Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07205.t1 | XP_003591549.2 | 97.8 | 183 | 4 | 0 | 1 | 183 | 1 | 183 | 5.90E-96 | 360.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07205.t1 | P0C8Z0 | 68.6 | 121 | 38 | 0 | 1 | 121 | 1 | 121 | 1.4e-45 | 184.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07205.t1 | G7IF81 | 97.8 | 183 | 4 | 0 | 1 | 183 | 1 | 183 | 4.2e-96 | 360.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050905 | MS.gene07205 | -0.80507 | 1.59E-49 | -1.69E-46 |
| MS.gene053080 | MS.gene07205 | 0.819843 | 9.39E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene07205 | 0.818002 | 2.46E-52 | -1.69E-46 |
| MS.gene05548 | MS.gene07205 | 0.801743 | 7.80E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene07205 | 0.800204 | 1.61E-48 | -1.69E-46 |
| MS.gene057693 | MS.gene07205 | 0.820347 | 7.20E-53 | -1.69E-46 |
| MS.gene05954 | MS.gene07205 | 0.821696 | 3.52E-53 | -1.69E-46 |
| MS.gene059842 | MS.gene07205 | 0.807448 | 5.03E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07205.t1 | MTR_1g088700 | 97.814 | 183 | 4 | 0 | 1 | 183 | 1 | 183 | 1.20e-130 | 363 |
| MS.gene07205.t1 | MTR_7g108860 | 77.778 | 108 | 24 | 0 | 1 | 108 | 1 | 108 | 1.20e-59 | 185 |
| MS.gene07205.t1 | MTR_7g108860 | 77.778 | 108 | 24 | 0 | 1 | 108 | 1 | 108 | 2.58e-59 | 185 |
| MS.gene07205.t1 | MTR_8g058597 | 77.778 | 108 | 24 | 0 | 1 | 108 | 1 | 108 | 2.58e-59 | 185 |
| MS.gene07205.t1 | MTR_7g108860 | 77.778 | 108 | 24 | 0 | 1 | 108 | 1 | 108 | 3.98e-59 | 184 |
| MS.gene07205.t1 | MTR_7g108860 | 77.358 | 106 | 24 | 0 | 3 | 108 | 11 | 116 | 1.56e-57 | 181 |
| MS.gene07205.t1 | MTR_6g034550 | 48.148 | 135 | 65 | 1 | 1 | 130 | 1 | 135 | 1.57e-40 | 135 |
| MS.gene07205.t1 | MTR_6g027770 | 49.541 | 109 | 54 | 1 | 1 | 109 | 1 | 108 | 3.13e-34 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07205.t1 | AT4G02450 | 62.400 | 125 | 44 | 2 | 1 | 123 | 1 | 124 | 3.36e-53 | 170 |
| MS.gene07205.t1 | AT4G02450 | 62.400 | 125 | 44 | 2 | 1 | 123 | 1 | 124 | 3.46e-53 | 170 |
| MS.gene07205.t1 | AT3G03773 | 48.252 | 143 | 68 | 4 | 1 | 143 | 1 | 137 | 3.86e-38 | 128 |
| MS.gene07205.t1 | AT3G03773 | 52.586 | 116 | 53 | 2 | 1 | 116 | 1 | 114 | 5.63e-38 | 127 |
| MS.gene07205.t1 | AT3G03773 | 47.552 | 143 | 69 | 4 | 1 | 143 | 55 | 191 | 2.88e-36 | 125 |
Find 58 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAGTTGATTGGGATAAA+TGG | 0.226101 | 1.4:+70407627 | MS.gene07205:CDS |
| CACATTATGTGAAAGTTGAT+TGG | 0.336982 | 1.4:+70407618 | MS.gene07205:CDS |
| CTATGTCACGATTCAGTTGC+CGG | 0.340941 | 1.4:+70407073 | MS.gene07205:CDS |
| ATGTGCTTGAAGCAGCTTCC+TGG | 0.366179 | 1.4:-70409022 | None:intergenic |
| GGACGGTGCTCTTGCCAGCT+TGG | 0.394866 | 1.4:-70409001 | None:intergenic |
| AGGTCTCGGTGACCTGGACT+TGG | 0.409814 | 1.4:+70407765 | MS.gene07205:intron |
| CTTGGGAGGGATGGATTTCT+CGG | 0.410768 | 1.4:+70407783 | MS.gene07205:CDS |
| ACATTATGTGAAAGTTGATT+GGG | 0.435304 | 1.4:+70407619 | MS.gene07205:CDS |
| CTTTGAGCCCACTTGACCTC+CGG | 0.445693 | 1.4:-70407038 | None:intergenic |
| AGCTGGCAAGAGCACCGTCC+AGG | 0.453170 | 1.4:+70409004 | MS.gene07205:CDS |
| CATATTCTGTGTAGTGCAAA+AGG | 0.457512 | 1.4:+70407547 | MS.gene07205:CDS |
