AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050986


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050986.t1 MTR_8g023790 99.588 243 1 0 1 243 26 268 0.0 498
MS.gene050986.t1 MTR_2g042720 67.281 217 71 0 25 241 49 265 3.39e-106 308
MS.gene050986.t1 MTR_3g435460 49.791 239 111 4 4 241 20 250 1.29e-74 227
MS.gene050986.t1 MTR_3g435460 56.383 188 76 2 54 241 8 189 1.01e-69 213
MS.gene050986.t1 MTR_3g101670 50.237 211 100 4 30 237 51 259 8.40e-66 205
MS.gene050986.t1 MTR_5g098780 43.096 239 111 7 25 240 36 272 2.05e-52 171
MS.gene050986.t1 MTR_5g098785 42.500 240 112 7 25 240 37 274 3.37e-52 171
MS.gene050986.t1 MTR_6g033320 40.284 211 98 7 41 242 49 240 1.81e-40 139
MS.gene050986.t1 MTR_6g011880 36.704 267 117 12 7 238 13 262 1.89e-38 135
MS.gene050986.t1 MTR_6g011870 36.330 267 118 12 7 238 13 262 7.65e-38 133
MS.gene050986.t1 MTR_4g094605 34.496 258 124 9 3 231 9 250 9.11e-37 130
MS.gene050986.t1 MTR_6g011890 36.090 266 118 12 8 238 14 262 1.15e-36 130
MS.gene050986.t1 MTR_5g097280 36.179 246 118 10 9 231 20 249 4.79e-36 129
MS.gene050986.t1 MTR_6g012110 34.884 258 122 10 3 231 9 249 5.11e-36 128
MS.gene050986.t1 MTR_6g012080 34.496 258 123 10 3 231 9 249 1.16e-35 127
MS.gene050986.t1 MTR_4g015570 30.435 299 121 6 6 241 13 287 3.55e-35 127
MS.gene050986.t1 MTR_1g026550 31.008 258 153 5 8 241 72 328 1.50e-34 126
MS.gene050986.t1 MTR_2g008610 37.668 223 106 6 13 212 36 248 7.74e-34 122
MS.gene050986.t1 MTR_2g081090 34.274 248 124 10 7 231 17 248 2.07e-33 122
MS.gene050986.t1 MTR_2g081090 35.814 215 104 8 36 231 22 221 4.56e-33 120
MS.gene050986.t1 MTR_6g060175 38.140 215 96 7 36 231 74 270 4.34e-31 116
MS.gene050986.t1 MTR_6g043600 37.634 186 92 6 48 231 50 213 2.09e-27 105
MS.gene050986.t1 MTR_6g060175 35.814 215 91 8 36 231 74 260 7.45e-26 102
MS.gene050986.t1 MTR_3g070340 31.535 241 87 7 35 221 54 270 6.64e-25 99.8
MS.gene050986.t1 MTR_5g098770 47.945 73 37 1 169 241 21 92 5.87e-17 73.9
MS.gene050986.t1 MTR_2g436960 46.667 90 42 2 152 241 16 99 1.76e-16 73.2
MS.gene050986.t1 MTR_1g026550 32.061 131 74 3 8 123 72 202 1.12e-14 71.6
MS.gene050986.t1 MTR_0003s0060 41.667 96 50 2 146 241 3 92 1.55e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050986.t1 AT3G61470 89.778 225 22 1 20 243 33 257 1.03e-148 415
MS.gene050986.t1 AT1G19150 61.751 217 83 0 25 241 52 268 2.50e-101 295
MS.gene050986.t1 AT3G47470 52.315 216 97 2 26 241 42 251 5.02e-75 228
MS.gene050986.t1 AT5G28450 91.262 103 9 0 141 243 71 173 1.23e-65 201
MS.gene050986.t1 AT1G45474 46.154 234 114 4 15 237 16 248 1.42e-63 199
MS.gene050986.t1 AT1G45474 46.154 234 114 4 15 237 16 248 1.42e-63 199
MS.gene050986.t1 AT1G61520 41.732 254 123 8 10 240 19 270 8.85e-54 174
MS.gene050986.t1 AT1G61520 41.732 254 123 8 10 240 19 270 8.85e-54 174
MS.gene050986.t1 AT1G61520 43.627 204 96 7 54 240 14 215 3.64e-44 148
MS.gene050986.t1 AT3G54890 42.439 205 90 7 41 236 48 233 1.21e-41 142
MS.gene050986.t1 AT1G29930 36.653 251 129 9 3 231 9 251 3.74e-38 134
MS.gene050986.t1 AT2G34420 35.887 248 133 8 3 231 9 249 4.13e-38 134
