AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072400.t1 MTR_7g093200 99.219 384 3 0 1 384 51 434 0.0 795
MS.gene072400.t1 MTR_1g054035 79.740 385 76 2 1 384 1 384 0.0 633
MS.gene072400.t1 MTR_1g111880 66.667 384 106 4 1 384 5 366 0.0 514
MS.gene072400.t1 MTR_5g071170 38.415 328 181 6 25 349 38 347 2.95e-66 215
MS.gene072400.t1 MTR_7g068780 38.462 325 179 7 25 346 92 398 4.27e-62 206
MS.gene072400.t1 MTR_3g464330 36.657 341 192 7 12 349 19 338 1.07e-60 201
MS.gene072400.t1 MTR_4g015630 38.769 325 178 7 25 346 86 392 2.39e-59 199
MS.gene072400.t1 MTR_7g068780 33.456 272 157 6 25 295 92 340 1.89e-35 133
MS.gene072400.t1 MTR_2g460790 26.792 265 165 8 87 344 153 395 2.22e-18 86.7
MS.gene072400.t1 MTR_4g130980 23.913 322 219 9 31 344 91 394 2.41e-17 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072400.t1 AT3G12120 78.590 383 81 1 1 383 1 382 0.0 647
MS.gene072400.t1 AT3G12120 78.590 383 81 1 1 383 1 382 0.0 647
MS.gene072400.t1 AT2G29980 39.255 349 190 8 6 350 8 338 3.45e-66 215
MS.gene072400.t1 AT5G05580 39.039 333 184 8 16 346 74 389 1.43e-64 212
MS.gene072400.t1 AT3G11170 37.425 334 187 7 17 346 81 396 1.74e-63 209
MS.gene072400.t1 AT5G05580 37.578 322 182 8 16 335 74 378 7.41e-58 193
MS.gene072400.t1 AT2G29980 33.898 295 170 7 6 298 8 279 5.43e-40 144
MS.gene072400.t1 AT4G30950 25.141 354 218 13 10 347 76 398 3.71e-17 83.2

Find 0 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGGCAATAAAACCAATTTT+GGG + 51337:123667-123686 MS.gene072400:CDS 25.0%
!!! CAATTTTGGGAGATTATTAT+CGG + 51337:123680-123699 MS.gene072400:CDS 25.0%
AAACAACATAGGAGAATGAA+TGG - 51337:122817-122836 None:intergenic 30.0%
CAAATATATGTATCAGATGC+AGG + 51337:123337-123356 MS.gene072400:CDS 30.0%
CGATAATAATCTCCCAAAAT+TGG - 51337:123682-123701 None:intergenic 30.0%
CTGTATTTCCATGAAAAGTA+AGG - 51337:123064-123083 None:intergenic 30.0%
TATTCTGGTACAACAATAAG+TGG + 51337:123794-123813 MS.gene072400:CDS 30.0%
! CAAGGCAATAAAACCAATTT+TGG + 51337:123666-123685 MS.gene072400:CDS 30.0%
!!! CAAAATTGGTTTTATTGCCT+TGG - 51337:123668-123687 None:intergenic 30.0%
AAACATTGAGAGCCAAGTAA+AGG - 51337:123243-123262 None:intergenic 35.0%
AACATTGAGAGCCAAGTAAA+GGG - 51337:123242-123261 None:intergenic 35.0%
AATGCCACATTATCATGCAA+TGG + 51337:123636-123655 MS.gene072400:CDS 35.0%
ATGCATTCAGTGACTATCAA+TGG + 51337:122993-123012 MS.gene072400:CDS 35.0%
CAATATTACAGACACTCATG+TGG + 51337:123594-123613 MS.gene072400:CDS 35.0%
CATGAGTGTCTGTAATATTG+TGG - 51337:123594-123613 None:intergenic 35.0%
CTCCATAATGCCTTGTAAAA+TGG - 51337:123718-123737 None:intergenic 35.0%
TGGCAAGCAAATCTATCATA+AGG - 51337:123274-123293 None:intergenic 35.0%
TTTGGGAGATTATTATCGGT+TGG + 51337:123684-123703 MS.gene072400:CDS 35.0%
! ATTGATAGTCACTGAATGCA+TGG - 51337:122994-123013 None:intergenic 35.0%
! GGATGAAACACCATTTTACA+AGG + 51337:123705-123724 MS.gene072400:CDS 35.0%
!! CACCATTTTACAAGGCATTA+TGG + 51337:123713-123732 MS.gene072400:CDS 35.0%
!! TTCTTGTGCCTTACTTTTCA+TGG + 51337:123053-123072 MS.gene072400:CDS 35.0%
