AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049865


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049865.t1 MTR_4g060900 97.342 489 13 0 1 489 1 489 0.0 997
MS.gene049865.t1 MTR_7g100780 57.240 442 179 4 16 455 56 489 0.0 555
MS.gene049865.t1 MTR_4g053620 32.456 342 180 10 104 434 30 331 4.84e-43 156
MS.gene049865.t1 MTR_3g104770 32.087 321 174 11 123 434 129 414 2.05e-40 150
MS.gene049865.t1 MTR_1g060150 31.065 338 197 8 119 450 68 375 4.17e-40 149
MS.gene049865.t1 MTR_1g060130 29.223 373 221 10 86 450 38 375 6.35e-39 145
MS.gene049865.t1 MTR_2g086290 30.275 327 196 9 119 443 36 332 6.65e-39 144
MS.gene049865.t1 MTR_2g086300 31.437 334 189 11 122 449 47 346 1.75e-38 144
MS.gene049865.t1 MTR_1g050458 28.972 321 187 8 119 430 36 324 5.93e-35 134
MS.gene049865.t1 MTR_1g050458 44.444 135 72 2 119 250 36 170 1.14e-28 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049865.t1 AT3G09690 59.867 451 172 3 9 457 57 500 0.0 583
MS.gene049865.t1 AT3G09690 59.867 451 172 3 9 457 57 500 0.0 583
MS.gene049865.t1 AT5G02970 56.399 461 192 3 13 471 58 511 0.0 559
MS.gene049865.t1 AT5G22460 28.531 354 210 8 88 430 1 322 4.58e-40 147
MS.gene049865.t1 AT5G22460 28.531 354 210 8 88 430 1 322 4.58e-40 147
MS.gene049865.t1 AT5G22460 28.531 354 210 8 88 430 1 322 4.58e-40 147
MS.gene049865.t1 AT3G44510 32.219 329 186 10 124 444 8 307 4.50e-39 144
MS.gene049865.t1 AT3G54240 27.893 337 212 6 119 452 40 348 2.24e-38 143
MS.gene049865.t1 AT1G74280 29.179 329 177 6 119 430 56 345 1.09e-37 142
MS.gene049865.t1 AT2G36290 30.636 346 206 9 93 430 8 327 4.61e-37 140
MS.gene049865.t1 AT2G36290 30.460 348 204 10 93 430 22 341 7.59e-37 139
MS.gene049865.t1 AT1G08310 30.523 344 176 10 119 444 5 303 1.65e-36 137
MS.gene049865.t1 AT1G08310 30.347 346 177 10 119 444 5 306 4.46e-36 136
MS.gene049865.t1 AT3G44510 43.094 181 85 6 124 296 8 178 2.50e-35 132
MS.gene049865.t1 AT1G74290 29.595 321 187 7 119 430 56 346 2.85e-33 130
MS.gene049865.t1 AT1G74300 29.012 324 184 6 119 430 39 328 3.58e-33 129
MS.gene049865.t1 AT3G03240 28.481 316 185 9 122 430 35 316 8.53e-32 125
MS.gene049865.t1 AT3G48410 27.506 389 210 12 82 448 33 371 6.37e-31 124
MS.gene049865.t1 AT3G48410 27.957 372 198 11 82 431 75 398 1.13e-30 124
MS.gene049865.t1 AT1G08310 47.368 133 68 2 119 250 5 136 4.52e-30 118
MS.gene049865.t1 AT3G03230 27.097 310 196 6 122 430 35 315 3.41e-29 117
MS.gene049865.t1 AT1G74300 27.376 263 147 5 178 430 1 229 2.44e-22 96.3

Find 115 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCATTGTTAAGAAATT+TGG 0.136021 4.4:+44119438 MS.gene049865:CDS
ACAAAAGGAATGTGCTTAAT+TGG 0.161569 4.4:+44122343 MS.gene049865:CDS
TATCAGCGAAGTTTCTTATC+AGG 0.205500 4.4:+44121831 MS.gene049865:CDS
CTCTTGGTGTTGACAAGTTT+TGG 0.207857 4.4:+44121086 MS.gene049865:CDS
CAAGTTCAACGTTGGCTTCT+AGG 0.207888 4.4:-44123419 None:intergenic
ATCCAATCTATGAGGATTTC+TGG 0.211014 4.4:+44122199 MS.gene049865:CDS
TGTGGAGGAAGCTGCTTTGC+AGG 0.230425 4.4:+44122269 MS.gene049865:CDS
TTCCTTTCCTCTCGGCTTGC+AGG 0.230918 4.4:+44120813 MS.gene049865:CDS
TGCTTTGCAGGTCTCGAATT+GGG 0.231694 4.4:+44122281 MS.gene049865:CDS
CACTGAAACTCAGGAGTATA+CGG 0.248631 4.4:+44122380 MS.gene049865:CDS
CGAAGCTTTCCTAGACTTCT+TGG 0.254206 4.4:+44121801 MS.gene049865:CDS
ACGTTGGCTTCTAGGGTAAT+TGG 0.261598 4.4:-44123411 None:intergenic
CTAACTGTAGAATTCTTAAA+AGG 0.264307 4.4:+44119375 MS.gene049865:CDS
GTTAAGAAATTTGGAAAGAT+TGG 0.278897 4.4:+44119447 MS.gene049865:CDS
ACTTATGATCTGCCTGGTTT+TGG 0.280877 4.4:+44120995 MS.gene049865:CDS
TGAGGCTGAGAGGGCCTTGC+GGG 0.293815 4.4:-44123368 None:intergenic
GATTCACTGATGGAAGAATT+TGG 0.296353 4.4:+44120959 MS.gene049865:CDS
TCCTCATCCCAAACGAAATC+TGG 0.315816 4.4:+44121027 MS.gene049865:CDS
TTAATACCTGCAAGTCTATC+AGG 0.327430 4.4:-44121163 None:intergenic
CAAGTGGAAGCAAACATTCT+TGG 0.329109 4.4:+44121122 MS.gene049865:CDS
TGACGATTCCAGATTTCGTT+TGG 0.334193 4.4:-44121035 None:intergenic
TCTGCAACTTGAGGTCTAAA+AGG 0.346212 4.4:-44122311 None:intergenic
CTGCTTTGCAGGTCTCGAAT+TGG 0.353135 4.4:+44122280 MS.gene049865:CDS
CGTTTGAAATTAGGAATTCC+TGG 0.355664 4.4:+44120929 MS.gene049865:intron
TACATACCTGATAGACTTGC+AGG 0.361619 4.4:+44121157 MS.gene049865:CDS
TGCTACCCGCATTATGCTTC+CGG 0.364526 4.4:+44120713 MS.gene049865:CDS
TGCCAGAAATCCTCATAGAT+TGG 0.373531 4.4:-44122201 None:intergenic
TGAAGTGGGTCTTTATCTTC+TGG 0.394412 4.4:-44119534 None:intergenic
TTTGTCATCAAAGGATCATA+TGG 0.395653 4.4:-44121714 None:intergenic
CAGGAGTATACGGGATTTCT+CGG 0.400274 4.4:+44122390 MS.gene049865:CDS
GACGATTCCAGATTTCGTTT+GGG 0.408411 4.4:-44121034 None:intergenic
CTCATACTTTCCTTTCCTCT+CGG 0.410239 4.4:+44120805 MS.gene049865:CDS
GTTTCTTTACTTGCTTTCTC+AGG 0.414312 4.4:+44119579 MS.gene049865:CDS
GACGAAGAACCTGGAACAAA+TGG 0.419319 4.4:+44121745 MS.gene049865:CDS
GGGATGTGGAAGAATCAATT+AGG 0.420004 4.4:+44122226 MS.gene049865:CDS
GAATGTGCTTAATTGGCTTA+AGG 0.424123 4.4:+44122350 MS.gene049865:CDS
