Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072400.t1 | XP_024627097.1 | 99.2 | 384 | 3 | 0 | 1 | 384 | 1 | 384 | 1.10E-232 | 815.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072400.t1 | P48631 | 88.0 | 383 | 45 | 1 | 1 | 383 | 1 | 382 | 4.8e-205 | 714.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072400.t1 | G7KVD5 | 99.2 | 384 | 3 | 0 | 1 | 384 | 51 | 434 | 7.7e-233 | 815.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene77362 | MS.gene072400 | PPI |
MS.gene072400 | MS.gene037458 | PPI |
MS.gene84178 | MS.gene072400 | PPI |
MS.gene072400 | MS.gene95615 | PPI |
MS.gene072400 | MS.gene94675 | PPI |
MS.gene072400 | MS.gene33504 | PPI |
MS.gene072400 | MS.gene47828 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072400.t1 | MTR_7g093200 | 99.219 | 384 | 3 | 0 | 1 | 384 | 51 | 434 | 0.0 | 795 |
MS.gene072400.t1 | MTR_1g054035 | 79.740 | 385 | 76 | 2 | 1 | 384 | 1 | 384 | 0.0 | 633 |
MS.gene072400.t1 | MTR_1g111880 | 66.667 | 384 | 106 | 4 | 1 | 384 | 5 | 366 | 0.0 | 514 |
MS.gene072400.t1 | MTR_5g071170 | 38.415 | 328 | 181 | 6 | 25 | 349 | 38 | 347 | 2.95e-66 | 215 |
MS.gene072400.t1 | MTR_7g068780 | 38.462 | 325 | 179 | 7 | 25 | 346 | 92 | 398 | 4.27e-62 | 206 |
MS.gene072400.t1 | MTR_3g464330 | 36.657 | 341 | 192 | 7 | 12 | 349 | 19 | 338 | 1.07e-60 | 201 |
MS.gene072400.t1 | MTR_4g015630 | 38.769 | 325 | 178 | 7 | 25 | 346 | 86 | 392 | 2.39e-59 | 199 |
MS.gene072400.t1 | MTR_7g068780 | 33.456 | 272 | 157 | 6 | 25 | 295 | 92 | 340 | 1.89e-35 | 133 |
MS.gene072400.t1 | MTR_2g460790 | 26.792 | 265 | 165 | 8 | 87 | 344 | 153 | 395 | 2.22e-18 | 86.7 |
MS.gene072400.t1 | MTR_4g130980 | 23.913 | 322 | 219 | 9 | 31 | 344 | 91 | 394 | 2.41e-17 | 83.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072400.t1 | AT3G12120 | 78.590 | 383 | 81 | 1 | 1 | 383 | 1 | 382 | 0.0 | 647 |
MS.gene072400.t1 | AT3G12120 | 78.590 | 383 | 81 | 1 | 1 | 383 | 1 | 382 | 0.0 | 647 |
MS.gene072400.t1 | AT2G29980 | 39.255 | 349 | 190 | 8 | 6 | 350 | 8 | 338 | 3.45e-66 | 215 |
MS.gene072400.t1 | AT5G05580 | 39.039 | 333 | 184 | 8 | 16 | 346 | 74 | 389 | 1.43e-64 | 212 |
MS.gene072400.t1 | AT3G11170 | 37.425 | 334 | 187 | 7 | 17 | 346 | 81 | 396 | 1.74e-63 | 209 |
MS.gene072400.t1 | AT5G05580 | 37.578 | 322 | 182 | 8 | 16 | 335 | 74 | 378 | 7.41e-58 | 193 |
MS.gene072400.t1 | AT2G29980 | 33.898 | 295 | 170 | 7 | 6 | 298 | 8 | 279 | 5.43e-40 | 144 |
MS.gene072400.t1 | AT4G30950 | 25.141 | 354 | 218 | 13 | 10 | 347 | 76 | 398 | 3.71e-17 | 83.2 |