MS.gene050986.t1 AT1G15820 37.500 224 111 5 12 212 28 245 5.80e-38 133
MS.gene050986.t1 AT2G05100 36.667 240 115 9 13 231 26 249 1.13e-37 133
MS.gene050986.t1 AT2G05070 38.785 214 97 8 36 231 52 249 1.16e-37 133
MS.gene050986.t1 AT1G29920 36.255 251 130 9 3 231 9 251 2.06e-37 132
MS.gene050986.t1 AT1G29910 36.255 251 130 9 3 231 9 251 2.06e-37 132
MS.gene050986.t1 AT2G34430 35.600 250 132 8 3 231 9 250 8.58e-37 130
MS.gene050986.t1 AT3G27690 39.512 205 108 6 36 231 53 250 1.37e-36 130
MS.gene050986.t1 AT3G27690 39.512 205 108 6 36 231 85 282 1.77e-36 130
MS.gene050986.t1 AT5G01530 32.432 259 97 5 37 241 54 288 5.83e-34 124
MS.gene050986.t1 AT5G54270 38.308 201 92 7 48 231 64 249 9.09e-34 122
MS.gene050986.t1 AT3G08940 32.432 259 97 5 37 241 51 285 5.59e-33 121
MS.gene050986.t1 AT1G76570 35.185 216 124 5 37 238 110 323 1.39e-32 121
MS.gene050986.t1 AT4G10340 39.706 204 108 7 36 231 65 261 6.17e-31 115
MS.gene050986.t1 AT3G54890 37.073 205 67 6 41 236 48 199 2.89e-29 109
MS.gene050986.t1 AT3G54890 39.286 168 75 6 41 200 48 196 7.58e-29 108
MS.gene050986.t1 AT2G05100 32.031 256 130 11 13 243 26 262 4.97e-28 108
MS.gene050986.t1 AT2G40100 31.818 242 86 6 37 224 55 271 9.18e-26 102
MS.gene050986.t1 AT3G54890 58.333 60 25 0 41 100 48 107 5.68e-18 79.0
MS.gene050986.t1 AT3G08940 31.707 123 35 2 37 116 51 167 2.69e-11 62.0

Find 79 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGATCTTTGTTAGGAATTC+TGG 0.125070 8.3:-68429070 None:intergenic
GGCAGTCTCCCAGGAGATTT+TGG 0.155478 8.3:+68428343 MS.gene050986:CDS
CATGGAGGAGGGGTGCTTCC+TGG 0.289446 8.3:-68428313 None:intergenic
TTGGTTTGATCCACTTGGTT+GGG 0.309908 8.3:+68429300 MS.gene050986:CDS
TTCCTGTGAGCTTGTTGTTC+GGG 0.337815 8.3:-68429252 None:intergenic
TTTGCTCACCTTGCTGATCC+TGG 0.353914 8.3:+68429454 MS.gene050986:CDS
GATCCACTTGGTTGGGGAAG+TGG 0.368672 8.3:+68429307 MS.gene050986:CDS
CGATCTTTGTTAGGAATTCT+GGG 0.372235 8.3:-68429069 None:intergenic
TCAAGATGCCGATCTTTGTT+AGG 0.378876 8.3:-68429078 None:intergenic
GGGAACCACAAAGGTCTATC+AGG 0.385925 8.3:-68428292 None:intergenic
AGCTTGTTGTTCGGGAAGAT+AGG 0.387684 8.3:-68429244 None:intergenic
ATGGAGGAGGGGTGCTTCCT+GGG 0.394126 8.3:-68428312 None:intergenic
ACATTCCATTTCAGACTCTC+TGG 0.395922 8.3:-68428989 None:intergenic
GTTCCTGTGAGCTTGTTGTT+CGG 0.399754 8.3:-68429253 None:intergenic
GGAAATTAAGAATGGGAGAT+TGG 0.401117 8.3:+68429363 MS.gene050986:CDS
ACCCCTCCTCCATGGCTAGA+TGG 0.401270 8.3:+68428322 MS.gene050986:CDS
ATTGGCTATGTTGGCTGTGA+TGG 0.416001 8.3:+68429381 MS.gene050986:CDS
TCGGTTGGGCCGAGGGTAGA+AGG 0.424965 8.3:+68429182 MS.gene050986:CDS
CTGAGCCTGATAGACCTTTG+TGG 0.428063 8.3:+68428287 MS.gene050986:CDS
TGTTGGCTGTGATGGGAGCT+TGG 0.430184 8.3:+68429389 MS.gene050986:CDS
CACTGCAGATGGGCAATGTT+GGG 0.431773 8.3:+68429028 MS.gene050986:CDS
GCATCTTGAACACACCTTCA+TGG 0.443608 8.3:+68429092 MS.gene050986:CDS
TAGGGTACCCTGGTGGACTT+TGG 0.445153 8.3:+68429281 MS.gene050986:CDS
TTTGGTTTGATCCACTTGGT+TGG 0.450965 8.3:+68429299 MS.gene050986:CDS
GTGGTAGATCTCACTCTAAC+TGG 0.456746 8.3:-68428247 None:intergenic
