Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071614.t1 | RHN49106.1 | 97.1 | 375 | 11 | 0 | 1 | 375 | 67 | 441 | 1.40E-221 | 778.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071614.t1 | Q9SFF6 | 72.7 | 348 | 95 | 0 | 1 | 348 | 67 | 414 | 1.4e-161 | 570.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071614.t1 | A0A396H778 | 97.1 | 375 | 11 | 0 | 1 | 375 | 67 | 441 | 1.0e-221 | 778.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049285 | MS.gene071614 | 0.803136 | 4.03E-49 | -1.69E-46 |
| MS.gene049865 | MS.gene071614 | 0.8176 | 3.03E-52 | -1.69E-46 |
| MS.gene050825 | MS.gene071614 | 0.818176 | 2.25E-52 | -1.69E-46 |
| MS.gene050986 | MS.gene071614 | 0.817428 | 3.31E-52 | -1.69E-46 |
| MS.gene052966 | MS.gene071614 | 0.819457 | 1.15E-52 | -1.69E-46 |
| MS.gene054600 | MS.gene071614 | 0.819083 | 1.40E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene071614 | 0.803526 | 3.34E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene071614 | 0.829929 | 3.91E-55 | -1.69E-46 |
| MS.gene059022 | MS.gene071614 | 0.822701 | 2.06E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTAATAAAATGATAGAT+TGG | - | 50579:10529-10548 | MS.gene071614:intron | 15.0% |
| !! | ATTTAAATGTGAAATTTCAA+TGG | - | 50579:10878-10897 | MS.gene071614:intron | 15.0% |
| !! | TACTTAGTTAAATTATTCTT+TGG | - | 50579:8106-8125 | MS.gene071614:intron | 15.0% |
| !! | TTGCTTTAATAAAATTTCTT+TGG | - | 50579:10374-10393 | MS.gene071614:intron | 15.0% |
| !! | TTGTTATAGAAAAACATTAT+TGG | - | 50579:10306-10325 | MS.gene071614:intron | 15.0% |
| !!! | ATAAAAGTATAATATCTTCA+AGG | + | 50579:10433-10452 | MS.gene071614:intergenic | 15.0% |
| !!! | TAAAAGTATAATATCTTCAA+GGG | + | 50579:10432-10451 | MS.gene071614:intergenic | 15.0% |
| !! | AAAATCCTCTTAACAAAAAT+TGG | + | 50579:8041-8060 | MS.gene071614:intergenic | 20.0% |
| !! | AAGAATGATAAATTCACAAA+TGG | + | 50579:10284-10303 | MS.gene071614:intergenic | 20.0% |
| !! | ACAAGAATTTATGAATAATC+CGG | + | 50579:9749-9768 | MS.gene071614:intergenic | 20.0% |
| !! | TAAATTCATCATTACAAAAC+TGG | - | 50579:11334-11353 | MS.gene071614:intron | 20.0% |
| !! | TAGAGACTAAAAATTATTTG+TGG | - | 50579:9959-9978 | MS.gene071614:intron | 20.0% |
| !! | TCAATCTATCAAATATGATT+TGG | - | 50579:10762-10781 | MS.gene071614:intron | 20.0% |
| !! | TGTATGTCAATGATAATAAT+AGG | + | 50579:8069-8088 | MS.gene071614:intergenic | 20.0% |
| !!! | AAATCTCTTTTCTAATGAAT+GGG | - | 50579:8436-8455 | MS.gene071614:intron | 20.0% |
| !!! | AATTATTCTTTGGAAATTTG+TGG | - | 50579:8116-8135 | MS.gene071614:intron | 20.0% |
| !!! | CATTTTATTAACTTGAAAAG+TGG | + | 50579:10523-10542 | MS.gene071614:intergenic | 20.0% |
| !!! | GTTATGTGTTATAATTTTTG+TGG | - | 50579:7886-7905 | MS.gene071614:intron | 20.0% |
| !!! | TGCTAATGATTTTTTTTTTC+AGG | - | 50579:8667-8686 | MS.gene071614:intron | 20.0% |
| !!! | TTTTTCCAATTTTTGTTAAG+AGG | - | 50579:8033-8052 | MS.gene071614:intron | 20.0% |
| ! | AAAAAAATCATTAGCATCCA+TGG | + | 50579:8663-8682 | MS.gene071614:intergenic | 25.0% |
| ! | AAAATTACGACATTCCAATA+TGG | + | 50579:8622-8641 | MS.gene071614:intergenic | 25.0% |
| ! | AATTGAAGAATTAATGTCGA+AGG | - | 50579:8571-8590 | MS.gene071614:intron | 25.0% |
| ! | AATTTAGAGGACAGAAAATA+TGG | - | 50579:8540-8559 | MS.gene071614:intron | 25.0% |
| ! | ACAATTATATCCAAGTTTAC+AGG | + | 50579:8863-8882 | MS.gene071614:intergenic | 25.0% |
| ! | ATCAAAAAACCAATTTCCAA+CGG | + | 50579:10131-10150 | MS.gene071614:intergenic | 25.0% |
| ! | ATTGAAGAATTAATGTCGAA+GGG | - | 50579:8572-8591 | MS.gene071614:intron | 25.0% |
| ! | CTGAGAACAATAAAAAGAAA+GGG | + | 50579:10055-10074 | MS.gene071614:intergenic | 25.0% |