Find 0 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGGCAATAAAACCAATTTT+GGG | + | 51337:123667-123686 | MS.gene072400:CDS | 25.0% |
!!! | CAATTTTGGGAGATTATTAT+CGG | + | 51337:123680-123699 | MS.gene072400:CDS | 25.0% |
AAACAACATAGGAGAATGAA+TGG | - | 51337:122817-122836 | None:intergenic | 30.0% | |
CAAATATATGTATCAGATGC+AGG | + | 51337:123337-123356 | MS.gene072400:CDS | 30.0% | |
CGATAATAATCTCCCAAAAT+TGG | - | 51337:123682-123701 | None:intergenic | 30.0% | |
CTGTATTTCCATGAAAAGTA+AGG | - | 51337:123064-123083 | None:intergenic | 30.0% | |
TATTCTGGTACAACAATAAG+TGG | + | 51337:123794-123813 | MS.gene072400:CDS | 30.0% | |
! | CAAGGCAATAAAACCAATTT+TGG | + | 51337:123666-123685 | MS.gene072400:CDS | 30.0% |
!!! | CAAAATTGGTTTTATTGCCT+TGG | - | 51337:123668-123687 | None:intergenic | 30.0% |
AAACATTGAGAGCCAAGTAA+AGG | - | 51337:123243-123262 | None:intergenic | 35.0% | |
AACATTGAGAGCCAAGTAAA+GGG | - | 51337:123242-123261 | None:intergenic | 35.0% | |
AATGCCACATTATCATGCAA+TGG | + | 51337:123636-123655 | MS.gene072400:CDS | 35.0% | |
ATGCATTCAGTGACTATCAA+TGG | + | 51337:122993-123012 | MS.gene072400:CDS | 35.0% | |
CAATATTACAGACACTCATG+TGG | + | 51337:123594-123613 | MS.gene072400:CDS | 35.0% | |
CATGAGTGTCTGTAATATTG+TGG | - | 51337:123594-123613 | None:intergenic | 35.0% | |
CTCCATAATGCCTTGTAAAA+TGG | - | 51337:123718-123737 | None:intergenic | 35.0% | |
TGGCAAGCAAATCTATCATA+AGG | - | 51337:123274-123293 | None:intergenic | 35.0% | |
TTTGGGAGATTATTATCGGT+TGG | + | 51337:123684-123703 | MS.gene072400:CDS | 35.0% | |
! | ATTGATAGTCACTGAATGCA+TGG | - | 51337:122994-123013 | None:intergenic | 35.0% |
! | GGATGAAACACCATTTTACA+AGG | + | 51337:123705-123724 | MS.gene072400:CDS | 35.0% |
!! | CACCATTTTACAAGGCATTA+TGG | + | 51337:123713-123732 | MS.gene072400:CDS | 35.0% |
!! | TTCTTGTGCCTTACTTTTCA+TGG | + | 51337:123053-123072 | MS.gene072400:CDS | 35.0% |
AACAGAAGTCCAGCATCTAT+TGG | + | 51337:123143-123162 | MS.gene072400:CDS | 40.0% | |
ACATTACGATTCCTCTGAGT+GGG | + | 51337:123507-123526 | MS.gene072400:CDS | 40.0% | |
ACATTGAGAGCCAAGTAAAG+GGG | - | 51337:123241-123260 | None:intergenic | 40.0% | |
ACGTTCACGATCTGAGTAAA+TGG | - | 51337:123314-123333 | None:intergenic | 40.0% | |
AGAGAATGACACTGTGAAAC+GGG | + | 51337:122712-122731 | MS.gene072400:CDS | 40.0% | |
ATAGATGCTGGACTTCTGTT+TGG | - | 51337:123143-123162 | None:intergenic | 40.0% | |
ATCTATGTTGAGCCAGATCA+AGG | + | 51337:123754-123773 | MS.gene072400:CDS | 40.0% | |