AGAACAAAGGAAATTAAGAA+TGG 0.462272 8.3:+68429355 MS.gene050986:CDS
CTGATCCAGAGAGTCTGAAA+TGG 0.467545 8.3:+68428984 MS.gene050986:CDS
TGGTTCTCCTCAGAAGCTTA+AGG 0.470286 8.3:+68429327 MS.gene050986:CDS
TGGTTTGATCCACTTGGTTG+GGG 0.471868 8.3:+68429301 MS.gene050986:CDS
TGGGCAATGTTGGGAGCAGC+AGG 0.473188 8.3:+68429037 MS.gene050986:CDS
CAGAGCTTGTGCACTGCAGA+TGG 0.481288 8.3:+68429017 MS.gene050986:CDS
GATAGACCTTTGTGGTTCCC+AGG 0.481293 8.3:+68428295 MS.gene050986:CDS
AAGCTCACAGGAACTGATGT+AGG 0.494000 8.3:+68429262 MS.gene050986:CDS
TGAGCAAAGAGGTTATCAAT+AGG 0.495483 8.3:-68429439 None:intergenic
GAATGGGAGATTGGCTATGT+TGG 0.500964 8.3:+68429372 MS.gene050986:CDS
GGATCAAATCCAAAATCTCC+TGG 0.502658 8.3:-68428352 None:intergenic
GGACTTTGGTTTGATCCACT+TGG 0.512408 8.3:+68429295 MS.gene050986:CDS
GAACAAAGGAAATTAAGAAT+GGG 0.513870 8.3:+68429356 MS.gene050986:CDS
ACACCTTCATGGTACACTGC+TGG 0.517592 8.3:+68429103 MS.gene050986:CDS
GGGTCAGTGTTGACACAACC+TGG 0.522086 8.3:-68429223 None:intergenic
GTCAGCCCACCTTCTACCCT+CGG 0.523129 8.3:-68429191 None:intergenic
TGGGCTGACATCCTCAATCC+AGG 0.525106 8.3:+68429205 MS.gene050986:CDS
GGATCAAACCAAAGTCCACC+AGG 0.526848 8.3:-68429289 None:intergenic
TTGGCTATGTTGGCTGTGAT+GGG 0.528445 8.3:+68429382 MS.gene050986:CDS
CTCAACTCCTTAAGCTTCTG+AGG 0.529219 8.3:-68429334 None:intergenic
TGGCTAGATGGCAGTCTCCC+AGG 0.536159 8.3:+68428334 MS.gene050986:CDS
CAGCACATTTACACTGGCAC+TGG 0.541333 8.3:+68429415 MS.gene050986:CDS
GCTTGTTGTTCGGGAAGATA+GGG 0.542213 8.3:-68429243 None:intergenic
GCCATCTAGCCATGGAGGAG+GGG 0.546298 8.3:-68428323 None:intergenic
TTGGGCCGAGGGTAGAAGGT+GGG 0.548941 8.3:+68429186 MS.gene050986:CDS
TGCCATCTAGCCATGGAGGA+GGG 0.550191 8.3:-68428324 None:intergenic
CAGTGCCAGTGTAAATGTGC+TGG 0.552448 8.3:-68429414 None:intergenic
CCAGAATTCCTAACAAAGAT+CGG 0.554190 8.3:+68429070 MS.gene050986:CDS
GCACTGCAGATGGGCAATGT+TGG 0.556685 8.3:+68429027 MS.gene050986:CDS
CTGCCATCTAGCCATGGAGG+AGG 0.559386 8.3:-68428325 None:intergenic
CAGGAAGCACCCCTCCTCCA+TGG 0.569573 8.3:+68428314 MS.gene050986:CDS
TTCCCGAACAACAAGCTCAC+AGG 0.571770 8.3:+68429250 MS.gene050986:CDS
GTTGGGCCGAGGGTAGAAGG+TGG 0.588510 8.3:+68429185 MS.gene050986:CDS
AGAGCTTGTGCACTGCAGAT+GGG 0.595843 8.3:+68429018 MS.gene050986:CDS
TGGTTCCAGCACATTTACAC+TGG 0.596820 8.3:+68429409 MS.gene050986:CDS
GGGAGACTGCCATCTAGCCA+TGG 0.602036 8.3:-68428331 None:intergenic
AGCTGCTGCACACACTGTTG+TGG 0.606490 8.3:-68428266 None:intergenic
GGAACTGATGTAGGGTACCC+TGG 0.613660 8.3:+68429271 MS.gene050986:CDS
GCTTAAGGAGTTGAGAACAA+AGG 0.614983 8.3:+68429342 MS.gene050986:CDS
GTGCTTCCTGGGAACCACAA+AGG 0.617314 8.3:-68428301 None:intergenic
GATCAAATCCAAAATCTCCT+GGG 0.619038 8.3:-68428351 None:intergenic
AGCTCACAGGAACTGATGTA+GGG 0.630925 8.3:+68429263 MS.gene050986:CDS
TCTCCAGCAGTGTACCATGA+AGG 0.631666 8.3:-68429106 None:intergenic
TGTTGACACAACCTGGATTG+AGG 0.633547 8.3:-68429216 None:intergenic
GATCAGCAAGGTGAGCAAAG+AGG 0.646872 8.3:-68429450 None:intergenic
GCGAAAATAGTAGCATGACC+AGG 0.658859 8.3:-68429472 None:intergenic
