AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051734


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051734.t1 MTR_7g055743 94.822 309 16 0 21 329 61 369 0.0 598
MS.gene051734.t1 MTR_4g036310 67.073 328 108 0 1 328 1 328 2.07e-158 446
MS.gene051734.t1 MTR_4g033205 66.159 328 111 0 1 328 1 328 4.63e-154 435
MS.gene051734.t1 MTR_4g032995 65.854 328 112 0 1 328 1 328 4.22e-153 433
MS.gene051734.t1 MTR_4g036260 71.004 269 78 0 60 328 39 307 9.25e-137 390
MS.gene051734.t1 MTR_4g036170 55.793 328 120 4 1 328 1 303 9.42e-119 345
MS.gene051734.t1 MTR_8g064610 33.535 331 183 8 6 326 76 379 6.73e-37 136
MS.gene051734.t1 MTR_8g035630 30.631 333 190 8 6 326 3 306 1.29e-34 129
MS.gene051734.t1 MTR_8g035880 30.631 333 190 8 6 326 3 306 2.43e-34 128
MS.gene051734.t1 MTR_6g012170 33.433 335 181 10 7 328 12 317 7.28e-31 119
MS.gene051734.t1 MTR_7g034395 34.226 336 175 11 6 326 8 312 6.77e-27 108
MS.gene051734.t1 MTR_6g012160 32.686 309 172 8 7 306 12 293 8.07e-27 107
MS.gene051734.t1 MTR_4g036150 63.380 71 25 1 1 70 1 71 2.55e-24 94.7
MS.gene051734.t1 MTR_2g078520 28.116 345 215 10 7 329 27 360 3.13e-23 99.0
MS.gene051734.t1 MTR_4g050760 25.994 327 214 8 16 327 10 323 4.10e-22 95.1
MS.gene051734.t1 MTR_2g012380 25.994 327 214 8 16 327 10 323 4.10e-22 95.1
MS.gene051734.t1 MTR_2g012380 29.412 238 155 6 16 250 10 237 2.65e-21 92.0
MS.gene051734.t1 MTR_2g012420 28.571 322 202 12 21 327 15 323 3.82e-21 92.4
MS.gene051734.t1 MTR_4g086400 28.916 332 189 14 24 326 166 479 2.50e-15 77.0
MS.gene051734.t1 MTR_4g086400 28.916 332 189 14 24 326 306 619 3.94e-15 76.6
MS.gene051734.t1 MTR_4g086410 27.795 331 194 14 24 326 306 619 9.01e-14 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051734.t1 AT4G13010 71.037 328 95 0 1 328 1 328 9.14e-170 475
MS.gene051734.t1 AT1G23740 34.835 333 180 9 4 326 76 381 4.59e-37 137
MS.gene051734.t1 AT3G15090 27.326 344 219 9 7 329 33 366 2.10e-23 99.8
MS.gene051734.t1 AT4G21580 28.354 328 207 10 16 328 10 324 1.42e-20 90.9
MS.gene051734.t1 AT4G21580 28.086 324 207 8 16 328 10 318 9.34e-20 88.6
MS.gene051734.t1 AT1G49670 34.359 195 109 8 19 208 301 481 1.98e-17 83.6
MS.gene051734.t1 AT4G21580 27.336 289 189 7 52 328 12 291 2.21e-16 78.6
MS.gene051734.t1 AT1G49670 31.455 213 114 8 19 208 301 504 3.25e-15 77.0
MS.gene051734.t1 AT5G61510 23.512 336 236 7 2 327 80 404 1.10e-11 65.9

Find 77 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCAGATGCTGAGATTTC+TGG 0.190340 7.3:+50102640 None:intergenic
AAGAAGTAGAAGAACCTTTA+AGG 0.200493 7.3:+50105479 None:intergenic
AGCCTTAGCTAGAGGAAATT+TGG 0.203726 7.3:+50102096 None:intergenic
AGGAAGATACATGGTATATA+TGG 0.221039 7.3:+50104024 None:intergenic
TGGAGGATCCACTGCCTTAA+AGG 0.271645 7.3:-50105493 MS.gene051734:intron
AAGTTTGATTCCTATGGATT+TGG 0.328504 7.3:+50102573 None:intergenic
AGCTGAGTTTGCTGTTGTTA+AGG 0.355418 7.3:-50102686 MS.gene051734:CDS
TTCTGTACTTTCCAATCAAA+TGG 0.355839 7.3:+50104081 None:intergenic
TTACCATTCGTGTTCAAGTT+AGG 0.361630 7.3:+50102286 None:intergenic
CTCTTTAATTCAACACCAAT+TGG 0.370280 7.3:+50102376 None:intergenic
TCCATCAAGTTTGATTCCTA+TGG 0.370588 7.3:+50102567 None:intergenic
CTAGTATAAATCCATTTGAT+TGG 0.387955 7.3:-50104092 MS.gene051734:CDS
AGTATTGATGGTCATGCTAC+TGG 0.389304 7.3:-50102055 MS.gene051734:CDS
AACTGAAGATCCTTACCCTT+TGG 0.395500 7.3:+50102166 None:intergenic
GTTGAATTAAAGAGTCCTTC+TGG 0.400486 7.3:-50102367 MS.gene051734:CDS
TCCATAGGAATCAAACTTGA+TGG 0.406300 7.3:-50102568 MS.gene051734:CDS
GGTGTTAAGAAGTTCAAAAC+TGG 0.429943 7.3:-50103195 MS.gene051734:CDS
ATCAAAACTTCATCTTTACT+AGG 0.431176 7.3:+50104129 None:intergenic
GGAATCAAACTTGATGGAAC+TGG 0.432358 7.3:-50102562 MS.gene051734:CDS