AACAGAAGTCCAGCATCTAT+TGG + 51337:123143-123162 MS.gene072400:CDS 40.0%
ACATTACGATTCCTCTGAGT+GGG + 51337:123507-123526 MS.gene072400:CDS 40.0%
ACATTGAGAGCCAAGTAAAG+GGG - 51337:123241-123260 None:intergenic 40.0%
ACGTTCACGATCTGAGTAAA+TGG - 51337:123314-123333 None:intergenic 40.0%
AGAGAATGACACTGTGAAAC+GGG + 51337:122712-122731 MS.gene072400:CDS 40.0%
ATAGATGCTGGACTTCTGTT+TGG - 51337:123143-123162 None:intergenic 40.0%
ATCTATGTTGAGCCAGATCA+AGG + 51337:123754-123773 MS.gene072400:CDS 40.0%
CAGAGAATGACACTGTGAAA+CGG + 51337:122711-122730 MS.gene072400:CDS 40.0%
CGTTCACGATCTGAGTAAAT+GGG - 51337:123313-123332 None:intergenic 40.0%
CTTAAAACAGTGAGGTGGAA+TGG - 51337:122783-122802 None:intergenic 40.0%
GAATACTTGCAGTGTGCTTT+GGG + 51337:123359-123378 MS.gene072400:CDS 40.0%
GGTGAGGTCATAAACAACAT+AGG - 51337:122828-122847 None:intergenic 40.0%
GTAAATGGAGGCTTCTCAAA+TGG - 51337:122740-122759 None:intergenic 40.0%
GTAATAGAGGATGAAGGCTA+TGG - 51337:122849-122868 None:intergenic 40.0%
TAGATGCTGGACTTCTGTTT+GGG - 51337:123142-123161 None:intergenic 40.0%
TATTGTGGAAGACCTTGTTC+AGG - 51337:123579-123598 None:intergenic 40.0%
TTGATCTGGCTGAGAGTAAA+TGG - 51337:122755-122774 None:intergenic 40.0%
! AATCCATTGACTACAAGCAG+TGG - 51337:123442-123461 None:intergenic 40.0%
! ATTTTTGCAGCATACTCACC+CGG + 51337:123477-123496 MS.gene072400:CDS 40.0%
! GCTTGTAGTCAATGGATTCT+TGG + 51337:123444-123463 MS.gene072400:CDS 40.0%
! TACTTGGCTCTCAATGTTTC+AGG + 51337:123244-123263 MS.gene072400:CDS 40.0%
! TGCATGATAATGTGGCATTG+TGG - 51337:123635-123654 None:intergenic 40.0%
! TGGGTTGTTGCTAAGGTATT+TGG - 51337:123173-123192 None:intergenic 40.0%
! TTTGGAGTACCAATAGATGC+TGG - 51337:123155-123174 None:intergenic 40.0%
AATCGTAATGTGGCAATGCC+GGG - 51337:123498-123517 None:intergenic 45.0%
AATGGGTGGCAACGTAATAG+AGG - 51337:122862-122881 None:intergenic 45.0%
ATCCAAGGTTGCATCCTTAC+CGG + 51337:122938-122957 MS.gene072400:CDS 45.0%
ATCTGGCTGAGAGTAAATGG+AGG - 51337:122752-122771 None:intergenic 45.0%
ATGTGCAATGACCCAAACAC+CGG - 51337:122960-122979 None:intergenic 45.0%
ATTACCATCACCCTCACTCT+TGG + 51337:123211-123230 MS.gene072400:CDS 45.0%
CAATGGCTTGACGATACAGT+TGG + 51337:123010-123029 MS.gene072400:CDS 45.0%
CACATTACGATTCCTCTGAG+TGG + 51337:123506-123525 MS.gene072400:CDS 45.0%
CACTCAGAGGAATCGTAATG+TGG - 51337:123508-123527 None:intergenic 45.0%
CCAGAATACACCCTTTCTCT+CGG - 51337:123782-123801 None:intergenic 45.0%
CTGAGTAAATGGGACCATGT+GGG - 51337:123303-123322 None:intergenic 45.0%
GAAGAGCAGAGTGGAGAATA+AGG - 51337:123036-123055 None:intergenic 45.0%
GAATCGTAATGTGGCAATGC+CGG - 51337:123499-123518 None:intergenic 45.0%
GATAGTCACTGAATGCATGG+TGG - 51337:122991-123010 None:intergenic 45.0%
GATTCCGTAATCCCTGTCAA+CGG - 51337:123557-123576 None:intergenic 45.0%
GCCACATTATCATGCAATGG+AGG + 51337:123639-123658 MS.gene072400:CDS 45.0%
GGAATACTTGCAGTGTGCTT+TGG + 51337:123358-123377 MS.gene072400:CDS 45.0%
GGATTACGGAATCCTGAACA+AGG + 51337:123564-123583 MS.gene072400:CDS 45.0%
GGCAACGTAATAGAGGATGA+AGG - 51337:122855-122874 None:intergenic 45.0%
