Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071435.t1 | XP_013470218.1 | 89.4 | 302 | 8 | 2 | 1 | 278 | 180 | 481 | 1.60E-140 | 508.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071435.t1 | Q869R1 | 23.6 | 296 | 190 | 7 | 3 | 269 | 267 | 555 | 6.1e-16 | 86.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071435.t1 | A0A072VRF2 | 89.4 | 302 | 8 | 2 | 1 | 278 | 180 | 481 | 1.1e-140 | 508.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051699 | MS.gene071435 | 0.803206 | 3.89E-49 | -1.69E-46 |
| MS.gene052533 | MS.gene071435 | 0.84535 | 4.29E-59 | -1.69E-46 |
| MS.gene054222 | MS.gene071435 | 0.803881 | 2.82E-49 | -1.69E-46 |
| MS.gene056677 | MS.gene071435 | 0.81878 | 1.64E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene071435 | 0.834853 | 2.36E-56 | -1.69E-46 |
| MS.gene059774 | MS.gene071435 | 0.803513 | 3.36E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene071435 | -0.804417 | 2.18E-49 | -1.69E-46 |
| MS.gene060697 | MS.gene071435 | 0.801193 | 1.01E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071435.t1 | MTR_1g111330 | 89.404 | 302 | 8 | 2 | 1 | 278 | 180 | 481 | 0.0 | 525 |
| MS.gene071435.t1 | MTR_5g054780 | 80.528 | 303 | 33 | 3 | 1 | 278 | 174 | 475 | 1.57e-169 | 478 |
| MS.gene071435.t1 | MTR_1g111330 | 81.395 | 172 | 8 | 2 | 1 | 148 | 180 | 351 | 2.19e-87 | 265 |
| MS.gene071435.t1 | MTR_4g108910 | 82.443 | 131 | 10 | 1 | 148 | 278 | 2 | 119 | 5.40e-70 | 213 |
| MS.gene071435.t1 | MTR_3g033520 | 30.303 | 165 | 115 | 0 | 84 | 248 | 359 | 523 | 2.32e-21 | 94.0 |
| MS.gene071435.t1 | MTR_3g033520 | 30.303 | 165 | 115 | 0 | 84 | 248 | 378 | 542 | 2.89e-21 | 93.6 |
| MS.gene071435.t1 | MTR_7g086710 | 29.193 | 161 | 111 | 2 | 90 | 248 | 271 | 430 | 3.30e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071435.t1 | AT1G25500 | 70.588 | 306 | 59 | 3 | 1 | 278 | 122 | 424 | 1.19e-135 | 390 |
| MS.gene071435.t1 | AT1G25500 | 72.368 | 304 | 57 | 2 | 1 | 278 | 180 | 482 | 9.54e-135 | 390 |
| MS.gene071435.t1 | AT1G25500 | 68.379 | 253 | 49 | 3 | 1 | 225 | 54 | 303 | 1.26e-112 | 327 |
| MS.gene071435.t1 | AT5G13760 | 28.112 | 249 | 161 | 3 | 13 | 248 | 290 | 533 | 1.45e-23 | 100 |
| MS.gene071435.t1 | AT3G04440 | 24.339 | 189 | 135 | 4 | 90 | 276 | 257 | 439 | 9.65e-13 | 68.2 |
| MS.gene071435.t1 | AT3G04440 | 24.339 | 189 | 135 | 4 | 90 | 276 | 280 | 462 | 1.01e-12 | 68.2 |
| MS.gene071435.t1 | AT3G03700 | 24.339 | 189 | 135 | 4 | 90 | 276 | 280 | 462 | 1.14e-12 | 68.2 |
Find 64 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCATCTTTGAATCAATAA+AGG | 0.295109 | 1.4:-85022340 | None:intergenic |
| CTGGAACTTGTGCTGGTGTT+TGG | 0.300120 | 1.4:+85021969 | MS.gene071435:CDS |
