AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05081


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05081.t1 MTR_3g063240 91.743 327 27 0 1 327 1 327 0.0 603
MS.gene05081.t1 MTR_3g063250 89.441 322 33 1 7 327 79 400 0.0 527
MS.gene05081.t1 MTR_3g063250 88.235 289 33 1 7 294 79 367 3.53e-164 462
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05081.t1 AT3G02690 72.555 317 83 2 7 322 99 412 8.02e-154 438

Find 89 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTCGATGCTGCTTGCTTTC+AGG 0.034711 3.4:-65427193 MS.gene05081:CDS
TAATATCGCCGTTCTTCTTC+TGG 0.156426 3.4:-65427386 MS.gene05081:CDS
TTATTTGCGGCTTTGCTATT+TGG 0.194318 3.4:-65426456 MS.gene05081:CDS
CAACGATAGTTGAAGGGTTA+TGG 0.279629 3.4:-65427422 MS.gene05081:CDS
GTCGATGCTGCTTGCTTTCA+GGG 0.294962 3.4:-65427192 MS.gene05081:CDS
AGCATCGACGAGAGCAAATA+TGG 0.297028 3.4:+65427206 None:intergenic
TTCCTTCTGGCTTCCATGCT+TGG 0.297169 3.4:-65427239 MS.gene05081:CDS
TATTTCAGGTTTCTGTATCT+TGG 0.302197 3.4:-65424809 MS.gene05081:intron
AGAGGAAGGGCGTTTCCTTC+TGG 0.304509 3.4:-65427252 MS.gene05081:CDS
TTGCTATTTGGCGAGTCTAT+TGG 0.312845 3.4:-65426444 MS.gene05081:CDS
AGTTGGTCCCATCATTTGAT+AGG 0.337361 3.4:+65426088 None:intergenic
GGAGAAAACTTCAGCCGGTT+TGG 0.344314 3.4:-65427151 MS.gene05081:CDS
GGCGAGTCTATTGGAATTGT+TGG 0.344856 3.4:-65426435 MS.gene05081:CDS
CATCTTCTTCTGCACTTAAG+AGG 0.346078 3.4:+65427475 None:intergenic
AATATCGCCGTTCTTCTTCT+GGG 0.346517 3.4:-65427385 MS.gene05081:CDS
TTCTCACCTGTACAGCTTGT+TGG 0.357565 3.4:-65424779 MS.gene05081:CDS
GAGAAAACTTCAGCCGGTTT+GGG 0.377380 3.4:-65427150 MS.gene05081:CDS
GGGCTTGTACTTGGTGTTGT+AGG 0.380113 3.4:-65426405 MS.gene05081:CDS
TCCTTTCGTCTCATTCCTGC+CGG 0.393122 3.4:-65427303 MS.gene05081:CDS
CTTCTTCTGGGGCACTTCCA+TGG 0.396917 3.4:-65427373 MS.gene05081:CDS
TTTGACAGTGGCTTTATTTG+CGG 0.411466 3.4:-65426469 MS.gene05081:CDS
AACGATAGTTGAAGGGTTAT+GGG 0.412873 3.4:-65427421 MS.gene05081:CDS
ATTGGAATTGTTGGAGCTGC+CGG 0.417641 3.4:-65426426 MS.gene05081:CDS
GGAGCTGCCGGGCTTGTACT+TGG 0.418936 3.4:-65426414 MS.gene05081:CDS
TGTGGGGAAGTGGGGAGTTG+TGG 0.428196 3.4:-65426059 MS.gene05081:CDS
AACAACGACCCTGCTGTAAG+TGG 0.430978 3.4:-65425682 MS.gene05081:CDS
ACCCATCCAGTTGCCATGAT+AGG 0.438828 3.4:+65425967 None:intergenic
AACTTCTCACTGTGGGGAAG+TGG 0.449426 3.4:-65426069 MS.gene05081:CDS
GTACAGTTCAACTGATGTAT+TGG 0.457095 3.4:-65425647 MS.gene05081:CDS
TTACAGCATATGGTTATTGG+TGG 0.460064 3.4:-65425733 MS.gene05081:intron
TCTGATCCTATCATGGCAAC+TGG 0.460438 3.4:-65425973 MS.gene05081:CDS
CATGATAGGATCAGAGTACT+TGG 0.465171 3.4:+65425981 None:intergenic
TTGGAATTGTTGGAGCTGCC+GGG 0.483479 3.4:-65426425 MS.gene05081:CDS
CTGGCTCCAACAAGCTGTAC+AGG 0.484702 3.4:+65424773 None:intergenic
CCTTTCGTCTCATTCCTGCC+GGG 0.485773 3.4:-65427302 MS.gene05081:CDS
TTTGGAAGCGCTGTTAGCTA+TGG 0.497044 3.4:-65425604 MS.gene05081:CDS
TCATTGCCAACGATAGTTGA+AGG 0.500413 3.4:-65427429 MS.gene05081:CDS
CAAGTACTCTGATCCTATCA+TGG 0.508310 3.4:-65425980 MS.gene05081:CDS
TTAAGACTCCCACTTACAGC+AGG 0.509878 3.4:+65425673 None:intergenic
AAAGAAGTGATTCCGAAATA+CGG 0.514005 3.4:-65427342 MS.gene05081:CDS
GCAAATAAAGCCACTGTCAA+AGG 0.516029 3.4:+65426471 None:intergenic
ATCCTATCATGGCAACTGGA+TGG 0.520007 3.4:-65425969 MS.gene05081:CDS