| ! | CTTAAAATCAACCCAATATT+CGG | - | 50579:10935-10954 | MS.gene071614:intron | 25.0% |
| ! | GGTCTATTATATTCACTTAT+AGG | - | 50579:10351-10370 | MS.gene071614:intron | 25.0% |
| ! | TCTGAGAACAATAAAAAGAA+AGG | + | 50579:10056-10075 | MS.gene071614:intergenic | 25.0% |
| ! | TGGAATGATTACATTTGAAA+TGG | - | 50579:10712-10731 | MS.gene071614:intron | 25.0% |
| ! | TTAAAATCAACCCAATATTC+GGG | - | 50579:10936-10955 | MS.gene071614:intron | 25.0% |
| ! | TTTGAGTCATTACAATTCAT+TGG | - | 50579:10665-10684 | MS.gene071614:intron | 25.0% |
| !! | AAAAAACACCATTCATTTTG+TGG | - | 50579:8143-8162 | MS.gene071614:intron | 25.0% |
| !! | AATCTTTTCCTCTTCTATTT+CGG | - | 50579:9906-9925 | MS.gene071614:CDS | 25.0% |
| !! | ATACAAGTTTTCTAACAGAA+AGG | + | 50579:9038-9057 | MS.gene071614:intergenic | 25.0% |
| !! | ATCCAATTATAATTTTCCCA+AGG | - | 50579:10451-10470 | MS.gene071614:CDS | 25.0% |
| !! | GAAATCTCTTTTCTAATGAA+TGG | - | 50579:8435-8454 | MS.gene071614:intron | 25.0% |
| !! | TAGAAAAACATTATTGGCTA+AGG | - | 50579:10312-10331 | MS.gene071614:intron | 25.0% |
| !! | TGTTTGAAAACTTTTCTTCA+GGG | - | 50579:7687-7706 | MS.gene071614:intron | 25.0% |
| !!! | ATGTTCAAGTATTTTGATCA+TGG | - | 50579:7577-7596 | MS.gene071614:intron | 25.0% |
| !!! | CTTTTGTTTATATTTGAGTC+CGG | - | 50579:10785-10804 | MS.gene071614:intron | 25.0% |
| !!! | GGGTTGATTTTAAGATTTAA+GGG | + | 50579:10929-10948 | MS.gene071614:intergenic | 25.0% |
| !!! | TAAGAATTTTAGTTCCATCA+TGG | + | 50579:11631-11650 | MS.gene071614:intergenic | 25.0% |
| !!! | TGGGTTGATTTTAAGATTTA+AGG | + | 50579:10930-10949 | MS.gene071614:intergenic | 25.0% |
| !!! | TGTTCAAGTATTTTGATCAT+GGG | - | 50579:7578-7597 | MS.gene071614:intron | 25.0% |
| !!! | TTGTTTTTCCATGTATTTTG+AGG | + | 50579:7772-7791 | MS.gene071614:intergenic | 25.0% |
| !!! | TTTATTAGTCTTTGCTAGTA+TGG | - | 50579:8410-8429 | MS.gene071614:intron | 25.0% |
| AACAATAAAAAGAAAGGGAG+AGG | + | 50579:10050-10069 | MS.gene071614:intergenic | 30.0% | |
| AAGAAAGAAGGTGAAATTTC+TGG | + | 50579:11467-11486 | MS.gene071614:intergenic | 30.0% | |
| AAGTGGTGCAATTAAAAAGA+AGG | + | 50579:10506-10525 | MS.gene071614:intergenic | 30.0% | |
| AATAAAGCTGAAGAAAATCC+TGG | - | 50579:7816-7835 | MS.gene071614:intron | 30.0% | |
| AATCAGAAAATTACCGAAGT+TGG | + | 50579:9142-9161 | MS.gene071614:intergenic | 30.0% | |
| AGATGGGAAATAAAAATGGA+AGG | + | 50579:11600-11619 | MS.gene071614:intergenic | 30.0% | |
| ATCACTCAAACATTTCACTT+TGG | + | 50579:8774-8793 | MS.gene071614:intergenic | 30.0% | |
| ATCAGAAAATTACCGAAGTT+GGG | + | 50579:9141-9160 | MS.gene071614:intergenic | 30.0% | |
| ATGTAGAACTGATATATCTG+GGG | - | 50579:8897-8916 | MS.gene071614:intron | 30.0% | |
| ATGTTGGATTGTATTGGAAT+AGG | - | 50579:11065-11084 | MS.gene071614:intron | 30.0% | |
| ATTCCAAAAATACCCTTTCA+CGG | + | 50579:10698-10717 | MS.gene071614:intergenic | 30.0% | |
| CAAAGTTATTGTCTTTCGTA+CGG | - | 50579:10225-10244 | MS.gene071614:intron | 30.0% | |
| CAAATGCTAAATGACATCAA+AGG | - | 50579:9703-9722 | MS.gene071614:intron | 30.0% | |
| CATGTAGAACTGATATATCT+GGG | - | 50579:8896-8915 | MS.gene071614:intron | 30.0% | |
| CCTAATATCACAACTTAAGA+TGG | + | 50579:11313-11332 | MS.gene071614:intergenic | 30.0% | |
| GAGTCAATCTAGATTTCATA+AGG | - | 50579:10566-10585 | MS.gene071614:intron | 30.0% | |
| GGAAATAAAAATGGAAGGAA+GGG | + | 50579:11595-11614 | MS.gene071614:intergenic | 30.0% | |
| GTATGAATTCACAAGTCAAT+TGG | + | 50579:8498-8517 | MS.gene071614:intergenic | 30.0% | |
| GTCCTTGGGAAAATTATAAT+TGG | + | 50579:10456-10475 | MS.gene071614:intergenic | 30.0% | |
| TAACTATCCAGTGTTCTATA+AGG | + | 50579:11199-11218 | MS.gene071614:intergenic | 30.0% | |
