MS.gene070861:CDS |
| TGTTACTAAGTCTTGGATGG+AGG | 0.641053 | 6.4:+6291302 | MS.gene070861:CDS |
| TAATTGCTCAGAGTGTAACC+AGG | 0.651954 | 6.4:-6289329 | None:intergenic |
| GACGTGACGATATCTTAACA+AGG | 0.664371 | 6.4:+6289261 | MS.gene070861:CDS |
| CTAGTTGAAGAGACTGCCAA+AGG | 0.667624 | 6.4:+6289221 | MS.gene070861:CDS |
| AAAGGCACCTTTGTTCCACA+AGG | 0.671776 | 6.4:+6289239 | MS.gene070861:CDS |
| ACGTGACGATATCTTAACAA+GGG | 0.719315 | 6.4:+6289262 | MS.gene070861:CDS |
| TGCACAAGAAAATTACAAGG+AGG | 0.749080 | 6.4:+6289622 | MS.gene070861:CDS |
| ATTGGGACGAAAGAGCATGG+TGG | 0.751315 | 6.4:+6289287 | MS.gene070861:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACTCAAATTATTTAGAAA+GGG | + | chr6.4:6290906-6290925 | MS.gene070861:intron | 15.0% |
| !! | AACTAATCACTTTATAAAAA+TGG | + | chr6.4:6291191-6291210 | MS.gene070861:intron | 15.0% |
| !! | GTATTATACAAAAGAATTAT+TGG | - | chr6.4:6291099-6291118 | None:intergenic | 15.0% |
| !! | TAAACTCAAATTATTTAGAA+AGG | + | chr6.4:6290905-6290924 | MS.gene070861:intron | 15.0% |
| !! | TATACTTACTTATATAGATA+TGG | - | chr6.4:6290076-6290095 | None:intergenic | 15.0% |
| !!! | AGAAGATTGTAAATTTTTTA+TGG | - | chr6.4:6290679-6290698 | None:intergenic | 15.0% |
| !!! | CTTTGATGATTTTTTTAATT+TGG | + | chr6.4:6290330-6290349 | MS.gene070861:intron | 15.0% |
| !!! | TGTTAATTTTAAATTTGTCT+AGG | + | chr6.4:6289888-6289907 | MS.gene070861:intron | 15.0% |
| !! | AACACTTAAATATTGAATTG+TGG | - | chr6.4:6289872-6289891 | None:intergenic | 20.0% |
| !! | AATACTAAAACTAAAGTTCA+GGG | + | chr6.4:6290001-6290020 | MS.gene070861:CDS | 20.0% |
| !! | AATTGAAAACATATAGGTTT+AGG | + | chr6.4:6290738-6290757 | MS.gene070861:intron | 20.0% |
| !! | ATTGAAAACATATAGGTTTA+GGG | + | chr6.4:6290739-6290758 | MS.gene070861:intron | 20.0% |
| !! | TAAAGTAAAAAAATTCACTG+AGG | + | chr6.4:6290937-6290956 | MS.gene070861:intron | 20.0% |
| !! | TAATACAAGAAACAATCATA+CGG | - | chr6.4:6290476-6290495 | None:intergenic | 20.0% |
| !! | TAATACTAAAACTAAAGTTC+AGG | + | chr6.4:6290000-6290019 | MS.gene070861:CDS | 20.0% |
| !!! | AGATTGTAAATTTTTTATGG+AGG | - | chr6.4:6290676-6290695 | None:intergenic | 20.0% |
| !!! | ATTGTTTCTTGTATTAAAAG+TGG | + | chr6.4:6290480-6290499 | MS.gene070861:intron | 20.0% |
| !!! | CTTTTTTCCTATTATCAATA+TGG | + | chr6.4:6289833-6289852 | MS.gene070861:intron | 20.0% |
| !!! | GTTTTAGTATTATGATCTTT+TGG | - | chr6.4:6289992-6290011 | None:intergenic | 20.0% |
| !!! | TAAACCTATATGTTTTCAAT+TGG | - | chr6.4:6290739-6290758 | None:intergenic | 20.0% |
| !!! | TACTAATCCATATTGATAAT+AGG | - | chr6.4:6289843-6289862 | None:intergenic | 20.0% |
| ! | AAATATACAGGGAACAATTA+AGG | - | chr6.4:6290452-6290471 | None:intergenic | 25.0% |
| ! | AATCATACGGAAAATATACA+GGG | - | chr6.4:6290463-6290482 | None:intergenic | 25.0% |