CAAACATACACTGCCCAAAC+CGG 0.521722 3.4:+65427137 None:intergenic
AAATGTAAGTGAACTGAGCT+TGG 0.524209 3.4:+65425214 None:intergenic
ACTTCTCACTGTGGGGAAGT+GGG 0.524428 3.4:-65426068 MS.gene05081:CDS
TTACCTTCCCTATCAAATGA+TGG 0.526160 3.4:-65426096 MS.gene05081:CDS
TCCTATCATGGCAACTGGAT+GGG 0.527496 3.4:-65425968 MS.gene05081:intron
TTGGCACTGTCATGGTTCGG+TGG 0.529695 3.4:-65426008 MS.gene05081:CDS
TGGCACTGTCATGGTTCGGT+GGG 0.533959 3.4:-65426007 MS.gene05081:CDS
GTTGGTCCCATCATTTGATA+GGG 0.534214 3.4:+65426089 None:intergenic
ACTTCCCCACAGTGAGAAGT+TGG 0.536693 3.4:+65426071 None:intergenic
AAAAGCAACAAGAAGGAACC+CGG 0.541215 3.4:+65427284 None:intergenic
CTTCTCACTGTGGGGAAGTG+GGG 0.546730 3.4:-65426067 MS.gene05081:CDS
ATATCGCCGTTCTTCTTCTG+GGG 0.550209 3.4:-65427384 MS.gene05081:CDS
GCTTCTTGCAGCTCAGAGCA+TGG 0.554655 3.4:-65426034 MS.gene05081:CDS
GTCCCATCATTTGATAGGGA+AGG 0.560690 3.4:+65426093 None:intergenic
TACAACACCAAGTACAAGCC+CGG 0.560997 3.4:+65426407 None:intergenic
CTCTTAAGTGCAGAAGAAGA+TGG 0.563214 3.4:-65427474 MS.gene05081:CDS
TGGGACCAACTTCTCACTGT+GGG 0.567404 3.4:-65426076 MS.gene05081:CDS
CAGTTGGCACTGTCATGGTT+CGG 0.567605 3.4:-65426011 MS.gene05081:CDS
TACCTTCCCTATCAAATGAT+GGG 0.568733 3.4:-65426095 MS.gene05081:CDS
TACTGTAGCTGCAATATACA+TGG 0.570176 3.4:-65424747 MS.gene05081:CDS
CATAACCCTTCAACTATCGT+TGG 0.574957 3.4:+65427423 None:intergenic
GGGTTGGAGAAAACTTCAGC+CGG 0.580439 3.4:-65427156 MS.gene05081:CDS
CATGGCAGTTGGCACTGTCA+TGG 0.583057 3.4:-65426016 MS.gene05081:CDS
GCAACAAGAAGGAACCCGGC+AGG 0.583290 3.4:+65427288 None:intergenic
CATTGCCAACGATAGTTGAA+GGG 0.584619 3.4:-65427428 MS.gene05081:CDS
GACGAGAGCAAATATGGCGA+TGG 0.586449 3.4:+65427212 None:intergenic
GCAGCTCAGAGCATGGCAGT+TGG 0.587376 3.4:-65426027 MS.gene05081:CDS
AACAAGCTGTACAGGTGAGA+AGG 0.591167 3.4:+65424781 None:intergenic
AACCAGCAAAAGCAACAAGA+AGG 0.591823 3.4:+65427277 None:intergenic
TGATTCACAACCTTTGACAG+TGG 0.592362 3.4:-65426481 MS.gene05081:CDS
GGTTAACTTTAGAAACACTT+CGG 0.596814 3.4:-65424726 MS.gene05081:CDS
CACTTCTTTCATCGCCACCA+TGG 0.610773 3.4:+65427356 None:intergenic
AGCCAAGCATGGAAGCCAGA+AGG 0.612271 3.4:+65427237 None:intergenic
TGGCGATGGAGAGCCAAGCA+TGG 0.615881 3.4:+65427226 None:intergenic
TAAGAATCGCTAATGCCACA+AGG 0.616917 3.4:+65425704 None:intergenic
CCCGGCAGGAATGAGACGAA+AGG 0.618042 3.4:+65427302 None:intergenic
TATTGCAGCTACAGTAACAC+TGG 0.626784 3.4:+65424754 None:intergenic
GAAGTGCCCCAGAAGAAGAA+CGG 0.628202 3.4:+65427378 None:intergenic
CTTCTGGGGCACTTCCATGG+TGG 0.634864 3.4:-65427370 MS.gene05081:CDS
AAGAATCGCTAATGCCACAA+GGG 0.636088 3.4:+65425705 None:intergenic
TGTAGGACTTGTGTTACTCG+AGG 0.646341 3.4:-65426388 MS.gene05081:intron
ACAACGACCCTGCTGTAAGT+GGG 0.654735 3.4:-65425681 MS.gene05081:CDS
AGAATCGCTAATGCCACAAG+GGG 0.656521 3.4:+65425706 None:intergenic
TAAGACTCCCACTTACAGCA+GGG 0.658809 3.4:+65425674 None:intergenic
ATGGGACCAACTTCTCACTG+TGG 0.681145 3.4:-65426077 MS.gene05081:CDS
GGGACCAACTTCTCACTGTG+GGG 0.711575 3.4:-65426075 MS.gene05081:CDS
GAATCGCTAATGCCACAAGG+GGG 0.752839 3.4:+65425707 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTACATATTCTTTAT+GGG + chr3.4:65426945-65426964 None:intergenic 10.0%