| TCAAAACACCGTCTGGAGTA+AGG | 0.459550 | 1.4:-70407118 | None:intergenic |
| TTTATTAGGTCTCGGTGACC+TGG | 0.461080 | 1.4:+70407759 | MS.gene07205:intron |
| GAAAGTTGATTGGGATAAAT+GGG | 0.470728 | 1.4:+70407628 | MS.gene07205:CDS |
| GCTTGAATGCAGTCGTCATC+CGG | 0.473159 | 1.4:+70407019 | MS.gene07205:intron |
| GTCGTCATCCGGAGGTCAAG+TGG | 0.482409 | 1.4:+70407030 | MS.gene07205:intron |
| CCTTGTCGAAGAGTGGCAAC+TGG | 0.486019 | 1.4:-70407184 | None:intergenic |
| TGACCTGGACTTGGGAGGGA+TGG | 0.491935 | 1.4:+70407774 | MS.gene07205:CDS |
| GGAGGTCAAGTGGGCTCAAA+GGG | 0.493027 | 1.4:+70407040 | MS.gene07205:CDS |
| TGCAAAAGGCAGAGGATGAA+TGG | 0.496195 | 1.4:+70407561 | MS.gene07205:CDS |
| ACAAGAGGGTAATGATAATG+AGG | 0.504951 | 1.4:+70408959 | MS.gene07205:CDS |
| GCCAGCTTGGTCTCCAACCG+TGG | 0.507840 | 1.4:-70408988 | None:intergenic |
| CAGAGGATGAATGGTGGAAA+AGG | 0.507991 | 1.4:+70407570 | MS.gene07205:CDS |
| AATCCATCCCTCCCAAGTCC+AGG | 0.516889 | 1.4:-70407777 | None:intergenic |
| CTCGGTGACCTGGACTTGGG+AGG | 0.517191 | 1.4:+70407769 | MS.gene07205:CDS |
| CAATCAACTTTCACATAATG+TGG | 0.527025 | 1.4:-70407617 | None:intergenic |
| TTTGACGACGGTGATGATGA+AGG | 0.527145 | 1.4:+70407922 | MS.gene07205:CDS |
| CGGAGGTCAAGTGGGCTCAA+AGG | 0.538850 | 1.4:+70407039 | MS.gene07205:CDS |
| TCGGTGACCTGGACTTGGGA+GGG | 0.538949 | 1.4:+70407770 | MS.gene07205:CDS |
| AATGAGGGAGGTTCCACGGT+TGG | 0.540422 | 1.4:+70408975 | MS.gene07205:CDS |
| TCCACGGTTGGAGACCAAGC+TGG | 0.546944 | 1.4:+70408987 | MS.gene07205:CDS |
| CTGTGTAGTGCAAAAGGCAG+AGG | 0.555658 | 1.4:+70407553 | MS.gene07205:CDS |
| TTTGTGCTGCAGCAATTTGA+GGG | 0.567193 | 1.4:+70407877 | MS.gene07205:intron |
| GGGTGATGATGCAGTGGGTG+CGG | 0.586506 | 1.4:+70407897 | MS.gene07205:CDS |
| GGTCTCGGTGACCTGGACTT+GGG | 0.589648 | 1.4:+70407766 | MS.gene07205:intron |
| AAAAGGTTACTGAAAGCAGA+AGG | 0.595204 | 1.4:+70407587 | MS.gene07205:CDS |
| TGATAATGAGGGAGGTTCCA+CGG | 0.595705 | 1.4:+70408971 | MS.gene07205:CDS |
| TCGTCATCCGGAGGTCAAGT+GGG | 0.596383 | 1.4:+70407031 | MS.gene07205:CDS |
| CAAGAGGGTAATGATAATGA+GGG | 0.603330 | 1.4:+70408960 | MS.gene07205:CDS |
| CTTCGACAAGGTTAATGTAG+AGG | 0.606463 | 1.4:+70407196 | MS.gene07205:CDS |
| ACATTAACCTTGTCGAAGAG+TGG | 0.607273 | 1.4:-70407191 | None:intergenic |
| GTGGATGAAGATGAAGATGC+GGG | 0.610763 | 1.4:+70407650 | MS.gene07205:CDS |
| CCAGTTGCCACTCTTCGACA+AGG | 0.617754 | 1.4:+70407184 | MS.gene07205:CDS |
| GTGGCAACTGGAGCTCATAG+AGG | 0.620616 | 1.4:-70407172 | None:intergenic |
| GTGGTCTTCAGCACCAGCAG+TGG | 0.621573 | 1.4:-70407150 | None:intergenic |
| CAGGAGAGCAAAATTAACGT+AGG | 0.633027 | 1.4:+70407515 | MS.gene07205:intron |
| TCAACTTTCACATAATGTGG+AGG | 0.635270 | 1.4:-70407614 | None:intergenic |
| GCTTGAAGCAGCTTCCTGGA+CGG | 0.652191 | 1.4:-70409018 | None:intergenic |
| AAAGTGAACCTTACTCCAGA+CGG | 0.655853 | 1.4:+70407110 | MS.gene07205:CDS |
| GCAACTGGAGCTCATAGAGG+TGG | 0.662772 | 1.4:-70407169 | None:intergenic |
| GGTGGATGAAGATGAAGATG+CGG | 0.663693 | 1.4:+70407649 | MS.gene07205:CDS |
| ATTTGAGGGTGATGATGCAG+TGG | 0.664488 | 1.4:+70407891 | MS.gene07205:CDS |
| AAAGGTTACTGAAAGCAGAA+GGG | 0.668010 | 1.4:+70407588 | MS.gene07205:CDS |
