AlfalfaGEDB | MS.gene071586

M. sativa cultivar XinJiangDaYe / MS.gene071586

KEGG: K13161
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071586.t1	XP_013455822.1	100	76	0	0	4	79	363	438	3.10E-33	150.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071586.t1	Q9ASP6	46.2	80	38	3	4	79	369	447	3.8e-08	58.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071586.t1	A0A072ULD6	100.0	76	0	0	4	79	363	438	2.2e-33	150.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene071586	0.806942	6.44E-50	-1.69E-46
MS.gene050442	MS.gene071586	0.81295	3.27E-51	-1.69E-46
MS.gene053008	MS.gene071586	0.811923	5.49E-51	-1.69E-46
MS.gene05517	MS.gene071586	0.802591	5.22E-49	-1.69E-46
MS.gene057693	MS.gene071586	0.80751	4.88E-50	-1.69E-46
MS.gene059842	MS.gene071586	0.831238	1.87E-55	-1.69E-46
MS.gene060802	MS.gene071586	0.814443	1.54E-51	-1.69E-46
MS.gene060803	MS.gene071586	0.837387	5.36E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071586.t1	MTR_4g052940	100.000	76	0	0	4	79	363	438	3.95e-47	156
MS.gene071586.t1	MTR_7g010360	79.221	77	16	0	3	79	602	678	3.72e-36	128
MS.gene071586.t1	MTR_7g104800	68.831	77	23	1	4	79	351	427	1.05e-15	70.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071586.t1	AT3G52660	54.430	79	32	2	4	79	347	424	1.48e-19	81.3
MS.gene071586.t1	AT3G52660	54.430	79	32	2	4	79	347	424	1.48e-19	81.3
MS.gene071586.t1	AT3G52660	54.430	79	32	2	4	79	347	424	1.48e-19	81.3
MS.gene071586.t1	AT4G00830	47.500	80	37	3	4	79	369	447	1.58e-13	63.9
MS.gene071586.t1	AT4G00830	47.500	80	37	3	4	79	369	447	1.58e-13	63.9
MS.gene071586.t1	AT4G00830	47.500	80	37	3	4	79	369	447	1.58e-13	63.9
MS.gene071586.t1	AT4G00830	47.500	80	37	3	4	79	369	447	1.69e-13	63.9
MS.gene071586.t1	AT4G00830	47.500	80	37	3	4	79	361	439	2.35e-13	63.5
MS.gene071586.t1	AT4G00830	47.500	80	37	3	4	79	361	439	2.35e-13	63.5