| TAAGGGATCATGATACAATA+GGG | + | 50579:10912-10931 | MS.gene071614:intergenic | 30.0% | |
| TATTCAATCATAGATGTCCA+TGG | - | 50579:8643-8662 | MS.gene071614:intron | 30.0% | |
| TCATGTAGAACTGATATATC+TGG | - | 50579:8895-8914 | MS.gene071614:intron | 30.0% | |
| TGACTCAAATGATCGATAAA+AGG | + | 50579:10654-10673 | MS.gene071614:intergenic | 30.0% | |
| TTAAGGGATCATGATACAAT+AGG | + | 50579:10913-10932 | MS.gene071614:intergenic | 30.0% | |
| TTCTTAAAATGAGACGATGT+AGG | + | 50579:11442-11461 | MS.gene071614:intergenic | 30.0% | |
| ! | AAATAGTTGGCTCATTCAAT+TGG | - | 50579:7550-7569 | MS.gene071614:intron | 30.0% |
| ! | ACATGATCGATCAAATTTTG+AGG | + | 50579:9248-9267 | MS.gene071614:intergenic | 30.0% |
| ! | CATTTCACTTTGGTAGATTT+TGG | + | 50579:8764-8783 | MS.gene071614:intergenic | 30.0% |
| ! | CCATCTTAAGTTGTGATATT+AGG | - | 50579:11310-11329 | MS.gene071614:intron | 30.0% |
| ! | CTGAAGAAAAGTTTTCAAAC+AGG | + | 50579:7688-7707 | MS.gene071614:intergenic | 30.0% |
| ! | CTGTTTGAAAACTTTTCTTC+AGG | - | 50579:7686-7705 | MS.gene071614:intron | 30.0% |
| ! | GCAAATGTACATTTTTCTTG+TGG | - | 50579:8332-8351 | MS.gene071614:intron | 30.0% |
| ! | TAATGCAGACTCAGTAATTT+TGG | + | 50579:10409-10428 | MS.gene071614:intergenic | 30.0% |
| !! | AATTTGTTGAGTGACTTGAA+TGG | - | 50579:11145-11164 | MS.gene071614:intron | 30.0% |
| !! | ACTGTACTATTTTAGAAGCA+CGG | + | 50579:9861-9880 | MS.gene071614:intergenic | 30.0% |
| !! | AGAGAGTGTCAAAATTACTT+TGG | + | 50579:9589-9608 | MS.gene071614:intergenic | 30.0% |
| !! | ATTGACGTCTTTGAAATTGT+AGG | - | 50579:9072-9091 | MS.gene071614:intron | 30.0% |
| !! | TAGATTTTGGAAACAAGCTT+TGG | + | 50579:8751-8770 | MS.gene071614:intergenic | 30.0% |
| !! | TGCTTCTAAAATAGTACAGT+TGG | - | 50579:9861-9880 | MS.gene071614:intron | 30.0% |
| !!! | TGTGCACAGATTTTTTTAAC+TGG | - | 50579:7920-7939 | MS.gene071614:intron | 30.0% |
| !!! | TTTTTTCAGGCTCTTTTATC+TGG | - | 50579:8680-8699 | MS.gene071614:intron | 30.0% |
| AAAAAGTTGTCTTAACCACC+TGG | - | 50579:9114-9133 | MS.gene071614:intron | 35.0% | |
| AAGGGATCATGATACAATAG+GGG | + | 50579:10911-10930 | MS.gene071614:intergenic | 35.0% | |
| ACGTCCATCAGTAATTGATT+TGG | - | 50579:11113-11132 | MS.gene071614:intron | 35.0% | |
| AGAGGTAAAACTATGGTTGT+TGG | - | 50579:8208-8227 | MS.gene071614:intron | 35.0% | |
| AGTTAAAGAGGTCATGTGTT+TGG | - | 50579:11038-11057 | MS.gene071614:intron | 35.0% | |
| AGTTCATCCTTATAGAACAC+TGG | - | 50579:11189-11208 | MS.gene071614:intron | 35.0% | |
| ATAGACCCAAAGAGTTGTAA+TGG | + | 50579:10338-10357 | MS.gene071614:intergenic | 35.0% | |
| CAATTATTCCAAGATCCATG+AGG | + | 50579:9521-9540 | MS.gene071614:intergenic | 35.0% | |
| CACACCAAATCAATTACTGA+TGG | + | 50579:11120-11139 | MS.gene071614:intergenic | 35.0% | |
| CCTCTTCTATTTCGGAAAAT+TGG | - | 50579:9914-9933 | MS.gene071614:CDS | 35.0% | |
| GAAAAACAACTACCATTCAC+TGG | - | 50579:7783-7802 | MS.gene071614:intron | 35.0% | |
| GAATCATGCCACAAAATGAA+TGG | + | 50579:8154-8173 | MS.gene071614:intergenic | 35.0% | |
| GAGTGTCAAAATTACTTTGG+AGG | + | 50579:9586-9605 | MS.gene071614:intergenic | 35.0% | |
| GCAGATTTCAGTACACATAT+GGG | + | 50579:7864-7883 | MS.gene071614:intergenic | 35.0% | |
| GCGAAGATGGGAAATAAAAA+TGG | + | 50579:11604-11623 | MS.gene071614:intergenic | 35.0% | |
| GGAAATACTGAGAGAGATAA+TGG | - | 50579:9935-9954 | MS.gene071614:CDS | 35.0% | |
| GGGAAATAAAAATGGAAGGA+AGG | + | 50579:11596-11615 | MS.gene071614:intergenic | 35.0% | |
| GGTTTCATGTTGGATTGTAT+TGG | - | 50579:11059-11078 | MS.gene071614:intron | 35.0% | |
| GTATCATGTTGAATGGCATT+GGG | - | 50579:11237-11256 | MS.gene071614:CDS | 35.0% | |