ATGGAAATTGTCAAAAGCTT+AGG 0.438856 7.3:-50102427 MS.gene051734:CDS
TTCCATGTTTCGAGCGCCGC+AGG 0.443235 7.3:+50102444 None:intergenic
ATTGACTATAAAACACCAAT+TGG 0.445370 7.3:-50102391 MS.gene051734:CDS
ATCTTTACTAGGACTTGGTA+TGG 0.459291 7.3:+50104140 None:intergenic
ACATGGTATATATGGGAACT+TGG 0.459439 7.3:+50104032 None:intergenic
GCTTCTAATTCCAAAGGGTA+AGG 0.460785 7.3:-50102176 MS.gene051734:CDS
GGTTGGTCTAAGAGTATTGA+TGG 0.460981 7.3:-50102067 MS.gene051734:CDS
CTATGGATTTGGTGAGTGCT+TGG 0.465508 7.3:+50102584 None:intergenic
GAGGTCATGGAGGTTGGTAA+AGG 0.473384 7.3:-50103216 MS.gene051734:CDS
CCCTTTGGAATTAGAAGCAA+AGG 0.479238 7.3:+50102181 None:intergenic
AAAACTGGTGACAAAGTTGT+AGG 0.479548 7.3:-50103180 MS.gene051734:CDS
GGAAGATACATGGTATATAT+GGG 0.490549 7.3:+50104025 None:intergenic
CTTGTTGATTTGATTAAGCA+AGG 0.495471 7.3:-50102142 MS.gene051734:CDS
GCCTTTGCTTCTAATTCCAA+AGG 0.500098 7.3:-50102182 MS.gene051734:CDS
TTATTATGTTAGAGTGGTGG+AGG 0.506338 7.3:-50102712 MS.gene051734:intron
TAGAAGAACCTTTAAGGCAG+TGG 0.507826 7.3:+50105485 None:intergenic
ACTTCATCTTTACTAGGACT+TGG 0.510602 7.3:+50104135 None:intergenic
CCTCTAGCTAAGGCTGAAGA+TGG 0.513384 7.3:-50102088 MS.gene051734:CDS
CACCTGCGGCGCTCGAAACA+TGG 0.515827 7.3:-50102446 MS.gene051734:CDS
TGATGTAGCAGGAGAGGTCA+TGG 0.520868 7.3:-50103229 MS.gene051734:CDS
CAGTACTATGCCTATGGTGG+AGG 0.522680 7.3:-50105510 MS.gene051734:CDS
CTCCAAATTTCCTCTAGCTA+AGG 0.534188 7.3:-50102098 MS.gene051734:CDS
TGCTTGGAGAGCTGTTAGAC+CGG 0.534643 7.3:+50102600 None:intergenic
CCTTTGCTTCTAATTCCAAA+GGG 0.536074 7.3:-50102181 MS.gene051734:CDS
GAGCCTAACTTGAACACGAA+TGG 0.537643 7.3:-50102289 MS.gene051734:CDS
GCTGTTCAGTACTATGCCTA+TGG 0.546682 7.3:-50105516 MS.gene051734:CDS
ATAATAGGTACTGATGTAGC+AGG 0.548468 7.3:-50103240 MS.gene051734:intron
CATGTTTCGAGCGCCGCAGG+TGG 0.554237 7.3:+50102447 None:intergenic
TAGCTAAGGCTGAAGATGGT+TGG 0.558067 7.3:-50102084 MS.gene051734:CDS
ATCTCAGCATCTGAATGCGC+CGG 0.558268 7.3:-50102634 MS.gene051734:CDS
GCAGGAGAGGTCATGGAGGT+TGG 0.561006 7.3:-50103222 MS.gene051734:CDS
TGCGCCGGCTTACCTGTCGC+CGG 0.562445 7.3:-50102619 MS.gene051734:CDS
CATGGTATATATGGGAACTT+GGG 0.564940 7.3:+50104033 None:intergenic
TAGACCGGCGACAGGTAAGC+CGG 0.566177 7.3:+50102615 None:intergenic
CAAAAGCTTAGGAGCTGATG+AGG 0.570564 7.3:-50102416 MS.gene051734:CDS
TCTTTACTAGGACTTGGTAT+GGG 0.571599 7.3:+50104141 None:intergenic
TTGATCACGGCTGCATCAGG+TGG 0.582501 7.3:-50102523 MS.gene051734:CDS
GCGTCATATTTCTTACCAGA+AGG 0.583556 7.3:+50102352 None:intergenic
GTATTGATGGTCATGCTACT+GGG 0.583811 7.3:-50102054 MS.gene051734:CDS
CGCAGTGGTTCATTGTGCAA+CGG 0.584166 7.3:-50102332 MS.gene051734:CDS
ACGGCTGCATCAGGTGGTGT+AGG 0.587496 7.3:-50102517 MS.gene051734:CDS
CAAGCACTCACCAAATCCAT+AGG 0.589785 7.3:-50102583 MS.gene051734:CDS
AGAGCTGTTAGACCGGCGAC+AGG 0.591885 7.3:+50102607 None:intergenic
GTCAACATTGAAGTAGAGCT+AGG 0.594837 7.3:+50102247 None:intergenic
TAACTTGAACACGAATGGTA+AGG 0.595964 7.3:-50102284 MS.gene051734:CDS
GCAGTTCAATTAGCAAAGCT+AGG 0.598271 7.3:-50102487 MS.gene051734:CDS
GGTATATATGGGAACTTGGG+AGG 0.598419 7.3:+50104036 None:intergenic
GGCAGTGGATCCTCCACCAT+AGG 0.599133 7.3:+50105500 None:intergenic
GTTCAGTACTATGCCTATGG+TGG 0.599990 7.3:-50105513 MS.gene051734:CDS
ATTGTGCAACGGATATTGCA+TGG 0.613154 7.3:-50102321 MS.gene051734:CDS
CCATCTTCAGCCTTAGCTAG+AGG 0.614800 7.3:+50102088 None:intergenic
AGGTACTGATGTAGCAGGAG+AGG 0.620397 7.3:-50103235 MS.gene051734:CDS
TCAGATGCTGAGATTTCTGG+TGG 0.635883 7.3:+50102643 None:intergenic
AAGTACAGAAACGCATGTTG+TGG 0.646892 7.3:-50104068 MS.gene051734:CDS
TGGTAAGAAATATGACGCAG+TGG 0.679832 7.3:-50102347 MS.gene051734:CDS