CAGAGAATGACACTGTGAAA+CGG | + | 51337:122711-122730 | MS.gene072400:CDS | 40.0% | |
CGTTCACGATCTGAGTAAAT+GGG | - | 51337:123313-123332 | None:intergenic | 40.0% | |
CTTAAAACAGTGAGGTGGAA+TGG | - | 51337:122783-122802 | None:intergenic | 40.0% | |
GAATACTTGCAGTGTGCTTT+GGG | + | 51337:123359-123378 | MS.gene072400:CDS | 40.0% | |
GGTGAGGTCATAAACAACAT+AGG | - | 51337:122828-122847 | None:intergenic | 40.0% | |
GTAAATGGAGGCTTCTCAAA+TGG | - | 51337:122740-122759 | None:intergenic | 40.0% | |
GTAATAGAGGATGAAGGCTA+TGG | - | 51337:122849-122868 | None:intergenic | 40.0% | |
TAGATGCTGGACTTCTGTTT+GGG | - | 51337:123142-123161 | None:intergenic | 40.0% | |
TATTGTGGAAGACCTTGTTC+AGG | - | 51337:123579-123598 | None:intergenic | 40.0% | |
TTGATCTGGCTGAGAGTAAA+TGG | - | 51337:122755-122774 | None:intergenic | 40.0% | |
! | AATCCATTGACTACAAGCAG+TGG | - | 51337:123442-123461 | None:intergenic | 40.0% |
! | ATTTTTGCAGCATACTCACC+CGG | + | 51337:123477-123496 | MS.gene072400:CDS | 40.0% |
! | GCTTGTAGTCAATGGATTCT+TGG | + | 51337:123444-123463 | MS.gene072400:CDS | 40.0% |
! | TACTTGGCTCTCAATGTTTC+AGG | + | 51337:123244-123263 | MS.gene072400:CDS | 40.0% |
! | TGCATGATAATGTGGCATTG+TGG | - | 51337:123635-123654 | None:intergenic | 40.0% |
! | TGGGTTGTTGCTAAGGTATT+TGG | - | 51337:123173-123192 | None:intergenic | 40.0% |
! | TTTGGAGTACCAATAGATGC+TGG | - | 51337:123155-123174 | None:intergenic | 40.0% |
AATCGTAATGTGGCAATGCC+GGG | - | 51337:123498-123517 | None:intergenic | 45.0% | |
AATGGGTGGCAACGTAATAG+AGG | - | 51337:122862-122881 | None:intergenic | 45.0% | |
ATCCAAGGTTGCATCCTTAC+CGG | + | 51337:122938-122957 | MS.gene072400:CDS | 45.0% | |
ATCTGGCTGAGAGTAAATGG+AGG | - | 51337:122752-122771 | None:intergenic | 45.0% | |
ATGTGCAATGACCCAAACAC+CGG | - | 51337:122960-122979 | None:intergenic | 45.0% | |
ATTACCATCACCCTCACTCT+TGG | + | 51337:123211-123230 | MS.gene072400:CDS | 45.0% | |
CAATGGCTTGACGATACAGT+TGG | + | 51337:123010-123029 | MS.gene072400:CDS | 45.0% | |
CACATTACGATTCCTCTGAG+TGG | + | 51337:123506-123525 | MS.gene072400:CDS | 45.0% | |
CACTCAGAGGAATCGTAATG+TGG | - | 51337:123508-123527 | None:intergenic | 45.0% | |
CCAGAATACACCCTTTCTCT+CGG | - | 51337:123782-123801 | None:intergenic | 45.0% | |
CTGAGTAAATGGGACCATGT+GGG | - | 51337:123303-123322 | None:intergenic | 45.0% | |
GAAGAGCAGAGTGGAGAATA+AGG | - | 51337:123036-123055 | None:intergenic | 45.0% | |
GAATCGTAATGTGGCAATGC+CGG | - | 51337:123499-123518 | None:intergenic | 45.0% | |