!! ACAATTATAATTGTAAAAGA+TGG + chr3.4:65427212-65427231 None:intergenic 15.0%
!! ACTATTCTATTATTATTGTT+TGG - chr3.4:65425160-65425179 MS.gene05081:intron 15.0%
!! CTAATATTACATATTCTTTA+TGG + chr3.4:65426946-65426965 None:intergenic 15.0%
!! CTATTCTATTATTATTGTTT+GGG - chr3.4:65425161-65425180 MS.gene05081:intron 15.0%
!!! AAAAGTATTATGCATATAAT+TGG - chr3.4:65425930-65425949 MS.gene05081:intron 15.0%
!!! ACTTTTCTTTTTCTTTTAAA+CGG - chr3.4:65425430-65425449 MS.gene05081:intron 15.0%
!! AAAAGTTGTTGAGTTAAATT+TGG - chr3.4:65425650-65425669 MS.gene05081:CDS 20.0%
!! AAATCTTCAAGTATACAAAA+TGG + chr3.4:65426888-65426907 None:intergenic 20.0%
!! ATATAATTGGAACGATATTA+AGG - chr3.4:65425943-65425962 MS.gene05081:intron 20.0%
!! GTAGTAATAATGACTATATT+CGG - chr3.4:65425354-65425373 MS.gene05081:intron 20.0%
!! TCAAAATTACAAAATCAACT+CGG + chr3.4:65426023-65426042 None:intergenic 20.0%
!! TCTAATCGTTTAAAAAAAAG+AGG - chr3.4:65426385-65426404 MS.gene05081:intron 20.0%
!!! ATTTTATAGAGTAATTTCAC+GGG + chr3.4:65425592-65425611 None:intergenic 20.0%
!!! CATTTTATAGAGTAATTTCA+CGG + chr3.4:65425593-65425612 None:intergenic 20.0%
!!! CTTTTCTTTTTCTTTTAAAC+GGG - chr3.4:65425431-65425450 MS.gene05081:intron 20.0%
!!! GAAGTTTCTTTTTGTTTTTT+AGG - chr3.4:65427096-65427115 MS.gene05081:intron 20.0%
! AACCAAAAATGTGTATACAA+AGG + chr3.4:65427387-65427406 None:intergenic 25.0%
! ACGATATTAAGGATATGTTT+AGG - chr3.4:65425954-65425973 MS.gene05081:intron 25.0%
! ACTGAATAGTACATAATAGA+AGG + chr3.4:65426076-65426095 None:intergenic 25.0%
! CGTTTAAAAAAAAGAGGAAA+GGG - chr3.4:65426391-65426410 MS.gene05081:CDS 25.0%
! CTTTAAATACAAAGTCATTC+AGG - chr3.4:65427175-65427194 MS.gene05081:CDS 25.0%
! TAGTGGAATGATGATTATAT+AGG - chr3.4:65426326-65426345 MS.gene05081:intron 25.0%
! TCGTTTAAAAAAAAGAGGAA+AGG - chr3.4:65426390-65426409 MS.gene05081:CDS 25.0%
!! CAATAATACTGATTACAATG+TGG + chr3.4:65426853-65426872 None:intergenic 25.0%
!! CATGTTTATGTTTCTTTTTG+AGG - chr3.4:65427360-65427379 MS.gene05081:CDS 25.0%
!! TAGTACATAATAGAAGGTAT+TGG + chr3.4:65426070-65426089 None:intergenic 25.0%
!!! ATATTCTTTATGGGTTGATA+TGG + chr3.4:65426936-65426955 None:intergenic 25.0%
!!! ATGTTAATTTGCTAGAAGAA+AGG + chr3.4:65427324-65427343 None:intergenic 25.0%
!!! ATTGATATTGCTGTTTTGTT+TGG - chr3.4:65425479-65425498 MS.gene05081:intron 25.0%
!!! TTGATATTGCTGTTTTGTTT+GGG - chr3.4:65425480-65425499 MS.gene05081:intron 25.0%
!!! TTGTATACACATTTTTGGTT+TGG - chr3.4:65427387-65427406 MS.gene05081:CDS 25.0%
!!! TTGTTTTTGTGATGTATTAC+AGG - chr3.4:65426974-65426993 MS.gene05081:intron 25.0%
AAAGAAGTGATTCCGAAATA+CGG - chr3.4:65424877-65424896 MS.gene05081:intron 30.0%
AAGAAAGGCTAGTGATAAAA+AGG + chr3.4:65427309-65427328 None:intergenic 30.0%
ACAAAAAAAGGACCGTATTT+CGG + chr3.4:65424892-65424911 None:intergenic 30.0%
CATACAATGTGCATTAGATA+AGG + chr3.4:65425550-65425569 None:intergenic 30.0%
CCATATGCTGTAAAAGAAAT+AGG + chr3.4:65426479-65426498 None:intergenic 30.0%
CGAAAGGAAGAAACAAAAAA+AGG + chr3.4:65424904-65424923 None:intergenic 30.0%
CTTATCTAATGCACATTGTA+TGG - chr3.4:65425548-65425567 MS.gene05081:intron 30.0%
CTTATTTGAGGATACATACA+AGG + chr3.4:65425200-65425219 None:intergenic 30.0%
GTATCCTCAAATAAGACTAT+AGG - chr3.4:65425205-65425224 MS.gene05081:CDS 30.0%