AACTTGATGGAACTGGCGAG+CGG 0.690540 7.3:-50102555 MS.gene051734:CDS
ACTCACGTAACAGCCACCTG+CGG 0.724816 7.3:-50102460 MS.gene051734:CDS
TGTAGCAGGAGAGGTCATGG+AGG 0.747398 7.3:-50103226 MS.gene051734:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATTTCAATATGATGT+AGG - chr7.3:50103284-50103303 MS.gene051734:intron 15.0%
!! CAAATATTTGTAATAAACAA+GGG + chr7.3:50104282-50104301 None:intergenic 15.0%
!! GTTGTTGAATTTATTATAAA+GGG - chr7.3:50103799-50103818 MS.gene051734:intron 15.0%
!! TATATTTGATTCTTAAGATA+TGG + chr7.3:50103227-50103246 None:intergenic 15.0%
!! TCAAATATTTGTAATAAACA+AGG + chr7.3:50104283-50104302 None:intergenic 15.0%
!! TGTTGTTGAATTTATTATAA+AGG - chr7.3:50103798-50103817 MS.gene051734:intron 15.0%
!!! ATTGATGAATCTATTTTTAA+GGG - chr7.3:50104461-50104480 MS.gene051734:intron 15.0%
!!! GTTTTTATAATAAGCTATAT+TGG + chr7.3:50102698-50102717 None:intergenic 15.0%
!! AAAATTAATATATAGTGAGC+GGG + chr7.3:50103574-50103593 None:intergenic 20.0%
!! AAATAGATTCATCAATGAAA+TGG + chr7.3:50104457-50104476 None:intergenic 20.0%
!! AAGTTGTTAAGTTAAACAAT+AGG - chr7.3:50102946-50102965 MS.gene051734:intron 20.0%
!! ATTACAAACATAATCAATTG+CGG + chr7.3:50102301-50102320 None:intergenic 20.0%
!! ATTATACTGCATTCTATAAT+AGG - chr7.3:50104315-50104334 MS.gene051734:intron 20.0%
!! CAAAATTAATATATAGTGAG+CGG + chr7.3:50103575-50103594 None:intergenic 20.0%
!!! ACTACTAATTTTTTTGTCAT+TGG + chr7.3:50103350-50103369 None:intergenic 20.0%
!!! AGATGAAGTTTTGATAAAAT+TGG - chr7.3:50103449-50103468 MS.gene051734:intron 20.0%
!!! AGTTCATTAGTTCTATATTA+AGG - chr7.3:50102547-50102566 MS.gene051734:CDS 20.0%
!!! ATTGTTTAACTTAACAACTT+AGG + chr7.3:50102946-50102965 None:intergenic 20.0%
!!! CATTGATGAATCTATTTTTA+AGG - chr7.3:50104460-50104479 MS.gene051734:intron 20.0%
!!! GAAATTTTATTATGTTAGAG+TGG - chr7.3:50104852-50104871 MS.gene051734:intron 20.0%
!!! GTTCATTAGTTCTATATTAA+GGG - chr7.3:50102548-50102567 MS.gene051734:CDS 20.0%
!!! TCATATTGAAATATTTTGTG+AGG + chr7.3:50103281-50103300 None:intergenic 20.0%
!!! TGTCAAAGATTTAAGATTTT+TGG - chr7.3:50103593-50103612 MS.gene051734:intron 20.0%
!!! TTGTTTAACTTAACAACTTA+GGG + chr7.3:50102945-50102964 None:intergenic 20.0%
! AGTGATTATGTTAACAACTT+AGG + chr7.3:50102867-50102886 None:intergenic 25.0%
! AGTTAGAACAACATTGTTAT+AGG - chr7.3:50102461-50102480 MS.gene051734:CDS 25.0%
! ATCAAAACTTCATCTTTACT+AGG + chr7.3:50103444-50103463 None:intergenic 25.0%
! ATGTATTTGTCAATGTGATT+TGG - chr7.3:50102159-50102178 MS.gene051734:CDS 25.0%
! ATGTTTGTAATTAGTGATCA+AGG - chr7.3:50102310-50102329 MS.gene051734:CDS 25.0%
! ATTGACTATAAAACACCAAT+TGG - chr7.3:50105179-50105198 MS.gene051734:intron 25.0%
! CAAAATATACATTCTCATCA+TGG - chr7.3:50102499-50102518 MS.gene051734:CDS 25.0%
! CTAGTATAAATCCATTTGAT+TGG - chr7.3:50103478-50103497 MS.gene051734:intron 25.0%
! GTGATTATGTTAACAACTTA+GGG + chr7.3:50102866-50102885 None:intergenic 25.0%
! GTTCTAACTTAACATAAGAT+TGG + chr7.3:50102450-50102469 None:intergenic 25.0%
! TGATGATTACCTTTAGATTA+GGG - chr7.3:50102228-50102247 MS.gene051734:CDS 25.0%
! TGATTCTTAAGATATGGATA+TGG + chr7.3:50103221-50103240 None:intergenic 25.0%
! TGTATTTGTCAATGTGATTT+GGG - chr7.3:50102160-50102179 MS.gene051734:CDS 25.0%
! TTAATCAAAAGCTCAATACA+TGG - chr7.3:50104030-50104049 MS.gene051734:intron 25.0%
!! AAAAGTGCAATGATATAGTA+AGG + chr7.3:50103998-50104017 None:intergenic 25.0%
!! ATTTTATTATGTTAGAGTGG+TGG - chr7.3:50104855-50104874 MS.gene051734:intron 25.0%
!! CATGATGAGAATGTATATTT+TGG + chr7.3:50102501-50102520 None:intergenic 25.0%
!!! AATCTATTTTTAAGGGTTGT+TGG - chr7.3:50104468-50104487 MS.gene051734:intron 25.0%
