AlfalfaGEDB | MS.gene070960

M. sativa cultivar XinJiangDaYe / MS.gene070960

KEGG: -
GO: -
PFAM: PF00504.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070960.t1	XP_013469751.1	96.2	186	5	2	1	184	1	186	9.50E-86	326.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070960.t1	P11432	74.0	196	39	1	1	184	1	196	1.3e-70	267.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070960.t1	A0A072VP35	96.2	186	5	2	1	184	1	186	6.8e-86	326.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049356	MS.gene070960	0.810878	9.26E-51	-1.69E-46
MS.gene049369	MS.gene070960	0.800221	1.60E-48	-1.69E-46
MS.gene05081	MS.gene070960	0.819494	1.13E-52	-1.69E-46
MS.gene051734	MS.gene070960	0.835952	1.24E-56	-1.69E-46
MS.gene051838	MS.gene070960	0.803881	2.82E-49	-1.69E-46
MS.gene052188	MS.gene070960	0.809322	2.00E-50	-1.69E-46
MS.gene052469	MS.gene070960	0.833602	4.85E-56	-1.69E-46
MS.gene052870	MS.gene070960	0.853204	2.79E-61	-1.69E-46
MS.gene052872	MS.gene070960	0.850606	1.52E-60	-1.69E-46
MS.gene053449	MS.gene070960	0.810968	8.86E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070960.t1	MTR_1g102830	96.237	186	5	2	1	184	1	186	8.73e-126	352
MS.gene070960.t1	MTR_1g102810	93.491	169	10	1	17	184	14	182	5.72e-113	319
MS.gene070960.t1	MTR_1g102780	81.111	180	19	1	20	184	21	200	1.04e-98	284
MS.gene070960.t1	MTR_1g102570	79.775	178	23	1	20	184	21	198	3.27e-98	282
MS.gene070960.t1	MTR_1g102800	80.203	197	26	1	1	184	1	197	5.28e-98	282

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070960.t1	AT3G22840	50.000	192	77	3	7	184	9	195	3.47e-58	181
MS.gene070960.t1	AT4G14690	50.521	192	74	4	11	184	5	193	1.19e-53	169

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Find 46 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTTCCATTGATTCTTTC+AGG	0.165068	1.4:-79525716	None:intergenic
AAGCTAGGCATATACATAGA+AGG	0.387722	1.4:-79524988	None:intergenic
AATGGAAGACTTGCTATGTT+GGG	0.502682	1.4:+79525941	MS.gene070960:CDS
AATGGAAGGTTAGCCATGAT+TGG	0.409893	1.4:+79525728	MS.gene070960:CDS
ACACTAACACCTTCAAATAA+TGG	0.346554	1.4:-79525872	None:intergenic
ACACTTGTATACAAGAACCA+TGG	0.618963	1.4:-79525824	None:intergenic
AGCTAGGCATATACATAGAA+GGG	0.567045	1.4:-79524987	None:intergenic
AGGGCAGAAAGAGCAACCAA+AGG	0.630670	1.4:+79525277	MS.gene070960:CDS
AGTGTTGAATCTAAGTCAAA+AGG	0.480583	1.4:+79525890	MS.gene070960:CDS
ATAAAACTCTACTTACACAA+GGG	0.707854	1.4:-79526005	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTGAAAATCACACCTTA+AGG	-	chr1.4:79525407-79525426	None:intergenic	30.0%
ACACTAACACCTTCAAATAA+TGG	-	chr1.4:79525875-79525894	None:intergenic	30.0%
TAGAAGGGATGTTGTTAAAT+TGG	-	chr1.4:79524975-79524994	None:intergenic	30.0%
TAGTTTGAAAGTTCGATCTA+TGG	+	chr1.4:79525023-79525042	MS.gene070960:CDS	30.0%
TTACATGACTATACTCTTCT+TGG	-	chr1.4:79525586-79525605	None:intergenic	30.0%
AAGCTAGGCATATACATAGA+AGG	-	chr1.4:79524991-79525010	None:intergenic	35.0%
AAGTGACATTCAAGACGTTA+TGG	-	chr1.4:79525222-79525241	None:intergenic	35.0%
ACACCTTCCTAAAAGTAAGT+TGG	+	chr1.4:79525449-79525468	MS.gene070960:intron	35.0%
ACACTTGTATACAAGAACCA+TGG	-	chr1.4:79525827-79525846	None:intergenic	35.0%
AGCTAGGCATATACATAGAA+GGG	-	chr1.4:79524990-79525009	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	79524901	79526015	79524901	ID=MS.gene070960
chr1.4	mRNA	79524901	79526015	79524901	ID=MS.gene070960.t1;Parent=MS.gene070960
chr1.4	exon	79524901	79525050	79524901	ID=MS.gene070960.t1.exon1;Parent=MS.gene070960.t1
chr1.4	CDS	79524901	79525050	79524901	ID=cds.MS.gene070960.t1;Parent=MS.gene070960.t1
chr1.4	exon	79525275	79525334	79525275	ID=MS.gene070960.t1.exon2;Parent=MS.gene070960.t1
chr1.4	CDS	79525275	79525334	79525275	ID=cds.MS.gene070960.t1;Parent=MS.gene070960.t1
chr1.4	exon	79525671	79526015	79525671	ID=MS.gene070960.t1.exon3;Parent=MS.gene070960.t1
chr1.4	CDS	79525671	79526015	79525671	ID=cds.MS.gene070960.t1;Parent=MS.gene070960.t1