TAAGAACTTTGTAGAAGCTT+TGG - chr3.4:65426437-65426456 MS.gene05081:CDS 30.0%
TGTTTGTAAACTGAAAGTAG+TGG - chr3.4:65426309-65426328 MS.gene05081:intron 30.0%
TTGAGATGTACAATTTCTCT+TGG - chr3.4:65426039-65426058 MS.gene05081:CDS 30.0%
! ACGAAAAGTTATGATTTTGC+AGG + chr3.4:65427285-65427304 None:intergenic 30.0%
! CTTTTACAGCATATGGTTAT+TGG - chr3.4:65426483-65426502 MS.gene05081:CDS 30.0%
! GACCTTTGTATACACATTTT+TGG - chr3.4:65427382-65427401 MS.gene05081:CDS 30.0%
! GGTTAACTTTAGAAACACTT+CGG - chr3.4:65427493-65427512 MS.gene05081:CDS 30.0%
! TTCTTTTACAGTGCAACTAA+AGG - chr3.4:65426642-65426661 MS.gene05081:intron 30.0%
!! ATACTTTTGACTGCTAACTT+TGG + chr3.4:65425918-65425937 None:intergenic 30.0%
!! CCTATTTCTTTTACAGCATA+TGG - chr3.4:65426476-65426495 MS.gene05081:CDS 30.0%
!! TACTTTTGACTGCTAACTTT+GGG + chr3.4:65425917-65425936 None:intergenic 30.0%
!! TATTTCAGGTTTCTGTATCT+TGG - chr3.4:65427410-65427429 MS.gene05081:CDS 30.0%
!! TTCACCTATAGTCTTATTTG+AGG + chr3.4:65425212-65425231 None:intergenic 30.0%
!!! CATTTTTGGTTTGGTATTTC+AGG - chr3.4:65427396-65427415 MS.gene05081:CDS 30.0%
AAAATCAGAAAGACAGCTGA+TGG - chr3.4:65427139-65427158 MS.gene05081:intron 35.0%
AAATGTAAGTGAACTGAGCT+TGG + chr3.4:65427008-65427027 None:intergenic 35.0%
AACGATAGTTGAAGGGTTAT+GGG - chr3.4:65424798-65424817 MS.gene05081:CDS 35.0%
AACTTTGGGCTGTGTATAAA+GGG + chr3.4:65425903-65425922 None:intergenic 35.0%
ATATCCACACTAGATAGTCA+AGG + chr3.4:65425703-65425722 None:intergenic 35.0%
GACTATCTAGTGTGGATATA+TGG - chr3.4:65425704-65425723 MS.gene05081:CDS 35.0%
GTACAGTTCAACTGATGTAT+TGG - chr3.4:65426572-65426591 MS.gene05081:intron 35.0%
GTGTGTCATATTGATAGAAC+TGG - chr3.4:65425619-65425638 MS.gene05081:CDS 35.0%
TAACAATGGAAAAGAGTTGC+AGG - chr3.4:65427068-65427087 MS.gene05081:intron 35.0%
TAACTTTGGGCTGTGTATAA+AGG + chr3.4:65425904-65425923 None:intergenic 35.0%
TACCTTCCCTATCAAATGAT+GGG - chr3.4:65426124-65426143 MS.gene05081:intron 35.0%
TACTGTAGCTGCAATATACA+TGG - chr3.4:65427472-65427491 MS.gene05081:CDS 35.0%
TTACAGCATATGGTTATTGG+TGG - chr3.4:65426486-65426505 MS.gene05081:CDS 35.0%
TTACCTTCCCTATCAAATGA+TGG - chr3.4:65426123-65426142 MS.gene05081:intron 35.0%
TTCCAAAAATGGACATGTAG+AGG + chr3.4:65426602-65426621 None:intergenic 35.0%
! TATTGATAGAACTGGACTAG+AGG - chr3.4:65425627-65425646 MS.gene05081:CDS 35.0%
! TGCAACTCTTTTCCATTGTT+AGG + chr3.4:65427069-65427088 None:intergenic 35.0%
! TGCACCATTTTGGATTAAAG+TGG + chr3.4:65426824-65426843 None:intergenic 35.0%
!! AGTGCCACTTTAATCCAAAA+TGG - chr3.4:65426817-65426836 MS.gene05081:intron 35.0%
!! CATAATAGAAGGTATTGGAC+AGG + chr3.4:65426065-65426084 None:intergenic 35.0%
!! TTATTTGCGGCTTTGCTATT+TGG - chr3.4:65425763-65425782 MS.gene05081:intron 35.0%
!! TTTGACAGTGGCTTTATTTG+CGG - chr3.4:65425750-65425769 MS.gene05081:intron 35.0%
AAAAATCGAGGCAAACATCG+GGG + chr3.4:65427035-65427054 None:intergenic 40.0%
AAAAGCAACAAGAAGGAACC+CGG + chr3.4:65424938-65424957 None:intergenic 40.0%
AACCAGCAAAAGCAACAAGA+AGG + chr3.4:65424945-65424964 None:intergenic 40.0%
AAGAATCGCTAATGCCACAA+GGG + chr3.4:65426517-65426536 None:intergenic 40.0%
AATATCGCCGTTCTTCTTCT+GGG - chr3.4:65424834-65424853 MS.gene05081:intron 40.0%
ACGTAGTTTAAATCCCCTTC+GGG - chr3.4:65426774-65426793 MS.gene05081:intron 40.0%