| TGAATGCAGTCGTCATCCGG+AGG | 0.670112 | 1.4:+70407022 | MS.gene07205:intron |
| AGTTGATTGGGATAAATGGG+TGG | 0.672477 | 1.4:+70407631 | MS.gene07205:CDS |
| GAGGGTAATGATAATGAGGG+AGG | 0.683148 | 1.4:+70408963 | MS.gene07205:CDS |
| TTTGAGGGTGATGATGCAGT+GGG | 0.686057 | 1.4:+70407892 | MS.gene07205:CDS |
| AAAAGGCAGAGGATGAATGG+TGG | 0.737688 | 1.4:+70407564 | MS.gene07205:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTTGTTAAATTTATTT+TGG | + | chr1.4:70406761-70406780 | MS.gene07205:intron | 10.0% |
| !!! | TTCATTTTTATGTTAAAATT+AGG | + | chr1.4:70406905-70406924 | MS.gene07205:intron | 10.0% |
| !! | AATTTAACAAAAATGTTTCA+TGG | - | chr1.4:70406756-70406775 | None:intergenic | 15.0% |
| !! | TTTCTTTAATCTTAAACAAA+CGG | + | chr1.4:70408675-70408694 | MS.gene07205:intron | 15.0% |
| !! | AATTGTAACTATCAAGAATT+GGG | + | chr1.4:70406442-70406461 | MS.gene07205:intron | 20.0% |
| !! | ACAGTTTATGATAAAAGATT+TGG | + | chr1.4:70406959-70406978 | MS.gene07205:intron | 20.0% |
| !! | CCAACAAGAATAAATTAATA+CGG | - | chr1.4:70408214-70408233 | None:intergenic | 20.0% |
| !! | TAAAAATACCCTTTATAACT+TGG | - | chr1.4:70407715-70407734 | None:intergenic | 20.0% |
| !! | TAGATGGTTAATTCAATTTA+TGG | + | chr1.4:70406579-70406598 | MS.gene07205:intron | 20.0% |
| !! | TGTGAATAGTTTAATTGAAA+TGG | + | chr1.4:70406391-70406410 | MS.gene07205:intron | 20.0% |
| !! | TTAGAATGAATATGAAACTA+AGG | - | chr1.4:70407355-70407374 | None:intergenic | 20.0% |
| !!! | ATATCTAATGGTTTACTTTT+AGG | + | chr1.4:70408174-70408193 | MS.gene07205:intron | 20.0% |
| !!! | TAGTTTTTCCAAGTTATAAA+GGG | + | chr1.4:70407704-70407723 | MS.gene07205:intron | 20.0% |
| !!! | TATCTAATGGTTTACTTTTA+GGG | + | chr1.4:70408175-70408194 | MS.gene07205:intron | 20.0% |
| !!! | TGTAACTAATTTTCTTGTTA+AGG | + | chr1.4:70407388-70407407 | MS.gene07205:intron | 20.0% |
| !!! | TTAGTTTTTCCAAGTTATAA+AGG | + | chr1.4:70407703-70407722 | MS.gene07205:intron | 20.0% |
| !!! | TTTATGATAAAAGATTTGGT+GGG | + | chr1.4:70406963-70406982 | MS.gene07205:intron | 20.0% |
| !!! | TTTTATGTTAAAATTAGGCA+TGG | + | chr1.4:70406910-70406929 | MS.gene07205:intron | 20.0% |
| ! | AATAACTTAATCAGTTTCAC+TGG | - | chr1.4:70408383-70408402 | None:intergenic | 25.0% |
| ! | ACACTGAAAATTGTGAAATT+GGG | - | chr1.4:70406645-70406664 | None:intergenic | 25.0% |
| ! | ATATGACAATTAAGTTCCTT+AGG | - | chr1.4:70408878-70408897 | None:intergenic | 25.0% |
| ! | ATGAATTGAATGAGAATTGA+TGG | + | chr1.4:70406832-70406851 | MS.gene07205:intron | 25.0% |
| ! | ATTGTAACTATCAAGAATTG+GGG | + | chr1.4:70406443-70406462 | MS.gene07205:intron | 25.0% |
| ! | CAATTAAACTATTCACAGTT+AGG | - | chr1.4:70406388-70406407 | None:intergenic | 25.0% |
| ! | CCGTATTAATTTATTCTTGT+TGG | + | chr1.4:70408211-70408230 | MS.gene07205:intron | 25.0% |
| ! | GAAAATTGAAATTGACTGTA+GGG | + | chr1.4:70408285-70408304 | MS.gene07205:intron | 25.0% |
| ! | GAACTTAATTGTCATATTGT+TGG | + | chr1.4:70408881-70408900 | MS.gene07205:intron | 25.0% |
| ! | GAATTGTAACTATCAAGAAT+TGG | + | chr1.4:70406441-70406460 | MS.gene07205:intron | 25.0% |
| ! | GAGAAAACATTTCTAATTCA+TGG | + | chr1.4:70407220-70407239 | MS.gene07205:intron | 25.0% |