!!! ATAAGTTTTGTGAGATTGTT+TGG - chr7.3:50102606-50102625 MS.gene051734:CDS 25.0%
!!! GGTATTTTGAATCAGAAAAA+AGG - chr7.3:50104775-50104794 MS.gene051734:intron 25.0%
!!! TAAGTTTTGTGAGATTGTTT+GGG - chr7.3:50102607-50102626 MS.gene051734:CDS 25.0%
!!! TTGAACAAACTGCTATTTTT+CGG - chr7.3:50103867-50103886 MS.gene051734:intron 25.0%
AAAAGAATGTTTCCGATGAA+AGG + chr7.3:50104657-50104676 None:intergenic 30.0%
AAGAAGTAGAAGAACCTTTA+AGG + chr7.3:50102094-50102113 None:intergenic 30.0%
AAGTTTATACACCAATTGGT+GGG - chr7.3:50104208-50104227 MS.gene051734:intron 30.0%
AAGTTTGATTCCTATGGATT+TGG + chr7.3:50105000-50105019 None:intergenic 30.0%
AATGTAGAAGTTATATGACG+AGG + chr7.3:50102380-50102399 None:intergenic 30.0%
ACATTGGTATCAAAATTAGC+TGG - chr7.3:50103002-50103021 MS.gene051734:intron 30.0%
AGAAAAAAACTCACAATCAC+CGG + chr7.3:50102425-50102444 None:intergenic 30.0%
AGGAAGATACATGGTATATA+TGG + chr7.3:50103549-50103568 None:intergenic 30.0%
ATGGAAATTGTCAAAAGCTT+AGG - chr7.3:50105143-50105162 MS.gene051734:intron 30.0%
ATGTAGAAGTTATATGACGA+GGG + chr7.3:50102379-50102398 None:intergenic 30.0%
ATGTGAAAAATTGTATTCCC+TGG - chr7.3:50102975-50102994 MS.gene051734:intron 30.0%
CTCTTTAATTCAACACCAAT+TGG + chr7.3:50105197-50105216 None:intergenic 30.0%
CTGATGATTACCTTTAGATT+AGG - chr7.3:50102227-50102246 MS.gene051734:CDS 30.0%
GATGATTACCTTTAGATTAG+GGG - chr7.3:50102229-50102248 MS.gene051734:CDS 30.0%
GGAAGATACATGGTATATAT+GGG + chr7.3:50103548-50103567 None:intergenic 30.0%
GTTTATGTATAAGCTTGCAT+AGG + chr7.3:50102778-50102797 None:intergenic 30.0%
TGTGAAAAATTGTATTCCCT+GGG - chr7.3:50102976-50102995 MS.gene051734:intron 30.0%
TTCTGTACTTTCCAATCAAA+TGG + chr7.3:50103492-50103511 None:intergenic 30.0%
! CATTCTTTTCGGAATTTTCT+CGG - chr7.3:50104668-50104687 MS.gene051734:intron 30.0%
! TTCATCGGAAACATTCTTTT+CGG - chr7.3:50104657-50104676 MS.gene051734:intron 30.0%
! TTTTGAATTAGATGCGAGAA+AGG + chr7.3:50103923-50103942 None:intergenic 30.0%
!! CTTGTTGATTTGATTAAGCA+AGG - chr7.3:50105428-50105447 MS.gene051734:intron 30.0%
!! CTTTCAGTTTTTAAGGGTTA+CGG - chr7.3:50104704-50104723 MS.gene051734:intron 30.0%
!! GATGAGAATGTATATTTTGG+TGG + chr7.3:50102498-50102517 None:intergenic 30.0%
!! GCTTGTTTTCTGTTTCTTTT+TGG - chr7.3:50104754-50104773 MS.gene051734:intron 30.0%
!! TTTTAAGGGTTACGGTTAAA+TGG - chr7.3:50104712-50104731 MS.gene051734:intron 30.0%
!!! TGAACAAACTGCTATTTTTC+GGG - chr7.3:50103868-50103887 MS.gene051734:intron 30.0%
AAAACTGGTGACAAAGTTGT+AGG - chr7.3:50104390-50104409 MS.gene051734:intron 35.0%
AAATTTCGTCACATGTCATC+TGG - chr7.3:50103137-50103156 MS.gene051734:intron 35.0%
AACAAGCTGTTTATCCAAAC+AGG - chr7.3:50102833-50102852 MS.gene051734:intron 35.0%
AACAGATTCTTGTCAAATGC+AGG + chr7.3:50103643-50103662 None:intergenic 35.0%
AACTCATCAAAATCAGCATG+TGG - chr7.3:50103052-50103071 MS.gene051734:intron 35.0%
AAGACAGAGTTTGAATGACT+TGG + chr7.3:50104156-50104175 None:intergenic 35.0%
ACATGGTATATATGGGAACT+TGG + chr7.3:50103541-50103560 None:intergenic 35.0%
ACTTCATCTTTACTAGGACT+TGG + chr7.3:50103438-50103457 None:intergenic 35.0%
AGATAGACTAAGAACCATCA+CGG - chr7.3:50103180-50103199 MS.gene051734:CDS 35.0%
ATGAAAGGACACAGGTTAAA+GGG + chr7.3:50104642-50104661 None:intergenic 35.0%
CAAACATAATCAATTGCGGT+TGG + chr7.3:50102297-50102316 None:intergenic 35.0%
CAAGTTTATACACCAATTGG+TGG - chr7.3:50104207-50104226 MS.gene051734:intron 35.0%
CAGTTGACAACATGAAATCA+AGG + chr7.3:50104554-50104573 None:intergenic 35.0%
CATGGTATATATGGGAACTT+GGG + chr7.3:50103540-50103559 None:intergenic 35.0%
CCTTTGCTTCTAATTCCAAA+GGG - chr7.3:50105389-50105408 MS.gene051734:intron 35.0%
CTCGCATCTAATTCAAAACA+TGG - chr7.3:50103925-50103944 MS.gene051734:intron 35.0%