ATACAAGGAGCAAGGTGTTT+CGG 0.426151 4.4:+44120752 MS.gene049865:CDS
CTCTCTTCGTTTGTCATCAA+AGG 0.426304 4.4:-44121723 None:intergenic
TTAAGAAATTTGGAAAGATT+GGG 0.427485 4.4:+44119448 MS.gene049865:CDS
AAAAGTATATATATGTGAAA+TGG 0.431214 4.4:-44123302 None:intergenic
AAGTGGAAGCAAACATTCTT+GGG 0.434750 4.4:+44121123 MS.gene049865:CDS
TGTGTAAGAGAGTTCATGAT+TGG 0.436128 4.4:+44119342 MS.gene049865:CDS
AGGTGGCTGTCTTTATCTCT+TGG 0.445446 4.4:+44121873 MS.gene049865:CDS
ACGAAGAGAGACGAAGAACC+TGG 0.455949 4.4:+44121736 MS.gene049865:CDS
AAGTTCAACGTTGGCTTCTA+GGG 0.458277 4.4:-44123418 None:intergenic
CTCACTTGCCATATGTGTAT+TGG 0.459865 4.4:-44122414 None:intergenic
TCCAGATTTCGTTTGGGATG+AGG 0.462321 4.4:-44121028 None:intergenic
TATGTGAAATGGCCTTCATA+TGG 0.467837 4.4:-44123291 None:intergenic
GGATCATATGGGTTCACCAT+GGG 0.473212 4.4:-44121702 None:intergenic
TTCTCGGTCCAATACACATA+TGG 0.474933 4.4:+44122406 MS.gene049865:CDS
GGAAGCATGGTCAGATTGAC+AGG 0.481984 4.4:+44121853 MS.gene049865:CDS
TTGATTACTTATGATCTGCC+TGG 0.485276 4.4:+44120989 MS.gene049865:CDS
GTGTAAGAGAGTTCATGATT+GGG 0.487800 4.4:+44119343 MS.gene049865:CDS
ATAAAGACCCACTTCATGCT+TGG 0.491569 4.4:+44119541 MS.gene049865:CDS
TTTGTGCATCGCGTACTACC+TGG 0.493610 4.4:+44123249 MS.gene049865:CDS
AGTTTGTGTACTGCAGCTCC+AGG 0.498358 4.4:-44123267 None:intergenic
TGCAGAAACGAAAATACAAA+AGG 0.502548 4.4:+44122328 MS.gene049865:CDS
TGGAAGATACATGGCATACA+AGG 0.504189 4.4:+44120737 MS.gene049865:CDS
GCACAAAATCAGTCATTGAC+GGG 0.504891 4.4:-44123233 None:intergenic
CTATGAGGATTTCTGGCAAA+GGG 0.505065 4.4:+44122206 MS.gene049865:CDS
GTCTTTATCTCTTGGAAAGA+GGG 0.506713 4.4:+44121881 MS.gene049865:CDS
GGATTTCTGGCAAAGGGATG+TGG 0.507209 4.4:+44122212 MS.gene049865:CDS
CGAGAGGAAAGGAAAGTATG+AGG 0.512168 4.4:-44120804 None:intergenic
AAAATACTTGCTTCTCAAGT+GGG 0.518790 4.4:-44120677 None:intergenic
TGTCTTTATCTCTTGGAAAG+AGG 0.519291 4.4:+44121880 MS.gene049865:CDS
GCTTTGCAGGTCTCGAATTG+GGG 0.522101 4.4:+44122282 MS.gene049865:CDS
AAAGCAGCTTCCTCCACAAA+GGG 0.525187 4.4:-44122264 None:intergenic
TTGTCATCAAAGGATCATAT+GGG 0.529008 4.4:-44121713 None:intergenic
TAGAAGAAACCAAGAAGTCT+AGG 0.529335 4.4:-44121810 None:intergenic
TGTAAGAGAGTTCATGATTG+GGG 0.530248 4.4:+44119344 MS.gene049865:CDS
ATGTGAAATGGCCTTCATAT+GGG 0.532028 4.4:-44123290 None:intergenic
ATCAGCGAAGTTTCTTATCA+GGG 0.532446 4.4:+44121832 MS.gene049865:CDS
TATGCCATGTATCTTCCATC+CGG 0.539640 4.4:-44120732 None:intergenic
ATAATGCGGGTAGCACTAGC+AGG 0.539782 4.4:-44120705 None:intergenic
AAGAAATGCTGAGGCTGAGA+GGG 0.556389 4.4:-44123377 None:intergenic
CTGAGGCTGAGAGGGCCTTG+CGG 0.559279 4.4:-44123369 None:intergenic
TTGCTGTTCAAGTTCAACGT+TGG 0.561905 4.4:-44123427 None:intergenic
TGGATCATTGGTTACTCAAG+TGG 0.565359 4.4:+44121106 MS.gene049865:CDS
TGGTGTTAAAGATTCACTGA+TGG 0.566190 4.4:+44120949 MS.gene049865:CDS
ACTGAAACTCAGGAGTATAC+GGG 0.566332 4.4:+44122381 MS.gene049865:CDS
ATCAGTGAATCTTTAACACC+AGG 0.570063 4.4:-44120947 None:intergenic
CAAAGCAGCTTCCTCCACAA+AGG 0.573514 4.4:-44122265 None:intergenic
GATGGAAGATCCAATCTATG+AGG 0.573832 4.4:+44122191 MS.gene049865:CDS
TGCACAAAATCAGTCATTGA+CGG 0.575384 4.4:-44123234 None:intergenic
ATGACAAACCAAGCATGAAG+TGG 0.579236 4.4:-44119549 None:intergenic
TCCATCCGGAAGCATAATGC+GGG 0.582006 4.4:-44120718 None:intergenic
AGGAAATGTGAAACCCTTTG+TGG 0.583951 4.4:+44122251 MS.gene049865:CDS
GTACACAAACTCCCATATGA+AGG 0.587384 4.4:+44123279 MS.gene049865:CDS
GGATCGCTCTCACCAAAACC+AGG 0.589789 4.4:-44121007 None:intergenic
TTGTTCAACAATTTCTCACA+AGG 0.592322 4.4:-44119486 None:intergenic
GAGGCTGAGAGGGCCTTGCG+GGG 0.592778 4.4:-44123367 None:intergenic
ACCCGCATTATGCTTCCGGA+TGG 0.593805 4.4:+44120717 MS.gene049865:CDS
TTCCATCCGGAAGCATAATG+CGG 0.604964 4.4:-44120719 None:intergenic
CACAAAATCAGTCATTGACG+GGG 0.606548 4.4:-44123232 None:intergenic
AACCTGCAAGCCGAGAGGAA+AGG 0.606711 4.4:-44120815 None:intergenic
GATCATATGGGTTCACCATG+GGG 0.606822 4.4:-44121701 None:intergenic
GTGGAAGAATCAATTAGGCA+AGG 0.615184 4.4:+44122231 MS.gene049865:CDS
AGTTTCTTATCAGGGAAGCA+TGG 0.625370 4.4:+44121840 MS.gene049865:CDS
ACAGGGAATGGATGACAAAG+TGG 0.625940 4.4:+44123206 MS.gene049865:intron
TCTATGAGGATTTCTGGCAA+AGG 0.628041 4.4:+44122205 MS.gene049865:CDS
GCTTCCGGATGGAAGATACA+TGG 0.631513 4.4:+44120728 MS.gene049865:CDS
TGACAAACCAAGCATGAAGT+GGG 0.631660 4.4:-44119548 None:intergenic
AGGATCATATGGGTTCACCA+TGG 0.635002 4.4:-44121703 None:intergenic
CAAGAAGTAGTAGCAAGTAG+TGG 0.638951 4.4:+44123447 MS.gene049865:CDS
TACATGGCATACAAGGAGCA+AGG 0.639291 4.4:+44120744 MS.gene049865:CDS
GTGTAGTAAATATCTGTCTG+TGG 0.641522 4.4:-44123335 None:intergenic
AAAGAAATGCTGAGGCTGAG+AGG 0.645314 4.4:-44123378 None:intergenic
AAATGTGAAACCCTTTGTGG+AGG 0.646017 4.4:+44122254 MS.gene049865:CDS
CTACTTCTAAAGAAATGCTG+AGG 0.649194 4.4:-44123386 None:intergenic
AAATACTTGCTTCTCAAGTG+GGG 0.651959 4.4:-44120676 None:intergenic