GATAGTCACTGAATGCATGG+TGG | - | 51337:122991-123010 | None:intergenic | 45.0% | |
GATTCCGTAATCCCTGTCAA+CGG | - | 51337:123557-123576 | None:intergenic | 45.0% | |
GCCACATTATCATGCAATGG+AGG | + | 51337:123639-123658 | MS.gene072400:CDS | 45.0% | |
GGAATACTTGCAGTGTGCTT+TGG | + | 51337:123358-123377 | MS.gene072400:CDS | 45.0% | |
GGATTACGGAATCCTGAACA+AGG | + | 51337:123564-123583 | MS.gene072400:CDS | 45.0% | |
GGCAACGTAATAGAGGATGA+AGG | - | 51337:122855-122874 | None:intergenic | 45.0% | |
GTGGAATGGCTTTCTTGATC+TGG | - | 51337:122769-122788 | None:intergenic | 45.0% | |
GTTCCACTGCTTGTAGTCAA+TGG | + | 51337:123436-123455 | MS.gene072400:CDS | 45.0% | |
TACCTTAGCAACAACCCACT+AGG | + | 51337:123175-123194 | MS.gene072400:CDS | 45.0% | |
TCCATAAACACACACAACCC+AGG | - | 51337:123416-123435 | None:intergenic | 45.0% | |
TCTGAGTAAATGGGACCATG+TGG | - | 51337:123304-123323 | None:intergenic | 45.0% | |
TTGCATCCTTACCGGTGTTT+GGG | + | 51337:122946-122965 | MS.gene072400:CDS | 45.0% | |
TTTCTCTCGGTACCTTGATC+TGG | - | 51337:123769-123788 | None:intergenic | 45.0% | |
! | AAGAGTGAGGGTGATGGTAA+TGG | - | 51337:123212-123231 | None:intergenic | 45.0% |
! | ACAGAGCGCTTAAAACAGTG+AGG | - | 51337:122791-122810 | None:intergenic | 45.0% |
! | CAAGAGAACCAGTGTTGGAA+TGG | - | 51337:123099-123118 | None:intergenic | 45.0% |
! | GCCTCCATTGCATGATAATG+TGG | - | 51337:123643-123662 | None:intergenic | 45.0% |
!! | AGATCAAGGTACCGAGAGAA+AGG | + | 51337:123768-123787 | MS.gene072400:CDS | 45.0% |
!! | AGGAAGGTGCTGGAAGTAAT+GGG | - | 51337:122879-122898 | None:intergenic | 45.0% |
!! | GATCAAGGTACCGAGAGAAA+GGG | + | 51337:123769-123788 | MS.gene072400:CDS | 45.0% |
AAGGCACAAGAAGAGCAGAG+TGG | - | 51337:123045-123064 | None:intergenic | 50.0% | |
AGAGGATGAAGGCTATGGTG+AGG | - | 51337:122844-122863 | None:intergenic | 50.0% | |
CAATGACCCAAACACCGGTA+AGG | - | 51337:122955-122974 | None:intergenic | 50.0% | |
GAGCGCTTAAAACAGTGAGG+TGG | - | 51337:122788-122807 | None:intergenic | 50.0% | |
GCAACCGTTGACAGGGATTA+CGG | + | 51337:123550-123569 | MS.gene072400:CDS | 50.0% | |
GCCTGGGTTGTGTGTGTTTA+TGG | + | 51337:123412-123431 | MS.gene072400:CDS | 50.0% | |
GTTGCATCCTTACCGGTGTT+TGG | + | 51337:122945-122964 | MS.gene072400:CDS | 50.0% | |
TACCATCTTGCCATGGCCAA+AGG | + | 51337:123385-123404 | MS.gene072400:CDS | 50.0% | |
TCATGCAATGGAGGCTACCA+AGG | + | 51337:123648-123667 | MS.gene072400:CDS | 50.0% | |