| ! | GTTTATGATAAAAGATTTGG+TGG | + | chr1.4:70406962-70406981 | MS.gene07205:intron | 25.0% |
| ! | TACTTGACTATTATAAAGCA+TGG | + | chr1.4:70407998-70408017 | MS.gene07205:intron | 25.0% |
| ! | TCTCATTCAATTCATGTAAA+GGG | - | chr1.4:70406827-70406846 | None:intergenic | 25.0% |
| ! | TTCTCATTCAATTCATGTAA+AGG | - | chr1.4:70406828-70406847 | None:intergenic | 25.0% |
| ! | TTGCATTTGTAGATTACATT+GGG | + | chr1.4:70408056-70408075 | MS.gene07205:intron | 25.0% |
| !! | ACATTATGTGAAAGTTGATT+GGG | + | chr1.4:70407619-70407638 | MS.gene07205:CDS | 25.0% |
| !! | TTTTCCAATGAGTTAAATCA+TGG | + | chr1.4:70407285-70407304 | MS.gene07205:intron | 25.0% |
| !!! | ATCTAATGGTTTACTTTTAG+GGG | + | chr1.4:70408176-70408195 | MS.gene07205:intron | 25.0% |
| !!! | ATTTTCTAGTGTCTATTCAA+AGG | + | chr1.4:70406799-70406818 | MS.gene07205:intron | 25.0% |
| !!! | GGAATGTCAATTTTAACTTT+TGG | - | chr1.4:70408824-70408843 | None:intergenic | 25.0% |
| !!! | TATTTTAAACGTGATTAACC+AGG | - | chr1.4:70406538-70406557 | None:intergenic | 25.0% |
| !!! | TTAGGTGTTTTTGTTTCATA+TGG | + | chr1.4:70406305-70406324 | MS.gene07205:intron | 25.0% |
| AATGCCATGATTTAACTCAT+TGG | - | chr1.4:70407292-70407311 | None:intergenic | 30.0% | |
| AATTAGTTCAGTTGAGTAGA+TGG | + | chr1.4:70406563-70406582 | MS.gene07205:intron | 30.0% | |
| ACTATGATCAAGATCAGATT+TGG | - | chr1.4:70408618-70408637 | None:intergenic | 30.0% | |
| ACTATTCACAGTTAGGATTT+AGG | - | chr1.4:70406381-70406400 | None:intergenic | 30.0% | |
| ATGTTAAAATTAGGCATGGT+GGG | + | chr1.4:70406914-70406933 | MS.gene07205:intron | 30.0% | |
| ATTGTCTGTTTATTAGGTCT+CGG | + | chr1.4:70407751-70407770 | MS.gene07205:intron | 30.0% | |
| CAAACAACATTACTAAGAGA+AGG | - | chr1.4:70407845-70407864 | None:intergenic | 30.0% | |
| CAACTGATTGTCTGTTTATT+AGG | + | chr1.4:70407745-70407764 | MS.gene07205:intron | 30.0% | |
| CAAGCATTAGAAAATCAGAT+AGG | - | chr1.4:70407004-70407023 | None:intergenic | 30.0% | |
| CAATCAACTTTCACATAATG+TGG | - | chr1.4:70407620-70407639 | None:intergenic | 30.0% | |
| CACACTGAAAATTGTGAAAT+TGG | - | chr1.4:70406646-70406665 | None:intergenic | 30.0% | |
| CACTGAAAATTGTGAAATTG+GGG | - | chr1.4:70406644-70406663 | None:intergenic | 30.0% | |
| CTATTATAAAGCATGGTTGA+CGG | + | chr1.4:70408005-70408024 | MS.gene07205:intron | 30.0% | |
| CTGCAGCACAAAAATTAATT+AGG | - | chr1.4:70407869-70407888 | None:intergenic | 30.0% | |
| CTTGCATTTGTAGATTACAT+TGG | + | chr1.4:70408055-70408074 | MS.gene07205:intron | 30.0% | |
| GGAAAATTGAAATTGACTGT+AGG | + | chr1.4:70408284-70408303 | MS.gene07205:intron | 30.0% | |
| GTTAATTGCATGCATAATTG+TGG | - | chr1.4:70406701-70406720 | None:intergenic | 30.0% | |
| TAATACATGCATGCACTTAT+GGG | + | chr1.4:70407315-70407334 | MS.gene07205:intron | 30.0% | |
| TATGTTAAAATTAGGCATGG+TGG | + | chr1.4:70406913-70406932 | MS.gene07205:intron | 30.0% | |
| TCAAAACCTGAAAAACAAGA+GGG | + | chr1.4:70408945-70408964 | MS.gene07205:CDS | 30.0% | |
| TTAAAGCTATTCTATCACTC+AGG | - | chr1.4:70408586-70408605 | None:intergenic | 30.0% | |
| TTCTAATTCATGGATAGCAT+TGG | + | chr1.4:70407230-70407249 | MS.gene07205:intron | 30.0% | |