GAACCACTTCCCCAACCAAG+TGG 0.665438 8.3:-68429310 None:intergenic
TTAAGCTTACAAAGTCCAAG+AGG 0.666846 8.3:-68428373 None:intergenic
TAGCATGACCAGGATCAGCA+AGG 0.674432 8.3:-68429462 None:intergenic
AGACTGCCATCTAGCCATGG+AGG 0.705683 8.3:-68428328 None:intergenic
CTCAACTATGAAGAGTGTGG+TGG 0.729773 8.3:-68429149 None:intergenic
GAGCTCAACTATGAAGAGTG+TGG 0.734291 8.3:-68429152 None:intergenic
GATCAAACCAAAGTCCACCA+GGG 0.744097 8.3:-68429288 None:intergenic
ACTGATGTAGGGTACCCTGG+TGG 0.744440 8.3:+68429274 MS.gene050986:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGAAAATAATCTTATAAAA+AGG - chr8.3:68428659-68428678 None:intergenic 10.0%
!! TAATAATAGTAATTTAGTAC+AGG - chr8.3:68429729-68429748 None:intergenic 15.0%
!! CTTGATCAAATATTTGAATT+TGG - chr8.3:68428577-68428596 None:intergenic 20.0%
!! TAGAAGAAGAATAAACTATA+GGG - chr8.3:68430055-68430074 None:intergenic 20.0%
!! TCAAGAAAAATTAAGAAAGT+TGG - chr8.3:68428855-68428874 None:intergenic 20.0%
!! TTAGAAGAAGAATAAACTAT+AGG - chr8.3:68430056-68430075 None:intergenic 20.0%
!!! CAATTTTTTTGTTACTGAAT+CGG + chr8.3:68428404-68428423 MS.gene050986:intron 20.0%
!!! TCAAGAGGATTTTATATTTA+GGG - chr8.3:68428622-68428641 None:intergenic 20.0%
! AACAATATGCAATCTAAACT+AGG - chr8.3:68429518-68429537 None:intergenic 25.0%
! AATAGTAATTTAGTACAGGT+CGG - chr8.3:68429725-68429744 None:intergenic 25.0%
! AGAACAAAGGAAATTAAGAA+TGG + chr8.3:68429355-68429374 MS.gene050986:CDS 25.0%
! ATTAAAATGCATCAAACACT+TGG - chr8.3:68429917-68429936 None:intergenic 25.0%
! CAACACTTTGATGAATATTA+TGG - chr8.3:68428946-68428965 None:intergenic 25.0%
! CATAATATTCATCAAAGTGT+TGG + chr8.3:68428944-68428963 MS.gene050986:intron 25.0%
! GAACAAAGGAAATTAAGAAT+GGG + chr8.3:68429356-68429375 MS.gene050986:CDS 25.0%
! GATGTAGCATATACTAATTA+TGG - chr8.3:68428723-68428742 None:intergenic 25.0%
! GCATGTAATAAATACTAAGA+TGG + chr8.3:68428753-68428772 MS.gene050986:intron 25.0%
!! CTCAAGAGGATTTTATATTT+AGG - chr8.3:68428623-68428642 None:intergenic 25.0%
!! GGATTTTCTACATTAGTAAA+AGG - chr8.3:68428556-68428575 None:intergenic 25.0%
!! TACTCTTTAGAAGAGAAAAT+TGG - chr8.3:68428788-68428807 None:intergenic 25.0%
!! TTTTCTTGATTTAGTCAACA+TGG + chr8.3:68428866-68428885 MS.gene050986:intron 25.0%
!!! ATTTTTTCAAGGTGTCTTAA+CGG + chr8.3:68429846-68429865 MS.gene050986:intron 25.0%
AATATGCAATCTAAACTAGG+AGG - chr8.3:68429515-68429534 None:intergenic 30.0%
ACCAAACCATTATAGTAGTT+TGG - chr8.3:68429613-68429632 None:intergenic 30.0%
ACCAAACTACTATAATGGTT+TGG + chr8.3:68429609-68429628 MS.gene050986:intron 30.0%
AGATAATGAAAGTCTGATGA+AGG - chr8.3:68429992-68430011 None:intergenic 30.0%
ATTAGACGAGTTGTATTAGA+CGG + chr8.3:68428501-68428520 MS.gene050986:intron 30.0%
GTTTAAAAACAGAACCAGTT+CGG - chr8.3:68429810-68429829 None:intergenic 30.0%
TGAATCGGATTGATTACAAT+CGG + chr8.3:68428419-68428438 MS.gene050986:intron 30.0%
TGCTAACCAAACTACTATAA+TGG + chr8.3:68429604-68429623 MS.gene050986:intron 30.0%
TTATCTATTACTGCTACAAC+AGG + chr8.3:68430139-68430158 MS.gene050986:intron 30.0%
TTTAGATTGCATATTGTTCG+TGG + chr8.3:68429520-68429539 MS.gene050986:intron 30.0%