AGTTGGTCCCATCATTTGAT+AGG + chr3.4:65426134-65426153 None:intergenic 40.0%
ATCTAGTGTGGATATATGGC+AGG - chr3.4:65425708-65425727 MS.gene05081:CDS 40.0%
ATTCAGTAATGCAGCACTAC+TGG - chr3.4:65426089-65426108 MS.gene05081:CDS 40.0%
ATTTGACCTTGTAACCTCAG+TGG - chr3.4:65426751-65426770 MS.gene05081:intron 40.0%
CAAAAATCGAGGCAAACATC+GGG + chr3.4:65427036-65427055 None:intergenic 40.0%
CAACGATAGTTGAAGGGTTA+TGG - chr3.4:65424797-65424816 MS.gene05081:CDS 40.0%
CAACTCGGCAATGTATTTCT+TGG + chr3.4:65426008-65426027 None:intergenic 40.0%
CAAGTACTCTGATCCTATCA+TGG - chr3.4:65426239-65426258 MS.gene05081:intron 40.0%
CATAACCCTTCAACTATCGT+TGG + chr3.4:65424799-65424818 None:intergenic 40.0%
CATCTTCTTCTGCACTTAAG+AGG + chr3.4:65424747-65424766 None:intergenic 40.0%
CATTGCCAACGATAGTTGAA+GGG - chr3.4:65424791-65424810 MS.gene05081:CDS 40.0%
CCAAAAATCGAGGCAAACAT+CGG + chr3.4:65427037-65427056 None:intergenic 40.0%
CTCTTAAGTGCAGAAGAAGA+TGG - chr3.4:65424745-65424764 MS.gene05081:CDS 40.0%
GACGTAGTTTAAATCCCCTT+CGG - chr3.4:65426773-65426792 MS.gene05081:intron 40.0%
GATTTAAACTACGTCCACTG+AGG + chr3.4:65426768-65426787 None:intergenic 40.0%
GCAAATAAAGCCACTGTCAA+AGG + chr3.4:65425751-65425770 None:intergenic 40.0%
GGCAATGTATTTCTTGGTTG+TGG + chr3.4:65426002-65426021 None:intergenic 40.0%
GTTGGTCCCATCATTTGATA+GGG + chr3.4:65426133-65426152 None:intergenic 40.0%
TAAGAATCGCTAATGCCACA+AGG + chr3.4:65426518-65426537 None:intergenic 40.0%
TAATATCGCCGTTCTTCTTC+TGG - chr3.4:65424833-65424852 MS.gene05081:intron 40.0%
TATTGCAGCTACAGTAACAC+TGG + chr3.4:65427468-65427487 None:intergenic 40.0%
TATTTCTTGGTTGTGGACAC+TGG + chr3.4:65425995-65426014 None:intergenic 40.0%
TCATTGCCAACGATAGTTGA+AGG - chr3.4:65424790-65424809 MS.gene05081:CDS 40.0%
TGATTCACAACCTTTGACAG+TGG - chr3.4:65425738-65425757 MS.gene05081:intron 40.0%
! CATGATAGGATCAGAGTACT+TGG + chr3.4:65426241-65426260 None:intergenic 40.0%
! CGATGTTTGCCTCGATTTTT+GGG - chr3.4:65427035-65427054 MS.gene05081:intron 40.0%
! CTCCTCTACATGTCCATTTT+TGG - chr3.4:65426597-65426616 MS.gene05081:intron 40.0%
!! TTGCTATTTGGCGAGTCTAT+TGG - chr3.4:65425775-65425794 MS.gene05081:intron 40.0%
!!! CTTAAGAGGCACTCTTTTAC+TGG + chr3.4:65424733-65424752 None:intergenic 40.0%
!!! TTCCTTCTTGTTGCTTTTGC+TGG - chr3.4:65424940-65424959 MS.gene05081:intron 40.0%
!!! TTTTGCTGGTTCTAGAGGAA+GGG - chr3.4:65424954-65424973 MS.gene05081:intron 40.0%
AACAAGCTGTACAGGTGAGA+AGG + chr3.4:65427441-65427460 None:intergenic 45.0%
AGAATCGCTAATGCCACAAG+GGG + chr3.4:65426516-65426535 None:intergenic 45.0%
ATATCGCCGTTCTTCTTCTG+GGG - chr3.4:65424835-65424854 MS.gene05081:intron 45.0%
ATCCTATCATGGCAACTGGA+TGG - chr3.4:65426250-65426269 MS.gene05081:intron 45.0%
ATTGGAATTGTTGGAGCTGC+CGG - chr3.4:65425793-65425812 MS.gene05081:intron 45.0%
CAAACATACACTGCCCAAAC+CGG + chr3.4:65425085-65425104 None:intergenic 45.0%
CGTAGTTTAAATCCCCTTCG+GGG - chr3.4:65426775-65426794 MS.gene05081:intron 45.0%
CTTGCCTTGACTATCTAGTG+TGG - chr3.4:65425696-65425715 MS.gene05081:CDS 45.0%
GCAGTCTTACCCAAAAATCG+AGG + chr3.4:65427047-65427066 None:intergenic 45.0%
GCTAACAGCGCTTCCAAAAA+TGG + chr3.4:65426613-65426632 None:intergenic 45.0%
GGCGAGTCTATTGGAATTGT+TGG - chr3.4:65425784-65425803 MS.gene05081:intron 45.0%