| CATGCTCATGGGTATGGTTT+TGG | 0.306935 | 1.4:+85022039 | MS.gene071435:CDS |
| CACTTACAGATAGCTGTTAA+TGG | 0.312347 | 1.4:+85021818 | MS.gene071435:intron |
| CATTATTTACTGCAGCTATC+AGG | 0.343855 | 1.4:+85020992 | MS.gene071435:CDS |
| TGGATGGCCTTATGGTCATT+TGG | 0.345668 | 1.4:+85020603 | MS.gene071435:CDS |
| TGGGAGTTATTCCAATCAAC+TGG | 0.349178 | 1.4:+85021872 | MS.gene071435:CDS |
| GTGTTTGGGCGAGGGTTAAA+TGG | 0.350272 | 1.4:+85021984 | MS.gene071435:CDS |
| TGGAACTTGTGCTGGTGTTT+GGG | 0.360480 | 1.4:+85021970 | MS.gene071435:CDS |
| TATGCTTTAACAACATCTTT+TGG | 0.365686 | 1.4:+85020952 | MS.gene071435:CDS |
| TGATTTCCTCTTTCATCTTG+TGG | 0.389585 | 1.4:+85021186 | MS.gene071435:CDS |
| GGTTGGATTGGCAATGGTTG+TGG | 0.400792 | 1.4:+85022273 | MS.gene071435:intron |
| TGGTAAAAGCTTCAACAATT+CGG | 0.402401 | 1.4:+85021838 | MS.gene071435:CDS |
| ATACTGCAAAGATTTCATTA+AGG | 0.403891 | 1.4:-85020932 | None:intergenic |
| CACATCCATGCTCATGGGTA+TGG | 0.406680 | 1.4:+85022033 | MS.gene071435:CDS |
| ACCCTTTATTGATTCAAAGA+TGG | 0.412790 | 1.4:+85022338 | MS.gene071435:CDS |
| TAACAAATATGCCTATGTTC+AGG | 0.414206 | 1.4:+85021228 | MS.gene071435:CDS |
| CCCTTTATTGATTCAAAGAT+GGG | 0.419622 | 1.4:+85022339 | MS.gene071435:CDS |
| CTTGTGCTGGTGTTTGGGCG+AGG | 0.421969 | 1.4:+85021975 | MS.gene071435:CDS |
| AGTGATAGAGTTATTATGAT+TGG | 0.422509 | 1.4:+85022007 | MS.gene071435:CDS |
| CTTGTGGCATATGATTGTTC+AGG | 0.424285 | 1.4:+85021905 | MS.gene071435:CDS |
| GTGCCTCAACCCCAGTTGAT+TGG | 0.426924 | 1.4:-85021883 | None:intergenic |
| AATATAGGAGTGCTCGAGCC+AGG | 0.436736 | 1.4:+85022410 | MS.gene071435:CDS |
| CCCATCTTTGAATCAATAAA+GGG | 0.449353 | 1.4:-85022339 | None:intergenic |
| TCTTTCAGATACGTGGACTT+AGG | 0.451037 | 1.4:+85021125 | MS.gene071435:intron |
| TTATGGTCATTTGGAGCAGC+AGG | 0.454748 | 1.4:+85020612 | MS.gene071435:CDS |
| TACATCACCGACTTCAATAT+AGG | 0.460955 | 1.4:+85022395 | MS.gene071435:CDS |
| GATTTCATTAAGGAGTTAGC+AGG | 0.469510 | 1.4:-85020922 | None:intergenic |
| TGCTGCTCCAAATGACCATA+AGG | 0.477819 | 1.4:-85020610 | None:intergenic |
| ATTCCAATCAACTGGGGTTG+AGG | 0.495610 | 1.4:+85021880 | MS.gene071435:CDS |
| TGGCTCCACATCCATGCTCA+TGG | 0.509273 | 1.4:+85022027 | MS.gene071435:CDS |
| GTGGCTTCAAACTTGAGTGA+TGG | 0.511129 | 1.4:+85020639 | MS.gene071435:CDS |
| CGTGGACTTAGGTCAAAGAT+TGG | 0.513470 | 1.4:+85021136 | MS.gene071435:CDS |
| ATTTGGAGCAGCAGGTGTTG+TGG | 0.514073 | 1.4:+85020620 | MS.gene071435:CDS |
| TGGCTTCAAACTTGAGTGAT+GGG | 0.514253 | 1.4:+85020640 | MS.gene071435:CDS |
| TTGATAACTGGAACTTGTGC+TGG | 0.515273 | 1.4:+85021962 | MS.gene071435:CDS |
| CACGACACTCTCATGACCTC+GGG | 0.515499 | 1.4:-85020555 | None:intergenic |
| AACTGGGGTTGAGGCACTTG+TGG | 0.518075 | 1.4:+85021889 | MS.gene071435:CDS |