| TTGTAACTATCAAGAATTGG+GGG | + | chr1.4:70406444-70406463 | MS.gene07205:intron | 30.0% | |
| ! | ACTGCTATTTAAGATACTCT+TGG | + | chr1.4:70408085-70408104 | MS.gene07205:intron | 30.0% |
| ! | CACATTATGTGAAAGTTGAT+TGG | + | chr1.4:70407618-70407637 | MS.gene07205:CDS | 30.0% |
| ! | CTGAAAAATTGTAAAAGTGC+AGG | - | chr1.4:70406224-70406243 | None:intergenic | 30.0% |
| ! | CTGCTATTTAAGATACTCTT+GGG | + | chr1.4:70408086-70408105 | MS.gene07205:intron | 30.0% |
| ! | GAAAGTTGATTGGGATAAAT+GGG | + | chr1.4:70407628-70407647 | MS.gene07205:CDS | 30.0% |
| ! | TGAAAGTTGATTGGGATAAA+TGG | + | chr1.4:70407627-70407646 | MS.gene07205:CDS | 30.0% |
| !! | AAGGTTCACTTTTGCATTTT+TGG | - | chr1.4:70407102-70407121 | None:intergenic | 30.0% |
| !! | ATGTTTTAGGCTAAAGTTTG+TGG | + | chr1.4:70408313-70408332 | MS.gene07205:intron | 30.0% |
| !! | GTGATAGAATAGCTTTAAAC+TGG | + | chr1.4:70408588-70408607 | MS.gene07205:intron | 30.0% |
| !! | TTTCATTTCAGTTGATGAGA+TGG | + | chr1.4:70408245-70408264 | MS.gene07205:intron | 30.0% |
| !!! | ACTTTTGCATTTTTGGAATC+CGG | - | chr1.4:70407095-70407114 | None:intergenic | 30.0% |
| AAAAGGTTACTGAAAGCAGA+AGG | + | chr1.4:70407587-70407606 | MS.gene07205:CDS | 35.0% | |
| AAACGGTAATAGATGGTGAA+GGG | - | chr1.4:70408702-70408721 | None:intergenic | 35.0% | |
| AAAGGTTACTGAAAGCAGAA+GGG | + | chr1.4:70407588-70407607 | MS.gene07205:CDS | 35.0% | |
| AGTCGTAAGAGTCACTTAAA+CGG | - | chr1.4:70408719-70408738 | None:intergenic | 35.0% | |
| ATGATCAAGATCAGATTTGG+TGG | - | chr1.4:70408615-70408634 | None:intergenic | 35.0% | |
| CATATTCTGTGTAGTGCAAA+AGG | + | chr1.4:70407547-70407566 | MS.gene07205:CDS | 35.0% | |
| CATTTGTAGATTACATTGGG+TGG | + | chr1.4:70408059-70408078 | MS.gene07205:intron | 35.0% | |
| CTAATACATGCATGCACTTA+TGG | + | chr1.4:70407314-70407333 | MS.gene07205:intron | 35.0% | |
| GGAAAACTTTCATCTTGCAT+TGG | + | chr1.4:70408107-70408126 | MS.gene07205:intron | 35.0% | |
| GGTTAACTCAGTTGAGTATA+TGG | - | chr1.4:70406680-70406699 | None:intergenic | 35.0% | |
| GTCAAAACCTGAAAAACAAG+AGG | + | chr1.4:70408944-70408963 | MS.gene07205:CDS | 35.0% | |
| GTCACTTAAACGGTAATAGA+TGG | - | chr1.4:70408709-70408728 | None:intergenic | 35.0% | |
| GTTCGATGCTTAGTTGTATT+AGG | + | chr1.4:70406287-70406306 | MS.gene07205:intron | 35.0% | |
| TAAACGGTAATAGATGGTGA+AGG | - | chr1.4:70408703-70408722 | None:intergenic | 35.0% | |
| TCAACTTTCACATAATGTGG+AGG | - | chr1.4:70407617-70407636 | None:intergenic | 35.0% | |
| TCAATCTCTGCTATTGTTTC+AGG | + | chr1.4:70407496-70407515 | MS.gene07205:intron | 35.0% | |
| TGCAATTAACTACTTGTCGA+AGG | + | chr1.4:70406711-70406730 | MS.gene07205:intron | 35.0% | |
| ! | AAAGTTTGTGGCTTTTCTAG+TGG | + | chr1.4:70408325-70408344 | MS.gene07205:intron | 35.0% |
| ! | ACAAGAGGGTAATGATAATG+AGG | + | chr1.4:70408959-70408978 | MS.gene07205:CDS | 35.0% |
| ! | CAAGAGGGTAATGATAATGA+GGG | + | chr1.4:70408960-70408979 | MS.gene07205:CDS | 35.0% |
| ! | TGATCAAGATCAGATTTGGT+GGG | - | chr1.4:70408614-70408633 | None:intergenic | 35.0% |
| !! | GGTGTTTTTGTTTCATATGG+TGG | + | chr1.4:70406308-70406327 | MS.gene07205:intron | 35.0% |
| !! | TTTCATCTTGCATTGGTTGA+TGG | + | chr1.4:70408114-70408133 | MS.gene07205:intron | 35.0% |