GTCCCATCATTTGATAGGGA+AGG + chr3.4:65426129-65426148 None:intergenic 45.0%
GTGTGAGGACTAAGTCACTT+AGG + chr3.4:65425881-65425900 None:intergenic 45.0%
TAAGACTCCCACTTACAGCA+GGG + chr3.4:65426548-65426567 None:intergenic 45.0%
TACAACACCAAGTACAAGCC+CGG + chr3.4:65425815-65425834 None:intergenic 45.0%
TCCTATCATGGCAACTGGAT+GGG - chr3.4:65426251-65426270 MS.gene05081:intron 45.0%
TCTGATCCTATCATGGCAAC+TGG - chr3.4:65426246-65426265 MS.gene05081:intron 45.0%
TGGGTAAGACTGCCTAACAA+TGG - chr3.4:65427054-65427073 MS.gene05081:intron 45.0%
TTAAGACTCCCACTTACAGC+AGG + chr3.4:65426549-65426568 None:intergenic 45.0%
TTCTCACCTGTACAGCTTGT+TGG - chr3.4:65427440-65427459 MS.gene05081:CDS 45.0%
! CCGATGTTTGCCTCGATTTT+TGG - chr3.4:65427034-65427053 MS.gene05081:intron 45.0%
! CCTTTTACAACTACCCCGAA+GGG + chr3.4:65426791-65426810 None:intergenic 45.0%
! CTTTTACAACTACCCCGAAG+GGG + chr3.4:65426790-65426809 None:intergenic 45.0%
! GAGAAAACTTCAGCCGGTTT+GGG - chr3.4:65425069-65425088 MS.gene05081:intron 45.0%
! TCCTTTTACAACTACCCCGA+AGG + chr3.4:65426792-65426811 None:intergenic 45.0%
! TGTAGGACTTGTGTTACTCG+AGG - chr3.4:65425831-65425850 MS.gene05081:intron 45.0%
! TTCAGGGTTTTCTCGCTGAA+GGG - chr3.4:65425043-65425062 MS.gene05081:intron 45.0%
! TTTCAGGGTTTTCTCGCTGA+AGG - chr3.4:65425042-65425061 MS.gene05081:intron 45.0%
!! AGCATCGACGAGAGCAAATA+TGG + chr3.4:65425016-65425035 None:intergenic 45.0%
!! TTTGGAAGCGCTGTTAGCTA+TGG - chr3.4:65426615-65426634 MS.gene05081:intron 45.0%
!!! CTTTTGCTGGTTCTAGAGGA+AGG - chr3.4:65424953-65424972 MS.gene05081:intron 45.0%
!!! GTTGCTTTTGCTGGTTCTAG+AGG - chr3.4:65424949-65424968 MS.gene05081:intron 45.0%
AACAACGACCCTGCTGTAAG+TGG - chr3.4:65426537-65426556 MS.gene05081:intron 50.0%
AACTTCTCACTGTGGGGAAG+TGG - chr3.4:65426150-65426169 MS.gene05081:intron 50.0%
ACAACGACCCTGCTGTAAGT+GGG - chr3.4:65426538-65426557 MS.gene05081:intron 50.0%
ACCCATCCAGTTGCCATGAT+AGG + chr3.4:65426255-65426274 None:intergenic 50.0%
ACTTCCCCACAGTGAGAAGT+TGG + chr3.4:65426151-65426170 None:intergenic 50.0%
ACTTCTCACTGTGGGGAAGT+GGG - chr3.4:65426151-65426170 MS.gene05081:intron 50.0%
ATGGGACCAACTTCTCACTG+TGG - chr3.4:65426142-65426161 MS.gene05081:intron 50.0%
CACTTCTTTCATCGCCACCA+TGG + chr3.4:65424866-65424885 None:intergenic 50.0%
CAGTTGGCACTGTCATGGTT+CGG - chr3.4:65426208-65426227 MS.gene05081:intron 50.0%
CCCTTCGGGGTAGTTGTAAA+AGG - chr3.4:65426788-65426807 MS.gene05081:intron 50.0%
CTACGTCCACTGAGGTTACA+AGG + chr3.4:65426760-65426779 None:intergenic 50.0%
GAATCGCTAATGCCACAAGG+GGG + chr3.4:65426515-65426534 None:intergenic 50.0%
GACGAGAGCAAATATGGCGA+TGG + chr3.4:65425010-65425029 None:intergenic 50.0%
GGAGAAAACTTCAGCCGGTT+TGG - chr3.4:65425068-65425087 MS.gene05081:intron 50.0%
GGGTTGGAGAAAACTTCAGC+CGG - chr3.4:65425063-65425082 MS.gene05081:intron 50.0%
TCCTTTCGTCTCATTCCTGC+CGG - chr3.4:65424916-65424935 MS.gene05081:intron 50.0%
TGGGACCAACTTCTCACTGT+GGG - chr3.4:65426143-65426162 MS.gene05081:intron 50.0%
TTGGAATTGTTGGAGCTGCC+GGG - chr3.4:65425794-65425813 MS.gene05081:intron 50.0%
! AAGAGGAAAGGGCGTGTGAA+AGG - chr3.4:65426402-65426421 MS.gene05081:CDS 50.0%
! GAAGTGCCCCAGAAGAAGAA+CGG + chr3.4:65424844-65424863 None:intergenic 50.0%
! GGCTGTGTATAAAGGGTGTG+AGG + chr3.4:65425896-65425915 None:intergenic 50.0%