! ATAGTTGAGCTCATTTTCAT+CGG + chr8.3:68429163-68429182 MS.gene050986:CDS 30.0%
! GAGGATTTTATATTTAGGGA+CGG - chr8.3:68428618-68428637 None:intergenic 30.0%
! TATTGTTCGTGGTTTGATTT+AGG + chr8.3:68429531-68429550 MS.gene050986:intron 30.0%
! TGGTTTGAAAAAGTACAGTT+TGG - chr8.3:68429685-68429704 None:intergenic 30.0%
! TTTTAGTGTGGAATCAAACT+CGG - chr8.3:68429965-68429984 None:intergenic 30.0%
! TTTTCTTGGAAGGAAATTGA+AGG + chr8.3:68428204-68428223 MS.gene050986:CDS 30.0%
!!! GTCACAGTTTGATTTTTTCA+AGG + chr8.3:68429835-68429854 MS.gene050986:intron 30.0%
!!! TACAGTTTGGTTTTCTATTG+AGG - chr8.3:68429672-68429691 None:intergenic 30.0%
ACAACTCGTCTAATCAAGAT+CGG - chr8.3:68428495-68428514 None:intergenic 35.0%
CAAAAAGAACCGAATTGTGA+CGG + chr8.3:68429757-68429776 MS.gene050986:intron 35.0%
CCAGAATTCCTAACAAAGAT+CGG + chr8.3:68429070-68429089 MS.gene050986:CDS 35.0%
CGATCTTTGTTAGGAATTCT+GGG - chr8.3:68429072-68429091 None:intergenic 35.0%
GAGCAATGAAAAAACTCAAG+AGG - chr8.3:68428637-68428656 None:intergenic 35.0%
GATCAAATCCAAAATCTCCT+GGG - chr8.3:68428354-68428373 None:intergenic 35.0%
GGAAATTAAGAATGGGAGAT+TGG + chr8.3:68429363-68429382 MS.gene050986:CDS 35.0%
GGTCATGTATTTAGAGACAA+CGG + chr8.3:68428887-68428906 MS.gene050986:intron 35.0%
TGAGCAAAGAGGTTATCAAT+AGG - chr8.3:68429442-68429461 None:intergenic 35.0%
TTAAGCTTACAAAGTCCAAG+AGG - chr8.3:68428376-68428395 None:intergenic 35.0%
TTTAGTGTGGAATCAAACTC+GGG - chr8.3:68429964-68429983 None:intergenic 35.0%
! GATTTTGGATTTGATCCTCT+TGG + chr8.3:68428358-68428377 MS.gene050986:CDS 35.0%
! GTTCAGTTTTACCAAACTGT+TGG - chr8.3:68429579-68429598 None:intergenic 35.0%
! GTTTTACCAAACTGTTGGAA+TGG - chr8.3:68429574-68429593 None:intergenic 35.0%
! GTTTTCTATTGAGGTAGTTC+AGG - chr8.3:68429663-68429682 None:intergenic 35.0%
! TTTTCTTAAACAGTCCTGAC+TGG + chr8.3:68429889-68429908 MS.gene050986:intron 35.0%
!! TCTAAACTAGGAGGTATTGA+TGG - chr8.3:68429506-68429525 None:intergenic 35.0%
!!! GTGGTCTTATTTTCCTTGTT+GGG + chr8.3:68428909-68428928 MS.gene050986:intron 35.0%
ACATTCCATTTCAGACTCTC+TGG - chr8.3:68428992-68429011 None:intergenic 40.0%
ACTGAACCATTCCAACAGTT+TGG + chr8.3:68429565-68429584 MS.gene050986:intron 40.0%
ACTGTTGGAATGGTTCAGTT+CGG - chr8.3:68429564-68429583 None:intergenic 40.0%
ATGAACTGTCCGTCACAATT+CGG - chr8.3:68429769-68429788 None:intergenic 40.0%
CATGTATTTAGAGACAACGG+TGG + chr8.3:68428890-68428909 MS.gene050986:intron 40.0%
CCGATCTTTGTTAGGAATTC+TGG - chr8.3:68429073-68429092 None:intergenic 40.0%
CGGTTCACAAAGAATCAGTT+TGG - chr8.3:68429705-68429724 None:intergenic 40.0%
GCTTAAGGAGTTGAGAACAA+AGG + chr8.3:68429342-68429361 MS.gene050986:CDS 40.0%
GGATCAAATCCAAAATCTCC+TGG - chr8.3:68428355-68428374 None:intergenic 40.0%
TCAAGATGCCGATCTTTGTT+AGG - chr8.3:68429081-68429100 None:intergenic 40.0%
TCGGTTCATAACCACATAAC+TGG - chr8.3:68429639-68429658 None:intergenic 40.0%
TGAATCAAGCTAAACCGAAC+TGG + chr8.3:68429793-68429812 MS.gene050986:intron 40.0%
! CCTCAAAAGCTTTTCTTGGA+AGG + chr8.3:68428194-68428213 MS.gene050986:CDS 40.0%