| GATGTAGTGTCTCAGACATC+TGG | 0.524115 | 1.4:-85022378 | None:intergenic |
| TTGTGCTGGTGTTTGGGCGA+GGG | 0.525776 | 1.4:+85021976 | MS.gene071435:CDS |
| GGCTCCACATCCATGCTCAT+GGG | 0.527680 | 1.4:+85022028 | MS.gene071435:CDS |
| GGGACGCTGGTGGCTTCTTG+TGG | 0.527891 | 1.4:+85020662 | MS.gene071435:CDS |
| TGGATTGGCAATGGTTGTGG+TGG | 0.533456 | 1.4:+85022276 | MS.gene071435:CDS |
| GAGTCTCCACAAGATGAAAG+AGG | 0.544256 | 1.4:-85021192 | None:intergenic |
| AGCTATCAGGACACTGCGAT+GGG | 0.545630 | 1.4:+85021005 | MS.gene071435:CDS |
| CAGCTATCAGGACACTGCGA+TGG | 0.546217 | 1.4:+85021004 | MS.gene071435:CDS |
| CATACCCATGAGCATGGATG+TGG | 0.547051 | 1.4:-85022032 | None:intergenic |
| ATATAGGAGTGCTCGAGCCA+GGG | 0.566148 | 1.4:+85022411 | MS.gene071435:CDS |
| GGTGGCTTCTTGTGGTGAGG+TGG | 0.571942 | 1.4:+85020670 | MS.gene071435:CDS |
| CAATTCGGCTAGAGATGCAT+GGG | 0.574864 | 1.4:+85021853 | MS.gene071435:CDS |
| GGGAGTTATTCCAATCAACT+GGG | 0.587121 | 1.4:+85021873 | MS.gene071435:CDS |
| TCATGGAATCGATAGTCCCC+TGG | 0.588725 | 1.4:-85022428 | None:intergenic |
| ACAATTCGGCTAGAGATGCA+TGG | 0.589439 | 1.4:+85021852 | MS.gene071435:CDS |
| ACAATCTGGTACCTGAACAT+AGG | 0.589676 | 1.4:-85021239 | None:intergenic |
| CAAAACCATACCCATGAGCA+TGG | 0.598545 | 1.4:-85022038 | None:intergenic |
| ACACGACACTCTCATGACCT+CGG | 0.602868 | 1.4:-85020556 | None:intergenic |
| GCTGGTGGCTTCTTGTGGTG+AGG | 0.604135 | 1.4:+85020667 | MS.gene071435:CDS |
| TATAGGAGTGCTCGAGCCAG+GGG | 0.627490 | 1.4:+85022412 | MS.gene071435:CDS |
| GGCTTCAAACTTGAGTGATG+GGG | 0.633313 | 1.4:+85020641 | MS.gene071435:CDS |
| TATCAGGACACTGCGATGGG+AGG | 0.638311 | 1.4:+85021008 | MS.gene071435:CDS |
| GAGCACTCCTATATTGAAGT+CGG | 0.639960 | 1.4:-85022402 | None:intergenic |
| GATGGTTTGGAATCTTCCCG+AGG | 0.685332 | 1.4:+85020539 | MS.gene071435:CDS |
| GGAGTTATTCCAATCAACTG+GGG | 0.706705 | 1.4:+85021874 | MS.gene071435:CDS |
| GCTTCAAACTTGAGTGATGG+GGG | 0.710727 | 1.4:+85020642 | MS.gene071435:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATATTTACAAAAATCA+TGG | - | chr1.4:85022129-85022148 | None:intergenic | 10.0% |
| !! | ATATAAAAAAATCAACAATC+TGG | - | chr1.4:85021256-85021275 | None:intergenic | 15.0% |
| !! | GAATAGTCTAATAATTAAAA+AGG | + | chr1.4:85021648-85021667 | MS.gene071435:intron | 15.0% |
| !! | TATACAAACATAAATGTATT+TGG | - | chr1.4:85021530-85021549 | None:intergenic | 15.0% |
| !! | AATATTTACAAAAATCATGG+TGG | - | chr1.4:85022126-85022145 | None:intergenic | 20.0% |
| !! | ATATTTACAAAAATCATGGT+GGG | - | chr1.4:85022125-85022144 | None:intergenic | 20.0% |
| !!! | AAATATGTAACTTTGTTTTC+AGG | + | chr1.4:85022252-85022271 | MS.gene071435:intron | 20.0% |
| !!! | CGTTAAACATGATTTTTAAT+AGG | + | chr1.4:85021723-85021742 | MS.gene071435:intron | 20.0% |