| !!! | GATGGTTTTTGGTAGACATT+TGG | + | chr1.4:70408263-70408282 | MS.gene07205:intron | 35.0% |
| !!! | TCAGTTGATGAGATGGTTTT+TGG | + | chr1.4:70408252-70408271 | MS.gene07205:intron | 35.0% |
| !!! | TCATTACCCTCTTGTTTTTC+AGG | - | chr1.4:70408954-70408973 | None:intergenic | 35.0% |
| AAACGTGATTAACCAGGTGT+TGG | - | chr1.4:70406532-70406551 | None:intergenic | 40.0% | |
| AAAGTGAACCTTACTCCAGA+CGG | + | chr1.4:70407110-70407129 | MS.gene07205:CDS | 40.0% | |
| ACATTAACCTTGTCGAAGAG+TGG | - | chr1.4:70407194-70407213 | None:intergenic | 40.0% | |
| AGTTGATTGGGATAAATGGG+TGG | + | chr1.4:70407631-70407650 | MS.gene07205:CDS | 40.0% | |
| ATATCATATCTTACCCCACC+TGG | + | chr1.4:70408521-70408540 | MS.gene07205:intron | 40.0% | |
| CAGGAGAGCAAAATTAACGT+AGG | + | chr1.4:70407515-70407534 | MS.gene07205:intron | 40.0% | |
| CAGTGCTAATTGAACAGTCA+TGG | + | chr1.4:70406856-70406875 | MS.gene07205:intron | 40.0% | |
| CCAGACACAAAAGATGAAAC+AGG | - | chr1.4:70408146-70408165 | None:intergenic | 40.0% | |
| CTGGCTGACACTATATCTAA+TGG | + | chr1.4:70408162-70408181 | MS.gene07205:intron | 40.0% | |
| CTTCGACAAGGTTAATGTAG+AGG | + | chr1.4:70407196-70407215 | MS.gene07205:CDS | 40.0% | |
| GAAAAAGTCAAAACACCGTC+TGG | - | chr1.4:70407128-70407147 | None:intergenic | 40.0% | |
| TATCACTCAGGAATCCAGAA+TGG | - | chr1.4:70408574-70408593 | None:intergenic | 40.0% | |
| TTTGTGCTGCAGCAATTTGA+GGG | + | chr1.4:70407877-70407896 | MS.gene07205:intron | 40.0% | |
| ! | CCTGTTTCATCTTTTGTGTC+TGG | + | chr1.4:70408143-70408162 | MS.gene07205:intron | 40.0% |
| ! | CTGTAGGGCAACTATGTTTT+AGG | + | chr1.4:70408300-70408319 | MS.gene07205:intron | 40.0% |
| ! | GAGGCACTATAAACAACAGT+AGG | - | chr1.4:70408845-70408864 | None:intergenic | 40.0% |
| ! | GTTGGAGGTGTGGAAAAAAT+GGG | - | chr1.4:70406514-70406533 | None:intergenic | 40.0% |
| ! | TAACTACTTGTCGAAGGTGT+AGG | + | chr1.4:70406717-70406736 | MS.gene07205:intron | 40.0% |
| ! | TGTTGGAGGTGTGGAAAAAA+TGG | - | chr1.4:70406515-70406534 | None:intergenic | 40.0% |
| ! | TTTTGTGCTGCAGCAATTTG+AGG | + | chr1.4:70407876-70407895 | MS.gene07205:intron | 40.0% |
| AAAAGGCAGAGGATGAATGG+TGG | + | chr1.4:70407564-70407583 | MS.gene07205:CDS | 45.0% | |
| AATCCAGAATGGTGCAACTG+GGG | - | chr1.4:70408563-70408582 | None:intergenic | 45.0% | |
| CAGGTTTGATTACCTGCATG+AGG | + | chr1.4:70408491-70408510 | MS.gene07205:intron | 45.0% | |
| CTATGTCACGATTCAGTTGC+CGG | + | chr1.4:70407073-70407092 | MS.gene07205:CDS | 45.0% | |
| GAATCCAGAATGGTGCAACT+GGG | - | chr1.4:70408564-70408583 | None:intergenic | 45.0% | |
| GACGGTACATGCATATGTTG+TGG | + | chr1.4:70408023-70408042 | MS.gene07205:intron | 45.0% | |
| GGTGGATGAAGATGAAGATG+CGG | + | chr1.4:70407649-70407668 | MS.gene07205:CDS | 45.0% | |
| GTGGATGAAGATGAAGATGC+GGG | + | chr1.4:70407650-70407669 | MS.gene07205:CDS | 45.0% | |
| TGCAAAAGGCAGAGGATGAA+TGG | + | chr1.4:70407561-70407580 | MS.gene07205:CDS | 45.0% | |
| TTCCTTAGGTCTACAGCTTG+AGG | - | chr1.4:70408864-70408883 | None:intergenic | 45.0% | |
| TTTATTAGGTCTCGGTGACC+TGG | + | chr1.4:70407759-70407778 | MS.gene07205:intron | 45.0% | |
| ! | ATTTGAGGGTGATGATGCAG+TGG | + | chr1.4:70407891-70407910 | MS.gene07205:CDS | 45.0% |