ATCATATGGGTTCACCATGG+GGG 0.655135 4.4:-44121700 None:intergenic
TTGTGTGTACTTCTAATCAG+TGG 0.680829 4.4:-44123478 None:intergenic
AGCATGGTCAGATTGACAGG+TGG 0.689331 4.4:+44121856 MS.gene049865:CDS
CAAACAACCTGCAAGCCGAG+AGG 0.700337 4.4:-44120820 None:intergenic
ACAAAATCAGTCATTGACGG+GGG 0.748115 4.4:-44123231 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTCATATTTGCAATT+TGG - chr4.4:44122517-44122536 None:intergenic 15.0%
!!! ATGAAAATATTAGCTTTTAT+AGG + chr4.4:44122527-44122546 MS.gene049865:intron 15.0%
!!! GTAAAATATTTAAAACTCTT+GGG - chr4.4:44122139-44122158 None:intergenic 15.0%
!!! TACTTCATTAAATTTAGTTT+AGG + chr4.4:44121331-44121350 MS.gene049865:intron 15.0%
!!! TCTAAAATGAGTTTAAAAAT+TGG - chr4.4:44122654-44122673 None:intergenic 15.0%
!!! TGAAAATATTAGCTTTTATA+GGG + chr4.4:44122528-44122547 MS.gene049865:intron 15.0%
!!! TGTAAAATATTTAAAACTCT+TGG - chr4.4:44122140-44122159 None:intergenic 15.0%
!! AGTTAAATCAATAAACAAGA+CGG + chr4.4:44123043-44123062 MS.gene049865:intron 20.0%
!! ATCTTTATACTATCACAAAA+TGG + chr4.4:44119809-44119828 MS.gene049865:intron 20.0%
!! TCTTTATACTATCACAAAAT+GGG + chr4.4:44119810-44119829 MS.gene049865:intron 20.0%
!! TCTTTCATTGTTAAGAAATT+TGG + chr4.4:44119438-44119457 MS.gene049865:CDS 20.0%
!! TTAAGAAATTTGGAAAGATT+GGG + chr4.4:44119448-44119467 MS.gene049865:CDS 20.0%
!!! AAATTCTTTTAAGTTCTCAT+AGG + chr4.4:44122747-44122766 MS.gene049865:intron 20.0%
!!! ACTTTTAACTTGACAAAATT+TGG + chr4.4:44121239-44121258 MS.gene049865:intron 20.0%
!!! ATTTCTTGTATTGTGTTTTT+AGG + chr4.4:44120538-44120557 MS.gene049865:intron 20.0%
!!! TAATTTAAAACTATGAATGC+AGG + chr4.4:44120347-44120366 MS.gene049865:intron 20.0%
!!! TACTTTTTTTTTTGAAGTTG+TGG + chr4.4:44119671-44119690 MS.gene049865:intron 20.0%
!!! TATGTATGGTTTTAAATTGT+GGG + chr4.4:44119770-44119789 MS.gene049865:intron 20.0%
!!! TCTATTTCTCAATTTATTAC+CGG + chr4.4:44121544-44121563 MS.gene049865:intron 20.0%
! AAATCTGTGTTTACAAAAGT+TGG + chr4.4:44122094-44122113 MS.gene049865:intron 25.0%
! AACAACCAAAAAAAGAAACA+TGG - chr4.4:44119619-44119638 None:intergenic 25.0%
! ACAACCAAAAAAAGAAACAT+GGG - chr4.4:44119618-44119637 None:intergenic 25.0%
! AGCATAAAACATTGAGAATT+AGG - chr4.4:44120504-44120523 None:intergenic 25.0%
! ATACATACAAACAAACATAG+AGG - chr4.4:44123126-44123145 None:intergenic 25.0%
! CTAACTGTAGAATTCTTAAA+AGG + chr4.4:44119375-44119394 MS.gene049865:CDS 25.0%
! CTTTATACTATCACAAAATG+GGG + chr4.4:44119811-44119830 MS.gene049865:intron 25.0%
! GCATAAAACATTGAGAATTA+GGG - chr4.4:44120503-44120522 None:intergenic 25.0%
! GTTAAGAAATTTGGAAAGAT+TGG + chr4.4:44119447-44119466 MS.gene049865:CDS 25.0%
! TACATACAAACAAACATAGA+GGG - chr4.4:44123125-44123144 None:intergenic 25.0%
! TTGTAAAAAAGTAACTCTCA+AGG - chr4.4:44122629-44122648 None:intergenic 25.0%
! TTTCTTGACTACAAATAATC+TGG + chr4.4:44122969-44122988 MS.gene049865:intron 25.0%
!! AATTTGCATTTCTTGATGAT+GGG + chr4.4:44119722-44119741 MS.gene049865:intron 25.0%
!! CAGATATTTACTACACTTTT+TGG + chr4.4:44123342-44123361 MS.gene049865:CDS 25.0%
!! CATGATAGTTGTTATTCAAA+AGG - chr4.4:44121295-44121314 None:intergenic 25.0%
!! TAATTCTCAATGTTTTATGC+TGG + chr4.4:44120503-44120522 MS.gene049865:intron 25.0%
!! TAGTTTAGAACTAAGAATGT+AGG + chr4.4:44119850-44119869 MS.gene049865:intron 25.0%
!! TCTAATTCAATTTGCTTTCT+GGG + chr4.4:44123148-44123167 MS.gene049865:intron 25.0%
!! TTGAATTTGCGTTTGAAATT+AGG + chr4.4:44120920-44120939 MS.gene049865:intron 25.0%
!!! CTGCAATATAAATTTTTTGG+AGG - chr4.4:44120305-44120324 None:intergenic 25.0%
!!! GTATGTATGGTTTTAAATTG+TGG + chr4.4:44119769-44119788 MS.gene049865:intron 25.0%
!!! TGGCTGCAATATAAATTTTT+TGG - chr4.4:44120308-44120327 None:intergenic 25.0%
AAAAATACTTGCTTCTCAAG+TGG - chr4.4:44120681-44120700 None:intergenic 30.0%
AAAATACTTGCTTCTCAAGT+GGG - chr4.4:44120680-44120699 None:intergenic 30.0%
ACAAAAGGAATGTGCTTAAT+TGG + chr4.4:44122343-44122362 MS.gene049865:CDS 30.0%
AGAATTAGGGTTTCAGAAAA+TGG - chr4.4:44120490-44120509 None:intergenic 30.0%
ATATTATAGTTGAACCCACT+TGG + chr4.4:44119997-44120016 MS.gene049865:intron 30.0%
ATGTACATAGATAGAAATGC+AGG - chr4.4:44121971-44121990 None:intergenic 30.0%
ATTCATAAACCCCCTAAAAA+AGG - chr4.4:44119931-44119950 None:intergenic 30.0%
CAATTTGCATTTCTTGATGA+TGG + chr4.4:44119721-44119740 MS.gene049865:intron 30.0%
GAGCAAAATGTGGATAAATT+AGG + chr4.4:44120247-44120266 MS.gene049865:intron 30.0%
GAGGAAAAAAAAGATAAGCA+AGG - chr4.4:44121915-44121934 None:intergenic 30.0%
GATGTTGTGTATTAACTTTC+AGG + chr4.4:44121663-44121682 MS.gene049865:intron 30.0%
GGAATAGGTTAATGTATGTA+TGG + chr4.4:44119756-44119775 MS.gene049865:intron 30.0%
TAAGAAGAGAGAAATATGAC+AGG - chr4.4:44122677-44122696 None:intergenic 30.0%
TATTAGGAATAGGTCAATGT+AGG + chr4.4:44120179-44120198 MS.gene049865:intron 30.0%
TGCAGAAACGAAAATACAAA+AGG + chr4.4:44122328-44122347 MS.gene049865:CDS 30.0%
TGGATGCTGATAAGAATTTA+TGG + chr4.4:44122020-44122039 MS.gene049865:intron 30.0%