| ! | AATTTCTTCATTTGTTTGCA+AGG | - | chr6.4:6289543-6289562 | None:intergenic | 25.0% |
| ! | ACGTAGAAGAACAATTATTA+AGG | - | chr6.4:6290139-6290158 | None:intergenic | 25.0% |
| ! | ACTTACTTATATAGATATGG+TGG | - | chr6.4:6290073-6290092 | None:intergenic | 25.0% |
| ! | ATAATGACTTGAGTTTACAA+CGG | - | chr6.4:6291137-6291156 | None:intergenic | 25.0% |
| ! | GTAGTGAAACAATATAATCT+TGG | + | chr6.4:6290592-6290611 | MS.gene070861:intron | 25.0% |
| ! | GTTAATAATTATTTGTCCCA+AGG | + | chr6.4:6290177-6290196 | MS.gene070861:CDS | 25.0% |
| ! | TATAAGTCATCATCAGTTAA+TGG | - | chr6.4:6291445-6291464 | None:intergenic | 25.0% |
| ! | TATATTAACCTACACATTGT+AGG | + | chr6.4:6291402-6291421 | MS.gene070861:intron | 25.0% |
| !! | ACTTTTCTATTCTACAACTT+TGG | + | chr6.4:6289792-6289811 | MS.gene070861:CDS | 25.0% |
| !! | CAATTTTTGAACATTGTTGA+TGG | - | chr6.4:6289654-6289673 | None:intergenic | 25.0% |
| !! | TAGCTTAATTGATTTAGTAG+TGG | - | chr6.4:6290811-6290830 | None:intergenic | 25.0% |
| !!! | TTGTTTTCTTGACTTGTATA+AGG | + | chr6.4:6291489-6291508 | MS.gene070861:CDS | 25.0% |
| AACAAGAACCATACTTACTT+TGG | - | chr6.4:6290426-6290445 | None:intergenic | 30.0% | |
| ACAACTAAACTATTGTCCTT+GGG | - | chr6.4:6290196-6290215 | None:intergenic | 30.0% | |
| ACAAGAACCATACTTACTTT+GGG | - | chr6.4:6290425-6290444 | None:intergenic | 30.0% | |
| ATAAAAAACCTTGCGGTATT+TGG | - | chr6.4:6289731-6289750 | None:intergenic | 30.0% | |
| ATATCTTAACAAGGGCAATT+GGG | + | chr6.4:6289270-6289289 | MS.gene070861:CDS | 30.0% | |
| ATGCTAATGTTACTAAGTCT+TGG | + | chr6.4:6291295-6291314 | MS.gene070861:CDS | 30.0% | |
| ATTATTTAGAAAGGGTAGTC+TGG | + | chr6.4:6290914-6290933 | MS.gene070861:intron | 30.0% | |
| CAATCATACGGAAAATATAC+AGG | - | chr6.4:6290464-6290483 | None:intergenic | 30.0% | |
| CTGGAAAAACTTAAGACTAT+GGG | + | chr6.4:6289506-6289525 | MS.gene070861:CDS | 30.0% | |
| GATTAAAATCCAAGCATACT+GGG | - | chr6.4:6289970-6289989 | None:intergenic | 30.0% | |
| GCAATAGAAAGAAGGTTAAA+TGG | + | chr6.4:6290393-6290412 | MS.gene070861:CDS | 30.0% | |
| GGAGGATAAACAAGAATAAA+AGG | - | chr6.4:6290658-6290677 | None:intergenic | 30.0% | |
| GTAGCCAATTGAAAACATAT+AGG | + | chr6.4:6290732-6290751 | MS.gene070861:intron | 30.0% | |
| TAATGTTACTAAGTCTTGGA+TGG | + | chr6.4:6291299-6291318 | MS.gene070861:CDS | 30.0% | |
| TCATTGCTTCATTAAGATCT+TGG | - | chr6.4:6290234-6290253 | None:intergenic | 30.0% | |
| TCTGGAAAAACTTAAGACTA+TGG | + | chr6.4:6289505-6289524 | MS.gene070861:CDS | 30.0% | |
| TGCACAATTTGAAGAAAAGA+TGG | + | chr6.4:6289451-6289470 | MS.gene070861:CDS | 30.0% | |
| TGTTCAAAAATTGTTGTGCA+TGG | + | chr6.4:6289661-6289680 | MS.gene070861:CDS | 30.0% | |
| TTCATTTGTTTGCAAGGTTT+GGG | - | chr6.4:6289537-6289556 | None:intergenic | 30.0% | |