CTGCAAGTTTATACACCAAT+TGG - chr7.3:50104204-50104223 MS.gene051734:intron 35.0%
GATCACAATGTTGTCAATCT+CGG + chr7.3:50103896-50103915 None:intergenic 35.0%
GGTGTTAAGAAGTTCAAAAC+TGG - chr7.3:50104375-50104394 MS.gene051734:intron 35.0%
GTTGAATTAAAGAGTCCTTC+TGG - chr7.3:50105203-50105222 MS.gene051734:intron 35.0%
TAACTTGAACACGAATGGTA+AGG - chr7.3:50105286-50105305 MS.gene051734:intron 35.0%
TAATATATAGTGAGCGGGAA+AGG + chr7.3:50103569-50103588 None:intergenic 35.0%
TCCATAGGAATCAAACTTGA+TGG - chr7.3:50105002-50105021 MS.gene051734:intron 35.0%
TCCATCAAGTTTGATTCCTA+TGG + chr7.3:50105006-50105025 None:intergenic 35.0%
TTATTATGTTAGAGTGGTGG+AGG - chr7.3:50104858-50104877 MS.gene051734:intron 35.0%
TTCTATATTAAGGGCCTGTT+TGG - chr7.3:50102557-50102576 MS.gene051734:CDS 35.0%
TTGATACCAATGTAATCCCA+GGG + chr7.3:50102995-50103014 None:intergenic 35.0%
TTTAACCTGTGTCCTTTCAT+CGG - chr7.3:50104642-50104661 MS.gene051734:intron 35.0%
TTTGATACCAATGTAATCCC+AGG + chr7.3:50102996-50103015 None:intergenic 35.0%
! AGCTCAGCTTTCAGTTTTTA+AGG - chr7.3:50104697-50104716 MS.gene051734:intron 35.0%
! ATCTTTACTAGGACTTGGTA+TGG + chr7.3:50103433-50103452 None:intergenic 35.0%
! ATTTGTCAATGTGATTTGGG+TGG - chr7.3:50102163-50102182 MS.gene051734:CDS 35.0%
! GCTCAGCTTTCAGTTTTTAA+GGG - chr7.3:50104698-50104717 MS.gene051734:intron 35.0%
! TCTTTACTAGGACTTGGTAT+GGG + chr7.3:50103432-50103451 None:intergenic 35.0%
! TTACCATTCGTGTTCAAGTT+AGG + chr7.3:50105287-50105306 None:intergenic 35.0%
!! ATAATAGGTACTGATGTAGC+AGG - chr7.3:50104330-50104349 MS.gene051734:intron 35.0%
!! GCGGAAAAACATTTTGATCA+CGG - chr7.3:50105034-50105053 MS.gene051734:intron 35.0%
!! TTCATGTAGTAGAAGTGCTT+TGG - chr7.3:50103949-50103968 MS.gene051734:intron 35.0%
!!! AATGTATATTTTGGTGGAGG+AGG + chr7.3:50102492-50102511 None:intergenic 35.0%
!!! CAAAGGCACAAGTTGTTTTT+TGG + chr7.3:50105375-50105394 None:intergenic 35.0%
!!! CACAAGTTGTTTTTTGGAGA+AGG + chr7.3:50105369-50105388 None:intergenic 35.0%
!!! GAGAATGTATATTTTGGTGG+AGG + chr7.3:50102495-50102514 None:intergenic 35.0%
AAAACTGAAAGCTGAGCTGA+CGG + chr7.3:50104695-50104714 None:intergenic 40.0%
AACTGAAGATCCTTACCCTT+TGG + chr7.3:50105407-50105426 None:intergenic 40.0%
AAGTACAGAAACGCATGTTG+TGG - chr7.3:50103502-50103521 MS.gene051734:intron 40.0%
AGATTCTTGTCAAATGCAGG+TGG + chr7.3:50103640-50103659 None:intergenic 40.0%
AGCCTTAGCTAGAGGAAATT+TGG + chr7.3:50105477-50105496 None:intergenic 40.0%
ATGGTTGAAACTCCAAGTCA+AGG - chr7.3:50104731-50104750 MS.gene051734:intron 40.0%
ATTGTGCAACGGATATTGCA+TGG - chr7.3:50105249-50105268 MS.gene051734:intron 40.0%
CATTCAGATGCTGAGATTTC+TGG + chr7.3:50104933-50104952 None:intergenic 40.0%
CTCCAAATTTCCTCTAGCTA+AGG - chr7.3:50105472-50105491 MS.gene051734:intron 40.0%
GATGAAAGGACACAGGTTAA+AGG + chr7.3:50104643-50104662 None:intergenic 40.0%
GATTACCTTTAGATTAGGGG+AGG - chr7.3:50102232-50102251 MS.gene051734:CDS 40.0%
GCAGTTCAATTAGCAAAGCT+AGG - chr7.3:50105083-50105102 MS.gene051734:intron 40.0%
GCCTTTGCTTCTAATTCCAA+AGG - chr7.3:50105388-50105407 MS.gene051734:intron 40.0%
GCGTCATATTTCTTACCAGA+AGG + chr7.3:50105221-50105240 None:intergenic 40.0%
GCTAACAAGACAATCCAAAC+AGG + chr7.3:50102574-50102593 None:intergenic 40.0%
GCTTCTAATTCCAAAGGGTA+AGG - chr7.3:50105394-50105413 MS.gene051734:intron 40.0%
GGAATCAAACTTGATGGAAC+TGG - chr7.3:50105008-50105027 MS.gene051734:intron 40.0%
GTCAACATTGAAGTAGAGCT+AGG + chr7.3:50105326-50105345 None:intergenic 40.0%
TAAAGGGTTGAAACTCCAAG+TGG + chr7.3:50104626-50104645 None:intergenic 40.0%
TGGTAAGAAATATGACGCAG+TGG - chr7.3:50105223-50105242 MS.gene051734:intron 40.0%
TGGTTGAAACTCCAAGTCAA+GGG - chr7.3:50104732-50104751 MS.gene051734:intron 40.0%