| ! | AAAGGAGATCAAGAATATAT+AGG | + | chr1.4:85021666-85021685 | MS.gene071435:intron | 25.0% |
| ! | AGTGATAGAGTTATTATGAT+TGG | + | chr1.4:85022007-85022026 | MS.gene071435:CDS | 25.0% |
| ! | ATACTGCAAAGATTTCATTA+AGG | - | chr1.4:85020935-85020954 | None:intergenic | 25.0% |
| ! | CAAACGTGTTTAAAGATTTA+AGG | - | chr1.4:85022078-85022097 | None:intergenic | 25.0% |
| ! | GTTTAAAGATTTAAGGAGAT+TGG | - | chr1.4:85022071-85022090 | None:intergenic | 25.0% |
| ! | TCATTCTGTATGTTCTTATT+TGG | + | chr1.4:85020706-85020725 | MS.gene071435:intron | 25.0% |
| ! | TTATTACATTTCATGCTTAC+AGG | + | chr1.4:85020782-85020801 | MS.gene071435:intron | 25.0% |
| !! | TATGCTTTAACAACATCTTT+TGG | + | chr1.4:85020952-85020971 | MS.gene071435:CDS | 25.0% |
| !! | TTAATGCATGTTTGAAATCA+CGG | - | chr1.4:85022200-85022219 | None:intergenic | 25.0% |
| !! | TTTTCTCTGTAAGCTTATTT+TGG | + | chr1.4:85020805-85020824 | MS.gene071435:intron | 25.0% |
| AAACTTACACAACAATGACA+TGG | + | chr1.4:85021777-85021796 | MS.gene071435:intron | 30.0% | |
| ACTACTGATAATTACTGAGA+AGG | + | chr1.4:85021282-85021301 | MS.gene071435:intron | 30.0% | |
| AGGAATGTGTAAGAATTTGT+CGG | + | chr1.4:85021302-85021321 | MS.gene071435:intron | 30.0% | |
| AGTTATCAATCCACCAAAAA+TGG | - | chr1.4:85021951-85021970 | None:intergenic | 30.0% | |
| ATGTTTGTATAGTCAGTTGT+AGG | + | chr1.4:85021539-85021558 | MS.gene071435:intron | 30.0% | |
| CCCATCTTTGAATCAATAAA+GGG | - | chr1.4:85022342-85022361 | None:intergenic | 30.0% | |
| CCTTAATAAAGAGAGTAGAT+CGG | + | chr1.4:85021620-85021639 | MS.gene071435:intron | 30.0% | |
| GTGTAAGTTTACCAATTACA+CGG | - | chr1.4:85021767-85021786 | None:intergenic | 30.0% | |
| TAACAAATATGCCTATGTTC+AGG | + | chr1.4:85021228-85021247 | MS.gene071435:CDS | 30.0% | |
| TCCCATCTTTGAATCAATAA+AGG | - | chr1.4:85022343-85022362 | None:intergenic | 30.0% | |
| TGGTAAAAGCTTCAACAATT+CGG | + | chr1.4:85021838-85021857 | MS.gene071435:CDS | 30.0% | |
| TGTTTCTTGTTCTTCTTTCA+TGG | + | chr1.4:85020877-85020896 | MS.gene071435:intron | 30.0% | |
| TTCCTTACTCCTTACTATAA+AGG | + | chr1.4:85021378-85021397 | MS.gene071435:intron | 30.0% | |
| ! | CTCTTTATTAAGGCTTTTAC+AGG | - | chr1.4:85021613-85021632 | None:intergenic | 30.0% |
| !! | AATCTCACCTAAGTTGATTT+GGG | + | chr1.4:85021572-85021591 | MS.gene071435:intron | 30.0% |
| !! | ACCCTTTATTGATTCAAAGA+TGG | + | chr1.4:85022338-85022357 | MS.gene071435:CDS | 30.0% |
| !! | CCCTTTATTGATTCAAAGAT+GGG | + | chr1.4:85022339-85022358 | MS.gene071435:CDS | 30.0% |
| !! | TCTTTTGGTAGCATTTGTTA+TGG | + | chr1.4:85020967-85020986 | MS.gene071435:CDS | 30.0% |
| !!! | ATGTAACTTTGTTTTCAGGT+TGG | + | chr1.4:85022256-85022275 | MS.gene071435:intron | 30.0% |