| ! | CAGAGGATGAATGGTGGAAA+AGG | + | chr1.4:70407570-70407589 | MS.gene07205:CDS | 45.0% |
| ! | GAGGGTAATGATAATGAGGG+AGG | + | chr1.4:70408963-70408982 | MS.gene07205:CDS | 45.0% |
| ! | GTCGAAGGTGTAGGAAAAGT+TGG | + | chr1.4:70406726-70406745 | MS.gene07205:intron | 45.0% |
| ! | TCAAAACACCGTCTGGAGTA+AGG | - | chr1.4:70407121-70407140 | None:intergenic | 45.0% |
| ! | TGATAATGAGGGAGGTTCCA+CGG | + | chr1.4:70408971-70408990 | MS.gene07205:CDS | 45.0% |
| ! | TTTGACGACGGTGATGATGA+AGG | + | chr1.4:70407922-70407941 | MS.gene07205:CDS | 45.0% |
| ! | TTTGAGGGTGATGATGCAGT+GGG | + | chr1.4:70407892-70407911 | MS.gene07205:CDS | 45.0% |
| !! | TTGACTTTTTCTGCCACTGC+TGG | + | chr1.4:70407137-70407156 | MS.gene07205:CDS | 45.0% |
| AGTGAACTAGTAGCCTACGC+AGG | + | chr1.4:70408472-70408491 | MS.gene07205:intron | 50.0% | |
| ATCCAGAATGGTGCAACTGG+GGG | - | chr1.4:70408562-70408581 | None:intergenic | 50.0% | |
| ATGTGCTTGAAGCAGCTTCC+TGG | - | chr1.4:70409025-70409044 | None:intergenic | 50.0% | |
| CATATCTTACCCCACCTGGA+TGG | + | chr1.4:70408525-70408544 | MS.gene07205:intron | 50.0% | |
| CTGTGTAGTGCAAAAGGCAG+AGG | + | chr1.4:70407553-70407572 | MS.gene07205:CDS | 50.0% | |
| GATATCAAGCAGCCTCATGC+AGG | - | chr1.4:70408506-70408525 | None:intergenic | 50.0% | |
| GCAGGTAATCAAACCTGCGT+AGG | - | chr1.4:70408488-70408507 | None:intergenic | 50.0% | |
| GCTTGAATGCAGTCGTCATC+CGG | + | chr1.4:70407019-70407038 | MS.gene07205:intron | 50.0% | |
| GGAATCCAGAATGGTGCAAC+TGG | - | chr1.4:70408565-70408584 | None:intergenic | 50.0% | |
| TGCCTCAAGCTGTAGACCTA+AGG | + | chr1.4:70408859-70408878 | MS.gene07205:intron | 50.0% | |
| ! | CTTGGGAGGGATGGATTTCT+CGG | + | chr1.4:70407783-70407802 | MS.gene07205:CDS | 50.0% |
| ! | TTTTCCACACCTCCAACACC+TGG | + | chr1.4:70406517-70406536 | MS.gene07205:intron | 50.0% |
| !! | ACTTTTAGGGGCGTGTCTGT+AGG | + | chr1.4:70408188-70408207 | MS.gene07205:intron | 50.0% |
| !! | CGTGATTAACCAGGTGTTGG+AGG | - | chr1.4:70406529-70406548 | None:intergenic | 50.0% |
| !! | TTAACCAGGTGTTGGAGGTG+TGG | - | chr1.4:70406524-70406543 | None:intergenic | 50.0% |
| AACACGGTAGCCATCCAGGT+GGG | - | chr1.4:70408538-70408557 | None:intergenic | 55.0% | |
| AATCCATCCCTCCCAAGTCC+AGG | - | chr1.4:70407780-70407799 | None:intergenic | 55.0% | |
| AATGAGGGAGGTTCCACGGT+TGG | + | chr1.4:70408975-70408994 | MS.gene07205:CDS | 55.0% | |
| CCAGTTGCCACTCTTCGACA+AGG | + | chr1.4:70407184-70407203 | MS.gene07205:CDS | 55.0% | |
| CCTTGTCGAAGAGTGGCAAC+TGG | - | chr1.4:70407187-70407206 | None:intergenic | 55.0% | |
| CTTTGAGCCCACTTGACCTC+CGG | - | chr1.4:70407041-70407060 | None:intergenic | 55.0% | |
| GCAACTGGAGCTCATAGAGG+TGG | - | chr1.4:70407172-70407191 | None:intergenic | 55.0% | |
| GCTTGAAGCAGCTTCCTGGA+CGG | - | chr1.4:70409021-70409040 | None:intergenic | 55.0% | |
| GTGGCAACTGGAGCTCATAG+AGG | - | chr1.4:70407175-70407194 | None:intergenic | 55.0% | |
| TAACACGGTAGCCATCCAGG+TGG | - | chr1.4:70408539-70408558 | None:intergenic | 55.0% | |
| TACCCCCAGTTGCACCATTC+TGG | + | chr1.4:70408557-70408576 | MS.gene07205:intron | 55.0% | |
| TCGTCATCCGGAGGTCAAGT+GGG | + | chr1.4:70407031-70407050 | MS.gene07205:CDS | 55.0% | |