TGTAATAAACAAGGGAAGCC+CGG + chr7.3:50104274-50104293 None:intergenic 40.0%
TGTATTCCCTGGGATTACAT+TGG - chr7.3:50102986-50103005 MS.gene051734:intron 40.0%
TGTTTATCCAAACAGGCTAC+AGG - chr7.3:50102840-50102859 MS.gene051734:intron 40.0%
TTAACAACTTAGGGCCTGTT+TGG + chr7.3:50102936-50102955 None:intergenic 40.0%
! GATATGGATATGGACTGTGA+AGG + chr7.3:50103211-50103230 None:intergenic 40.0%
! GTATTGATGGTCATGCTACT+GGG - chr7.3:50105516-50105535 MS.gene051734:CDS 40.0%
! TCAATTGCGGTTGGTACATA+TGG + chr7.3:50102288-50102307 None:intergenic 40.0%
!! AATGAAATGGACTGAGTAGC+CGG + chr7.3:50104444-50104463 None:intergenic 40.0%
!! AGCTGAGTTTGCTGTTGTTA+AGG - chr7.3:50104884-50104903 MS.gene051734:intron 40.0%
!! AGTATTGATGGTCATGCTAC+TGG - chr7.3:50105515-50105534 MS.gene051734:CDS 40.0%
!! CCCTTTGGAATTAGAAGCAA+AGG + chr7.3:50105392-50105411 None:intergenic 40.0%
!! GGTTGGTCTAAGAGTATTGA+TGG - chr7.3:50105503-50105522 MS.gene051734:CDS 40.0%
!! TAGAAGAACCTTTAAGGCAG+TGG + chr7.3:50102088-50102107 None:intergenic 40.0%
AAACTGAAAGCTGAGCTGAC+GGG + chr7.3:50104694-50104713 None:intergenic 45.0%
ACTTCAGATTCCAAGCCACT+TGG - chr7.3:50104608-50104627 MS.gene051734:intron 45.0%
AGCCGGCTAAGAACTTACAA+AGG + chr7.3:50104427-50104446 None:intergenic 45.0%
ATGTGCCTCCCCTAATCTAA+AGG + chr7.3:50102240-50102259 None:intergenic 45.0%
CAAAAGCTTAGGAGCTGATG+AGG - chr7.3:50105154-50105173 MS.gene051734:intron 45.0%
CAAGCACTCACCAAATCCAT+AGG - chr7.3:50104987-50105006 MS.gene051734:intron 45.0%
CAGAAAACAAGCCCTTGACT+TGG + chr7.3:50104746-50104765 None:intergenic 45.0%
CCCCTTTGTAAGTTCTTAGC+CGG - chr7.3:50104422-50104441 MS.gene051734:intron 45.0%
CCGGCTAAGAACTTACAAAG+GGG + chr7.3:50104425-50104444 None:intergenic 45.0%
GAGCCTAACTTGAACACGAA+TGG - chr7.3:50105281-50105300 MS.gene051734:intron 45.0%
GCCGGCTAAGAACTTACAAA+GGG + chr7.3:50104426-50104445 None:intergenic 45.0%
GCTGTTCAGTACTATGCCTA+TGG - chr7.3:50102054-50102073 MS.gene051734:CDS 45.0%
GGTATATATGGGAACTTGGG+AGG + chr7.3:50103537-50103556 None:intergenic 45.0%
GTTCAGTACTATGCCTATGG+TGG - chr7.3:50102057-50102076 MS.gene051734:CDS 45.0%
TAGCTAAGGCTGAAGATGGT+TGG - chr7.3:50105486-50105505 MS.gene051734:intron 45.0%
TGTTTCCGATGAAAGGACAC+AGG + chr7.3:50104650-50104669 None:intergenic 45.0%
! ATTAGGGGAGGCACATTTGT+TGG - chr7.3:50102244-50102263 MS.gene051734:CDS 45.0%
! TCAGATGCTGAGATTTCTGG+TGG + chr7.3:50104930-50104949 None:intergenic 45.0%
!! ATTTTGATCACGGCTGCATC+AGG - chr7.3:50105044-50105063 MS.gene051734:intron 45.0%
!! CTATGGATTTGGTGAGTGCT+TGG + chr7.3:50104989-50105008 None:intergenic 45.0%
!!! GACAGCTTTTAAAACCTCGC+CGG - chr7.3:50102403-50102422 MS.gene051734:CDS 45.0%
AAAACTCACAATCACCGGCG+AGG + chr7.3:50102420-50102439 None:intergenic 50.0%
AACTTGATGGAACTGGCGAG+CGG - chr7.3:50105015-50105034 MS.gene051734:intron 50.0%
ATCTCAGCATCTGAATGCGC+CGG - chr7.3:50104936-50104955 MS.gene051734:intron 50.0%
CAGTACTATGCCTATGGTGG+AGG - chr7.3:50102060-50102079 MS.gene051734:CDS 50.0%
CCATCTTCAGCCTTAGCTAG+AGG + chr7.3:50105485-50105504 None:intergenic 50.0%
CCTCTAGCTAAGGCTGAAGA+TGG - chr7.3:50105482-50105501 MS.gene051734:intron 50.0%
CGCAGTGGTTCATTGTGCAA+CGG - chr7.3:50105238-50105257 MS.gene051734:intron 50.0%
CTGTGAAGGTGAATCCGTGA+TGG + chr7.3:50103197-50103216 None:intergenic 50.0%
GAGCGGGAAAGGAAGATACA+TGG + chr7.3:50103558-50103577 None:intergenic 50.0%
GGGAACTTGGGAGGCAAAAA+TGG + chr7.3:50103528-50103547 None:intergenic 50.0%
GGTTGAAACTCCAAGTGGCT+TGG + chr7.3:50104621-50104640 None:intergenic 50.0%
TGATGTAGCAGGAGAGGTCA+TGG - chr7.3:50104341-50104360 MS.gene051734:intron 50.0%
TGCTTGGAGAGCTGTTAGAC+CGG + chr7.3:50104973-50104992 None:intergenic 50.0%