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Find 37 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATAACCAACAGGTGG+CGG	0.573239	4.4:+49272864	None:intergenic
AAGATCACCTGAGCAAGACC+AGG	0.576660	4.4:+49272798	None:intergenic
AAGCCACCAGGCTGATCAGA+AGG	0.524101	4.4:-49272931	MS.gene071586:CDS
ACCAAACCATAACCAACAGG+TGG	0.672729	4.4:+49272861	None:intergenic
AGCCAGAAGCATCGGCATCA+TGG	0.537312	4.4:+49272121	None:intergenic
ATGCCGATGCTTCTGGCTGA+TGG	0.461515	4.4:-49272116	MS.gene071586:CDS
ATTCCACCAGGAGTTTGACC+CGG	0.610475	4.4:+49272146	None:intergenic
CAGCCTTTGATGTATGGACC+GGG	0.587599	4.4:-49272164	MS.gene071586:CDS
CCAACAGGTGGCGGATAACT+TGG	0.370029	4.4:+49272873	None:intergenic
CCAACCAAACCATAACCAAC+AGG	0.529349	4.4:+49272858	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATTAATTTATGCTGAACG+TGG	+	chr4.4:49272813-49272832	None:intergenic	30.0%
ATTAATTTATGCTGAACGTG+GGG	+	chr4.4:49272811-49272830	None:intergenic	30.0%
CTAGTTTAAAGGAATTTCTG+TGG	+	chr4.4:49272469-49272488	None:intergenic	30.0%
CTCTTATAAACAAGATCAGA+GGG	-	chr4.4:49272667-49272686	MS.gene071586:intron	30.0%
GATTAATTTATGCTGAACGT+GGG	+	chr4.4:49272812-49272831	None:intergenic	30.0%
GTAAGTGGAGACATTAATAA+TGG	+	chr4.4:49272534-49272553	None:intergenic	30.0%
TCTCTTATAAACAAGATCAG+AGG	-	chr4.4:49272666-49272685	MS.gene071586:intron	30.0%
ATTAATGTCTCCACTTACCT+GGG	-	chr4.4:49272536-49272555	MS.gene071586:intron	35.0%
CGTCTGTGTATTTGATACTA+CGG	+	chr4.4:49272125-49272144	None:intergenic	35.0%
TATTAATGTCTCCACTTACC+TGG	-	chr4.4:49272535-49272554	MS.gene071586:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	49272097	49272955	49272097	ID=MS.gene071586
chr4.4	mRNA	49272097	49272955	49272097	ID=MS.gene071586.t1;Parent=MS.gene071586
chr4.4	exon	49272806	49272955	49272806	ID=MS.gene071586.t1.exon1;Parent=MS.gene071586.t1
chr4.4	CDS	49272806	49272955	49272806	ID=cds.MS.gene071586.t1;Parent=MS.gene071586.t1
chr4.4	exon	49272097	49272183	49272097	ID=MS.gene071586.t1.exon2;Parent=MS.gene071586.t1
chr4.4	CDS	49272097	49272183	49272097	ID=cds.MS.gene071586.t1;Parent=MS.gene071586.t1

Gene Sequence

>MS.gene071586

CAAAGCCACCAGGCTGATCAGAAGGCCGTAGTATCAAATACACAGACGCAAGGATTGCTTCCAAGTTATCCGCCACCTGTTGGTTATGGTTTGGTTGGGAATCCATATGGTGCACTTGGTGCAGGATATGGTGCTCCTGGTCTTGCTCAGGTGATCTTTGCTTTTCTGTTTTTGATTAGAATCATTAGATATTTTTTAATTGTTGAGATACAAAGCTACTCTTACGCTGTTTTCATTGTGTTACTGTTGGCATAACATTACCATTCTAGCAAATAGTGACATTATAGCCTTATTGCATGCATACCTCTTTTACATATTTAACACTCCCGCCGGTTCTTTTTATAAGAGAAATATGACAAAATCAACAGACCACAGAAATTCCTTTAAACTAGTTAATGAATAATGCTAGTTTATTTTCCAAAAAATACCGTTGTCCATTATTAATGTCTCCACTTACCTGGGGAAAATGGGAATTTTGTGCAAATTAAACTTACAAGTAAAATAGAGGTATTGAAGGAAACTTAAAATATTACTTTGTTTATTATATGAAGAACCAAAAATACTCAATGTCTCTTATAAACAAGATCAGAGGGAGTATATTTTAATATTTCAAATTTCATTAGTAGTCATGTACCATCAGACTTGTCAGTATCATGCTCCCAAGTATTTTTACATAGAAGTTGATCGATGTAATAAATGCCATTGATTTATCCCCACGTTCAGCATAAATTAATCTGAGATTCTGATGACTGGAGTTATATCTTTTACTCAGCCTTTGATGTATGGACCGGGTCAAACTCCTGGTGGAATGGCCATGATGCCGATGCTTCTGGCTGATGGACGCATCGGATATGTCCTT

Protein sequence

>MS.gene071586.t1

QSHQADQKAVVSNTQTQGLLPSYPPPVGYGLVGNPYGALGAGYGAPGLAQPLMYGPGQTPGGMAMMPMLLADGRIGYVL