TGGCTCTCAATGTTTCAGGC+AGG | + | 51337:123248-123267 | MS.gene072400:CDS | 50.0% | |
TGGGCTTTACCATCTTGCCA+TGG | + | 51337:123378-123397 | MS.gene072400:CDS | 50.0% | |
TGGGTCATTGCACATGAGTG+TGG | + | 51337:122965-122984 | MS.gene072400:CDS | 50.0% | |
TTCTCTGACTTCCTAGCCGA+AGG | - | 51337:122698-122717 | None:intergenic | 50.0% | |
! | AACCAGTGTTGGAATGGTGG+CGG | - | 51337:123093-123112 | None:intergenic | 50.0% |
! | AGCTTTGGCAACCGTTGACA+GGG | + | 51337:123543-123562 | MS.gene072400:CDS | 50.0% |
! | CCGAGAGAAAGGGTGTATTC+TGG | + | 51337:123779-123798 | MS.gene072400:CDS | 50.0% |
! | GAGAACCAGTGTTGGAATGG+TGG | - | 51337:123096-123115 | None:intergenic | 50.0% |
! | TGGGACCATGTGGGTTAAAG+TGG | - | 51337:123294-123313 | None:intergenic | 50.0% |
!! | AAGGTGCTGGAAGTAATGGG+TGG | - | 51337:122876-122895 | None:intergenic | 50.0% |
!! | CAACACTGGTTCTCTTGAGC+GGG | + | 51337:123102-123121 | MS.gene072400:CDS | 50.0% |
!! | CCAACACTGGTTCTCTTGAG+CGG | + | 51337:123101-123120 | MS.gene072400:CDS | 50.0% |
!! | GAGGAAGGTGCTGGAAGTAA+TGG | - | 51337:122880-122899 | None:intergenic | 50.0% |
!! | GCTTGCCACTTTAACCCACA+TGG | + | 51337:123286-123305 | MS.gene072400:CDS | 50.0% |
!! | TGAGGGTGATGGTAATGGTG+AGG | - | 51337:123207-123226 | None:intergenic | 50.0% |
!! | TGCCTAGTGGGTTGTTGCTA+AGG | - | 51337:123180-123199 | None:intergenic | 50.0% |
ACGATTCCTCTGAGTGGGAC+TGG | + | 51337:123512-123531 | MS.gene072400:CDS | 55.0% | |
AGAAAGAGAGAGGGCGAGGA+AGG | - | 51337:122895-122914 | None:intergenic | 55.0% | |
ATGGTGAGGACTCTGCCTAG+TGG | - | 51337:123193-123212 | None:intergenic | 55.0% | |
CACAACCCAGGCAAGACCTT+TGG | - | 51337:123404-123423 | None:intergenic | 55.0% | |
CACCGGTAAGGATGCAACCT+TGG | - | 51337:122943-122962 | None:intergenic | 55.0% | |
CATGGCCAAAGGTCTTGCCT+GGG | + | 51337:123396-123415 | MS.gene072400:CDS | 55.0% | |
CCGAACCTCTGTTCCTCCTT+CGG | + | 51337:122679-122698 | MS.gene072400:CDS | 55.0% | |
CCGAAGGAGGAACAGAGGTT+CGG | - | 51337:122682-122701 | None:intergenic | 55.0% | |
CCGCTCAAGAGAACCAGTGT+TGG | - | 51337:123104-123123 | None:intergenic | 55.0% | |
GACCTTTGGCCATGGCAAGA+TGG | - | 51337:123390-123409 | None:intergenic | 55.0% | |
GCAACCTTGGATAGCCCAGT+AGG | - | 51337:122930-122949 | None:intergenic | 55.0% | |
GCCAGGCCAAGAAAGAGAGA+GGG | - | 51337:122904-122923 | None:intergenic | 55.0% | |
TCCTCGCCCTCTCTCTTTCT+TGG | + | 51337:122895-122914 | MS.gene072400:CDS | 55.0% | |
TCTCAACCAGTCCCACTCAG+AGG | - | 51337:123521-123540 | None:intergenic | 55.0% | |