TGGAGGATCCACTGCCTTAA+AGG - chr7.3:50102077-50102096 MS.gene051734:CDS 50.0%
!! AGGTACTGATGTAGCAGGAG+AGG - chr7.3:50104335-50104354 MS.gene051734:intron 50.0%
!! GAGGTCATGGAGGTTGGTAA+AGG - chr7.3:50104354-50104373 MS.gene051734:intron 50.0%
ACTCACGTAACAGCCACCTG+CGG - chr7.3:50105110-50105129 MS.gene051734:intron 55.0%
CTAAAGCTCCCGCATACGCA+GGG + chr7.3:50104247-50104266 None:intergenic 55.0%
CTTAGGGCCTGTAGCCTGTT+TGG + chr7.3:50102850-50102869 None:intergenic 55.0%
TGTAGCAGGAGAGGTCATGG+AGG - chr7.3:50104344-50104363 MS.gene051734:intron 55.0%
TTGATCACGGCTGCATCAGG+TGG - chr7.3:50105047-50105066 MS.gene051734:intron 55.0%
! CATTTGTTGGTGCGAGCGGA+AGG - chr7.3:50102257-50102276 MS.gene051734:CDS 55.0%
! GGCACATTTGTTGGTGCGAG+CGG - chr7.3:50102253-50102272 MS.gene051734:CDS 55.0%
!! ATGCGGGAGCTTTAGGTCAC+CGG - chr7.3:50104252-50104271 MS.gene051734:intron 55.0%
ACGGCTGCATCAGGTGGTGT+AGG - chr7.3:50105053-50105072 MS.gene051734:intron 60.0%
AGAGCTGTTAGACCGGCGAC+AGG + chr7.3:50104966-50104985 None:intergenic 60.0%
CATACGCAGGGTTCGGGAAG+GGG + chr7.3:50104235-50104254 None:intergenic 60.0%
CCTAAAGCTCCCGCATACGC+AGG + chr7.3:50104248-50104267 None:intergenic 60.0%
CCTGCGTATGCGGGAGCTTT+AGG - chr7.3:50104245-50104264 MS.gene051734:intron 60.0%
CTTCCCGAACCCTGCGTATG+CGG - chr7.3:50104235-50104254 MS.gene051734:intron 60.0%
GCAGGAGAGGTCATGGAGGT+TGG - chr7.3:50104348-50104367 MS.gene051734:intron 60.0%
GCATACGCAGGGTTCGGGAA+GGG + chr7.3:50104236-50104255 None:intergenic 60.0%
GGCAGTGGATCCTCCACCAT+AGG + chr7.3:50102073-50102092 None:intergenic 60.0%
TAGACCGGCGACAGGTAAGC+CGG + chr7.3:50104958-50104977 None:intergenic 60.0%
TTCCCGAACCCTGCGTATGC+GGG - chr7.3:50104236-50104255 MS.gene051734:intron 60.0%
! TTCCATGTTTCGAGCGCCGC+AGG + chr7.3:50105129-50105148 None:intergenic 60.0%
!! TGCGGGAGCTTTAGGTCACC+GGG - chr7.3:50104253-50104272 MS.gene051734:intron 60.0%
CACCTGCGGCGCTCGAAACA+TGG - chr7.3:50105124-50105143 MS.gene051734:intron 65.0%
CGCATACGCAGGGTTCGGGA+AGG + chr7.3:50104237-50104256 None:intergenic 65.0%
CGGGAAGGGGTCCCACCAAT+TGG + chr7.3:50104222-50104241 None:intergenic 65.0%
CTCCCGCATACGCAGGGTTC+GGG + chr7.3:50104241-50104260 None:intergenic 65.0%
GCTCCCGCATACGCAGGGTT+CGG + chr7.3:50104242-50104261 None:intergenic 65.0%
! CATGTTTCGAGCGCCGCAGG+TGG + chr7.3:50105126-50105145 None:intergenic 65.0%
!! TGCGCCGGCTTACCTGTCGC+CGG - chr7.3:50104951-50104970 MS.gene051734:intron 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 50102033 50105559 50102033 ID=MS.gene051734
chr7.3 mRNA 50102033 50105559 50102033 ID=MS.gene051734.t1;Parent=MS.gene051734
chr7.3 exon 50105494 50105559 50105494 ID=MS.gene051734.t1.exon1;Parent=MS.gene051734.t1
chr7.3 CDS 50105494 50105559 50105494 ID=cds.MS.gene051734.t1;Parent=MS.gene051734.t1
chr7.3 exon 50104034 50104175 50104034 ID=MS.gene051734.t1.exon2;Parent=MS.gene051734.t1
chr7.3 CDS 50104034 50104175 50104034 ID=cds.MS.gene051734.t1;Parent=MS.gene051734.t1
chr7.3 exon 50103164 50103255 50103164 ID=MS.gene051734.t1.exon3;Parent=MS.gene051734.t1
chr7.3 CDS 50103164 50103255 50103164 ID=cds.MS.gene051734.t1;Parent=MS.gene051734.t1
chr7.3 exon 50102033 50102722 50102033 ID=MS.gene051734.t1.exon4;Parent=MS.gene051734.t1
chr7.3 CDS 50102033 50102722 50102033 ID=cds.MS.gene051734.t1;Parent=MS.gene051734.t1
Gene Sequence

>MS.gene051734