| !!! | ATTTTTGGTGGATTGATAAC+TGG | + | chr1.4:85021950-85021969 | MS.gene071435:CDS | 30.0% |
| AAAAAGCTGTGAAGATGGTT+TGG | + | chr1.4:85020526-85020545 | MS.gene071435:CDS | 35.0% | |
| AATTTGTCGGGTAAAGTTCT+TGG | + | chr1.4:85021315-85021334 | MS.gene071435:intron | 35.0% | |
| ACAACTCATTTGCTTTCCAT+AGG | - | chr1.4:85021476-85021495 | None:intergenic | 35.0% | |
| ACAGTACCTCCTTTATAGTA+AGG | - | chr1.4:85021390-85021409 | None:intergenic | 35.0% | |
| CACAACAATGACATGGTTAA+TGG | + | chr1.4:85021784-85021803 | MS.gene071435:intron | 35.0% | |
| CACTTACAGATAGCTGTTAA+TGG | + | chr1.4:85021818-85021837 | MS.gene071435:intron | 35.0% | |
| CATTATTTACTGCAGCTATC+AGG | + | chr1.4:85020992-85021011 | MS.gene071435:CDS | 35.0% | |
| CCGATCTACTCTCTTTATTA+AGG | - | chr1.4:85021623-85021642 | None:intergenic | 35.0% | |
| CTCCTTTATAGTAAGGAGTA+AGG | - | chr1.4:85021383-85021402 | None:intergenic | 35.0% | |
| CTTACTCCTTACTATAAAGG+AGG | + | chr1.4:85021381-85021400 | MS.gene071435:intron | 35.0% | |
| GATTTCATTAAGGAGTTAGC+AGG | - | chr1.4:85020925-85020944 | None:intergenic | 35.0% | |
| GGAATGTGTAAGAATTTGTC+GGG | + | chr1.4:85021303-85021322 | MS.gene071435:intron | 35.0% | |
| GTGGAAAATACGAGTTAAGT+GGG | + | chr1.4:85021408-85021427 | MS.gene071435:intron | 35.0% | |
| TATTGCATGATCCGTGTAAT+TGG | + | chr1.4:85021753-85021772 | MS.gene071435:intron | 35.0% | |
| TGATTTCCTCTTTCATCTTG+TGG | + | chr1.4:85021186-85021205 | MS.gene071435:CDS | 35.0% | |
| TGTGGAAAATACGAGTTAAG+TGG | + | chr1.4:85021407-85021426 | MS.gene071435:intron | 35.0% | |
| TTACACGGATCATGCAATAT+CGG | - | chr1.4:85021752-85021771 | None:intergenic | 35.0% | |
| TTCTTGTTCTTCTTTCATGG+TGG | + | chr1.4:85020880-85020899 | MS.gene071435:intron | 35.0% | |
| ! | CTGTATGTTCTTATTTGGAC+TGG | + | chr1.4:85020711-85020730 | MS.gene071435:intron | 35.0% |
| !! | GAATCTCACCTAAGTTGATT+TGG | + | chr1.4:85021571-85021590 | MS.gene071435:intron | 35.0% |
| !! | GTTCTTATTTGGACTGGTTA+TGG | + | chr1.4:85020717-85020736 | MS.gene071435:intron | 35.0% |
| !! | TACATCACCGACTTCAATAT+AGG | + | chr1.4:85022395-85022414 | MS.gene071435:CDS | 35.0% |
| !! | TCGTTTTTCTTTCAGATACG+TGG | + | chr1.4:85021118-85021137 | MS.gene071435:intron | 35.0% |
| !! | TTACTATAAAGGAGGTACTG+TGG | + | chr1.4:85021389-85021408 | MS.gene071435:intron | 35.0% |
| !!! | ACTTTGTTTTCAGGTTGGAT+TGG | + | chr1.4:85022261-85022280 | MS.gene071435:intron | 35.0% |
| !!! | TCATGTTTGCTGTGCTTTTA+TGG | + | chr1.4:85020583-85020602 | MS.gene071435:CDS | 35.0% |
| !!! | TCTGTAAGCTTATTTTGGAC+AGG | + | chr1.4:85020810-85020829 | MS.gene071435:intron | 35.0% |
| AATAACAGCGTCATCAGATG+AGG | - | chr1.4:85020767-85020786 | None:intergenic | 40.0% | |