TCTGACTTCCTAGCCGAAGG+AGG | - | 51337:122695-122714 | None:intergenic | 55.0% | |
TGGTGAGGACTCTGCCTAGT+GGG | - | 51337:123192-123211 | None:intergenic | 55.0% | |
! | GAGCTTTGGCAACCGTTGAC+AGG | + | 51337:123542-123561 | MS.gene072400:CDS | 55.0% |
! | TCTTGGCTGGCCCCTTTACT+TGG | + | 51337:123228-123247 | MS.gene072400:CDS | 55.0% |
!! | GGACTGGTTGAGAGGAGCTT+TGG | + | 51337:123528-123547 | MS.gene072400:CDS | 55.0% |
!! | TCTGAGTGGGACTGGTTGAG+AGG | + | 51337:123520-123539 | MS.gene072400:CDS | 55.0% |
AAAGGGGCCAGCCAAGAGTG+AGG | - | 51337:123225-123244 | None:intergenic | 60.0% | |
AAGGGGCCAGCCAAGAGTGA+GGG | - | 51337:123224-123243 | None:intergenic | 60.0% | |
CCAGCCAAGAGTGAGGGTGA+TGG | - | 51337:123218-123237 | None:intergenic | 60.0% | |
CCAGGCAAGACCTTTGGCCA+TGG | - | 51337:123398-123417 | None:intergenic | 60.0% | |
CCATCACCCTCACTCTTGGC+TGG | + | 51337:123215-123234 | MS.gene072400:CDS | 60.0% | |
CCATGGCCAAAGGTCTTGCC+TGG | + | 51337:123395-123414 | MS.gene072400:CDS | 60.0% | |
CCTAGCCGAAGGAGGAACAG+AGG | - | 51337:122687-122706 | None:intergenic | 60.0% | |
CCTCTGTTCCTCCTTCGGCT+AGG | + | 51337:122684-122703 | MS.gene072400:CDS | 60.0% | |
CCTGCCTACTGGGCTATCCA+AGG | + | 51337:122923-122942 | MS.gene072400:CDS | 60.0% | |
CCTTGGATAGCCCAGTAGGC+AGG | - | 51337:122926-122945 | None:intergenic | 60.0% | |
GCCAAGAAAGAGAGAGGGCG+AGG | - | 51337:122899-122918 | None:intergenic | 60.0% | |
GCCCTCTCTCTTTCTTGGCC+TGG | + | 51337:122900-122919 | MS.gene072400:CDS | 60.0% | |
GGCCAGGCCAAGAAAGAGAG+AGG | - | 51337:122905-122924 | None:intergenic | 60.0% | |
!! | TGTTGGAATGGTGGCGGCGA+TGG | - | 51337:123087-123106 | None:intergenic | 60.0% |
CGCCGCCACCATTCCAACAC+TGG | + | 51337:123088-123107 | MS.gene072400:CDS | 65.0% | |
CTTGGCCTGGCCTGCCTACT+GGG | + | 51337:122913-122932 | MS.gene072400:CDS | 65.0% | |
GATAGCCCAGTAGGCAGGCC+AGG | - | 51337:122921-122940 | None:intergenic | 65.0% | |
TCTTGGCCTGGCCTGCCTAC+TGG | + | 51337:122912-122931 | MS.gene072400:CDS | 65.0% | |
! | AGAGAGGGCGAGGAAGGTGC+TGG | - | 51337:122889-122908 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
51337 | gene | 122665 | 123819 | 122665 | ID=MS.gene072400 |
51337 | mRNA | 122665 | 123819 | 122665 | ID=MS.gene072400.t1;Parent=MS.gene072400 |
51337 | exon | 122665 | 123819 | 122665 | ID=MS.gene072400.t1.exon1;Parent=MS.gene072400.t1 |
51337 | CDS | 122665 | 123819 | 122665 | ID=cds.MS.gene072400.t1;Parent=MS.gene072400.t1 |
Gene Sequence |
Protein sequence |