! GTCGATGCTGCTTGCTTTCA+GGG - chr3.4:65425027-65425046 MS.gene05081:intron 50.0%
! GTGGAAGACGTGCACCATTT+TGG + chr3.4:65426834-65426853 None:intergenic 50.0%
!! GGGCTTGTACTTGGTGTTGT+AGG - chr3.4:65425814-65425833 MS.gene05081:intron 50.0%
!! TTCCTTCTGGCTTCCATGCT+TGG - chr3.4:65424980-65424999 MS.gene05081:intron 50.0%
AGCCAAGCATGGAAGCCAGA+AGG + chr3.4:65424985-65425004 None:intergenic 55.0%
CATGGCAGTTGGCACTGTCA+TGG - chr3.4:65426203-65426222 MS.gene05081:intron 55.0%
CCTTTCGTCTCATTCCTGCC+GGG - chr3.4:65424917-65424936 MS.gene05081:intron 55.0%
CTGGCTCCAACAAGCTGTAC+AGG + chr3.4:65427449-65427468 None:intergenic 55.0%
CTTCTCACTGTGGGGAAGTG+GGG - chr3.4:65426152-65426171 MS.gene05081:intron 55.0%
GCTTCTTGCAGCTCAGAGCA+TGG - chr3.4:65426185-65426204 MS.gene05081:intron 55.0%
GGGACCAACTTCTCACTGTG+GGG - chr3.4:65426144-65426163 MS.gene05081:intron 55.0%
! CGTCGATGCTGCTTGCTTTC+AGG - chr3.4:65425026-65425045 MS.gene05081:intron 55.0%
! GGGTTTTCTCGCTGAAGGGT+TGG - chr3.4:65425047-65425066 MS.gene05081:intron 55.0%
! TATTGGTGGTCTCCCCCTTG+TGG - chr3.4:65426500-65426519 MS.gene05081:intron 55.0%
! TTGGCACTGTCATGGTTCGG+TGG - chr3.4:65426211-65426230 MS.gene05081:intron 55.0%
!! AGAGGAAGGGCGTTTCCTTC+TGG - chr3.4:65424967-65424986 MS.gene05081:intron 55.0%
!! CTTCTTCTGGGGCACTTCCA+TGG - chr3.4:65424846-65424865 MS.gene05081:intron 55.0%
!! TGGCACTGTCATGGTTCGGT+GGG - chr3.4:65426212-65426231 MS.gene05081:intron 55.0%
CCCGGCAGGAATGAGACGAA+AGG + chr3.4:65424920-65424939 None:intergenic 60.0%
GCAACAAGAAGGAACCCGGC+AGG + chr3.4:65424934-65424953 None:intergenic 60.0%
GCAGCTCAGAGCATGGCAGT+TGG - chr3.4:65426192-65426211 MS.gene05081:intron 60.0%
TGGCGATGGAGAGCCAAGCA+TGG + chr3.4:65424996-65425015 None:intergenic 60.0%
TGTGGGGAAGTGGGGAGTTG+TGG - chr3.4:65426160-65426179 MS.gene05081:intron 60.0%
!! CTTCTGGGGCACTTCCATGG+TGG - chr3.4:65424849-65424868 MS.gene05081:intron 60.0%
GGAGCTGCCGGGCTTGTACT+TGG - chr3.4:65425805-65425824 MS.gene05081:intron 65.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 65424721 65427520 65424721 ID=MS.gene05081
chr3.4 mRNA 65424721 65427520 65424721 ID=MS.gene05081.t1;Parent=MS.gene05081
chr3.4 exon 65427146 65427520 65427146 ID=MS.gene05081.t1.exon1;Parent=MS.gene05081.t1
chr3.4 CDS 65427146 65427520 65427146 ID=cds.MS.gene05081.t1;Parent=MS.gene05081.t1
chr3.4 exon 65426389 65426511 65426389 ID=MS.gene05081.t1.exon2;Parent=MS.gene05081.t1
chr3.4 CDS 65426389 65426511 65426389 ID=cds.MS.gene05081.t1;Parent=MS.gene05081.t1
chr3.4 exon 65425969 65426118 65425969 ID=MS.gene05081.t1.exon3;Parent=MS.gene05081.t1
chr3.4 CDS 65425969 65426118 65425969 ID=cds.MS.gene05081.t1;Parent=MS.gene05081.t1
chr3.4 exon 65425578 65425749 65425578 ID=MS.gene05081.t1.exon4;Parent=MS.gene05081.t1
chr3.4 CDS 65425578 65425749 65425578 ID=cds.MS.gene05081.t1;Parent=MS.gene05081.t1
chr3.4 exon 65425185 65425245 65425185 ID=MS.gene05081.t1.exon5;Parent=MS.gene05081.t1
chr3.4 CDS 65425185 65425245 65425185 ID=cds.MS.gene05081.t1;Parent=MS.gene05081.t1
chr3.4 exon 65424721 65424823 65424721 ID=MS.gene05081.t1.exon6;Parent=MS.gene05081.t1
chr3.4 CDS 65424721 65424823 65424721 ID=cds.MS.gene05081.t1;Parent=MS.gene05081.t1
Gene Sequence