TTAGTCAACATGTCCATATA+TGG + chr4.4:44121935-44121954 MS.gene049865:intron 30.0%
TTGTCATCAAAGGATCATAT+GGG - chr4.4:44121716-44121735 None:intergenic 30.0%
TTGTTCAACAATTTCTCACA+AGG - chr4.4:44119489-44119508 None:intergenic 30.0%
TTGTTGAGACATTATGAGTA+GGG + chr4.4:44120444-44120463 MS.gene049865:intron 30.0%
TTTAACCGTCCAATCTTAAT+AGG - chr4.4:44122856-44122875 None:intergenic 30.0%
TTTACCAAGCTTAAATCAGA+CGG + chr4.4:44122915-44122934 MS.gene049865:intron 30.0%
TTTGTCATCAAAGGATCATA+TGG - chr4.4:44121717-44121736 None:intergenic 30.0%
! ACTTGTTTAGAGTGAGTTAA+CGG + chr4.4:44121391-44121410 MS.gene049865:intron 30.0%
! CTCTAATTCAATTTGCTTTC+TGG + chr4.4:44123147-44123166 MS.gene049865:intron 30.0%
! GTTGTTATTCAAAAGGTAAG+TGG - chr4.4:44121288-44121307 None:intergenic 30.0%
! TGGGTTTTTGTATTAGGAAT+AGG + chr4.4:44119741-44119760 MS.gene049865:intron 30.0%
!! ATGAAGCACTGAAATATACA+CGG - chr4.4:44121604-44121623 None:intergenic 30.0%
!!! ATCACCCATGTTTCTTTTTT+TGG + chr4.4:44119611-44119630 MS.gene049865:intron 30.0%
!!! TCTTGTATTGTGTTTTTAGG+TGG + chr4.4:44120541-44120560 MS.gene049865:intron 30.0%
!!! TGAATGCAGGTTTTAAATTG+AGG + chr4.4:44120360-44120379 MS.gene049865:intron 30.0%
!!! TGATGATGGGTTTTTGTATT+AGG + chr4.4:44119735-44119754 MS.gene049865:intron 30.0%
AAATACTTGCTTCTCAAGTG+GGG - chr4.4:44120679-44120698 None:intergenic 35.0%
AAGTGGAAGCAAACATTCTT+GGG + chr4.4:44121123-44121142 MS.gene049865:CDS 35.0%
AATACAATCCCTCAAAACCA+GGG - chr4.4:44120163-44120182 None:intergenic 35.0%
AATACCTGGTTGACATGATT+TGG + chr4.4:44120605-44120624 MS.gene049865:intron 35.0%
AATTACAGAACCCAACTCAA+TGG + chr4.4:44122048-44122067 MS.gene049865:intron 35.0%
AATTAGCTGAACCATTGAGT+TGG - chr4.4:44122062-44122081 None:intergenic 35.0%
ACAGTCCTATTAAGATTGGA+CGG + chr4.4:44122848-44122867 MS.gene049865:intron 35.0%
ACATAGATAGAAATGCAGGA+TGG - chr4.4:44121967-44121986 None:intergenic 35.0%
AGGATGGTATAAGCCATATA+TGG - chr4.4:44121951-44121970 None:intergenic 35.0%
ATCAGCGAAGTTTCTTATCA+GGG + chr4.4:44121832-44121851 MS.gene049865:CDS 35.0%
ATCAGTGAATCTTTAACACC+AGG - chr4.4:44120950-44120969 None:intergenic 35.0%
ATCCAATCTATGAGGATTTC+TGG + chr4.4:44122199-44122218 MS.gene049865:CDS 35.0%
ATTAGCTGAACCATTGAGTT+GGG - chr4.4:44122061-44122080 None:intergenic 35.0%
ATTGCAGTACAATTGTTGAC+AGG + chr4.4:44123188-44123207 MS.gene049865:intron 35.0%
CAGATCACTTATATGCTGTT+TGG - chr4.4:44121640-44121659 None:intergenic 35.0%
CTGCAAATTAGAGCAAAATG+TGG + chr4.4:44120237-44120256 MS.gene049865:intron 35.0%
GATTCACTGATGGAAGAATT+TGG + chr4.4:44120959-44120978 MS.gene049865:CDS 35.0%
GTCTTTATCTCTTGGAAAGA+GGG + chr4.4:44121881-44121900 MS.gene049865:CDS 35.0%
GTGTAAGAGAGTTCATGATT+GGG + chr4.4:44119343-44119362 MS.gene049865:CDS 35.0%
GTGTAGTAAATATCTGTCTG+TGG - chr4.4:44123338-44123357 None:intergenic 35.0%
GTTATGAAAATGCATGCAGA+AGG - chr4.4:44122457-44122476 None:intergenic 35.0%
GTTGTTGAGACATTATGAGT+AGG + chr4.4:44120443-44120462 MS.gene049865:intron 35.0%
GTTTCTTTACTTGCTTTCTC+AGG + chr4.4:44119579-44119598 MS.gene049865:CDS 35.0%
TAATACAATCCCTCAAAACC+AGG - chr4.4:44120164-44120183 None:intergenic 35.0%
TAGAAGAAACCAAGAAGTCT+AGG - chr4.4:44121813-44121832 None:intergenic 35.0%
TATCAGCATCCATCTAACTA+GGG - chr4.4:44122012-44122031 None:intergenic 35.0%
TATCAGCGAAGTTTCTTATC+AGG + chr4.4:44121831-44121850 MS.gene049865:CDS 35.0%
TCAACAATGCCTCAAACTAA+GGG - chr4.4:44120889-44120908 None:intergenic 35.0%
TGAGGGATTGTATTAGGAAT+AGG + chr4.4:44120169-44120188 MS.gene049865:intron 35.0%
TGCACAAAATCAGTCATTGA+CGG - chr4.4:44123237-44123256 None:intergenic 35.0%
TGTAAGAGAGTTCATGATTG+GGG + chr4.4:44119344-44119363 MS.gene049865:CDS 35.0%
TGTCTTTATCTCTTGGAAAG+AGG + chr4.4:44121880-44121899 MS.gene049865:CDS 35.0%
TGTGTAAGAGAGTTCATGAT+TGG + chr4.4:44119342-44119361 MS.gene049865:CDS 35.0%
TTAATACCTGCAAGTCTATC+AGG - chr4.4:44121166-44121185 None:intergenic 35.0%
TTATCAGCATCCATCTAACT+AGG - chr4.4:44122013-44122032 None:intergenic 35.0%
TTCAACAATGCCTCAAACTA+AGG - chr4.4:44120890-44120909 None:intergenic 35.0%
TTGATTACTTATGATCTGCC+TGG + chr4.4:44120989-44121008 MS.gene049865:CDS 35.0%
TTGCAGTACAATTGTTGACA+GGG + chr4.4:44123189-44123208 MS.gene049865:intron 35.0%
TTGTGTCACATCAATAGAAC+AGG + chr4.4:44121445-44121464 MS.gene049865:intron 35.0%
! AAAAGAATTTTACACCGCTG+AGG - chr4.4:44122737-44122756 None:intergenic 35.0%
! AAAGAATTTTACACCGCTGA+GGG - chr4.4:44122736-44122755 None:intergenic 35.0%
! ATATGGACATGTTGACTAAG+AGG - chr4.4:44121934-44121953 None:intergenic 35.0%
! ATTTTCGTTTCTGCAACTTG+AGG - chr4.4:44122323-44122342 None:intergenic 35.0%
! CGTTTGAAATTAGGAATTCC+TGG + chr4.4:44120929-44120948 MS.gene049865:intron 35.0%
! CTACTTCTAAAGAAATGCTG+AGG - chr4.4:44123389-44123408 None:intergenic 35.0%
! GAATGTGCTTAATTGGCTTA+AGG + chr4.4:44122350-44122369 MS.gene049865:CDS 35.0%
! GATGGTAATGAGTGGATTTA+TGG - chr4.4:44122702-44122721 None:intergenic 35.0%