| GTGTTTGGTATCATGTTGAA+TGG | - | 50579:11230-11249 | MS.gene071614:CDS | 35.0% | |
| GTTGGATTACTCTATTATCC+TGG | - | 50579:8226-8245 | MS.gene071614:intron | 35.0% | |
| GTTGGTTAAACTAGAAGCTA+TGG | + | 50579:9418-9437 | MS.gene071614:intergenic | 35.0% | |
| TAAAAATGGAAGGAAGGGTA+AGG | + | 50579:11590-11609 | MS.gene071614:intergenic | 35.0% | |
| TAAGGCCATTACAACTCTTT+GGG | - | 50579:10330-10349 | MS.gene071614:intron | 35.0% | |
| TAAGGTAAATGTCAACCTTG+TGG | + | 50579:11572-11591 | MS.gene071614:intergenic | 35.0% | |
| TAGGAATATCATCACTGCAA+AGG | + | 50579:11661-11680 | MS.gene071614:intergenic | 35.0% | |
| TATATACCACAAACACCAGT+TGG | + | 50579:9436-9455 | MS.gene071614:intergenic | 35.0% | |
| TCATGCATACCATGTTGTTA+AGG | + | 50579:9828-9847 | MS.gene071614:intergenic | 35.0% | |
| TCCAATATGGAAAACCTTGT+TGG | + | 50579:8609-8628 | MS.gene071614:intergenic | 35.0% | |
| TGTAGAACTGATATATCTGG+GGG | - | 50579:8898-8917 | MS.gene071614:intron | 35.0% | |
| TTGCTCAATAATCCAGTGAA+TGG | + | 50579:7798-7817 | MS.gene071614:intergenic | 35.0% | |
| TTTAGAAAAACTACTCGACG+CGG | - | 50579:7744-7763 | MS.gene071614:intron | 35.0% | |
| ! | AAATCAATTACTGATGGACG+TGG | + | 50579:11114-11133 | MS.gene071614:intergenic | 35.0% |
| ! | ACTTTGGAGGATCTGAATTT+GGG | + | 50579:9573-9592 | MS.gene071614:intergenic | 35.0% |
| ! | AGGTGGTTAAGACAACTTTT+TGG | + | 50579:9115-9134 | MS.gene071614:intergenic | 35.0% |
| ! | ATGTACATTTTTCTTGTGGC+AGG | - | 50579:8336-8355 | MS.gene071614:intron | 35.0% |
| ! | ATTTTCGTGCTTTACAGTGT+TGG | - | 50579:11520-11539 | MS.gene071614:intron | 35.0% |
| ! | CAAACATGATTTGTATGACC+AGG | + | 50579:8247-8266 | MS.gene071614:intergenic | 35.0% |
| ! | CCAATTTTCCGAAATAGAAG+AGG | + | 50579:9917-9936 | MS.gene071614:intergenic | 35.0% |
| ! | TACTTTGGAGGATCTGAATT+TGG | + | 50579:9574-9593 | MS.gene071614:intergenic | 35.0% |
| ! | TCATGTGTTTGGTTTCATGT+TGG | - | 50579:11049-11068 | MS.gene071614:intron | 35.0% |
| ! | TCTAAAGACACAAGTTCTGA+TGG | + | 50579:7730-7749 | MS.gene071614:intergenic | 35.0% |
| ! | TTGAAAACTTTTCTTCAGGG+AGG | - | 50579:7690-7709 | MS.gene071614:intron | 35.0% |
| ! | TTTTCAACGACTTCTCAATC+CGG | - | 50579:9727-9746 | MS.gene071614:intron | 35.0% |
| !! | ATTAGTCTTTGCTAGTATGG+AGG | - | 50579:8413-8432 | MS.gene071614:intron | 35.0% |
| !! | TAGCTTCTAGTTTAACCAAC+TGG | - | 50579:9418-9437 | MS.gene071614:CDS | 35.0% |
| !! | TCAGTAATTGATTTGGTGTG+TGG | - | 50579:11120-11139 | MS.gene071614:intron | 35.0% |
| !! | TTGTTTTGCTCATTGCCAAT+CGG | - | 50579:9765-9784 | MS.gene071614:intron | 35.0% |
| !!! | AGTATTTTGATCATGGGTCT+CGG | - | 50579:7584-7603 | MS.gene071614:intron | 35.0% |
| AAATGAGACGATGTAGGCAT+TGG | + | 50579:11436-11455 | MS.gene071614:intergenic | 40.0% | |
| AAGTTTACAGGCAATGATGC+AGG | + | 50579:8851-8870 | MS.gene071614:intergenic | 40.0% | |
| AATCGGAGAGACAAGATACA+TGG | - | 50579:9782-9801 | MS.gene071614:intron | 40.0% | |
| ACATTGAGGAATCTCTTTGG+AGG | - | 50579:8925-8944 | MS.gene071614:intron | 40.0% | |
| ACCCTTCAGGCATAGAATAT+GGG | + | 50579:10479-10498 | MS.gene071614:intergenic | 40.0% | |
| AGGGATCATGATACAATAGG+GGG | + | 50579:10910-10929 | MS.gene071614:intergenic | 40.0% | |
| AGGGTAAAAGGGAAAAAACC+AGG | + | 50579:7837-7856 | MS.gene071614:intergenic | 40.0% | |
| AGGTTGAAGTTGAACTACTG+TGG | - | 50579:10833-10852 | MS.gene071614:intron | 40.0% | |
| AGTTTCACGTAAAGTAGACG+AGG | + | 50579:11403-11422 | MS.gene071614:intergenic | 40.0% | |
| ATATGGGTGGAAGGGTAAAA+GGG | + | 50579:7848-7867 | MS.gene071614:intergenic | 40.0% | |
| ATGTATCTTGTCTCTCCGAT+TGG | + | 50579:9783-9802 | MS.gene071614:intergenic | 40.0% | |