! CCTTCCAAGAAAAGCTTTTG+AGG - chr8.3:68428197-68428216 None:intergenic 40.0%
! CGTCACAATTCGGTTCTTTT+TGG - chr8.3:68429759-68429778 None:intergenic 40.0%
! CTATTGAGGTAGTTCAGGTT+CGG - chr8.3:68429658-68429677 None:intergenic 40.0%
! GGAACCTCAAAAGCTTTTCT+TGG + chr8.3:68428190-68428209 MS.gene050986:CDS 40.0%
! TTCAAGGTGTCTTAACGGTT+TGG + chr8.3:68429851-68429870 MS.gene050986:intron 40.0%
! TTGAGCTCATTTTCATCGGT+TGG + chr8.3:68429167-68429186 MS.gene050986:CDS 40.0%
! TTGGTTTGATCCACTTGGTT+GGG + chr8.3:68429300-68429319 MS.gene050986:CDS 40.0%
!! TGAGCTCATTTTCATCGGTT+GGG + chr8.3:68429168-68429187 MS.gene050986:CDS 40.0%
!! TTTGGTTTGATCCACTTGGT+TGG + chr8.3:68429299-68429318 MS.gene050986:CDS 40.0%
!!! GATGAAGGACTGTTTTAGTG+TGG - chr8.3:68429977-68429996 None:intergenic 40.0%
!!! GGTGGTCTTATTTTCCTTGT+TGG + chr8.3:68428908-68428927 MS.gene050986:intron 40.0%
AAGCTCACAGGAACTGATGT+AGG + chr8.3:68429262-68429281 MS.gene050986:CDS 45.0%
AGCTCACAGGAACTGATGTA+GGG + chr8.3:68429263-68429282 MS.gene050986:CDS 45.0%
CTCAACTCCTTAAGCTTCTG+AGG - chr8.3:68429337-68429356 None:intergenic 45.0%
CTGATCCAGAGAGTCTGAAA+TGG + chr8.3:68428984-68429003 MS.gene050986:CDS 45.0%
GAGCTCAACTATGAAGAGTG+TGG - chr8.3:68429155-68429174 None:intergenic 45.0%
GATCAAACCAAAGTCCACCA+GGG - chr8.3:68429291-68429310 None:intergenic 45.0%
GCATCTTGAACACACCTTCA+TGG + chr8.3:68429092-68429111 MS.gene050986:CDS 45.0%
GCGAAAATAGTAGCATGACC+AGG - chr8.3:68429475-68429494 None:intergenic 45.0%
GGTCAGTTGTATTCCCAACA+AGG - chr8.3:68428925-68428944 None:intergenic 45.0%
GTGGTAGATCTCACTCTAAC+TGG - chr8.3:68428250-68428269 None:intergenic 45.0%
TCAAACACTTGGTTCCAGTC+AGG - chr8.3:68429906-68429925 None:intergenic 45.0%
TGGTTCCAGCACATTTACAC+TGG + chr8.3:68429409-68429428 MS.gene050986:CDS 45.0%
TGGTTCTCCTCAGAAGCTTA+AGG + chr8.3:68429327-68429346 MS.gene050986:CDS 45.0%
TGGTTTGATCCACTTGGTTG+GGG + chr8.3:68429301-68429320 MS.gene050986:CDS 45.0%
TGTTGACACAACCTGGATTG+AGG - chr8.3:68429219-68429238 None:intergenic 45.0%
! ATTGGCTATGTTGGCTGTGA+TGG + chr8.3:68429381-68429400 MS.gene050986:CDS 45.0%
! CTCAACTATGAAGAGTGTGG+TGG - chr8.3:68429152-68429171 None:intergenic 45.0%
! GAATGGGAGATTGGCTATGT+TGG + chr8.3:68429372-68429391 MS.gene050986:CDS 45.0%
! GGTTTGGTTCACCAGTTATG+TGG + chr8.3:68429625-68429644 MS.gene050986:intron 45.0%
! TTGGCTATGTTGGCTGTGAT+GGG + chr8.3:68429382-68429401 MS.gene050986:CDS 45.0%
!! AGCTTGTTGTTCGGGAAGAT+AGG - chr8.3:68429247-68429266 None:intergenic 45.0%
!! GCTTGTTGTTCGGGAAGATA+GGG - chr8.3:68429246-68429265 None:intergenic 45.0%
!! GGACTTTGGTTTGATCCACT+TGG + chr8.3:68429295-68429314 MS.gene050986:CDS 45.0%
!! GTTCCTGTGAGCTTGTTGTT+CGG - chr8.3:68429256-68429275 None:intergenic 45.0%
!! TTCCTGTGAGCTTGTTGTTC+GGG - chr8.3:68429255-68429274 None:intergenic 45.0%
ACACCTTCATGGTACACTGC+TGG + chr8.3:68429103-68429122 MS.gene050986:CDS 50.0%
AGAGCTTGTGCACTGCAGAT+GGG + chr8.3:68429018-68429037 MS.gene050986:CDS 50.0%
CACTGCAGATGGGCAATGTT+GGG + chr8.3:68429028-68429047 MS.gene050986:CDS 50.0%