| TTGGTTAACATCTATGGTTT+GGG | - | chr6.4:6289378-6289397 | None:intergenic | 30.0% | |
| ! | ATATGATTTGCGAAACCAAT+GGG | + | chr6.4:6291462-6291481 | MS.gene070861:CDS | 30.0% |
| ! | GTTAACATATAGAGCTTTAG+AGG | + | chr6.4:6290352-6290371 | MS.gene070861:intron | 30.0% |
| ! | TAGACTTAGCTTGATTACAT+TGG | + | chr6.4:6290964-6290983 | MS.gene070861:intron | 30.0% |
| ! | TATATGATTTGCGAAACCAA+TGG | + | chr6.4:6291461-6291480 | MS.gene070861:CDS | 30.0% |
| !! | ACAAATAGATCGAAAGTGTT+TGG | + | chr6.4:6289935-6289954 | MS.gene070861:CDS | 30.0% |
| !! | CAAATAGATCGAAAGTGTTT+GGG | + | chr6.4:6289936-6289955 | MS.gene070861:CDS | 30.0% |
| !! | GTTATACATTTTAGTGCTGT+AGG | - | chr6.4:6290311-6290330 | None:intergenic | 30.0% |
| AAAGCAAATTGTTGTCACCA+AGG | + | chr6.4:6290763-6290782 | MS.gene070861:intron | 35.0% | |
| AACTGTCTAATACAACTTCC+TGG | - | chr6.4:6289755-6289774 | None:intergenic | 35.0% | |
| AAGCAAATTGTTGTCACCAA+GGG | + | chr6.4:6290764-6290783 | MS.gene070861:intron | 35.0% | |
| ACAACGGTATCTATTCATGA+AGG | - | chr6.4:6291121-6291140 | None:intergenic | 35.0% | |
| ACGTGACGATATCTTAACAA+GGG | + | chr6.4:6289262-6289281 | MS.gene070861:CDS | 35.0% | |
| AGATCTAACTCTGTTCTGTA+TGG | - | chr6.4:6291000-6291019 | None:intergenic | 35.0% | |
| AGGAAGTTGTATTAGACAGT+TGG | + | chr6.4:6289754-6289773 | MS.gene070861:CDS | 35.0% | |
| ATTGAAGACCTACAATGTGT+AGG | - | chr6.4:6291413-6291432 | None:intergenic | 35.0% | |
| CCATGTGAATGTACAGTAAA+AGG | - | chr6.4:6290573-6290592 | None:intergenic | 35.0% | |
| CTCACAACTTCAAACAAATC+TGG | + | chr6.4:6289403-6289422 | MS.gene070861:CDS | 35.0% | |
| CTTCATTTGTTTGCAAGGTT+TGG | - | chr6.4:6289538-6289557 | None:intergenic | 35.0% | |
| GACAACTAAACTATTGTCCT+TGG | - | chr6.4:6290197-6290216 | None:intergenic | 35.0% | |
| GATATCTTAACAAGGGCAAT+TGG | + | chr6.4:6289269-6289288 | MS.gene070861:CDS | 35.0% | |
| GATCTAACTCTGTTCTGTAT+GGG | - | chr6.4:6290999-6291018 | None:intergenic | 35.0% | |
| GGAAGTTGTATTAGACAGTT+GGG | + | chr6.4:6289755-6289774 | MS.gene070861:CDS | 35.0% | |
| GGATTAAAATCCAAGCATAC+TGG | - | chr6.4:6289971-6289990 | None:intergenic | 35.0% | |
| GTTGGTTAACATCTATGGTT+TGG | - | chr6.4:6289379-6289398 | None:intergenic | 35.0% | |
| TACACTCTGAGCAATTACTT+TGG | + | chr6.4:6289335-6289354 | MS.gene070861:CDS | 35.0% | |
| TACAGAACAGAGTTAGATCT+AGG | + | chr6.4:6291000-6291019 | MS.gene070861:intron | 35.0% | |
| TATCCACAATCATTGCCATT+AGG | - | chr6.4:6291243-6291262 | None:intergenic | 35.0% | |
| TCCTGGAATAAAAAACCTTG+CGG | - | chr6.4:6289738-6289757 | None:intergenic | 35.0% | |
| TGCACAAGAAAATTACAAGG+AGG | + | chr6.4:6289622-6289641 | MS.gene070861:CDS | 35.0% | |
| TGCTTCTGCTTATAAAAAGC+TGG | + | chr6.4:6291044-6291063 | MS.gene070861:intron | 35.0% | |