| ATTGGTAGAACTCCGTGAAA+GGG | - | 50579:10683-10702 | MS.gene071614:intron | 40.0% | |
| CACACATTGAGGAATCTCTT+TGG | - | 50579:8922-8941 | MS.gene071614:intron | 40.0% | |
| CACTGGATAGTTAAGAGAGT+TGG | - | 50579:11206-11225 | MS.gene071614:CDS | 40.0% | |
| CATACCATGTTGTTAAGGAG+GGG | + | 50579:9823-9842 | MS.gene071614:intergenic | 40.0% | |
| CATCATGGAATTGCGAAGAT+GGG | + | 50579:11616-11635 | MS.gene071614:intergenic | 40.0% | |
| CGCAGATTTCAGTACACATA+TGG | + | 50579:7865-7884 | MS.gene071614:intergenic | 40.0% | |
| CGTCTACTTTACGTGAAACT+TGG | - | 50579:11403-11422 | MS.gene071614:CDS | 40.0% | |
| CTAAGGCCATTACAACTCTT+TGG | - | 50579:10329-10348 | MS.gene071614:intron | 40.0% | |
| CTCACTTGAAGACCAGATTA+TGG | + | 50579:10204-10223 | MS.gene071614:intergenic | 40.0% | |
| GAAAACACAAGTACTCTCTC+CGG | + | 50579:10807-10826 | MS.gene071614:intergenic | 40.0% | |
| GAAACAGCGGATAGTTAAAG+AGG | - | 50579:11026-11045 | MS.gene071614:intron | 40.0% | |
| GAATATCATCACTGCAAAGG+AGG | + | 50579:11658-11677 | MS.gene071614:intergenic | 40.0% | |
| GAGAGCTTTCATCATAGCAA+AGG | + | 50579:9990-10009 | MS.gene071614:intergenic | 40.0% | |
| GATTTCAGTACACATATGGG+TGG | + | 50579:7861-7880 | MS.gene071614:intergenic | 40.0% | |
| GCAATGAAATCTTCTGTCAG+TGG | - | 50579:9007-9026 | MS.gene071614:CDS | 40.0% | |
| GCATACCATGTTGTTAAGGA+GGG | + | 50579:9824-9843 | MS.gene071614:intergenic | 40.0% | |
| GGACAGAAATCAAGAAACAG+CGG | - | 50579:11013-11032 | MS.gene071614:intron | 40.0% | |
| GGTATCATGTTGAATGGCAT+TGG | - | 50579:11236-11255 | MS.gene071614:CDS | 40.0% | |
| GTAGAACTGATATATCTGGG+GGG | - | 50579:8899-8918 | MS.gene071614:intron | 40.0% | |
| GTGAAATGTTTGAGTGATGC+TGG | - | 50579:8776-8795 | MS.gene071614:intron | 40.0% | |
| GTTGAGTGACTTGAATGGAT+AGG | - | 50579:11150-11169 | MS.gene071614:intron | 40.0% | |
| GTTTAACCAACTGGTGTTTG+TGG | - | 50579:9427-9446 | MS.gene071614:CDS | 40.0% | |
| TGAATGCAGCTTATGATGCA+TGG | - | 50579:9288-9307 | MS.gene071614:intron | 40.0% | |
| TGACAATACCTGCCATAATC+TGG | - | 50579:10189-10208 | MS.gene071614:intron | 40.0% | |
| TGCATACCATGTTGTTAAGG+AGG | + | 50579:9825-9844 | MS.gene071614:intergenic | 40.0% | |
| TGCATCATTGCCTGTAAACT+TGG | - | 50579:8850-8869 | MS.gene071614:intron | 40.0% | |
| TGGTGTCTGGATAATTTGGT+GGG | - | 50579:11262-11281 | MS.gene071614:intron | 40.0% | |
| TGTGAATTCATACCCCTTTC+AGG | - | 50579:8505-8524 | MS.gene071614:intron | 40.0% | |
| TGTTTGGATGGAACTTTACC+TGG | - | 50579:7494-7513 | MS.gene071614:CDS | 40.0% | |
| ! | AAAACTTTTCTTCAGGGAGG+AGG | - | 50579:7693-7712 | MS.gene071614:intron | 40.0% |
| ! | ATGTTGAATGGCATTGGGTT+TGG | - | 50579:11242-11261 | MS.gene071614:CDS | 40.0% |
| ! | ATTATGGCAGGTATTGTCAC+AGG | + | 50579:10188-10207 | MS.gene071614:intergenic | 40.0% |
| ! | GCCAACAAGGTTTTCCATAT+TGG | - | 50579:8605-8624 | MS.gene071614:intron | 40.0% |
| ! | TAGTTGGCTCATTCAATTGG+AGG | - | 50579:7553-7572 | MS.gene071614:intron | 40.0% |
| ! | TCTTTTATCTGGATGCTCTG+CGG | - | 50579:8691-8710 | MS.gene071614:intron | 40.0% |
| ! | TGAATGGGCTCTTCTTAAGA+AGG | - | 50579:8451-8470 | MS.gene071614:intron | 40.0% |
| ! | TTATGGCAGGTATTGTCACA+GGG | + | 50579:10187-10206 | MS.gene071614:intergenic | 40.0% |
| ! | TTGGTGTCTGGATAATTTGG+TGG | - | 50579:11261-11280 | MS.gene071614:intron | 40.0% |
| ! | TTTGTTTCCTCGAAGTGCTA+TGG | - | 50579:9384-9403 | MS.gene071614:CDS | 40.0% |
| ! | TTTTTCTTGTGGCAGGAAGA+AGG | - | 50579:8343-8362 | MS.gene071614:intron | 40.0% |
| !! | GGTTTGGTGTCTGGATAATT+TGG | - | 50579:11258-11277 | MS.gene071614:intron | 40.0% |
| !! | GTTAAGAGAGTTGGTGTGTT+TGG | - | 50579:11215-11234 | MS.gene071614:CDS | 40.0% |