Gene Sequence

>MS.gene070960

ATGGCTGTTTCATCTTGTCAATCTATCATGTCAAGCTCCATGACCAGCATTTCAAGCAGGCCTAGAGTTAACCAATTTAACAACATCCCTTCTATGTATATGCCTAGCTTCAGAAGGAATGCTAGTTTGAAAGTTCGATCTATGGCTGAGGTAATTAAGGTTTATCAAACAAATATTAAGGTCATGTACATAGTGTTTGTTTTGTTCATGCATAATTAATTTGTATACATGAAAAAGCAATCATATGAAACATGTTTATGGTTTATATTTATGAAATATGTACATGAATTGTAGTTGATTTTGTAAATTCCGGAGAATCCATAACGTCTTGAATGTCACTTTAGTTGATAACAATGTTTCTTTACATTATTCAGGAAGGGCAGAAAGAGCAACCAAAGGTGACTCCTCAGCCTGCTTCTACTCGTTCACCAAAGGTAAGCATCATAATAAAAAAAGGGTTAGGTTACAAGCCACCCTTTGGTGGTGTCTTTTATCAAGCCACACCTTAAGGTGTGATTTTCACTTTTTAGTTATAACTTTGATAAAAGACACCTTCCTAAAAGTAAGTTGGTGTCTTTTCGCAAATGCTCACAGAGTAACTTGATAAAAGACACCTTCATAAAAGGTGTCTTCTATCATAACCCATCAAAAAATTACAACTTTGTTTTTTCCAAAATTGTGTCCAAGAAGAGTATAGTCATGTAAAGTATTGATTTTGGTCAAAATTTATGAGACTTTTATGATGAATAATGATGATTATATAATCGCAGATAAGCACAAAATTTTCGGATTTGATGGCATTTGGTGGGGCAGCGCCTGAAAGAATCAATGGAAGGTTAGCCATGATTGGTTTTGTATCTGCAATGGGGGTGGAATTAGCAAAAGGGCAGGGTTTGTTCGATCAAATATCTGGTGGTGGAATCCCATGGTTCTTGTATACAAGTGTGTTGTTGACAGTTGCTTCTTTGGTTCCATTATTTGAAGGTGTTAGTGTTGAATCTAAGTCAAAAGGTATCATGTCCTCAAATGCAGAGCTTTGGAATGGAAGACTTGCTATGTTGGGTTTGATTGCTTTGGCTGTCACAGAATATGTCAAGGGTACTGCCCTTGTGTAA

Protein sequence

>MS.gene070960.t1

MAVSSCQSIMSSSMTSISSRPRVNQFNNIPSMYMPSFRRNASLKVRSMAEEGQKEQPKVTPQPASTRSPKISTKFSDLMAFGGAAPERINGRLAMIGFVSAMGVELAKGQGLFDQISGGGIPWFLYTSVLLTVASLVPLFEGVSVESKSKGIMSSNAELWNGRLAMLGLIALAVTEYVKGTALV