| ACAATCTGGTACCTGAACAT+AGG | - | chr1.4:85021242-85021261 | None:intergenic | 40.0% | |
| ACACAAGCCCAAATCAACTT+AGG | - | chr1.4:85021582-85021601 | None:intergenic | 40.0% | |
| ACTGTGCATGTTATAGTGTC+TGG | + | chr1.4:85020849-85020868 | MS.gene071435:intron | 40.0% | |
| ATGACTTCAAGTGCTACCTA+TGG | + | chr1.4:85021457-85021476 | MS.gene071435:intron | 40.0% | |
| CTGTGCATGTTATAGTGTCT+GGG | + | chr1.4:85020850-85020869 | MS.gene071435:intron | 40.0% | |
| CTTCAACGAAATCAGTGTCA+CGG | + | chr1.4:85022157-85022176 | MS.gene071435:intron | 40.0% | |
| CTTGTGGCATATGATTGTTC+AGG | + | chr1.4:85021905-85021924 | MS.gene071435:CDS | 40.0% | |
| GAGCACTCCTATATTGAAGT+CGG | - | chr1.4:85022405-85022424 | None:intergenic | 40.0% | |
| GGAATACACCCAAGTGAAAA+TGG | - | chr1.4:85021362-85021381 | None:intergenic | 40.0% | |
| GGAGTTATTCCAATCAACTG+GGG | + | chr1.4:85021874-85021893 | MS.gene071435:CDS | 40.0% | |
| GGGAGTTATTCCAATCAACT+GGG | + | chr1.4:85021873-85021892 | MS.gene071435:CDS | 40.0% | |
| GTTCTTGGCAGCATCATATT+TGG | + | chr1.4:85021330-85021349 | MS.gene071435:intron | 40.0% | |
| TCTGCAAAAAGCTGTGAAGA+TGG | + | chr1.4:85020521-85020540 | MS.gene071435:CDS | 40.0% | |
| TCTTTCAGATACGTGGACTT+AGG | + | chr1.4:85021125-85021144 | MS.gene071435:intron | 40.0% | |
| TGGCTTCAAACTTGAGTGAT+GGG | + | chr1.4:85020640-85020659 | MS.gene071435:CDS | 40.0% | |
| TGGGAGTTATTCCAATCAAC+TGG | + | chr1.4:85021872-85021891 | MS.gene071435:CDS | 40.0% | |
| TGGGTTGTTGAGACTAATTG+AGG | + | chr1.4:85021427-85021446 | MS.gene071435:intron | 40.0% | |
| ! | TTGATAACTGGAACTTGTGC+TGG | + | chr1.4:85021962-85021981 | MS.gene071435:CDS | 40.0% |
| !! | AAGTTGATTTGGGCTTGTGT+GGG | + | chr1.4:85021582-85021601 | MS.gene071435:intron | 40.0% |
| !! | GGTTTCAGCCATTTTCACTT+GGG | + | chr1.4:85021351-85021370 | MS.gene071435:intron | 40.0% |
| !! | TAAGTTGATTTGGGCTTGTG+TGG | + | chr1.4:85021581-85021600 | MS.gene071435:intron | 40.0% |
| !! | TGCTTTTATGGATGGCCTTA+TGG | + | chr1.4:85020595-85020614 | MS.gene071435:CDS | 40.0% |
| !! | TGGTTTCAGCCATTTTCACT+TGG | + | chr1.4:85021350-85021369 | MS.gene071435:intron | 40.0% |
| !! | TTGCTAATGGGCACCATTTT+TGG | + | chr1.4:85021935-85021954 | MS.gene071435:CDS | 40.0% |
| !!! | GTTTGCTGTGCTTTTATGGA+TGG | + | chr1.4:85020587-85020606 | MS.gene071435:CDS | 40.0% |
| !!! | TCAGGTGCTGTTTTGCTAAT+GGG | + | chr1.4:85021923-85021942 | MS.gene071435:CDS | 40.0% |
| !!! | TTCAGGTGCTGTTTTGCTAA+TGG | + | chr1.4:85021922-85021941 | MS.gene071435:CDS | 40.0% |
| !!! | TTTTCAGGTTGGATTGGCAA+TGG | + | chr1.4:85022267-85022286 | MS.gene071435:intron | 40.0% |
| ACAATTCGGCTAGAGATGCA+TGG | + | chr1.4:85021852-85021871 | MS.gene071435:CDS | 45.0% | |