! GTGGCATTGAAGTTAAACAT+GGG - chr4.4:44119902-44119921 None:intergenic 35.0%
! TGGTGTTAAAGATTCACTGA+TGG + chr4.4:44120949-44120968 MS.gene049865:CDS 35.0%
! TGTGGCATTGAAGTTAAACA+TGG - chr4.4:44119903-44119922 None:intergenic 35.0%
! TTTACAAAAGTTGGTTCCGA+GGG + chr4.4:44122103-44122122 MS.gene049865:intron 35.0%
!!! CACATGTTTCCTTTTTTAGG+GGG + chr4.4:44119919-44119938 MS.gene049865:intron 35.0%
!!! CCACATGTTTCCTTTTTTAG+GGG + chr4.4:44119918-44119937 MS.gene049865:intron 35.0%
!!! GCCACATGTTTCCTTTTTTA+GGG + chr4.4:44119917-44119936 MS.gene049865:intron 35.0%
!!! GTTGACAAGTTTTGGATCAT+TGG + chr4.4:44121094-44121113 MS.gene049865:CDS 35.0%
!!! TGCCACATGTTTCCTTTTTT+AGG + chr4.4:44119916-44119935 MS.gene049865:intron 35.0%
!!! TGGTTTTGAGGGATTGTATT+AGG + chr4.4:44120163-44120182 MS.gene049865:intron 35.0%
AAATGTGAAACCCTTTGTGG+AGG + chr4.4:44122254-44122273 MS.gene049865:CDS 40.0%
AAATTGTAGTTGTGATGCCG+AGG + chr4.4:44120273-44120292 MS.gene049865:intron 40.0%
ACAAAATCAGTCATTGACGG+GGG - chr4.4:44123234-44123253 None:intergenic 40.0%
ACAGTCTACAACTGCAATTG+TGG - chr4.4:44120328-44120347 None:intergenic 40.0%
AGGAAATGTGAAACCCTTTG+TGG + chr4.4:44122251-44122270 MS.gene049865:CDS 40.0%
AGTTTCTTATCAGGGAAGCA+TGG + chr4.4:44121840-44121859 MS.gene049865:CDS 40.0%
ATAAAGACCCACTTCATGCT+TGG + chr4.4:44119541-44119560 MS.gene049865:CDS 40.0%
ATAGTTGAACCCACTTGGAT+TGG + chr4.4:44120002-44120021 MS.gene049865:intron 40.0%
ATCAACCACTAAAGTCAGAC+AGG - chr4.4:44120397-44120416 None:intergenic 40.0%
ATGACAAACCAAGCATGAAG+TGG - chr4.4:44119552-44119571 None:intergenic 40.0%
CAAGAAGTAGTAGCAAGTAG+TGG + chr4.4:44123447-44123466 MS.gene049865:CDS 40.0%
CAAGTGGAAGCAAACATTCT+TGG + chr4.4:44121122-44121141 MS.gene049865:CDS 40.0%
CAATCTTAATAGGACTGTCC+AGG - chr4.4:44122846-44122865 None:intergenic 40.0%
CACAAAATCAGTCATTGACG+GGG - chr4.4:44123235-44123254 None:intergenic 40.0%
CCACAATGTGAATGCAATTG+AGG - chr4.4:44120424-44120443 None:intergenic 40.0%
CCCCTAAAAAAGGAAACATG+TGG - chr4.4:44119921-44119940 None:intergenic 40.0%
CCTCAATTGCATTCACATTG+TGG + chr4.4:44120421-44120440 MS.gene049865:intron 40.0%
CGGCATCACAACTACAATTT+GGG - chr4.4:44120273-44120292 None:intergenic 40.0%
CTCACTTGCCATATGTGTAT+TGG - chr4.4:44122417-44122436 None:intergenic 40.0%
CTCATACTTTCCTTTCCTCT+CGG + chr4.4:44120805-44120824 MS.gene049865:CDS 40.0%
CTCTCTTCGTTTGTCATCAA+AGG - chr4.4:44121726-44121745 None:intergenic 40.0%
CTGGACAGTCCTATTAAGAT+TGG + chr4.4:44122844-44122863 MS.gene049865:intron 40.0%
GACGATTCCAGATTTCGTTT+GGG - chr4.4:44121037-44121056 None:intergenic 40.0%
GATGGAAGATCCAATCTATG+AGG + chr4.4:44122191-44122210 MS.gene049865:CDS 40.0%
GATTATCCCCATGCCAAATT+CGG + chr4.4:44120082-44120101 MS.gene049865:intron 40.0%
GCACAAAATCAGTCATTGAC+GGG - chr4.4:44123236-44123255 None:intergenic 40.0%
GGGATGTGGAAGAATCAATT+AGG + chr4.4:44122226-44122245 MS.gene049865:CDS 40.0%
GTACAATTGTTGACAGGGAA+TGG + chr4.4:44123194-44123213 MS.gene049865:intron 40.0%
GTACACAAACTCCCATATGA+AGG + chr4.4:44123279-44123298 MS.gene049865:CDS 40.0%
GTGGAAGAATCAATTAGGCA+AGG + chr4.4:44122231-44122250 MS.gene049865:CDS 40.0%
TAAATCAGACGGTCTGCATT+TGG + chr4.4:44122926-44122945 MS.gene049865:intron 40.0%
TACATACCTGATAGACTTGC+AGG + chr4.4:44121157-44121176 MS.gene049865:CDS 40.0%
TATCTCTTGGAAAGAGGGTA+AGG + chr4.4:44121886-44121905 MS.gene049865:intron 40.0%
TATGCCATGTATCTTCCATC+CGG - chr4.4:44120735-44120754 None:intergenic 40.0%
TCAACCAAATCATGTCAACC+AGG - chr4.4:44120612-44120631 None:intergenic 40.0%
TCAACCACTAAAGTCAGACA+GGG - chr4.4:44120396-44120415 None:intergenic 40.0%
TCAGTGAGAATAAGTGTGTC+TGG + chr4.4:44121473-44121492 MS.gene049865:intron 40.0%
TCAGTGCTTTGTCCTGAAAA+AGG - chr4.4:44122173-44122192 None:intergenic 40.0%
TCGGCATCACAACTACAATT+TGG - chr4.4:44120274-44120293 None:intergenic 40.0%
TCGTGTTAACCCTAGTTAGA+TGG + chr4.4:44122000-44122019 MS.gene049865:intron 40.0%
TCTGCAACTTGAGGTCTAAA+AGG - chr4.4:44122314-44122333 None:intergenic 40.0%
TGAAGTGGGTCTTTATCTTC+TGG - chr4.4:44119537-44119556 None:intergenic 40.0%
TGAATTCAATTGACCTTCCC+TGG + chr4.4:44120143-44120162 MS.gene049865:intron 40.0%
TGACAAACCAAGCATGAAGT+GGG - chr4.4:44119551-44119570 None:intergenic 40.0%
TGACGATTCCAGATTTCGTT+TGG - chr4.4:44121038-44121057 None:intergenic 40.0%
TGAGACATTATGAGTAGGGT+CGG + chr4.4:44120448-44120467 MS.gene049865:intron 40.0%
TGCCAGAAATCCTCATAGAT+TGG - chr4.4:44122204-44122223 None:intergenic 40.0%
TGGAAGATACATGGCATACA+AGG + chr4.4:44120737-44120756 MS.gene049865:CDS 40.0%
TTCTCGGTCCAATACACATA+TGG + chr4.4:44122406-44122425 MS.gene049865:CDS 40.0%
! ACTGAAACTCAGGAGTATAC+GGG + chr4.4:44122381-44122400 MS.gene049865:CDS 40.0%
! ACTTATGATCTGCCTGGTTT+TGG + chr4.4:44120995-44121014 MS.gene049865:CDS 40.0%
! AGAAGCATACAGCTCAATTG+AGG + chr4.4:44122772-44122791 MS.gene049865:intron 40.0%
! ATACAAGGAGCAAGGTGTTT+CGG + chr4.4:44120752-44120771 MS.gene049865:CDS 40.0%