| ! | CCTTTTACTGTACATTCACA+TGG | + | chr6.4:6290570-6290589 | MS.gene070861:intron | 35.0% |
| ! | CTTGTAATTTTCTTGTGCAG+CGG | - | chr6.4:6289621-6289640 | None:intergenic | 35.0% |
| ! | GAGATGTTGGTTAACATCTA+TGG | - | chr6.4:6289384-6289403 | None:intergenic | 35.0% |
| ! | GTATTTGGCTCATGTTCTAA+TGG | - | chr6.4:6289716-6289735 | None:intergenic | 35.0% |
| ! | TAACATCTATGGTTTGGGTA+AGG | - | chr6.4:6289373-6289392 | None:intergenic | 35.0% |
| ! | TTTGAAGTTGTGAGAGATGT+TGG | - | chr6.4:6289397-6289416 | None:intergenic | 35.0% |
| !! | TCTTGACTTGTATAAGGCTT+AGG | + | chr6.4:6291495-6291514 | MS.gene070861:CDS | 35.0% |
| !!! | ATCGAAAGTGTTTGGGATTT+TGG | + | chr6.4:6289943-6289962 | MS.gene070861:CDS | 35.0% |
| CAACCTAATGGCAATGATTG+TGG | + | chr6.4:6291237-6291256 | MS.gene070861:CDS | 40.0% | |
| CAAGAAAACAAGTTGCCCAT+TGG | - | chr6.4:6291480-6291499 | None:intergenic | 40.0% | |
| CCTGAAAAAGTTGTTGTGCA+TGG | + | chr6.4:6289575-6289594 | MS.gene070861:CDS | 40.0% | |
| CGCTGCACAAGAAAATTACA+AGG | + | chr6.4:6289619-6289638 | MS.gene070861:CDS | 40.0% | |
| CTAAGAAACAAACACACCCT+TGG | - | chr6.4:6290783-6290802 | None:intergenic | 40.0% | |
| CTCTGAGCAATTACTTTGGA+AGG | + | chr6.4:6289339-6289358 | MS.gene070861:CDS | 40.0% | |
| GACGTGACGATATCTTAACA+AGG | + | chr6.4:6289261-6289280 | MS.gene070861:CDS | 40.0% | |
| GTTGATGCAACAAGCATTTC+TGG | + | chr6.4:6289487-6289506 | MS.gene070861:CDS | 40.0% | |
| GTTTCGTCCCAAAGTAAGTA+TGG | + | chr6.4:6290415-6290434 | MS.gene070861:intron | 40.0% | |
| TAATTGCTCAGAGTGTAACC+AGG | - | chr6.4:6289332-6289351 | None:intergenic | 40.0% | |
| TAGCCAAGAAAGCAACCTAA+TGG | + | chr6.4:6291225-6291244 | MS.gene070861:intron | 40.0% | |
| TCATCATCAGTTAATGGCGT+TGG | - | chr6.4:6291439-6291458 | None:intergenic | 40.0% | |
| TGTTACTAAGTCTTGGATGG+AGG | + | chr6.4:6291302-6291321 | MS.gene070861:CDS | 40.0% | |
| TTAGACAGTTGGGTAATGCT+TGG | + | chr6.4:6289765-6289784 | MS.gene070861:CDS | 40.0% | |
| TTCAGGGACACATACAAACT+AGG | + | chr6.4:6290017-6290036 | MS.gene070861:CDS | 40.0% | |
| ! | GATCTTGGTGCATTGAACAA+AGG | - | chr6.4:6290219-6290238 | None:intergenic | 40.0% |
| ! | TTGCCATTAGGTTGCTTTCT+TGG | - | chr6.4:6291231-6291250 | None:intergenic | 40.0% |
| !! | CCATGCACAACAACTTTTTC+AGG | - | chr6.4:6289578-6289597 | None:intergenic | 40.0% |
| !!! | ACCGCAAGGTTTTTTATTCC+AGG | + | chr6.4:6289734-6289753 | MS.gene070861:CDS | 40.0% |
| AACATGAGCCAAATACCGCA+AGG | + | chr6.4:6289720-6289739 | MS.gene070861:CDS | 45.0% | |
| AAGATATCGTCACGTCCTTG+TGG | - | chr6.4:6289257-6289276 | None:intergenic | 45.0% | |
| CTAGTTGAAGAGACTGCCAA+AGG | + | chr6.4:6289221-6289240 | MS.gene070861:CDS | 45.0% | |
| TGCTCAGGGCAATAGAAAGA+AGG | + | chr6.4:6290385-6290404 | MS.gene070861:CDS | 45.0% | |