| ATTCCAATCAACTGGGGTTG+AGG | + | chr1.4:85021880-85021899 | MS.gene071435:CDS | 45.0% | |
| CAAAACCATACCCATGAGCA+TGG | - | chr1.4:85022041-85022060 | None:intergenic | 45.0% | |
| CAATTCGGCTAGAGATGCAT+GGG | + | chr1.4:85021853-85021872 | MS.gene071435:CDS | 45.0% | |
| CGTGGACTTAGGTCAAAGAT+TGG | + | chr1.4:85021136-85021155 | MS.gene071435:CDS | 45.0% | |
| CTTCTTTCATGGTGGTAGAG+AGG | + | chr1.4:85020888-85020907 | MS.gene071435:intron | 45.0% | |
| GAGTCTCCACAAGATGAAAG+AGG | - | chr1.4:85021195-85021214 | None:intergenic | 45.0% | |
| GATGTAGTGTCTCAGACATC+TGG | - | chr1.4:85022381-85022400 | None:intergenic | 45.0% | |
| GCATGTTATAGTGTCTGGGA+TGG | + | chr1.4:85020854-85020873 | MS.gene071435:intron | 45.0% | |
| GCTTCAAACTTGAGTGATGG+GGG | + | chr1.4:85020642-85020661 | MS.gene071435:CDS | 45.0% | |
| GGCTTCAAACTTGAGTGATG+GGG | + | chr1.4:85020641-85020660 | MS.gene071435:CDS | 45.0% | |
| GTGGCTTCAAACTTGAGTGA+TGG | + | chr1.4:85020639-85020658 | MS.gene071435:CDS | 45.0% | |
| TGCTGCTCCAAATGACCATA+AGG | - | chr1.4:85020613-85020632 | None:intergenic | 45.0% | |
| ! | CATGCTCATGGGTATGGTTT+TGG | + | chr1.4:85022039-85022058 | MS.gene071435:CDS | 45.0% |
| ! | TGGAACTTGTGCTGGTGTTT+GGG | + | chr1.4:85021970-85021989 | MS.gene071435:CDS | 45.0% |
| ! | TTATGGTCATTTGGAGCAGC+AGG | + | chr1.4:85020612-85020631 | MS.gene071435:CDS | 45.0% |
| !! | CTAATGGGCACCATTTTTGG+TGG | + | chr1.4:85021938-85021957 | MS.gene071435:CDS | 45.0% |
| !! | TGGATGGCCTTATGGTCATT+TGG | + | chr1.4:85020603-85020622 | MS.gene071435:CDS | 45.0% |
| !!! | TATTAAAATTTAGATTTTAA+TGG | + | chr1.4:85021695-85021714 | MS.gene071435:intron | 5.0% |
| ACACGACACTCTCATGACCT+CGG | - | chr1.4:85020559-85020578 | None:intergenic | 50.0% | |
| AGCTATCAGGACACTGCGAT+GGG | + | chr1.4:85021005-85021024 | MS.gene071435:CDS | 50.0% | |
| CACATCCATGCTCATGGGTA+TGG | + | chr1.4:85022033-85022052 | MS.gene071435:CDS | 50.0% | |
| CATACCCATGAGCATGGATG+TGG | - | chr1.4:85022035-85022054 | None:intergenic | 50.0% | |
| GTGTTTGGGCGAGGGTTAAA+TGG | + | chr1.4:85021984-85022003 | MS.gene071435:CDS | 50.0% | |
| TCATGGAATCGATAGTCCCC+TGG | - | chr1.4:85022431-85022450 | None:intergenic | 50.0% | |
| ! | ATTTGGAGCAGCAGGTGTTG+TGG | + | chr1.4:85020620-85020639 | MS.gene071435:CDS | 50.0% |
| ! | CTGGAACTTGTGCTGGTGTT+TGG | + | chr1.4:85021969-85021988 | MS.gene071435:CDS | 50.0% |
| ! | GATGGTTTGGAATCTTCCCG+AGG | + | chr1.4:85020539-85020558 | MS.gene071435:CDS | 50.0% |
| !! | AATATAGGAGTGCTCGAGCC+AGG | + | chr1.4:85022410-85022429 | MS.gene071435:CDS | 50.0% |
| !! | ATATAGGAGTGCTCGAGCCA+GGG | + | chr1.4:85022411-85022430 | MS.gene071435:CDS | 50.0% |
| !! | GGTTGGATTGGCAATGGTTG+TGG | + | chr1.4:85022273-85022292 | MS.gene071435:intron | 50.0% |