! CACTGAAACTCAGGAGTATA+CGG + chr4.4:44122380-44122399 MS.gene049865:CDS 40.0%
! CAGATCTCATTGCCTTTTTC+AGG + chr4.4:44122158-44122177 MS.gene049865:intron 40.0%
! GGCAATTTTCACTGAAACTC+AGG + chr4.4:44122371-44122390 MS.gene049865:CDS 40.0%
! GTTTACAAAAGTTGGTTCCG+AGG + chr4.4:44122102-44122121 MS.gene049865:intron 40.0%
! TGGATCATTGGTTACTCAAG+TGG + chr4.4:44121106-44121125 MS.gene049865:CDS 40.0%
! TTGCTGTTCAAGTTCAACGT+TGG - chr4.4:44123430-44123449 None:intergenic 40.0%
! TTGTTTCCACCCTTAGTTTG+AGG + chr4.4:44120877-44120896 MS.gene049865:intron 40.0%
!! AAGTTCAACGTTGGCTTCTA+GGG - chr4.4:44123421-44123440 None:intergenic 40.0%
!! CTATGAGGATTTCTGGCAAA+GGG + chr4.4:44122206-44122225 MS.gene049865:CDS 40.0%
!! GTAGGCATGGTTCTAAATTG+CGG + chr4.4:44120197-44120216 MS.gene049865:intron 40.0%
!! TCTATGAGGATTTCTGGCAA+AGG + chr4.4:44122205-44122224 MS.gene049865:CDS 40.0%
!!! CTCTTGGTGTTGACAAGTTT+TGG + chr4.4:44121086-44121105 MS.gene049865:CDS 40.0%
!!! TCGTTTTTAGCTGATGCTCT+TGG + chr4.4:44121070-44121089 MS.gene049865:CDS 40.0%
!!! TTTTCAGGACAAAGCACTGA+TGG + chr4.4:44122173-44122192 MS.gene049865:intron 40.0%
!!! TTTTTTGGAGGTCTTCACCT+CGG - chr4.4:44120293-44120312 None:intergenic 40.0%
AAAGAAATGCTGAGGCTGAG+AGG - chr4.4:44123381-44123400 None:intergenic 45.0%
AAAGCAGCTTCCTCCACAAA+GGG - chr4.4:44122267-44122286 None:intergenic 45.0%
AAGAAATGCTGAGGCTGAGA+GGG - chr4.4:44123380-44123399 None:intergenic 45.0%
ACAATGCCTCAAACTAAGGG+TGG - chr4.4:44120886-44120905 None:intergenic 45.0%
ACAGGGAATGGATGACAAAG+TGG + chr4.4:44123206-44123225 MS.gene049865:intron 45.0%
AGGATCATATGGGTTCACCA+TGG - chr4.4:44121706-44121725 None:intergenic 45.0%
AGGTAAAAAGCCAACACCAC+CGG - chr4.4:44120029-44120048 None:intergenic 45.0%
AGGTGGCTGTCTTTATCTCT+TGG + chr4.4:44121873-44121892 MS.gene049865:CDS 45.0%
ATCATATGGGTTCACCATGG+GGG - chr4.4:44121703-44121722 None:intergenic 45.0%
ATCTCGATTCTCTGCTGTCA+GGG + chr4.4:44122795-44122814 MS.gene049865:intron 45.0%
ATTATGAGTAGGGTCGGTCT+AGG + chr4.4:44120454-44120473 MS.gene049865:intron 45.0%
CAACCACTAAAGTCAGACAG+GGG - chr4.4:44120395-44120414 None:intergenic 45.0%
CAGACCGTCTGATTTAAGCT+TGG - chr4.4:44122922-44122941 None:intergenic 45.0%
CGAAGCTTTCCTAGACTTCT+TGG + chr4.4:44121801-44121820 MS.gene049865:CDS 45.0%
GACGAAGAACCTGGAACAAA+TGG + chr4.4:44121745-44121764 MS.gene049865:CDS 45.0%
GATCATATGGGTTCACCATG+GGG - chr4.4:44121704-44121723 None:intergenic 45.0%
GGAATAGGTCAATGTAGGCA+TGG + chr4.4:44120184-44120203 MS.gene049865:intron 45.0%
GGATCATATGGGTTCACCAT+GGG - chr4.4:44121705-44121724 None:intergenic 45.0%
TACATGGCATACAAGGAGCA+AGG + chr4.4:44120744-44120763 MS.gene049865:CDS 45.0%
TCCTCATCCCAAACGAAATC+TGG + chr4.4:44121027-44121046 MS.gene049865:CDS 45.0%
TGCTTTGCAGGTCTCGAATT+GGG + chr4.4:44122281-44122300 MS.gene049865:CDS 45.0%
! AATTTTACACCGCTGAGGGA+AGG - chr4.4:44122732-44122751 None:intergenic 45.0%
! ATTTTACACCGCTGAGGGAA+GGG - chr4.4:44122731-44122750 None:intergenic 45.0%
! CAGGAGTATACGGGATTTCT+CGG + chr4.4:44122390-44122409 MS.gene049865:CDS 45.0%
! CGAGAGGAAAGGAAAGTATG+AGG - chr4.4:44120807-44120826 None:intergenic 45.0%
! TAGCTAGTCTGCTCAATACC+TGG + chr4.4:44120591-44120610 MS.gene049865:intron 45.0%
! TCCAGATTTCGTTTGGGATG+AGG - chr4.4:44121031-44121050 None:intergenic 45.0%
! TTCCATCCGGAAGCATAATG+CGG - chr4.4:44120722-44120741 None:intergenic 45.0%
! TTTTCGCGTCCATTTGTTCC+AGG - chr4.4:44121757-44121776 None:intergenic 45.0%
!! ACGTTGGCTTCTAGGGTAAT+TGG - chr4.4:44123414-44123433 None:intergenic 45.0%
!! ATGGTTCTAAATTGCGGCTG+TGG + chr4.4:44120203-44120222 MS.gene049865:intron 45.0%
!! CAAGTTCAACGTTGGCTTCT+AGG - chr4.4:44123422-44123441 None:intergenic 45.0%
!!! ATTGACCTTCCCTGGTTTTG+AGG + chr4.4:44120151-44120170 MS.gene049865:intron 45.0%
!!! GTGGTGTTGGCTTTTTACCT+TGG + chr4.4:44120029-44120048 MS.gene049865:intron 45.0%
!!! TTGACCTTCCCTGGTTTTGA+GGG + chr4.4:44120152-44120171 MS.gene049865:intron 45.0%
!!! TTTTTTTTTTTTTTAAGTTA+TGG + chr4.4:44119963-44119982 MS.gene049865:intron 5.0%
ACGAAGAGAGACGAAGAACC+TGG + chr4.4:44121736-44121755 MS.gene049865:CDS 50.0%
AGCATGGTCAGATTGACAGG+TGG + chr4.4:44121856-44121875 MS.gene049865:CDS 50.0%
AGTTTGTGTACTGCAGCTCC+AGG - chr4.4:44123270-44123289 None:intergenic 50.0%
ATAATGCGGGTAGCACTAGC+AGG - chr4.4:44120708-44120727 None:intergenic 50.0%
ATCCCCATGCCAAATTCGGT+GGG + chr4.4:44120086-44120105 MS.gene049865:intron 50.0%
CAAAGCAGCTTCCTCCACAA+AGG - chr4.4:44122268-44122287 None:intergenic 50.0%
CAATCCCTCAAAACCAGGGA+AGG - chr4.4:44120159-44120178 None:intergenic 50.0%
CCAAACTAGCCCACCGAATT+TGG - chr4.4:44120098-44120117 None:intergenic 50.0%
CTGCTTTGCAGGTCTCGAAT+TGG + chr4.4:44122280-44122299 MS.gene049865:CDS 50.0%
CTGTGCTCTTCTCAAGGTCT+CGG + chr4.4:44120055-44120074 MS.gene049865:intron 50.0%
GATCTCGATTCTCTGCTGTC+AGG + chr4.4:44122794-44122813 MS.gene049865:intron 50.0%
GCTTCCGGATGGAAGATACA+TGG + chr4.4:44120728-44120747 MS.gene049865:CDS 50.0%