| TTGCATCAACTCACGTTCGA+CGG | - | chr6.4:6289477-6289496 | None:intergenic | 45.0% | |
| ! | AGAGGTTCATCAACTTGCTC+AGG | + | chr6.4:6290370-6290389 | MS.gene070861:CDS | 45.0% |
| ! | GAGGTTCATCAACTTGCTCA+GGG | + | chr6.4:6290371-6290390 | MS.gene070861:CDS | 45.0% |
| ! | GATTTTGGACCCAGTATGCT+TGG | + | chr6.4:6289958-6289977 | MS.gene070861:CDS | 45.0% |
| ! | GTTGTGCATGGAAGCACAAA+AGG | + | chr6.4:6289587-6289606 | MS.gene070861:CDS | 45.0% |
| !! | AAAGGCACCTTTGTTCCACA+AGG | + | chr6.4:6289239-6289258 | MS.gene070861:CDS | 45.0% |
| !! | TTGTGGAACAAAGGTGCCTT+TGG | - | chr6.4:6289240-6289259 | None:intergenic | 45.0% |
| !! | ATAAGTAATTAATATTAATA+AGG | - | chr6.4:6291385-6291404 | None:intergenic | 5.0% |
| GCAATTGGGACGAAAGAGCA+TGG | + | chr6.4:6289284-6289303 | MS.gene070861:CDS | 50.0% | |
| GTCACGTCCTTGTGGAACAA+AGG | - | chr6.4:6289249-6289268 | None:intergenic | 50.0% | |
| TCTACGTGTGCAGAAGACAC+TGG | + | chr6.4:6290152-6290171 | MS.gene070861:intron | 50.0% | |
| ! | ATTGGGACGAAAGAGCATGG+TGG | + | chr6.4:6289287-6289306 | MS.gene070861:CDS | 50.0% |
| GAGCATGGTGGTCGTGTTCG+TGG | + | chr6.4:6289299-6289318 | MS.gene070861:CDS | 60.0% | |
| GGTGGTCGTGTTCGTGGTGT+TGG | + | chr6.4:6289305-6289324 | MS.gene070861:CDS | 60.0% | |
| ! | CGTGTTCGTGGTGTTGGACC+TGG | + | chr6.4:6289311-6289330 | MS.gene070861:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 6289215 | 6291516 | 6289215 | ID=MS.gene070861 |
| chr6.4 | mRNA | 6289215 | 6291516 | 6289215 | ID=MS.gene070861.t1;Parent=MS.gene070861 |
| chr6.4 | exon | 6289215 | 6289819 | 6289215 | ID=MS.gene070861.t1.exon1;Parent=MS.gene070861.t1 |
| chr6.4 | CDS | 6289215 | 6289819 | 6289215 | ID=cds.MS.gene070861.t1;Parent=MS.gene070861.t1 |
| chr6.4 | exon | 6289910 | 6290086 | 6289910 | ID=MS.gene070861.t1.exon2;Parent=MS.gene070861.t1 |
| chr6.4 | CDS | 6289910 | 6290086 | 6289910 | ID=cds.MS.gene070861.t1;Parent=MS.gene070861.t1 |
| chr6.4 | exon | 6290165 | 6290269 | 6290165 | ID=MS.gene070861.t1.exon3;Parent=MS.gene070861.t1 |
| chr6.4 | CDS | 6290165 | 6290269 | 6290165 | ID=cds.MS.gene070861.t1;Parent=MS.gene070861.t1 |
| chr6.4 | exon | 6290364 | 6290427 | 6290364 | ID=MS.gene070861.t1.exon4;Parent=MS.gene070861.t1 |
| chr6.4 | CDS | 6290364 | 6290427 | 6290364 | ID=cds.MS.gene070861.t1;Parent=MS.gene070861.t1 |
| chr6.4 | exon | 6291228 | 6291323 | 6291228 | ID=MS.gene070861.t1.exon5;Parent=MS.gene070861.t1 |
| chr6.4 | CDS | 6291228 | 6291323 | 6291228 | ID=cds.MS.gene070861.t1;Parent=MS.gene070861.t1 |
| chr6.4 | exon | 6291424 | 6291516 | 6291424 | ID=MS.gene070861.t1.exon6;Parent=MS.gene070861.t1 |
| chr6.4 | CDS | 6291424 | 6291516 | 6291424 | ID=cds.MS.gene070861.t1;Parent=MS.gene070861.t1 |
| Gene Sequence |
| Protein sequence |