ATGGAGAACAAACTCATGCGTGCTGTTCAGTACTATGCCTATGGTGGAGGATCCACTGCCTTAAAGGTTCTTCTACTTCTTTTTATTATACTCTCAGATATATCTCATTTCTGATTTAACTCAATTATGTATTTGTCAATGTGATTTGGGTGGATTATTTGATTAAAGTGAAGAGAAATAGAGATATTATAATTCTGATGATTACCTTTAGATTAGGGGAGGCACATTTGTTGGTGCGAGCGGAAGGTCTAACCATATGTACCAACCGCAATTGATTATGTTTGTAATTAGTGATCAAGGTTTTAGATTTTTGTTTTTTTAATAACTAATGTTAGTATTTTCTCCCTCGTCATATAACTTCTACATTGTCGACAGCTTTTAAAACCTCGCCGGTGATTGTGAGTTTTTTTCTATCCAATCTTATGTTAAGTTAGAACAACATTGTTATAGGATGAACCTCCTCCACCAAAATATACATTCTCATCATGGTAATGTCTAGCTATTAAGAATGCGTAGTTCATTAGTTCTATATTAAGGGCCTGTTTGGATTGTCTTGTTAGCTTATCTACTGACATAAGTTTTGTGAGATTGTTTGGGTGAAGTTATGAAAACAGCTTATGACAATTTTCATAAGCTTTCTTCAACTTATTTTCATAAGTTCTCCAATATAGCTTATTATAAAAACAACTTATAGCATATACGAAAACAATTTAACGTTATTTTATATTTGTGATGAAAATAGCCTATGCAAGCTTATACATAAACGCTTATCATAATAAGCGCTTGTGCTATAAGCTTCAAACAAGCTGTTTATCCAAACAGGCTACAGGCCCTAAGTTGTTAACATAATCACTTTACATAAGAAGCGCTTGAGCTATAAGCTGCAAACAAGCTGTTTATCCAAACAGGCCCTAAGTTGTTAAGTTAAACAATAGGTACAGTATGTGAAAAATTGTATTCCCTGGGATTACATTGGTATCAAAATTAGCTGGATAATAAATGTTGCAGTTCTCTTTTCTAACTCATCAAAATCAGCATGTGGATGACACATTTTAAAATGTTAACTAAAGATCATGCGTTGTTGCAAAAATCAGCAGAGATGCAAAATTTCGTCACATGTCATCTGGAAAAAAACTTTTCTTATGATAGATAGACTAAGAACCATCACGGATTCACCTTCACAGTCCATATCCATATCTTAAGAATCAAATATATGTAACTTTTATATGTTTATACTACATGTTTCCTCACAAAATATTTCAATATGATGTAGGAAGCATTTGTGTCACTGTGCTTATTAGAATTTAGCAGTATCCAATGACAAAAAAATTAGTAGTAATTAGTAACAAATGTTGTTTGTTTATATAATTTTGACTTATTGCAGCATGTTGAAGTTCCCATACCAAGTCCTAGTAAAGATGAAGTTTTGATAAAATTGGAAGCAGCTAGTATAAATCCATTTGATTGGAAAGTACAGAAACGCATGTTGTGGCCATTTTTGCCTCCCAAGTTCCCATATATACCATGTATCTTCCTTTCCCGCTCACTATATATTAATTTTGTCAAAGATTTAAGATTTTTGGTAGTTAAACATATATTTTAAACCACCTGCATTTGACAAGAATCTGTTAAATATCTGTTTCTTTTGAAATGTATTTATGATTTGTATGCAAAAACTAGTGTTCTGTTAAAATATTGAATATCAATGTTGTTGAATTTCAGTTATAGCAGTGTTATAGCGTATCAGAATTCGAACATATCGCAATGTTGTTGAATTTATTATAAAGGGTTGTCAAATACTAACAATTATAGTGACACTATAGCATAGCAGAATTTGAACAAACTGCTATTTTTCGGGATCCGAGATTGACAACATTGTGATCAATGCCTTTCTCGCATCTAATTCAAAACATGGATTCATGTAGTAGAAGTGCTTTGGTTTTATAAACTTGCAATCTTCGACCTTACTATATCATTGCACTTTTCACTAACATATATTAATCAAAAGCTCAATACATGGAACAATTTTAAATAAATTACAAACTACAAATTGAATTTGATATTTAAATTTTGATCTTTACTTGATTTTGATTACAAAATAGTTTACAACATGAGTTTAACCAAGTCATTCAAACTCTGTCTTAATATTGTTTATTACAAATAATTGAAGACTGCAAGTTTATACACCAATTGGTGGGACCCCTTCCCGAACCCTGCGTATGCGGGAGCTTTAGGTCACCGGGCTTCCCTTGTTTATTACAAATATTTGAAGTGTCATGTTGATTATACTGCATTCTATAATAGGTACTGATGTAGCAGGAGAGGTCATGGAGGTTGGTAAAGGTGTTAAGAAGTTCAAAACTGGTGACAAAGTTGTAGGCGTAGTCAGCCCCTTTGTAAGTTCTTAGCCGGCTACTCAGTCCATTTCATTGATGAATCTATTTTTAAGGGTTGTTGGATTTGAAAAAACTTTTCTGTTTTCAGTTATTGTTTTCGATTGATAATTACAAAAGTATCACCTTGATTTCATGTTGTCAACTGTTTTAATGAGCTCTTATCAGTCTTCAATTTAGCTACTTCAGATTCCAAGCCACTTGGAGTTTCAACCCTTTAACCTGTGTCCTTTCATCGGAAACATTCTTTTCGGAATTTTCTCGGCCCGTCAGCTCAGCTTTCAGTTTTTAAGGGTTACGGTTAAATGGTTGAAACTCCAAGTCAAGGGCTTGTTTTCTGTTTCTTTTTGGTATTTTGAATCAGAAAAAAGGTTTTATAAATTTATTTTAGTTTAAATCTATTCGTTGTCTTGTTTTTTGAGTCATGAAATTTTATTATGTTAGAGTGGTGGAGGTCTAGCTGAGTTTGCTGTTGTTAAGGAGAGTCTCACTGCTTCAATACCACCAGAAATCTCAGCATCTGAATGCGCCGGCTTACCTGTCGCCGGTCTAACAGCTCTCCAAGCACTCACCAAATCCATAGGAATCAAACTTGATGGAACTGGCGAGCGGAAAAACATTTTGATCACGGCTGCATCAGGTGGTGTAGGACACTATGCAGTTCAATTAGCAAAGCTAGGTAACACTCACGTAACAGCCACCTGCGGCGCTCGAAACATGGAAATTGTCAAAAGCTTAGGAGCTGATGAGGTAATTGACTATAAAACACCAATTGGTGTTGAATTAAAGAGTCCTTCTGGTAAGAAATATGACGCAGTGGTTCATTGTGCAACGGATATTGCATGGTCAGTTTTTGAGCCTAACTTGAACACGAATGGTAAGGTTGTAGATATAACTCCTAGCTCTACTTCAATGTTGACATTTGCTCTTACTAAAATTACCTTCTCCAAAAAACAACTTGTGCCTTTGCTTCTAATTCCAAAGGGTAAGGATCTTCAGTTTCTTGTTGATTTGATTAAGCAAGGAAAGATTAAAACAGTTATAGACTCCAAATTTCCTCTAGCTAAGGCTGAAGATGGTTGGTCTAAGAGTATTGATGGTCATGCTACTGGGAAGATAATTTTTGAGTTTTGA

Protein sequence

>MS.gene051734.t1

MENKLMRAVQYYAYGGGSTALKHVEVPIPSPSKDEVLIKLEAASINPFDWKVQKRMLWPFLPPKFPYIPCTDVAGEVMEVGKGVKKFKTGDKVVGVVSPFSGGGLAEFAVVKESLTASIPPEISASECAGLPVAGLTALQALTKSIGIKLDGTGERKNILITAASGGVGHYAVQLAKLGNTHVTATCGARNMEIVKSLGADEVIDYKTPIGVELKSPSGKKYDAVVHCATDIAWSVFEPNLNTNGKVVDITPSSTSMLTFALTKITFSKKQLVPLLLIPKGKDLQFLVDLIKQGKIKTVIDSKFPLAKAEDGWSKSIDGHATGKIIFEF