| !! | TCAAAGTGAGGTACTGTGAT+GGG | - | 50579:7950-7969 | MS.gene071614:intron | 40.0% |
| !!! | ACTCCGTGAAAGGGTATTTT+TGG | - | 50579:10692-10711 | MS.gene071614:intron | 40.0% |
| !!! | GAGAGAGTACTTGTGTTTTC+GGG | - | 50579:10807-10826 | MS.gene071614:intron | 40.0% |
| !!! | GGAGAGAGTACTTGTGTTTT+CGG | - | 50579:10806-10825 | MS.gene071614:intron | 40.0% |
| AAATTACCGAAGTTGGGTCC+AGG | + | 50579:9135-9154 | MS.gene071614:intergenic | 45.0% | |
| ACCCCATATTCTATGCCTGA+AGG | - | 50579:10474-10493 | MS.gene071614:CDS | 45.0% | |
| ACGAGGTCAGTGAGATAGTA+TGG | - | 50579:7998-8017 | MS.gene071614:intron | 45.0% | |
| ACGCGGTTCCTCAAAATACA+TGG | - | 50579:7761-7780 | MS.gene071614:intron | 45.0% | |
| ACGTGGATGGATGTATTCAG+AGG | + | 50579:11097-11116 | MS.gene071614:intergenic | 45.0% | |
| ACTGGAACAGAGTCAAAGTG+AGG | - | 50579:7938-7957 | MS.gene071614:intron | 45.0% | |
| ATCCATACCATAGCACTTCG+AGG | + | 50579:9394-9413 | MS.gene071614:intergenic | 45.0% | |
| ATTTGCACCAGATCCAGATC+CGG | + | 50579:7534-7553 | MS.gene071614:intergenic | 45.0% | |
| CACCCTTCAGGCATAGAATA+TGG | + | 50579:10480-10499 | MS.gene071614:intergenic | 45.0% | |
| CAGTACACATATGGGTGGAA+GGG | + | 50579:7856-7875 | MS.gene071614:intergenic | 45.0% | |
| CATATGGGTGGAAGGGTAAA+AGG | + | 50579:7849-7868 | MS.gene071614:intergenic | 45.0% | |
| CATATTCTATGCCTGAAGGG+TGG | - | 50579:10478-10497 | MS.gene071614:CDS | 45.0% | |
| CATTGGTAGAACTCCGTGAA+AGG | - | 50579:10682-10701 | MS.gene071614:intron | 45.0% | |
| CCATCATGGAATTGCGAAGA+TGG | + | 50579:11617-11636 | MS.gene071614:intergenic | 45.0% | |
| CCATCTTCGCAATTCCATGA+TGG | - | 50579:11614-11633 | MS.gene071614:intron | 45.0% | |
| CCCCATATTCTATGCCTGAA+GGG | - | 50579:10475-10494 | MS.gene071614:CDS | 45.0% | |
| CCCTTCAGGCATAGAATATG+GGG | + | 50579:10478-10497 | MS.gene071614:intergenic | 45.0% | |
| CTGGATCTGGTGCAAATAGT+TGG | - | 50579:7537-7556 | MS.gene071614:intron | 45.0% | |
| CTTGAAGACCAGATTATGGC+AGG | + | 50579:10200-10219 | MS.gene071614:intergenic | 45.0% | |
| GAACTTCTGGCCCGAATATT+GGG | + | 50579:10949-10968 | MS.gene071614:intergenic | 45.0% | |
| GCATAGAATATGGGGTCCTT+GGG | + | 50579:10470-10489 | MS.gene071614:intergenic | 45.0% | |
| GCTGCACAGCTTCAATTTAG+AGG | - | 50579:8527-8546 | MS.gene071614:intron | 45.0% | |
| TCAGTACACATATGGGTGGA+AGG | + | 50579:7857-7876 | MS.gene071614:intergenic | 45.0% | |
| TGGTAGACTCTCAATCCACA+AGG | - | 50579:11554-11573 | MS.gene071614:intron | 45.0% | |
| TTGCGATTGCCGTTGGAAAT+TGG | - | 50579:10119-10138 | MS.gene071614:intron | 45.0% | |
| TTTCCAACGGCAATCGCAAT+TGG | + | 50579:10118-10137 | MS.gene071614:intergenic | 45.0% | |
| TTTCCTTTCCAACACCACGT+AGG | - | 50579:10984-11003 | MS.gene071614:intron | 45.0% | |
| ! | CAATTACTGATGGACGTGGA+TGG | + | 50579:11110-11129 | MS.gene071614:intergenic | 45.0% |
| ! | CTTTTATCTGGATGCTCTGC+GGG | - | 50579:8692-8711 | MS.gene071614:intron | 45.0% |
| ! | TATGGCAGGTATTGTCACAG+GGG | + | 50579:10186-10205 | MS.gene071614:intergenic | 45.0% |
| ! | TGGAGGTGTAGTTAGCTTAC+AGG | - | 50579:8942-8961 | MS.gene071614:intron | 45.0% |
| ! | TGTGGATTGAGAGTCTACCA+TGG | + | 50579:11554-11573 | MS.gene071614:intergenic | 45.0% |
| ! | TTCCTCGAAGTGCTATGGTA+TGG | - | 50579:9389-9408 | MS.gene071614:CDS | 45.0% |
| !! | AAGGAAAGCAGTGGACTACT+CGG | + | 50579:10971-10990 | MS.gene071614:intergenic | 45.0% |
| !! | CAAAGTGAGGTACTGTGATG+GGG | - | 50579:7951-7970 | MS.gene071614:intron | 45.0% |
| !! | CAGTGTTGGTAAATCTGCCA+TGG | - | 50579:11534-11553 | MS.gene071614:intron | 45.0% |
| !! | GTACTTGTGTTTTCGGGCTT+AGG | - | 50579:10813-10832 | MS.gene071614:intron | 45.0% |