GCTTTGCAGGTCTCGAATTG+GGG + chr4.4:44122282-44122301 MS.gene049865:CDS 50.0%
TAGCCCACCGAATTTGGCAT+GGG - chr4.4:44120092-44120111 None:intergenic 50.0%
TATCCCCATGCCAAATTCGG+TGG + chr4.4:44120085-44120104 MS.gene049865:intron 50.0%
TCATGTGCGTGAGCGATAGA+GGG - chr4.4:44122997-44123016 None:intergenic 50.0%
TGACACTGACACGTAGAGAC+CGG - chr4.4:44121566-44121585 None:intergenic 50.0%
TGCTACCCGCATTATGCTTC+CGG + chr4.4:44120713-44120732 MS.gene049865:CDS 50.0%
TGGAGACTGTGCTCTTCTCA+AGG + chr4.4:44120049-44120068 MS.gene049865:intron 50.0%
TGTCAGTGTCATGTCGTGTC+TGG + chr4.4:44121575-44121594 MS.gene049865:intron 50.0%
TGTGCTCTTCTCAAGGTCTC+GGG + chr4.4:44120056-44120075 MS.gene049865:intron 50.0%
TTCATGTGCGTGAGCGATAG+AGG - chr4.4:44122998-44123017 None:intergenic 50.0%
TTTGTGCATCGCGTACTACC+TGG + chr4.4:44123249-44123268 MS.gene049865:CDS 50.0%
! AAAGTTGGTTCCGAGGGCAT+AGG + chr4.4:44122109-44122128 MS.gene049865:intron 50.0%
! GGAAGCATGGTCAGATTGAC+AGG + chr4.4:44121853-44121872 MS.gene049865:CDS 50.0%
! GGGAAGGAGATGGTAATGAG+TGG - chr4.4:44122710-44122729 None:intergenic 50.0%
! TCCATCCGGAAGCATAATGC+GGG - chr4.4:44120721-44120740 None:intergenic 50.0%
! TGAGAAGAGCACAGTCTCCA+AGG - chr4.4:44120049-44120068 None:intergenic 50.0%
! TTTTACACCGCTGAGGGAAG+GGG - chr4.4:44122730-44122749 None:intergenic 50.0%
!! CCAAATTCGGTGGGCTAGTT+TGG + chr4.4:44120095-44120114 MS.gene049865:intron 50.0%
!! GGATTTCTGGCAAAGGGATG+TGG + chr4.4:44122212-44122231 MS.gene049865:CDS 50.0%
!! TGAACCCACTTGGATTGGTC+CGG + chr4.4:44120007-44120026 MS.gene049865:intron 50.0%
!!! ACACTTTTTGGAACCCCGCA+AGG + chr4.4:44123354-44123373 MS.gene049865:CDS 50.0%
AACCTGCAAGCCGAGAGGAA+AGG - chr4.4:44120818-44120837 None:intergenic 55.0%
ACCACCGGACCAATCCAAGT+GGG - chr4.4:44120014-44120033 None:intergenic 55.0%
ACCCGCATTATGCTTCCGGA+TGG + chr4.4:44120717-44120736 MS.gene049865:CDS 55.0%
AGCCCACCGAATTTGGCATG+GGG - chr4.4:44120091-44120110 None:intergenic 55.0%
CAAACAACCTGCAAGCCGAG+AGG - chr4.4:44120823-44120842 None:intergenic 55.0%
CACTAAAGTCAGACAGGGGC+AGG - chr4.4:44120391-44120410 None:intergenic 55.0%
CTAGCCCACCGAATTTGGCA+TGG - chr4.4:44120093-44120112 None:intergenic 55.0%
CTGCCCCTGTCTGACTTTAG+TGG + chr4.4:44120389-44120408 MS.gene049865:intron 55.0%
CTTGGGATAGCCTATGCCCT+CGG - chr4.4:44122122-44122141 None:intergenic 55.0%
GGATCGCTCTCACCAAAACC+AGG - chr4.4:44121010-44121029 None:intergenic 55.0%
GTTCACCATGGGGGCAAACA+TGG - chr4.4:44121694-44121713 None:intergenic 55.0%
! GCTTGCTAACGGCATGACCA+GGG - chr4.4:44122824-44122843 None:intergenic 55.0%
! TGTGGAGGAAGCTGCTTTGC+AGG + chr4.4:44122269-44122288 MS.gene049865:CDS 55.0%
! TTCCTTTCCTCTCGGCTTGC+AGG + chr4.4:44120813-44120832 MS.gene049865:CDS 55.0%
!! GGACTGTCCAGGCTTGCTAA+CGG - chr4.4:44122835-44122854 None:intergenic 55.0%
!! TTGGATTGGTCCGGTGGTGT+TGG + chr4.4:44120016-44120035 MS.gene049865:intron 55.0%
CACCACCGGACCAATCCAAG+TGG - chr4.4:44120015-44120034 None:intergenic 60.0%
CTCTGCTGTCAGGGAATCCC+TGG + chr4.4:44122804-44122823 MS.gene049865:intron 60.0%
CTGAGGGAAGGGGAAGGAGA+TGG - chr4.4:44122720-44122739 None:intergenic 60.0%
GGTCATGCCGTTAGCAAGCC+TGG + chr4.4:44122825-44122844 MS.gene049865:intron 60.0%
TCTCCTTCCCCTTCCCTCAG+CGG + chr4.4:44122720-44122739 MS.gene049865:intron 60.0%
TGCTGCCATGTTTGCCCCCA+TGG + chr4.4:44121686-44121705 MS.gene049865:CDS 60.0%
!! ACCCACTTGGATTGGTCCGG+TGG + chr4.4:44120010-44120029 MS.gene049865:intron 60.0%
!! GGCTTGCTAACGGCATGACC+AGG - chr4.4:44122825-44122844 None:intergenic 60.0%
ACACCGCTGAGGGAAGGGGA+AGG - chr4.4:44122726-44122745 None:intergenic 65.0%
CTGAGGCTGAGAGGGCCTTG+CGG - chr4.4:44123372-44123391 None:intergenic 65.0%
TGAGGCTGAGAGGGCCTTGC+GGG - chr4.4:44123371-44123390 None:intergenic 65.0%
GAGGCTGAGAGGGCCTTGCG+GGG - chr4.4:44123370-44123389 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 44119309 44123488 44119309 ID=MS.gene049865
chr4.4 mRNA 44119309 44123488 44119309 ID=MS.gene049865.t1;Parent=MS.gene049865
chr4.4 exon 44119309 44119600 44119309 ID=MS.gene049865.t1.exon1;Parent=MS.gene049865.t1
chr4.4 CDS 44119309 44119600 44119309 ID=cds.MS.gene049865.t1;Parent=MS.gene049865.t1
chr4.4 exon 44120643 44120834 44120643 ID=MS.gene049865.t1.exon2;Parent=MS.gene049865.t1
chr4.4 CDS 44120643 44120834 44120643 ID=cds.MS.gene049865.t1;Parent=MS.gene049865.t1
chr4.4 exon 44120942 44121178 44120942 ID=MS.gene049865.t1.exon3;Parent=MS.gene049865.t1
chr4.4 CDS 44120942 44121178 44120942 ID=cds.MS.gene049865.t1;Parent=MS.gene049865.t1
chr4.4 exon 44121685 44121902 44121685 ID=MS.gene049865.t1.exon4;Parent=MS.gene049865.t1
chr4.4 CDS 44121685 44121902 44121685 ID=cds.MS.gene049865.t1;Parent=MS.gene049865.t1
chr4.4 exon 44122180 44122431 44122180 ID=MS.gene049865.t1.exon5;Parent=MS.gene049865.t1
chr4.4 CDS 44122180 44122431 44122180 ID=cds.MS.gene049865.t1;Parent=MS.gene049865.t1
chr4.4 exon 44123210 44123488 44123210 ID=MS.gene049865.t1.exon6;Parent=MS.gene049865.t1