| TGAATGCAGTCGTCATCCGG+AGG | + | chr1.4:70407022-70407041 | MS.gene07205:intron | 55.0% | |
| TGGTGCAACTGGGGGTAACA+CGG | - | chr1.4:70408554-70408573 | None:intergenic | 55.0% | |
| ! | GGAGGTCAAGTGGGCTCAAA+GGG | + | chr1.4:70407040-70407059 | MS.gene07205:CDS | 55.0% |
| !! | GTGGGTGCGGATTTTGACGA+CGG | + | chr1.4:70407910-70407929 | MS.gene07205:CDS | 55.0% |
| ACACGGTAGCCATCCAGGTG+GGG | - | chr1.4:70408537-70408556 | None:intergenic | 60.0% | |
| AGGTCTCGGTGACCTGGACT+TGG | + | chr1.4:70407765-70407784 | MS.gene07205:intron | 60.0% | |
| GGGTAACACGGTAGCCATCC+AGG | - | chr1.4:70408542-70408561 | None:intergenic | 60.0% | |
| GGTCTCGGTGACCTGGACTT+GGG | + | chr1.4:70407766-70407785 | MS.gene07205:intron | 60.0% | |
| GTCGTCATCCGGAGGTCAAG+TGG | + | chr1.4:70407030-70407049 | MS.gene07205:intron | 60.0% | |
| GTGGTCTTCAGCACCAGCAG+TGG | - | chr1.4:70407153-70407172 | None:intergenic | 60.0% | |
| TCCACGGTTGGAGACCAAGC+TGG | + | chr1.4:70408987-70409006 | MS.gene07205:CDS | 60.0% | |
| TCGGTGACCTGGACTTGGGA+GGG | + | chr1.4:70407770-70407789 | MS.gene07205:CDS | 60.0% | |
| TGACCTGGACTTGGGAGGGA+TGG | + | chr1.4:70407774-70407793 | MS.gene07205:CDS | 60.0% | |
| ! | CGGAGGTCAAGTGGGCTCAA+AGG | + | chr1.4:70407039-70407058 | MS.gene07205:CDS | 60.0% |
| ! | GGGTGATGATGCAGTGGGTG+CGG | + | chr1.4:70407897-70407916 | MS.gene07205:CDS | 60.0% |
| CTCGGTGACCTGGACTTGGG+AGG | + | chr1.4:70407769-70407788 | MS.gene07205:CDS | 65.0% | |
| GCCAGCTTGGTCTCCAACCG+TGG | - | chr1.4:70408991-70409010 | None:intergenic | 65.0% | |
| GGACGGTGCTCTTGCCAGCT+TGG | - | chr1.4:70409004-70409023 | None:intergenic | 65.0% | |
| !! | AGCTGGCAAGAGCACCGTCC+AGG | + | chr1.4:70409004-70409023 | MS.gene07205:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 70406190 | 70409046 | 70406190 | ID=MS.gene07205 |
| chr1.4 | mRNA | 70406190 | 70409046 | 70406190 | ID=MS.gene07205.t1;Parent=MS.gene07205 |
| chr1.4 | exon | 70406190 | 70406194 | 70406190 | ID=MS.gene07205.t1.exon1;Parent=MS.gene07205.t1 |
| chr1.4 | CDS | 70406190 | 70406194 | 70406190 | ID=cds.MS.gene07205.t1;Parent=MS.gene07205.t1 |
| chr1.4 | exon | 70407031 | 70407217 | 70407031 | ID=MS.gene07205.t1.exon2;Parent=MS.gene07205.t1 |
| chr1.4 | CDS | 70407031 | 70407217 | 70407031 | ID=cds.MS.gene07205.t1;Parent=MS.gene07205.t1 |
| chr1.4 | exon | 70407518 | 70407671 | 70407518 | ID=MS.gene07205.t1.exon3;Parent=MS.gene07205.t1 |
| chr1.4 | CDS | 70407518 | 70407671 | 70407518 | ID=cds.MS.gene07205.t1;Parent=MS.gene07205.t1 |
| chr1.4 | exon | 70407767 | 70407804 | 70407767 | ID=MS.gene07205.t1.exon4;Parent=MS.gene07205.t1 |
| chr1.4 | CDS | 70407767 | 70407804 | 70407767 | ID=cds.MS.gene07205.t1;Parent=MS.gene07205.t1 |
| chr1.4 | exon | 70407889 | 70407943 | 70407889 | ID=MS.gene07205.t1.exon5;Parent=MS.gene07205.t1 |
| chr1.4 | CDS | 70407889 | 70407943 | 70407889 | ID=cds.MS.gene07205.t1;Parent=MS.gene07205.t1 |
| chr1.4 | exon | 70408934 | 70409046 | 70408934 | ID=MS.gene07205.t1.exon6;Parent=MS.gene07205.t1 |
| chr1.4 | CDS | 70408934 | 70409046 | 70408934 | ID=cds.MS.gene07205.t1;Parent=MS.gene07205.t1 |
| Gene Sequence |
| Protein sequence |