CAGCACATTTACACTGGCAC+TGG + chr8.3:68429415-68429434 MS.gene050986:CDS 50.0%
CAGTGCCAGTGTAAATGTGC+TGG - chr8.3:68429417-68429436 None:intergenic 50.0%
CTGAGCCTGATAGACCTTTG+TGG + chr8.3:68428287-68428306 MS.gene050986:CDS 50.0%
GATAGACCTTTGTGGTTCCC+AGG + chr8.3:68428295-68428314 MS.gene050986:CDS 50.0%
GATCAGCAAGGTGAGCAAAG+AGG - chr8.3:68429453-68429472 None:intergenic 50.0%
GGATCAAACCAAAGTCCACC+AGG - chr8.3:68429292-68429311 None:intergenic 50.0%
GGGAACCACAAAGGTCTATC+AGG - chr8.3:68428295-68428314 None:intergenic 50.0%
TAGCATGACCAGGATCAGCA+AGG - chr8.3:68429465-68429484 None:intergenic 50.0%
TCTCCAGCAGTGTACCATGA+AGG - chr8.3:68429109-68429128 None:intergenic 50.0%
TTCCCGAACAACAAGCTCAC+AGG + chr8.3:68429250-68429269 MS.gene050986:CDS 50.0%
TTGCGCAACTGCGTCAACTT+TGG + chr8.3:68428530-68428549 MS.gene050986:intron 50.0%
TTTGCTCACCTTGCTGATCC+TGG + chr8.3:68429454-68429473 MS.gene050986:CDS 50.0%
!! ATTTTCATCGGTTGGGCCGA+GGG + chr8.3:68429175-68429194 MS.gene050986:CDS 50.0%
AGACTGCCATCTAGCCATGG+AGG - chr8.3:68428331-68428350 None:intergenic 55.0%
AGCTGCTGCACACACTGTTG+TGG - chr8.3:68428269-68428288 None:intergenic 55.0%
CAGAGCTTGTGCACTGCAGA+TGG + chr8.3:68429017-68429036 MS.gene050986:CDS 55.0%
GAACCACTTCCCCAACCAAG+TGG - chr8.3:68429313-68429332 None:intergenic 55.0%
GATCCACTTGGTTGGGGAAG+TGG + chr8.3:68429307-68429326 MS.gene050986:CDS 55.0%
GCACTGCAGATGGGCAATGT+TGG + chr8.3:68429027-68429046 MS.gene050986:CDS 55.0%
GTGCTTCCTGGGAACCACAA+AGG - chr8.3:68428304-68428323 None:intergenic 55.0%
TGCCATCTAGCCATGGAGGA+GGG - chr8.3:68428327-68428346 None:intergenic 55.0%
TGGGCTGACATCCTCAATCC+AGG + chr8.3:68429205-68429224 MS.gene050986:CDS 55.0%
! ACTGATGTAGGGTACCCTGG+TGG + chr8.3:68429274-68429293 MS.gene050986:CDS 55.0%
! GGAACTGATGTAGGGTACCC+TGG + chr8.3:68429271-68429290 MS.gene050986:CDS 55.0%
! GGCAGTCTCCCAGGAGATTT+TGG + chr8.3:68428343-68428362 MS.gene050986:CDS 55.0%
! TGTTGGCTGTGATGGGAGCT+TGG + chr8.3:68429389-68429408 MS.gene050986:CDS 55.0%
!! CATTTTCATCGGTTGGGCCG+AGG + chr8.3:68429174-68429193 MS.gene050986:CDS 55.0%
!! GGGTCAGTGTTGACACAACC+TGG - chr8.3:68429226-68429245 None:intergenic 55.0%
!! TAGGGTACCCTGGTGGACTT+TGG + chr8.3:68429281-68429300 MS.gene050986:CDS 55.0%
ACCCCTCCTCCATGGCTAGA+TGG + chr8.3:68428322-68428341 MS.gene050986:CDS 60.0%
CTGCCATCTAGCCATGGAGG+AGG - chr8.3:68428328-68428347 None:intergenic 60.0%
GCCATCTAGCCATGGAGGAG+GGG - chr8.3:68428326-68428345 None:intergenic 60.0%
GGGAGACTGCCATCTAGCCA+TGG - chr8.3:68428334-68428353 None:intergenic 60.0%
GTCAGCCCACCTTCTACCCT+CGG - chr8.3:68429194-68429213 None:intergenic 60.0%
TGGCTAGATGGCAGTCTCCC+AGG + chr8.3:68428334-68428353 MS.gene050986:CDS 60.0%
TGGGCAATGTTGGGAGCAGC+AGG + chr8.3:68429037-68429056 MS.gene050986:CDS 60.0%
TTGGGCCGAGGGTAGAAGGT+GGG + chr8.3:68429186-68429205 MS.gene050986:CDS 60.0%
!! ATGGAGGAGGGGTGCTTCCT+GGG - chr8.3:68428315-68428334 None:intergenic 60.0%
GTTGGGCCGAGGGTAGAAGG+TGG + chr8.3:68429185-68429204 MS.gene050986:CDS 65.0%
TCGGTTGGGCCGAGGGTAGA+AGG + chr8.3:68429182-68429201 MS.gene050986:CDS 65.0%