| !! | GTCAAAGTGAGGTACTGTGA+TGG | - | 50579:7949-7968 | MS.gene071614:intron | 45.0% |
| AATGCGGGGCTAGACTTTCT+TGG | + | 50579:9490-9509 | MS.gene071614:intergenic | 50.0% | |
| ATGAGGATCTGCTGAATGCG+GGG | + | 50579:9504-9523 | MS.gene071614:intergenic | 50.0% | |
| CAGCAGATCCTCATGGATCT+TGG | - | 50579:9510-9529 | MS.gene071614:intron | 50.0% | |
| CAGTGGAGACAGTCAAAACG+AGG | - | 50579:7981-8000 | MS.gene071614:intron | 50.0% | |
| CATGAGGATCTGCTGAATGC+GGG | + | 50579:9505-9524 | MS.gene071614:intergenic | 50.0% | |
| CCAACACCACGTAGGTGATT+CGG | - | 50579:10992-11011 | MS.gene071614:intron | 50.0% | |
| CCATGAGGATCTGCTGAATG+CGG | + | 50579:9506-9525 | MS.gene071614:intergenic | 50.0% | |
| CGGGAATATAGCATGGAGGT+AGG | + | 50579:11680-11699 | MS.gene071614:intergenic | 50.0% | |
| CTCTCCCCTCCTTAACAACA+TGG | - | 50579:9816-9835 | MS.gene071614:intron | 50.0% | |
| GCTGCATTCAGCAGAAACAG+TGG | + | 50579:9278-9297 | MS.gene071614:intergenic | 50.0% | |
| GGAACTTCTGGCCCGAATAT+TGG | + | 50579:10950-10969 | MS.gene071614:intergenic | 50.0% | |
| GGCATAGAATATGGGGTCCT+TGG | + | 50579:10471-10490 | MS.gene071614:intergenic | 50.0% | |
| GGGAATGAAGAACGCCAACA+AGG | - | 50579:8592-8611 | MS.gene071614:intron | 50.0% | |
| GGTGGGGAGAGGTAAAACTA+TGG | - | 50579:8201-8220 | MS.gene071614:intron | 50.0% | |
| TAACCACCTGGACCCAACTT+CGG | - | 50579:9126-9145 | MS.gene071614:intron | 50.0% | |
| TGAAGCTGTGCAGCCTGAAA+GGG | + | 50579:8521-8540 | MS.gene071614:intergenic | 50.0% | |
| TGCAGCTTATGATGCATGGC+AGG | - | 50579:9292-9311 | MS.gene071614:intron | 50.0% | |
| TGTGGAGCGGGAATATAGCA+TGG | + | 50579:11687-11706 | MS.gene071614:intergenic | 50.0% | |
| TTCTGTCCGAATCACCTACG+TGG | + | 50579:11001-11020 | MS.gene071614:intergenic | 50.0% | |
| TTGAAGCTGTGCAGCCTGAA+AGG | + | 50579:8522-8541 | MS.gene071614:intergenic | 50.0% | |
| TTTGCACCAGATCCAGATCC+GGG | + | 50579:7533-7552 | MS.gene071614:intergenic | 50.0% | |
| ! | CTTTTCTTCAGGGAGGAGGA+TGG | - | 50579:7697-7716 | MS.gene071614:intron | 50.0% |
| ! | GGTGTTGGAAAGGAAAGCAG+TGG | + | 50579:10980-10999 | MS.gene071614:intergenic | 50.0% |
| ! | TCACCTACGTGGTGTTGGAA+AGG | + | 50579:10990-11009 | MS.gene071614:intergenic | 50.0% |
| !! | AAAAGAAGGCACCACCCTTC+AGG | + | 50579:10492-10511 | MS.gene071614:intergenic | 50.0% |
| !! | AGTGGACTACTCGGAACTTC+TGG | + | 50579:10962-10981 | MS.gene071614:intergenic | 50.0% |
| !! | ATGGCATTGGGTTTGGTGTC+TGG | - | 50579:11249-11268 | MS.gene071614:CDS | 50.0% |
| ATCCAGATCCGGGATGGAAG+TGG | + | 50579:7523-7542 | MS.gene071614:intergenic | 55.0% | |
| ATTACCTCACGCAGCCTGCT+GGG | - | 50579:8179-8198 | MS.gene071614:intron | 55.0% | |
| CAGCCAATTGCGATTGCCGT+TGG | - | 50579:10112-10131 | MS.gene071614:intron | 55.0% | |
| CAGGCAATGATGCAGGCTAG+AGG | + | 50579:8844-8863 | MS.gene071614:intergenic | 55.0% | |
| CCGAATCACCTACGTGGTGT+TGG | + | 50579:10995-11014 | MS.gene071614:intergenic | 55.0% | |
| CCGCATTCAGCAGATCCTCA+TGG | - | 50579:9503-9522 | MS.gene071614:intron | 55.0% | |
| CCTGGTTACCACTTCCATCC+CGG | - | 50579:7512-7531 | MS.gene071614:CDS | 55.0% | |
| GAAGCTGTGCAGCCTGAAAG+GGG | + | 50579:8520-8539 | MS.gene071614:intergenic | 55.0% | |
| GGAGCGGGAATATAGCATGG+AGG | + | 50579:11684-11703 | MS.gene071614:intergenic | 55.0% | |
| TACCACTTCCATCCCGGATC+TGG | - | 50579:7518-7537 | MS.gene071614:intron | 55.0% | |
| TATTACCTCACGCAGCCTGC+TGG | - | 50579:8178-8197 | MS.gene071614:intron | 55.0% | |
| TTACCGAAGTTGGGTCCAGG+TGG | + | 50579:9132-9151 | MS.gene071614:intergenic | 55.0% | |
| TTATCTGGATGCTCTGCGGG+TGG | - | 50579:8695-8714 | MS.gene071614:intron | 55.0% | |
| TTCCATCCCGGATCTGGATC+TGG | - | 50579:7524-7543 | MS.gene071614:intron | 55.0% | |