chr4.4 CDS 44123210 44123488 44123210 ID=cds.MS.gene049865.t1;Parent=MS.gene049865.t1
Gene Sequence

>MS.gene049865

ATGAATCAAAGAGAGTTGATACGTTTCAAGATATGTGTAAGAGAGTTCATGATTGGGGTTTCAGAACTAACTGTAGAATTCTTAAAAGGTTGCAGAGATATAGTGAAACAAAGTATAGTGAATGAAGATTCTTTCATTGTTAAGAAATTTGGAAAGATTGGGAAGAGAGTGAGAAAACCTTGTGAGAAATTGTTGAACAAATTGAGTTACTTTAATGAGTATTTGCCAGAAGATAAAGACCCACTTCATGCTTGGTTTGTCATCTTGTTCGTTTCTTTACTTGCTTTCTCAGGTTAATTTCAATCACCCATGTTTCTTTTTTTGGTTGTTTATTTATAAAAATCATAAAAATTTAATCTTTTTACTTTTTTTTTTGAAGTTGTGGATTCTTAATTTATGTTATAATTGAGTTCAATTTGCATTTCTTGATGATGGGTTTTTGTATTAGGAATAGGTTAATGTATGTATGGTTTTAAATTGTGGGTGTTGTTATGCTGCATATCTTTATACTATCACAAAATGGGGTTGCAATTGCAGACTGTAGTTTAGAACTAAGAATGTAGGTTATAAATCGAGATCATAATCGTACTCCCATGTTTAACTTCAATGCCACATGTTTCCTTTTTTAGGGGGTTTATGAATAAATTTCATTTTTTTTTTTTTTTTTTAAGTTATGGATTCATAATTGATATTATAGTTGAACCCACTTGGATTGGTCCGGTGGTGTTGGCTTTTTACCTTGGAGACTGTGCTCTTCTCAAGGTCTCGGGTTCGATTATCCCCATGCCAAATTCGGTGGGCTAGTTTGGCTTCTTAAAAAGAAAATGTTATAGTTGAATTCAATTGACCTTCCCTGGTTTTGAGGGATTGTATTAGGAATAGGTCAATGTAGGCATGGTTCTAAATTGCGGCTGTGGTTGCAATTATGCTGCAAATTAGAGCAAAATGTGGATAAATTAGGCCCAAATTGTAGTTGTGATGCCGAGGTGAAGACCTCCAAAAAATTTATATTGCAGCCACAATTGCAGTTGTAGACTGTAATTTAAAACTATGAATGCAGGTTTTAAATTGAGGCTGCGCCTGCCCCTGTCTGACTTTAGTGGTTGATCTAGCCTCAATTGCATTCACATTGTGGTTGTTGAGACATTATGAGTAGGGTCGGTCTAGGTTGTCGCTGACCATTTTCTGAAACCCTAATTCTCAATGTTTTATGCTGGAATGCTAGAAAGATTTCTTGTATTGTGTTTTTAGGTGGTTTTGTTTGTTTATGTTGTATGTGTTATAGCTAGTCTGCTCAATACCTGGTTGACATGATTTGGTTGATTTATTTGCAGCTTTGTATGTAAATTTTGAGTATGATCAATCTGCCCCACTTGAGAAGCAAGTATTTTTGCATCCTGCTAGTGCTACCCGCATTATGCTTCCGGATGGAAGATACATGGCATACAAGGAGCAAGGTGTTTCGGCTGACAGAGCAAGATTTTCGATTATTGCTCCTCATACTTTCCTTTCCTCTCGGCTTGCAGGTTGTTTGAACTTTAAAGCTTCAATTTTATGTTTTCAAGTTTTTGTTTCCACCCTTAGTTTGAGGCATTGTTGAATATTTTGCTTTTGAATTTGCGTTTGAAATTAGGAATTCCTGGTGTTAAAGATTCACTGATGGAAGAATTTGGCGTTCACTTGATTACTTATGATCTGCCTGGTTTTGGTGAGAGCGATCCTCATCCCAAACGAAATCTGGAATCGTCAGCAATAGATATGTCGTTTTTAGCTGATGCTCTTGGTGTTGACAAGTTTTGGATCATTGGTTACTCAAGTGGAAGCAAACATTCTTGGGCTGCGCTTAGATACATACCTGATAGACTTGCAGGTATTAATAGTTCTTTTTTTGTCTTATAACTTTATTTTGCTTTTTATTTACTTACATGCAACTTTTAACTTGACAAAATTTGGAACTTTCATAGTCACTCTTCTGTCCACTTACCTTTTGAATAACAACTATCATGCTCATATGTTTTAGTGTACTTCATTAAATTTAGTTTAGGACGTCTGCTCTTTTTTCGTAACTAAAACACATGTATAACTTGTTTAGAGTGAGTTAACGGTAAGTTTGTATATAAATGTTGAATAGTATATTTGTGTCACATCAATAGAACAGGTTTTTTCAGTGAGAATAAGTGTGTCTGGTGTTTGACACATGACAGTGTCTGACACGTGTGATGACATTCAATCACTTCTATTTCTCAATTTATTACCGGTCTCTACGTGTCAGTGTCATGTCGTGTCTGGTGTCCGTGTATATTTCAGTGCTTCATACATACTAGTGTGCCAAACAGCATATAAGTGATCTGTCAGATGTTGTGTATTAACTTTCAGGTGCTGCCATGTTTGCCCCCATGGTGAACCCATATGATCCTTTGATGACAAACGAAGAGAGACGAAGAACCTGGAACAAATGGACGCGAAAAAGAAAATTGATGTACTTCTTAGCTCGAAGCTTTCCTAGACTTCTTGGTTTCTTCTATCAGCGAAGTTTCTTATCAGGGAAGCATGGTCAGATTGACAGGTGGCTGTCTTTATCTCTTGGAAAGAGGGTAAGGAAGCCTTGCTTATCTTTTTTTTCCTCTTAGTCAACATGTCCATATATGGCTTATACCATCCTGCATTTCTATCTATGTACATTCATGTCTATCGTGTTAACCCTAGTTAGATGGATGCTGATAAGAATTTATGGATTGAAATTACAGAACCCAACTCAATGGTTCAGCTAATTACGTGTAATGTAAAATCTGTGTTTACAAAAGTTGGTTCCGAGGGCATAGGCTATCCCAAGAGTTTTAAATATTTTACAGATCTCATTGCCTTTTTCAGGACAAAGCACTGATGGAAGATCCAATCTATGAGGATTTCTGGCAAAGGGATGTGGAAGAATCAATTAGGCAAGGAAATGTGAAACCCTTTGTGGAGGAAGCTGCTTTGCAGGTCTCGAATTGGGGTTTCAGCCTTTTAGACCTCAAGTTGCAGAAACGAAAATACAAAAGGAATGTGCTTAATTGGCTTAAGGCAATTTTCACTGAAACTCAGGAGTATACGGGATTTCTCGGTCCAATACACATATGGCAAGTGAGTGCATCGCTGTTTTGATCCTTCTGCATGCATTTTCATAACATAACAAATTTTAACACAAATCAGCAATGACAATGTGCCAAATTGCAAATATGAAAATATTAGCTTTTATAGGGTATACGACAAGTAATTTGCATAAAATTGTTACTGATATACATATAGAAATTACTAGACAAATACTGCACTACATTCCTTGAGAGTTACTTTTTTACAACTCCAATTTTTAAACTCATTTTAGACCTGTCATATTTCTCTCTTCTTATTCCATAAATCCACTCATTACCATCTCCTTCCCCTTCCCTCAGCGGTGTAAAATTCTTTTAAGTTCTCATAGGTAAGAAGCATACAGCTCAATTGAGGATCTCGATTCTCTGCTGTCAGGGAATCCCTGGTCATGCCGTTAGCAAGCCTGGACAGTCCTATTAAGATTGGACGGTTAAATTTTTGACTTAATTCTTTATTAAATCTCTTCAAATCTGATTTACCAAGCTTAAATCAGACGGTCTGCATTTGGTGTCAACATGACTATTAAGATTTCTTGACTACAAATAATCTGGAACCCTCTATCGCTCACGCACATGAAAAGAAAACATTGAATAGTTGACTACAGTTAAATCAATAAACAAGACGGTCTAGATTTTCTGTATACGTGACTATACAGATTTCACGATCGTAAAGAATCTAGATCCCTCTATGTTTGTTTGTATGTATGCTCTAATTCAATTTGCTTTCTGGGATTGAAAATATAAACTTATTGCAGTACAATTGTTGACAGGGAATGGATGACAAAGTGGTTCCCCCGTCAATGACTGATTTTGTGCATCGCGTACTACCTGGAGCTGCAGTACACAAACTCCCATATGAAGGCCATTTCACATATATATACTTTTGTGATGAATGCCACAGACAGATATTTACTACACTTTTTGGAACCCCGCAAGGCCCTCTCAGCCTCAGCATTTCTTTAGAAGTAGATCCAATTACCCTAGAAGCCAACGTTGAACTTGAACAGCAAGAAGTAGTAGCAAGTAGTGGTGATTATGCCACTGATTAG

Protein sequence

>MS.gene049865.t1

MNQRELIRFKICVREFMIGVSELTVEFLKGCRDIVKQSIVNEDSFIVKKFGKIGKRVRKPCEKLLNKLSYFNEYLPEDKDPLHAWFVILFVSLLAFSALYVNFEYDQSAPLEKQVFLHPASATRIMLPDGRYMAYKEQGVSADRARFSIIAPHTFLSSRLAGIPGVKDSLMEEFGVHLITYDLPGFGESDPHPKRNLESSAIDMSFLADALGVDKFWIIGYSSGSKHSWAALRYIPDRLAGAAMFAPMVNPYDPLMTNEERRRTWNKWTRKRKLMYFLARSFPRLLGFFYQRSFLSGKHGQIDRWLSLSLGKRDKALMEDPIYEDFWQRDVEESIRQGNVKPFVEEAALQVSNWGFSLLDLKLQKRKYKRNVLNWLKAIFTETQEYTGFLGPIHIWQGMDDKVVPPSMTDFVHRVLPGAAVHKLPYEGHFTYIYFCDECHRQIFTTLFGTPQGPLSLSISLEVDPITLEANVELEQQEVVASSGDYATD