Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071839.t1 | XP_003594829.1 | 99.4 | 157 | 1 | 0 | 1 | 157 | 1 | 157 | 5.40E-82 | 313.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071839.t1 | P93333 | 99.4 | 157 | 1 | 0 | 1 | 157 | 1 | 157 | 1.3e-84 | 313.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071839.t1 | A0A396J749 | 99.4 | 157 | 1 | 0 | 1 | 157 | 1 | 157 | 3.9e-82 | 313.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene058179 | MS.gene071839 | 0.824778 | 6.71E-54 | -1.69E-46 |
MS.gene058180 | MS.gene071839 | 0.853458 | 2.36E-61 | -1.69E-46 |
MS.gene058218 | MS.gene071839 | 0.808311 | 3.30E-50 | -1.69E-46 |
MS.gene059037 | MS.gene071839 | 0.833957 | 3.96E-56 | -1.69E-46 |
MS.gene059038 | MS.gene071839 | 0.809487 | 1.85E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071839.t1 | MTR_2g035100 | 99.363 | 157 | 1 | 0 | 1 | 157 | 1 | 157 | 1.42e-109 | 308 |
MS.gene071839.t1 | MTR_2g035105 | 98.089 | 157 | 3 | 0 | 1 | 157 | 1 | 157 | 3.59e-108 | 305 |
MS.gene071839.t1 | MTR_2g035130 | 87.261 | 157 | 20 | 0 | 1 | 157 | 1 | 157 | 6.46e-96 | 274 |
MS.gene071839.t1 | MTR_2g035150 | 84.713 | 157 | 24 | 0 | 1 | 157 | 1 | 157 | 1.10e-93 | 268 |
MS.gene071839.t1 | MTR_2g035120 | 83.439 | 157 | 26 | 0 | 1 | 157 | 1 | 157 | 2.34e-93 | 267 |
MS.gene071839.t1 | MTR_6g033450 | 71.338 | 157 | 45 | 0 | 1 | 157 | 1 | 157 | 3.78e-79 | 231 |
MS.gene071839.t1 | MTR_4g120970 | 71.338 | 157 | 45 | 0 | 1 | 157 | 1 | 157 | 3.78e-79 | 231 |
MS.gene071839.t1 | MTR_2g035320 | 64.968 | 157 | 55 | 0 | 1 | 157 | 1 | 157 | 1.18e-68 | 205 |
MS.gene071839.t1 | MTR_2g035190 | 61.146 | 157 | 61 | 0 | 1 | 157 | 1 | 157 | 2.36e-65 | 196 |
MS.gene071839.t1 | MTR_2g035210 | 61.146 | 157 | 61 | 0 | 1 | 157 | 1 | 157 | 2.91e-65 | 196 |
MS.gene071839.t1 | MTR_2g035220 | 61.783 | 157 | 60 | 0 | 1 | 157 | 1 | 157 | 2.43e-64 | 194 |
MS.gene071839.t1 | MTR_2g035170 | 59.873 | 157 | 63 | 0 | 1 | 157 | 1 | 157 | 1.88e-62 | 189 |
MS.gene071839.t1 | MTR_2g435310 | 41.667 | 156 | 90 | 1 | 1 | 155 | 1 | 156 | 2.05e-40 | 133 |
MS.gene071839.t1 | MTR_4g120760 | 40.385 | 156 | 92 | 1 | 1 | 155 | 1 | 156 | 1.17e-37 | 126 |
MS.gene071839.t1 | MTR_4g120760 | 40.385 | 156 | 92 | 1 | 1 | 155 | 1 | 156 | 1.28e-37 | 126 |
MS.gene071839.t1 | MTR_2g035320 | 63.542 | 96 | 35 | 0 | 62 | 157 | 27 | 122 | 5.63e-37 | 123 |
MS.gene071839.t1 | MTR_4g120950 | 44.099 | 161 | 83 | 5 | 1 | 157 | 1 | 158 | 1.99e-32 | 113 |
MS.gene071839.t1 | MTR_4g120940 | 62.500 | 88 | 30 | 1 | 70 | 157 | 35 | 119 | 2.56e-30 | 106 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 40 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATCAATAACCTTTGGAATA+AGG | 0.200219 | 2.2:+53794853 | None:intergenic |
AGCTATATGCTTTAGTAATC+AGG | 0.289844 | 2.2:+53792944 | None:intergenic |
CCCTTGATTTCCTCTTCACT+TGG | 0.329042 | 2.2:+53793025 | None:intergenic |
ACTTGGTGCAGCATCACCTT+TGG | 0.357443 | 2.2:+53793042 | None:intergenic |
AGCGAAAGTAAGTTTCTTGA+TGG | 0.359167 | 2.2:+53794785 | None:intergenic |
GAGATCTTCTCCACTGTGTC+TGG | 0.364866 | 2.2:+53793133 | None:intergenic |
CTTCAACGATTTCAATACTT+TGG | 0.365905 | 2.2:+53794826 | None:intergenic |
GGCTCTTGAAGGTTACGTTT+TGG | 0.372797 | 2.2:-53792972 | MS.gene071839:CDS |
AGTAAGTTTCTTGATGGTTC+CGG | 0.383147 | 2.2:+53794791 | None:intergenic |
GCTTACAACTACAGCATAGT+TGG | 0.425478 | 2.2:-53793169 | MS.gene071839:CDS |
TGGATGGCATCAATAACCTT+TGG | 0.428619 | 2.2:+53794846 | None:intergenic |
TTTGAGTCTAAATTGTCTGC+AGG | 0.453113 | 2.2:-53793109 | MS.gene071839:CDS |
TTTGCAATGGATCCTCCATC+TGG | 0.453770 | 2.2:+53793085 | None:intergenic |
CAAAGTATTGAAATCGTTGA+AGG | 0.454502 | 2.2:-53794825 | MS.gene071839:CDS |
AACGATTTCAATACTTTGGA+TGG | 0.464520 | 2.2:+53794830 | None:intergenic |
CATGGGTGTATTCAACTTTG+AGG | 0.475033 | 2.2:-53794940 | MS.gene071839:CDS |
AGAGCTTTGTAAAGTCTAGC+AGG | 0.480944 | 2.2:+53794894 | None:intergenic |
ACCAAGTGAAGAGGAAATCA+AGG | 0.498836 | 2.2:-53793026 | MS.gene071839:CDS |
TACAGCATAGTTGGAGGTGG+TGG | 0.504513 | 2.2:-53793160 | MS.gene071839:CDS |
AAGAAACTTACTTTCGCTGA+AGG | 0.507215 | 2.2:-53794780 | MS.gene071839:intron |
ATTGAAATCGTTGAAGGAAA+CGG | 0.515634 | 2.2:-53794819 | MS.gene071839:CDS |
TTCTGATAACCTTATTCCAA+AGG | 0.526563 | 2.2:-53794862 | MS.gene071839:CDS |
AAAGTATGATTTGCACAAAG+TGG | 0.527363 | 2.2:-53793215 | MS.gene071839:CDS |
TTTCACAGTAAGCTTTGCAA+TGG | 0.527944 | 2.2:+53793072 | None:intergenic |
TGCAGACAATTTAGACTCAA+AGG | 0.553148 | 2.2:+53793111 | None:intergenic |
AAATTGTCTGCAGGGCCAGA+TGG | 0.558648 | 2.2:-53793100 | MS.gene071839:CDS |
GTTGAAGGAAACGGTGGCGC+CGG | 0.563040 | 2.2:-53794810 | MS.gene071839:CDS |
GGTGGCAAAGCTAGAGGTGA+TGG | 0.567538 | 2.2:-53793004 | MS.gene071839:CDS |
TTGAGTCTAAATTGTCTGCA+GGG | 0.579973 | 2.2:-53793108 | MS.gene071839:CDS |
TACAACTACAGCATAGTTGG+AGG | 0.596062 | 2.2:-53793166 | MS.gene071839:CDS |
TGATGCTGCACCAAGTGAAG+AGG | 0.603594 | 2.2:-53793035 | MS.gene071839:CDS |
TTGTCTGCAGGGCCAGATGG+AGG | 0.618761 | 2.2:-53793097 | MS.gene071839:CDS |
AACTACAGCATAGTTGGAGG+TGG | 0.623337 | 2.2:-53793163 | MS.gene071839:CDS |
ATCAAGGGTGGCAAAGCTAG+AGG | 0.623874 | 2.2:-53793010 | MS.gene071839:CDS |
AGCAGGAGCTACAATAGATG+TGG | 0.635518 | 2.2:+53794911 | None:intergenic |
ACTGTGAAATACTTCACCAA+AGG | 0.653868 | 2.2:-53793058 | MS.gene071839:CDS |
CCAAGTGAAGAGGAAATCAA+GGG | 0.664848 | 2.2:-53793025 | MS.gene071839:CDS |
GAAATCGTTGAAGGAAACGG+TGG | 0.695425 | 2.2:-53794816 | MS.gene071839:CDS |
AGTGAAGAGGAAATCAAGGG+TGG | 0.695634 | 2.2:-53793022 | MS.gene071839:CDS |
TGGTGGACTTCCAGACACAG+TGG | 0.728449 | 2.2:-53793143 | MS.gene071839:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATATATAATAAAAGAAAAG+AGG | + | chr2.2:53794482-53794501 | None:intergenic | 10.0% |
!!! | CTTTTAAAAAATAATTTTTC+TGG | + | chr2.2:53794416-53794435 | None:intergenic | 10.0% |
!!! | GTGTTATTAAATATATTTAA+TGG | - | chr2.2:53794302-53794321 | MS.gene071839:intron | 10.0% |
!!! | TAAACATTTTATTTTACTTA+GGG | + | chr2.2:53793190-53793209 | None:intergenic | 10.0% |
!!! | TTTTTATACAGTTTTTAAAT+AGG | + | chr2.2:53794388-53794407 | None:intergenic | 10.0% |
!! | AAGATAAATAACATAAATAG+TGG | - | chr2.2:53794248-53794267 | MS.gene071839:intron | 15.0% |
!!! | AAACTACAAATATAAGTTTT+TGG | + | chr2.2:53794182-53794201 | None:intergenic | 15.0% |
!!! | CTAAACATTTTATTTTACTT+AGG | + | chr2.2:53793191-53793210 | None:intergenic | 15.0% |
!!! | TTTGTAGTTTTTTTTTCTTA+GGG | + | chr2.2:53793563-53793582 | None:intergenic | 15.0% |
!!! | TTTTGTAGTTTTTTTTTCTT+AGG | + | chr2.2:53793564-53793583 | None:intergenic | 15.0% |
!! | AAAATAAAAAACATAACACG+TGG | - | chr2.2:53793634-53793653 | MS.gene071839:intron | 20.0% |
!! | ATACCAATGTTATATAACAT+TGG | - | chr2.2:53793907-53793926 | MS.gene071839:intron | 20.0% |
!! | ATATATGTGAAAAATTGAAG+TGG | - | chr2.2:53793148-53793167 | MS.gene071839:CDS | 20.0% |
!! | CAATGAAATTTCATAATTAG+AGG | + | chr2.2:53793824-53793843 | None:intergenic | 20.0% |
!! | GAATATTCGATTTAATCTAA+TGG | - | chr2.2:53793224-53793243 | MS.gene071839:CDS | 20.0% |
!!! | AAAGTAAAGAAATGAGTTTT+GGG | - | chr2.2:53793315-53793334 | MS.gene071839:intron | 20.0% |
!!! | AGTTTTTAAATAGGCTTATT+TGG | + | chr2.2:53794379-53794398 | None:intergenic | 20.0% |
!!! | ATTTAATGGATATTTATCGT+CGG | - | chr2.2:53794316-53794335 | MS.gene071839:intron | 20.0% |
!!! | CTTGATTTGAGAAAATATTT+TGG | - | chr2.2:53793487-53793506 | MS.gene071839:intron | 20.0% |
!!! | TAAAGTAAAGAAATGAGTTT+TGG | - | chr2.2:53793314-53793333 | MS.gene071839:intron | 20.0% |
!!! | TAAATAACATAAATAGTGGA+AGG | - | chr2.2:53794252-53794271 | MS.gene071839:intron | 20.0% |
!!! | TTGTAGTTTTTTTTCTTAGA+GGG | - | chr2.2:53793748-53793767 | MS.gene071839:intron | 20.0% |
!!! | TTGTAGTTTTTTTTTCTTAG+GGG | + | chr2.2:53793562-53793581 | None:intergenic | 20.0% |
!!! | TTTGTAGTTTTTTTTCTTAG+AGG | - | chr2.2:53793747-53793766 | MS.gene071839:intron | 20.0% |
!!! | TTTTTACCGTAAAACAATAT+GGG | - | chr2.2:53794207-53794226 | MS.gene071839:intron | 20.0% |
!!! | TTTTTTACCGTAAAACAATA+TGG | - | chr2.2:53794206-53794225 | MS.gene071839:intron | 20.0% |
! | AACAAGAATCAAACATTTGA+TGG | + | chr2.2:53794442-53794461 | None:intergenic | 25.0% |
! | AGTCTAAAGAAGAAAGAAAA+AGG | + | chr2.2:53793971-53793990 | None:intergenic | 25.0% |
! | ATATAACATTGGTATCTCAA+TGG | + | chr2.2:53793902-53793921 | None:intergenic | 25.0% |
! | ATTTCTACTTAGCAAAAGTT+TGG | - | chr2.2:53794123-53794142 | MS.gene071839:intron | 25.0% |
! | CTAAAATTGCAAAACTTATG+AGG | + | chr2.2:53793590-53793609 | None:intergenic | 25.0% |
! | GCAGTGAAATTTCATAATTA+GGG | + | chr2.2:53793341-53793360 | None:intergenic | 25.0% |
! | TGATCAATGTTATACAACAT+TGG | - | chr2.2:53794013-53794032 | MS.gene071839:intron | 25.0% |
! | TTAATCTAATGGTCATAGAT+GGG | - | chr2.2:53793235-53793254 | MS.gene071839:intron | 25.0% |
! | TTTAATCTAATGGTCATAGA+TGG | - | chr2.2:53793234-53793253 | MS.gene071839:intron | 25.0% |
! | TTTCACAATTACTAACATGA+TGG | + | chr2.2:53794631-53794650 | None:intergenic | 25.0% |
!! | AAACTACAAAGTTGTGATTT+TGG | + | chr2.2:53793774-53793793 | None:intergenic | 25.0% |
!! | AATGTTTAAGACACTACTTA+TGG | - | chr2.2:53793450-53793469 | MS.gene071839:intron | 25.0% |
!! | AGATTGTCAATTTTGTACTA+AGG | + | chr2.2:53794079-53794098 | None:intergenic | 25.0% |
!!! | TGTAGTTTTTTTTTCTTAGG+GGG | + | chr2.2:53793561-53793580 | None:intergenic | 25.0% |
!!! | TTGTTTCCCATATTGTTTTA+CGG | + | chr2.2:53794216-53794235 | None:intergenic | 25.0% |
!!! | TTTTATTTTTTTGCCCTTGT+GGG | + | chr2.2:53793623-53793642 | None:intergenic | 25.0% |
!!! | TTTTGCAATTTTAGCAGTAT+TGG | - | chr2.2:53793596-53793615 | MS.gene071839:intron | 25.0% |
!!! | TTTTTATTTTTTTGCCCTTG+TGG | + | chr2.2:53793624-53793643 | None:intergenic | 25.0% |
AAATTGCAAAACTTATGAGG+CGG | + | chr2.2:53793587-53793606 | None:intergenic | 30.0% | |
AACGATTTCAATACTTTGGA+TGG | + | chr2.2:53793067-53793086 | None:intergenic | 30.0% | |
ATCGATATACCAAATTGGTA+GGG | + | chr2.2:53793867-53793886 | None:intergenic | 30.0% | |
ATTGAAATCGTTGAAGGAAA+CGG | - | chr2.2:53793075-53793094 | MS.gene071839:CDS | 30.0% | |
CGCAGTGAAATTTCATAATT+AGG | + | chr2.2:53793342-53793361 | None:intergenic | 30.0% | |
CTTCAACGATTTCAATACTT+TGG | + | chr2.2:53793071-53793090 | None:intergenic | 30.0% | |
TATCGATATACCAAATTGGT+AGG | + | chr2.2:53793868-53793887 | None:intergenic | 30.0% | |
TGGCCAATGTTATATAACAT+TGG | + | chr2.2:53793913-53793932 | None:intergenic | 30.0% | |
TTCTGATAACCTTATTCCAA+AGG | - | chr2.2:53793032-53793051 | MS.gene071839:CDS | 30.0% | |
! | AAAGTATGATTTGCACAAAG+TGG | - | chr2.2:53794679-53794698 | MS.gene071839:intron | 30.0% |
! | GATATGTTGCACATTTTCAT+TGG | + | chr2.2:53793933-53793952 | None:intergenic | 30.0% |
!! | CAAAGTATTGAAATCGTTGA+AGG | - | chr2.2:53793069-53793088 | MS.gene071839:CDS | 30.0% |
!! | CATCAATAACCTTTGGAATA+AGG | + | chr2.2:53793044-53793063 | None:intergenic | 30.0% |
!!! | TTTATTTTTTTGCCCTTGTG+GGG | + | chr2.2:53793622-53793641 | None:intergenic | 30.0% |
AAAGACCTAATTGAACCAAG+TGG | - | chr2.2:53794601-53794620 | MS.gene071839:intron | 35.0% | |
AAGAAACTTACTTTCGCTGA+AGG | - | chr2.2:53793114-53793133 | MS.gene071839:CDS | 35.0% | |
ACTGTGAAATACTTCACCAA+AGG | - | chr2.2:53794836-53794855 | MS.gene071839:CDS | 35.0% | |
AGCGAAAGTAAGTTTCTTGA+TGG | + | chr2.2:53793112-53793131 | None:intergenic | 35.0% | |
ATACAACATTGGTATCCCAA+TGG | - | chr2.2:53794024-53794043 | MS.gene071839:intron | 35.0% | |
ATCGCAACTTTGTGAAAGTT+AGG | + | chr2.2:53793533-53793552 | None:intergenic | 35.0% | |
CTTCTTTAGACTTTCCTATG+TGG | - | chr2.2:53793979-53793998 | MS.gene071839:intron | 35.0% | |
GAAACGAATCAATTATGTGC+AGG | - | chr2.2:53794647-53794666 | MS.gene071839:intron | 35.0% | |
TACTAAGGACCTTTAACGTA+CGG | + | chr2.2:53794064-53794083 | None:intergenic | 35.0% | |
TCAATGAAGATGTACCACAT+AGG | + | chr2.2:53793996-53794015 | None:intergenic | 35.0% | |
TGCAGACAATTTAGACTCAA+AGG | + | chr2.2:53794786-53794805 | None:intergenic | 35.0% | |
TTGAGTCTAAATTGTCTGCA+GGG | - | chr2.2:53794786-53794805 | MS.gene071839:CDS | 35.0% | |
TTTCACAGTAAGCTTTGCAA+TGG | + | chr2.2:53794825-53794844 | None:intergenic | 35.0% | |
TTTGAGTCTAAATTGTCTGC+AGG | - | chr2.2:53794785-53794804 | MS.gene071839:CDS | 35.0% | |
! | AGTAAGTTTCTTGATGGTTC+CGG | + | chr2.2:53793106-53793125 | None:intergenic | 35.0% |
! | CTTTCACAAAGTTGCGATTT+TGG | - | chr2.2:53793535-53793554 | MS.gene071839:intron | 35.0% |
! | TTTTGCACATGTGGCATTTT+TGG | + | chr2.2:53793714-53793733 | None:intergenic | 35.0% |
!! | GTGGTATCGATATACCAAAT+TGG | + | chr2.2:53793872-53793891 | None:intergenic | 35.0% |
AAGTGGTTTCCGTACGTTAA+AGG | - | chr2.2:53794052-53794071 | MS.gene071839:intron | 40.0% | |
AATGCCACATGTGCAAAACT+TGG | - | chr2.2:53793716-53793735 | MS.gene071839:intron | 40.0% | |
ACCAAGTGAAGAGGAAATCA+AGG | - | chr2.2:53794868-53794887 | MS.gene071839:CDS | 40.0% | |
ACGAATCAATTATGTGCAGG+TGG | - | chr2.2:53794650-53794669 | MS.gene071839:intron | 40.0% | |
AGACCGAGTCAAAATTGGTT+TGG | - | chr2.2:53793685-53793704 | MS.gene071839:intron | 40.0% | |
ATGCCACATGTGCAAAACTT+GGG | - | chr2.2:53793717-53793736 | MS.gene071839:intron | 40.0% | |
CCAAGTGAAGAGGAAATCAA+GGG | - | chr2.2:53794869-53794888 | MS.gene071839:CDS | 40.0% | |
CTGTCTCTATTTCAGAGAGA+TGG | + | chr2.2:53793396-53793415 | None:intergenic | 40.0% | |
GAAACCACTTGTGTACCATT+GGG | + | chr2.2:53794042-53794061 | None:intergenic | 40.0% | |
GAAGACTAACCCTACCAATT+TGG | - | chr2.2:53793855-53793874 | MS.gene071839:intron | 40.0% | |
GACATCCACTTGGTTCAATT+AGG | + | chr2.2:53794609-53794628 | None:intergenic | 40.0% | |
GCAACTTTGTGAAAGTTAGG+AGG | + | chr2.2:53793530-53793549 | None:intergenic | 40.0% | |
GCTTACAACTACAGCATAGT+TGG | - | chr2.2:53794725-53794744 | MS.gene071839:intron | 40.0% | |
GTATCTCAATGGTACACAAG+TGG | + | chr2.2:53793891-53793910 | None:intergenic | 40.0% | |
GTGCAACATATCACTTCACA+TGG | - | chr2.2:53793941-53793960 | MS.gene071839:intron | 40.0% | |
TACAACTACAGCATAGTTGG+AGG | - | chr2.2:53794728-53794747 | MS.gene071839:intron | 40.0% | |
TGGATGGCATCAATAACCTT+TGG | + | chr2.2:53793051-53793070 | None:intergenic | 40.0% | |
TGTTGAGAGTAATCTCATCG+TGG | + | chr2.2:53794151-53794170 | None:intergenic | 40.0% | |
! | AGAGCTTTGTAAAGTCTAGC+AGG | + | chr2.2:53793003-53793022 | None:intergenic | 40.0% |
! | GACCGAGTCAAAATTGGTTT+GGG | - | chr2.2:53793686-53793705 | MS.gene071839:intron | 40.0% |
!! | ACCGAGTCAAAATTGGTTTG+GGG | - | chr2.2:53793687-53793706 | MS.gene071839:intron | 40.0% |
!! | TAACATGATGGACATCCACT+TGG | + | chr2.2:53794619-53794638 | None:intergenic | 40.0% |
!! | TAGAGGTGATGGTCTTTTCA+AGG | - | chr2.2:53794901-53794920 | MS.gene071839:CDS | 40.0% |
!!! | TCCCCAAACCAATTTTGACT+CGG | + | chr2.2:53793691-53793710 | None:intergenic | 40.0% |
AACTACAGCATAGTTGGAGG+TGG | - | chr2.2:53794731-53794750 | MS.gene071839:intron | 45.0% | |
AGCAGGAGCTACAATAGATG+TGG | + | chr2.2:53792986-53793005 | None:intergenic | 45.0% | |
AGCGTAGACCGAGTCAAAAT+TGG | - | chr2.2:53793680-53793699 | MS.gene071839:intron | 45.0% | |
AGTGAAGAGGAAATCAAGGG+TGG | - | chr2.2:53794872-53794891 | MS.gene071839:CDS | 45.0% | |
CCCTTGATTTCCTCTTCACT+TGG | + | chr2.2:53794872-53794891 | None:intergenic | 45.0% | |
GAAATCGTTGAAGGAAACGG+TGG | - | chr2.2:53793078-53793097 | MS.gene071839:CDS | 45.0% | |
GGAAACCACTTGTGTACCAT+TGG | + | chr2.2:53794043-53794062 | None:intergenic | 45.0% | |
GTATCCCAATGGTACACAAG+TGG | - | chr2.2:53794035-53794054 | MS.gene071839:intron | 45.0% | |
TGCCACATGTGCAAAACTTG+GGG | - | chr2.2:53793718-53793737 | MS.gene071839:intron | 45.0% | |
TTTGCAATGGATCCTCCATC+TGG | + | chr2.2:53794812-53794831 | None:intergenic | 45.0% | |
! | GGCTCTTGAAGGTTACGTTT+TGG | - | chr2.2:53794922-53794941 | MS.gene071839:CDS | 45.0% |
!! | GGTCTTTTCAAGGCTCTTGA+AGG | - | chr2.2:53794911-53794930 | MS.gene071839:CDS | 45.0% |
!!! | CTTTTATTATATATTAATAT+TGG | - | chr2.2:53794487-53794506 | MS.gene071839:intron | 5.0% |
AAATTGTCTGCAGGGCCAGA+TGG | - | chr2.2:53794794-53794813 | MS.gene071839:CDS | 50.0% | |
AACACGTGGCACCTCACTTA+GGG | - | chr2.2:53793648-53793667 | MS.gene071839:intron | 50.0% | |
ATCAAGGGTGGCAAAGCTAG+AGG | - | chr2.2:53794884-53794903 | MS.gene071839:CDS | 50.0% | |
CATGTGCAAAACTTGGGGAG+CGG | - | chr2.2:53793723-53793742 | MS.gene071839:intron | 50.0% | |
GAGATCTTCTCCACTGTGTC+TGG | + | chr2.2:53794764-53794783 | None:intergenic | 50.0% | |
TAACACGTGGCACCTCACTT+AGG | - | chr2.2:53793647-53793666 | MS.gene071839:intron | 50.0% | |
TACAGCATAGTTGGAGGTGG+TGG | - | chr2.2:53794734-53794753 | MS.gene071839:intron | 50.0% | |
TGATGCTGCACCAAGTGAAG+AGG | - | chr2.2:53794859-53794878 | MS.gene071839:CDS | 50.0% | |
! | CTCCCCAAGTTTTGCACATG+TGG | + | chr2.2:53793723-53793742 | None:intergenic | 50.0% |
!! | ACTTGGTGCAGCATCACCTT+TGG | + | chr2.2:53794855-53794874 | None:intergenic | 50.0% |
!! | TAGCAGTATTGGCCCCACAA+GGG | - | chr2.2:53793607-53793626 | MS.gene071839:intron | 50.0% |
!! | TTAGCAGTATTGGCCCCACA+AGG | - | chr2.2:53793606-53793625 | MS.gene071839:intron | 50.0% |
GGTGGCAAAGCTAGAGGTGA+TGG | - | chr2.2:53794890-53794909 | MS.gene071839:CDS | 55.0% | |
!! | TGGTGGACTTCCAGACACAG+TGG | - | chr2.2:53794751-53794770 | MS.gene071839:intron | 55.0% |
CTGACGTGGCACCCTAAGTG+AGG | + | chr2.2:53793662-53793681 | None:intergenic | 60.0% | |
GTTGAAGGAAACGGTGGCGC+CGG | - | chr2.2:53793084-53793103 | MS.gene071839:CDS | 60.0% | |
TTGTCTGCAGGGCCAGATGG+AGG | - | chr2.2:53794797-53794816 | MS.gene071839:CDS | 60.0% | |
!! | TGACTCGGTCTACGCTGACG+TGG | + | chr2.2:53793676-53793695 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 53792955 | 53794961 | 53792955 | ID=MS.gene071839 |
chr2.2 | mRNA | 53792955 | 53794961 | 53792955 | ID=MS.gene071839.t1;Parent=MS.gene071839 |
chr2.2 | exon | 53794781 | 53794961 | 53794781 | ID=MS.gene071839.t1.exon1;Parent=MS.gene071839.t1 |
chr2.2 | CDS | 53794781 | 53794961 | 53794781 | ID=cds.MS.gene071839.t1;Parent=MS.gene071839.t1 |
chr2.2 | exon | 53792955 | 53793247 | 53792955 | ID=MS.gene071839.t1.exon2;Parent=MS.gene071839.t1 |
chr2.2 | CDS | 53792955 | 53793247 | 53792955 | ID=cds.MS.gene071839.t1;Parent=MS.gene071839.t1 |
Gene Sequence |
Protein sequence |