| ! | TATCTGGGGGGCACACATTG+AGG | - | 50579:8911-8930 | MS.gene071614:intron | 55.0% |
| ! | TGTGATGGGGCGTCTTTCAG+TGG | - | 50579:7964-7983 | MS.gene071614:intron | 55.0% |
| CACCAGATCCAGATCCGGGA+TGG | + | 50579:7529-7548 | MS.gene071614:intergenic | 60.0% | |
| CCGGGATGGAAGTGGTAACC+AGG | + | 50579:7515-7534 | MS.gene071614:intergenic | 60.0% | |
| TTACCTCACGCAGCCTGCTG+GGG | - | 50579:8180-8199 | MS.gene071614:intron | 60.0% | |
| TGGATGCTCTGCGGGTGGTC+TGG | - | 50579:8700-8719 | MS.gene071614:intron | 65.0% | |
| TTACCTCTCCCCACCCCAGC+AGG | + | 50579:8196-8215 | MS.gene071614:intergenic | 65.0% | |
| CTCACGCAGCCTGCTGGGGT+GGG | - | 50579:8184-8203 | MS.gene071614:intron | 70.0% | |
| TCACGCAGCCTGCTGGGGTG+GGG | - | 50579:8185-8204 | MS.gene071614:intron | 70.0% | |
| CAGCCTGCTGGGGTGGGGAG+AGG | - | 50579:8190-8209 | MS.gene071614:intron | 75.0% | |
| CCACCCCAGCAGGCTGCGTG+AGG | + | 50579:8186-8205 | MS.gene071614:intergenic | 75.0% | |
| CCTCACGCAGCCTGCTGGGG+TGG | - | 50579:8183-8202 | MS.gene071614:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50579 | gene | 7492 | 11708 | 7492 | ID=MS.gene071614 |
| 50579 | mRNA | 7492 | 11708 | 7492 | ID=MS.gene071614.t1;Parent=MS.gene071614 |
| 50579 | exon | 11626 | 11708 | 11626 | ID=MS.gene071614.t1.exon1;Parent=MS.gene071614.t1 |
| 50579 | CDS | 11626 | 11708 | 11626 | ID=cds.MS.gene071614.t1;Parent=MS.gene071614.t1 |
| 50579 | exon | 11363 | 11492 | 11363 | ID=MS.gene071614.t1.exon2;Parent=MS.gene071614.t1 |
| 50579 | CDS | 11363 | 11492 | 11363 | ID=cds.MS.gene071614.t1;Parent=MS.gene071614.t1 |
| 50579 | exon | 11198 | 11271 | 11198 | ID=MS.gene071614.t1.exon3;Parent=MS.gene071614.t1 |
| 50579 | CDS | 11198 | 11271 | 11198 | ID=cds.MS.gene071614.t1;Parent=MS.gene071614.t1 |
| 50579 | exon | 10587 | 10673 | 10587 | ID=MS.gene071614.t1.exon4;Parent=MS.gene071614.t1 |
| 50579 | CDS | 10587 | 10673 | 10587 | ID=cds.MS.gene071614.t1;Parent=MS.gene071614.t1 |
| 50579 | exon | 10387 | 10511 | 10387 | ID=MS.gene071614.t1.exon5;Parent=MS.gene071614.t1 |
| 50579 | CDS | 10387 | 10511 | 10387 | ID=cds.MS.gene071614.t1;Parent=MS.gene071614.t1 |
| 50579 | exon | 10237 | 10297 | 10237 | ID=MS.gene071614.t1.exon6;Parent=MS.gene071614.t1 |
| 50579 | CDS | 10237 | 10297 | 10237 | ID=cds.MS.gene071614.t1;Parent=MS.gene071614.t1 |
| 50579 | exon | 10053 | 10106 | 10053 | ID=MS.gene071614.t1.exon7;Parent=MS.gene071614.t1 |
| 50579 | CDS | 10053 | 10106 | 10053 | ID=cds.MS.gene071614.t1;Parent=MS.gene071614.t1 |
| 50579 | exon | 9887 | 9964 | 9887 | ID=MS.gene071614.t1.exon8;Parent=MS.gene071614.t1 |
| 50579 | CDS | 9887 | 9964 | 9887 | ID=cds.MS.gene071614.t1;Parent=MS.gene071614.t1 |
| 50579 | exon | 9610 | 9715 | 9610 | ID=MS.gene071614.t1.exon9;Parent=MS.gene071614.t1 |
| 50579 | CDS | 9610 | 9715 | 9610 | ID=cds.MS.gene071614.t1;Parent=MS.gene071614.t1 |
| 50579 | exon | 9363 | 9508 | 9363 | ID=MS.gene071614.t1.exon10;Parent=MS.gene071614.t1 |
| 50579 | CDS | 9363 | 9508 | 9363 | ID=cds.MS.gene071614.t1;Parent=MS.gene071614.t1 |
| 50579 | exon | 8982 | 9085 | 8982 | ID=MS.gene071614.t1.exon11;Parent=MS.gene071614.t1 |
| 50579 | CDS | 8982 | 9085 | 8982 | ID=cds.MS.gene071614.t1;Parent=MS.gene071614.t1 |
| 50579 | exon | 7625 | 7663 | 7625 | ID=MS.gene071614.t1.exon12;Parent=MS.gene071614.t1 |
| 50579 | CDS | 7625 | 7663 | 7625 | ID=cds.MS.gene071614.t1;Parent=MS.gene071614.t1 |
| 50579 | exon | 7492 | 7533 | 7492 | ID=MS.gene071614.t1.exon13;Parent=MS.gene071614.t1 |
| 50579 | CDS | 7492 | 7533 | 7492 | ID=cds.MS.gene071614.t1;Parent=MS.gene071614.t1 |
| Gene Sequence |
| Protein sequence |