>MS.gene05081

ATGGATAAGCCAGTAAAAGAGTGCCTCTTAAGTGCAGAAGAAGATGGAAAAGCAAGTGACAAAGATGAATCATTGCCAACGATAGTTGAAGGGTTATGGGAAGCTGCTGTGTTAATATCGCCGTTCTTCTTCTGGGGCACTTCCATGGTGGCGATGAAAGAAGTGATTCCGAAATACGGTCCTTTTTTTGTTTCTTCCTTTCGTCTCATTCCTGCCGGGTTCCTTCTTGTTGCTTTTGCTGGTTCTAGAGGAAGGGCGTTTCCTTCTGGCTTCCATGCTTGGCTCTCCATCGCCATATTTGCTCTCGTCGATGCTGCTTGCTTTCAGGGTTTTCTCGCTGAAGGGTTGGAGAAAACTTCAGCCGGTTTGGGCAGTGTATGTTTGCACTTCATTTCTAAGTGAATTTTACTGTTACTACTCTACTATTACTATTACTACTACTATTCTATTATTATTGTTTGGGCAGTAAACACTTACCTTGTATGTATCCTCAAATAAGACTATAGGTGAAAATGTTTCTAATGTAATTAGTGTTTACATTGTGTGTATGTTTACGTACTAAATTGTCATTTGTGATAGATATGTTCAACTCTGATTTTTATTTTTTTTTTTATCTTCGAAGACAAATTAGTAGTAGTAATAATGACTATATTCGGAAAAAAACAATAAATGTATCTAACAATTTGTAACATGACTTAGATTTAGAGACACTTTTCTTTTTCTTTTAAACGGGACTTATATTTATGCTCAGATTTTATATTGATATTGCTGTTTTGTTTGGGTGTTTATGTCTAGTTCGTATCGTTGCTAGAAACTACAGTATAGTCCTTATCTAATGCACATTGTATGGCTAAGATTAATGTTGAATCCCGTGAAATTACTCTATAAAATGATGTATGTGTGTCATATTGATAGAACTGGACTAGAGGAAAAGTTGTTGAGTTAAATTTGGAGCAGTAAGAGCATGAATTGTTGCTTGCCTTGACTATCTAGTGTGGATATATGGCAGGTTATTATTGATTCACAACCTTTGACAGTGGCTTTATTTGCGGCTTTGCTATTTGGCGAGTCTATTGGAATTGTTGGAGCTGCCGGGCTTGTACTTGGTGTTGTAGGACTTGTGTTACTCGAGGTAGTTTAAGTTTGATCAAGTTTAACCTAAGTGACTTAGTCCTCACACCCTTTATACACAGCCCAAAGTTAGCAGTCAAAAGTATTATGCATATAATTGGAACGATATTAAGGATATGTTTAGGTATAGTTAGCGTTGTCCAGTGTCCACAACCAAGAAATACATTGCCGAGTTGATTTTGTAATTTTGAGATGTACAATTTCTCTTGGCCTGTCCAATACCTTCTATTATGTACTATTCAGTAATGCAGCACTACTGGTTTTATTGCAGTTACCTTCCCTATCAAATGATGGGACCAACTTCTCACTGTGGGGAAGTGGGGAGTTGTGGATGCTTCTTGCAGCTCAGAGCATGGCAGTTGGCACTGTCATGGTTCGGTGGGTCTCCAAGTACTCTGATCCTATCATGGCAACTGGATGGGTGCGCTTCAAATCTCATTTTAACTTGAGTTATGAATGTTTGTAAACTGAAAGTAGTGGAATGATGATTATATAGGTGTTACATTCGTATATTAGTATTTTTGCGAAAAAAATCTAATCGTTTAAAAAAAAGAGGAAAGGGCGTGTGAAAGGTATATAGTTGTTTAAGAACTTTGTAGAAGCTTTGGTTCAAAACTTTACTATCCTATTTCTTTTACAGCATATGGTTATTGGTGGTCTCCCCCTTGTGGCATTAGCGATTCTTAACAACGACCCTGCTGTAAGTGGGAGTCTTAAAGAGTACAGTTCAACTGATGTATTGGCACTCCTCTACATGTCCATTTTTGGAAGCGCTGTTAGCTATGGTGTGTTCTTTTACAGTGCAACTAAAGGTCTGTATATCTTTTTGATTACAATCTCTTTCTTTTTCTTGCAGTGAATTTTCATTTATAATCAGTAAAGTAAGCTCAGTTTTAAGAATTTGACCTTGTAACCTCAGTGGACGTAGTTTAAATCCCCTTCGGGGTAGTTGTAAAAGGATCATTAGTGCCACTTTAATCCAAAATGGTGCACGTCTTCCACATTGTAATCAGTATTATTGATTTATCTTTATCCATTTTGTATACTTGAAGATTTGAAGTTTATTCTTGTTTTTCAAAATCCATATCAACCCATAAAGAATATGTAATATTAGTAGTGACATTGTTTTTGTGATGTATTACAGGTAGCTTGACCAAGCTCAGTTCACTTACATTTCTAACCCCGATGTTTGCCTCGATTTTTGGGTAAGACTGCCTAACAATGGAAAAGAGTTGCAGGATTTTGAAGTTTCTTTTTGTTTTTTAGGAATATATAGCAGAAAGAATAAAAATCAGAAAGACAGCTGATGGTTATATAGTACTTCTTTAAATACAAAGTCATTCAGGAGAAAAAGTGACCATCTTTTACAATTATAATTGTTTTTAACAAATAATAACTGAGTCACATGATAATTTTATTGAAGTATTGTGCCTGCAAAATCATAACTTTTCGTGCCTTTTTATCACTAGCCTTTCTTCTAGCAAATTAACATGTTTTCTGTCAAATTACATGTTTATGTTTCTTTTTGAGGACCTTTGTATACACATTTTTGGTTTGGTATTTCAGGTTTCTGTATCTTGGTGAGACCTTCTCACCTGTACAGCTTGTTGGAGCCAGTGTTACTGTAGCTGCAATATACATGGTTAACTTTAGAAACACTTCGGAGTGA

Protein sequence

>MS.gene05081.t1

MDKPVKECLLSAEEDGKASDKDESLPTIVEGLWEAAVLISPFFFWGTSMVAMKEVIPKYGPFFVSSFRLIPAGFLLVAFAGSRGRAFPSGFHAWLSIAIFALVDAACFQGFLAEGLEKTSAGLGSVIIDSQPLTVALFAALLFGESIGIVGAAGLVLGVVGLVLLELPSLSNDGTNFSLWGSGELWMLLAAQSMAVGTVMVRWVSKYSDPIMATGWHMVIGGLPLVALAILNNDPAVSGSLKEYSSTDVLALLYMSIFGSAVSYGVFFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPVQLVGASVTVAAIYMVNFRNTSE