!! CAGGAAGCACCCCTCCTCCA+TGG + chr8.3:68428314-68428333 MS.gene050986:CDS 65.0%
!! CATGGAGGAGGGGTGCTTCC+TGG - chr8.3:68428316-68428335 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 68428187 68430178 68428187 ID=MS.gene050986
chr8.3 mRNA 68428187 68430178 68428187 ID=MS.gene050986.t1;Parent=MS.gene050986
chr8.3 exon 68428187 68428385 68428187 ID=MS.gene050986.t1.exon1;Parent=MS.gene050986.t1
chr8.3 CDS 68428187 68428385 68428187 ID=cds.MS.gene050986.t1;Parent=MS.gene050986.t1
chr8.3 exon 68428981 68429495 68428981 ID=MS.gene050986.t1.exon2;Parent=MS.gene050986.t1
chr8.3 CDS 68428981 68429495 68428981 ID=cds.MS.gene050986.t1;Parent=MS.gene050986.t1
chr8.3 exon 68430161 68430178 68430161 ID=MS.gene050986.t1.exon3;Parent=MS.gene050986.t1
chr8.3 CDS 68430161 68430178 68430161 ID=cds.MS.gene050986.t1;Parent=MS.gene050986.t1
Gene Sequence

>MS.gene050986

ATGGGAACCTCAAAAGCTTTTCTTGGAAGGAAATTGAAGGTGAACAGCAACACTGCAGCACCAGTTAGAGTGAGATCTACCACAACAGTGTGTGCAGCAGCTGAGCCTGATAGACCTTTGTGGTTCCCAGGAAGCACCCCTCCTCCATGGCTAGATGGCAGTCTCCCAGGAGATTTTGGATTTGATCCTCTTGGACTTTGTAAGCTTAATCAGAACTCAATTTTTTTGTTACTGAATCGGATTGATTACAATCGGATTGAAAATAATCTACTATGCAGTTGTTGCACTTGCATAGTCTGACTTGTCCGATCTTGATTAGACGAGTTGTATTAGACGGTTCATGTTGCGCAACTGCGTCAACTTTGGCCTTTTACTAATGTAGAAAATCCAAATTCAAATATTTGATCAAGTAGTACACATTACTAACTCCGTCCCTAAATATAAAATCCTCTTGAGTTTTTTCATTGCTCCTTTTTATAAGATTATTTTCTAAATTTTAACTGTATCAGTTATTTTTTACATACATACTCGTACCATAATTAGTATATGCTACATCTTTTTATGCAGCATGTAATAAATACTAAGATGGAAACATAAACCAATTTTCTCTTCTAAAGAGTAATCTTGTAAATCAATAACAACTGTTAATAAGTTTAATATTATTACCAACTTTCTTAATTTTTCTTGATTTAGTCAACATGGTCATGTATTTAGAGACAACGGTGGTCTTATTTTCCTTGTTGGGAATACAACTGACCATAATATTCATCAAAGTGTTGGTTGTGATTCAACAGCATCTGATCCAGAGAGTCTGAAATGGAATGTTCAAGCAGAGCTTGTGCACTGCAGATGGGCAATGTTGGGAGCAGCAGGAATTTTCATCCCAGAATTCCTAACAAAGATCGGCATCTTGAACACACCTTCATGGTACACTGCTGGAGAGCAAGAGTATTTCACAGACACCACCACACTCTTCATAGTTGAGCTCATTTTCATCGGTTGGGCCGAGGGTAGAAGGTGGGCTGACATCCTCAATCCAGGTTGTGTCAACACTGACCCTATCTTCCCGAACAACAAGCTCACAGGAACTGATGTAGGGTACCCTGGTGGACTTTGGTTTGATCCACTTGGTTGGGGAAGTGGTTCTCCTCAGAAGCTTAAGGAGTTGAGAACAAAGGAAATTAAGAATGGGAGATTGGCTATGTTGGCTGTGATGGGAGCTTGGTTCCAGCACATTTACACTGGCACTGGTCCTATTGATAACCTCTTTGCTCACCTTGCTGATCCTGGTCATGCTACTATTTTCGCTGTAAGTTCCATCAATACCTCCTAGTTTAGATTGCATATTGTTCGTGGTTTGATTTAGGAAGAAAACCGAACTGAACCATTCCAACAGTTTGGTAAAACTGAACTAAACTGCTAACCAAACTACTATAATGGTTTGGTTCACCAGTTATGTGGTTATGAACCGAACCTGAACTACCTCAATAGAAAACCAAACTGTACTTTTTCAAACCAAACTGATTCTTTGTGAACCGACCTGTACTAAATTACTATTATTAACTTTAACCAAAAAGAACCGAATTGTGACGGACAGTTCATGAACTGAATCAAGCTAAACCGAACTGGTTCTGTTTTTAAACTGTAAGTCACAGTTTGATTTTTTCAAGGTGTCTTAACGGTTTGGTTCAGTTTTTGTTTGTTTTCTTAAACAGTCCTGACTGGAACCAAGTGTTTGATGCATTTTAATTAAGATAAAATCGTTTGAGTAATACCCGAGTTTGATTCCACACTAAAACAGTCCTTCATCAGACTTTCATTATCTTTTGACTGAACTCTAGACTTTACTACAAAGACAAAAGAAACCCTATAGTTTATTCTTCTTCTAACTTAGTTTTATAACTTTGAATATATAAAATATTATTATTATTTTAGAATTGTTTGAGCTGATTTTATCTATTACTGCTACAACAGGCTTTCACTCCCAAGTGA

Protein sequence

>MS.gene050986.t1

MGTSKAFLGRKLKVNSNTAAPVRVRSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELIFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK