AlfalfaGEDB | MS.gene059037

M. sativa cultivar XinJiangDaYe / MS.gene059037

KEGG: -
GO: GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0006950 GO:0006952 GO:0007165 GO:0008150 GO:0008289 GO:0009738 GO:0009755 GO:0009987 GO:0010427 GO:0019208 GO:0019212 GO:0019840 GO:0019888 GO:0030234 GO:0031406 GO:0033293 GO:0036094 GO:0038023 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0050789 GO:0050794 GO:0050896 GO:0060089 GO:0065007 GO:0098772
PFAM: PF00407.22

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059037.t1	XP_003594829.1	100	157	0	0	1	157	1	157	2.40E-82	314.7

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059037.t1	P93333	100.0	157	0	0	1	157	1	157	5.9e-85	314.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059037.t1	A0A396J749	100.0	157	0	0	1	157	1	157	1.8e-82	314.7

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049611	MS.gene059037	0.814172	1.76E-51	-1.69E-46
MS.gene049634	MS.gene059037	0.813909	2.02E-51	-1.69E-46
MS.gene050095	MS.gene059037	0.801469	8.87E-49	-1.69E-46
MS.gene050216	MS.gene059037	-0.823241	1.54E-53	-1.69E-46
MS.gene050380	MS.gene059037	0.857004	2.19E-62	-1.69E-46
MS.gene050381	MS.gene059037	0.853259	2.69E-61	-1.69E-46
MS.gene050809	MS.gene059037	0.813285	2.77E-51	-1.69E-46
MS.gene050868	MS.gene059037	-0.809809	1.57E-50	-1.69E-46
MS.gene050871	MS.gene059037	-0.815342	9.71E-52	-1.69E-46
MS.gene05104	MS.gene059037	0.823176	1.60E-53	-1.69E-46

Showing 1 to 10 of 357 entries

Previous1 2 3 4 5…36Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059037.t1	MTR_2g035100	100.000	157	0	1	157	1	157	3.24e-110	310
MS.gene059037.t1	MTR_2g035105	98.726	157	2	1	157	1	157	9.40e-109	306
MS.gene059037.t1	MTR_2g035130	87.898	157	19	1	157	1	157	1.75e-96	275
MS.gene059037.t1	MTR_2g035150	85.350	157	23	1	157	1	157	3.70e-94	270
MS.gene059037.t1	MTR_2g035120	84.076	157	25	1	157	1	157	6.07e-94	269
MS.gene059037.t1	MTR_6g033450	71.975	157	44	1	157	1	157	8.33e-80	233
MS.gene059037.t1	MTR_4g120970	71.975	157	44	1	157	1	157	8.33e-80	233
MS.gene059037.t1	MTR_2g035320	65.605	157	54	1	157	1	157	2.34e-69	207
MS.gene059037.t1	MTR_2g035190	61.783	157	60	1	157	1	157	5.22e-66	198
MS.gene059037.t1	MTR_2g035210	61.146	157	61	1	157	1	157	8.15e-65	195

Showing 1 to 10 of 18 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 41 sgRNAs with CRISPR-Local

Find 51 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTATGATTTGCACAAAG+TGG	0.527363	2.4:-56077168	MS.gene059037:CDS
AAATTAAGGGTGGCAAAGCT+AGG	0.456128	2.4:-56076965	MS.gene059037:CDS
AAATTGTCTGCAGGGCCAGA+TGG	0.558648	2.4:-56077053	MS.gene059037:CDS
AACAATTTCAATACTTTGGA+TGG	0.439896	2.4:+56077525	None:intergenic
AACGAAAGTAAGTTTCTTGA+TGG	0.287513	2.4:+56077480	None:intergenic
AACTACAGCATAGTTGGTGG+TGG	0.623337	2.4:-56077116	MS.gene059037:CDS
AAGAAACTTACTTTCGTTGA+AGG	0.370871	2.4:-56077475	MS.gene059037:intron
AATTAAGGGTGGCAAAGCTA+GGG	0.501100	2.4:-56076964	MS.gene059037:CDS
ACCAAGTGAAGAGGAAATTA+AGG	0.303784	2.4:-56076979	MS.gene059037:CDS
ACTGTGAAATACTTCACAAA+AGG	0.498744	2.4:-56077011	MS.gene059037:CDS

Showing 1 to 10 of 41 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACGAAAGTAAGTTTCTTGA+TGG	+	chr2.4:56077065-56077084	None:intergenic	30.0%
AAGAAACTTACTTTCGTTGA+AGG	-	chr2.4:56077067-56077086	MS.gene059037:CDS	30.0%
ACTGTGAAATACTTCACAAA+AGG	-	chr2.4:56077531-56077550	MS.gene059037:CDS	30.0%
TTCTGATAACCTTATTCCAA+AGG	-	chr2.4:56076985-56077004	MS.gene059037:CDS	30.0%
ACCAAGTGAAGAGGAAATTA+AGG	-	chr2.4:56077563-56077582	MS.gene059037:CDS	35.0%
ATGTGAAAAATTGAAGTGGC+AGG	-	chr2.4:56077101-56077120	MS.gene059037:CDS	35.0%
CCAAGTGAAGAGGAAATTAA+GGG	-	chr2.4:56077564-56077583	MS.gene059037:CDS	35.0%
GAAACGAATCAATTATGTGC+AGG	-	chr2.4:56077342-56077361	MS.gene059037:intron	35.0%
TGCAGACAATTTAGACTCAA+AGG	+	chr2.4:56077481-56077500	None:intergenic	35.0%
TTGAGTCTAAATTGTCTGCA+GGG	-	chr2.4:56077481-56077500	MS.gene059037:CDS	35.0%

Showing 1 to 10 of 51 entries

Previous1 2 3 4 5 6Next

Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	56076908	56077656	56076908	ID=MS.gene059037
chr2.4	mRNA	56076908	56077656	56076908	ID=MS.gene059037.t1;Parent=MS.gene059037
chr2.4	exon	56077476	56077656	56077476	ID=MS.gene059037.t1.exon1;Parent=MS.gene059037.t1
chr2.4	CDS	56077476	56077656	56077476	ID=cds.MS.gene059037.t1;Parent=MS.gene059037.t1
chr2.4	exon	56076908	56077200	56076908	ID=MS.gene059037.t1.exon2;Parent=MS.gene059037.t1
chr2.4	CDS	56076908	56077200	56076908	ID=cds.MS.gene059037.t1;Parent=MS.gene059037.t1

Gene Sequence

>MS.gene059037

ATGGGTGTATTCAACTTTGAGGATGAGACCACATCTATTGTAGCTCCTGCTAGACTTTACAAAGCTCTAGTTACAGATTCTGATAACCTTATTCCAAAGGTTATTGATGCCATCCAAAGTATTGAAATTGTTGAAGGAAACGGTGGTGCCGGAACCATCAAGAAACTTACTTTCGTTGAAGGTTAGTATATATATGTGAAAAATTGAAGTGGCAGGAAACTTTTTTTAACCATCAAATGTTTGATTCTTGTTGATTGTGAAGTGCATATCCTCTTTTCTTTTATTATATATTGGATTATTTGTTACTATGTTTGTTATATAATATTTTTTTATGAGAAACAATAGTATTTTTAATTTTTTTTTTTAATAGCTTCTTATACAAATTATTAATAACCTAGTTGAACCAAGTGAATGTCCATCATGTTAGTAATTGTGAAACGAATCAATTATGTGCAGGTGGTGAAACAAAGTATGATTTGCACAAAGTGGACTTAGTAGATGATGTTAACTTCGCTTACAACTACAGCATAGTTGGTGGTGGTGGACTTCCAGACACAGTGGAGAAGATCTCCTTTGAGTCTAAATTGTCTGCAGGGCCAGATGGAGGATCCATTGCAAAGCTTACTGTGAAATACTTCACAAAAGGTGATGCTGCACCAAGTGAAGAGGAAATTAAGGGTGGCAAAGCTAGGGGTGATGGTCTTTTCAAGGCTCTTGAAGGTTACGTTTTGGCAAATCCTGATTACTAA

Protein sequence

>MS.gene059037.t1

MGVFNFEDETTSIVAPARLYKALVTDSDNLIPKVIDAIQSIEIVEGNGGAGTIKKLTFVEGGETKYDLHKVDLVDDVNFAYNYSIVGGGGLPDTVEKISFESKLSAGPDGGSIAKLTVKYFTKGDAAPSEEEIKGGKARGDGLFKALEGYVLANPDY