| !! | TGGATTGGCAATGGTTGTGG+TGG | + | chr1.4:85022276-85022295 | MS.gene071435:CDS | 50.0% |
| CACGACACTCTCATGACCTC+GGG | - | chr1.4:85020558-85020577 | None:intergenic | 55.0% | |
| CAGCTATCAGGACACTGCGA+TGG | + | chr1.4:85021004-85021023 | MS.gene071435:CDS | 55.0% | |
| GGCTCCACATCCATGCTCAT+GGG | + | chr1.4:85022028-85022047 | MS.gene071435:CDS | 55.0% | |
| GTGCCTCAACCCCAGTTGAT+TGG | - | chr1.4:85021886-85021905 | None:intergenic | 55.0% | |
| TATCAGGACACTGCGATGGG+AGG | + | chr1.4:85021008-85021027 | MS.gene071435:CDS | 55.0% | |
| TGGCTCCACATCCATGCTCA+TGG | + | chr1.4:85022027-85022046 | MS.gene071435:CDS | 55.0% | |
| ! | AACTGGGGTTGAGGCACTTG+TGG | + | chr1.4:85021889-85021908 | MS.gene071435:CDS | 55.0% |
| ! | TTGTGCTGGTGTTTGGGCGA+GGG | + | chr1.4:85021976-85021995 | MS.gene071435:CDS | 55.0% |
| !! | TATAGGAGTGCTCGAGCCAG+GGG | + | chr1.4:85022412-85022431 | MS.gene071435:CDS | 55.0% |
| GCTGGTGGCTTCTTGTGGTG+AGG | + | chr1.4:85020667-85020686 | MS.gene071435:CDS | 60.0% | |
| GGTGGCTTCTTGTGGTGAGG+TGG | + | chr1.4:85020670-85020689 | MS.gene071435:CDS | 60.0% | |
| ! | ACTTGAGTGATGGGGGACGC+TGG | + | chr1.4:85020649-85020668 | MS.gene071435:CDS | 60.0% |
| ! | CTTGTGCTGGTGTTTGGGCG+AGG | + | chr1.4:85021975-85021994 | MS.gene071435:CDS | 60.0% |
| GGGACGCTGGTGGCTTCTTG+TGG | + | chr1.4:85020662-85020681 | MS.gene071435:CDS | 65.0% | |
| ! | TGAGTGATGGGGGACGCTGG+TGG | + | chr1.4:85020652-85020671 | MS.gene071435:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 85020513 | 85022450 | 85020513 | ID=MS.gene071435 |
| chr1.4 | mRNA | 85020513 | 85022450 | 85020513 | ID=MS.gene071435.t1;Parent=MS.gene071435 |
| chr1.4 | exon | 85020513 | 85020712 | 85020513 | ID=MS.gene071435.t1.exon1;Parent=MS.gene071435.t1 |
| chr1.4 | CDS | 85020513 | 85020712 | 85020513 | ID=cds.MS.gene071435.t1;Parent=MS.gene071435.t1 |
| chr1.4 | exon | 85020906 | 85021029 | 85020906 | ID=MS.gene071435.t1.exon2;Parent=MS.gene071435.t1 |
| chr1.4 | CDS | 85020906 | 85021029 | 85020906 | ID=cds.MS.gene071435.t1;Parent=MS.gene071435.t1 |
| chr1.4 | exon | 85021133 | 85021249 | 85021133 | ID=MS.gene071435.t1.exon3;Parent=MS.gene071435.t1 |
| chr1.4 | CDS | 85021133 | 85021249 | 85021133 | ID=cds.MS.gene071435.t1;Parent=MS.gene071435.t1 |
| chr1.4 | exon | 85021827 | 85022060 | 85021827 | ID=MS.gene071435.t1.exon4;Parent=MS.gene071435.t1 |
| chr1.4 | CDS | 85021827 | 85022060 | 85021827 | ID=cds.MS.gene071435.t1;Parent=MS.gene071435.t1 |
| chr1.4 | exon | 85022274 | 85022450 | 85022274 | ID=MS.gene071435.t1.exon5;Parent=MS.gene071435.t1 |
| chr1.4 | CDS | 85022274 | 85022450 | 85022274 | ID=cds.MS.gene071435.t1;Parent=MS.gene071435.t1 |
| Gene Sequence |
| Protein sequence |