GTGGAATGGCTTTCTTGATC+TGG - 51337:122769-122788 None:intergenic 45.0%
GTTCCACTGCTTGTAGTCAA+TGG + 51337:123436-123455 MS.gene072400:CDS 45.0%
TACCTTAGCAACAACCCACT+AGG + 51337:123175-123194 MS.gene072400:CDS 45.0%
TCCATAAACACACACAACCC+AGG - 51337:123416-123435 None:intergenic 45.0%
TCTGAGTAAATGGGACCATG+TGG - 51337:123304-123323 None:intergenic 45.0%
TTGCATCCTTACCGGTGTTT+GGG + 51337:122946-122965 MS.gene072400:CDS 45.0%
TTTCTCTCGGTACCTTGATC+TGG - 51337:123769-123788 None:intergenic 45.0%
! AAGAGTGAGGGTGATGGTAA+TGG - 51337:123212-123231 None:intergenic 45.0%
! ACAGAGCGCTTAAAACAGTG+AGG - 51337:122791-122810 None:intergenic 45.0%
! CAAGAGAACCAGTGTTGGAA+TGG - 51337:123099-123118 None:intergenic 45.0%
! GCCTCCATTGCATGATAATG+TGG - 51337:123643-123662 None:intergenic 45.0%
!! AGATCAAGGTACCGAGAGAA+AGG + 51337:123768-123787 MS.gene072400:CDS 45.0%
!! AGGAAGGTGCTGGAAGTAAT+GGG - 51337:122879-122898 None:intergenic 45.0%
!! GATCAAGGTACCGAGAGAAA+GGG + 51337:123769-123788 MS.gene072400:CDS 45.0%
AAGGCACAAGAAGAGCAGAG+TGG - 51337:123045-123064 None:intergenic 50.0%
AGAGGATGAAGGCTATGGTG+AGG - 51337:122844-122863 None:intergenic 50.0%
CAATGACCCAAACACCGGTA+AGG - 51337:122955-122974 None:intergenic 50.0%
GAGCGCTTAAAACAGTGAGG+TGG - 51337:122788-122807 None:intergenic 50.0%
GCAACCGTTGACAGGGATTA+CGG + 51337:123550-123569 MS.gene072400:CDS 50.0%
GCCTGGGTTGTGTGTGTTTA+TGG + 51337:123412-123431 MS.gene072400:CDS 50.0%
GTTGCATCCTTACCGGTGTT+TGG + 51337:122945-122964 MS.gene072400:CDS 50.0%
TACCATCTTGCCATGGCCAA+AGG + 51337:123385-123404 MS.gene072400:CDS 50.0%
TCATGCAATGGAGGCTACCA+AGG + 51337:123648-123667 MS.gene072400:CDS 50.0%
TGGCTCTCAATGTTTCAGGC+AGG + 51337:123248-123267 MS.gene072400:CDS 50.0%
TGGGCTTTACCATCTTGCCA+TGG + 51337:123378-123397 MS.gene072400:CDS 50.0%
TGGGTCATTGCACATGAGTG+TGG + 51337:122965-122984 MS.gene072400:CDS 50.0%
TTCTCTGACTTCCTAGCCGA+AGG - 51337:122698-122717 None:intergenic 50.0%
! AACCAGTGTTGGAATGGTGG+CGG - 51337:123093-123112 None:intergenic 50.0%
! AGCTTTGGCAACCGTTGACA+GGG + 51337:123543-123562 MS.gene072400:CDS 50.0%
! CCGAGAGAAAGGGTGTATTC+TGG + 51337:123779-123798 MS.gene072400:CDS 50.0%
! GAGAACCAGTGTTGGAATGG+TGG - 51337:123096-123115 None:intergenic 50.0%
! TGGGACCATGTGGGTTAAAG+TGG - 51337:123294-123313 None:intergenic 50.0%
!! AAGGTGCTGGAAGTAATGGG+TGG - 51337:122876-122895 None:intergenic 50.0%
!! CAACACTGGTTCTCTTGAGC+GGG + 51337:123102-123121 MS.gene072400:CDS 50.0%
!! CCAACACTGGTTCTCTTGAG+CGG + 51337:123101-123120 MS.gene072400:CDS 50.0%
!! GAGGAAGGTGCTGGAAGTAA+TGG - 51337:122880-122899 None:intergenic 50.0%
!! GCTTGCCACTTTAACCCACA+TGG + 51337:123286-123305 MS.gene072400:CDS 50.0%
!! TGAGGGTGATGGTAATGGTG+AGG - 51337:123207-123226 None:intergenic 50.0%
!! TGCCTAGTGGGTTGTTGCTA+AGG - 51337:123180-123199 None:intergenic 50.0%
ACGATTCCTCTGAGTGGGAC+TGG + 51337:123512-123531 MS.gene072400:CDS 55.0%
AGAAAGAGAGAGGGCGAGGA+AGG - 51337:122895-122914 None:intergenic 55.0%
ATGGTGAGGACTCTGCCTAG+TGG - 51337:123193-123212 None:intergenic 55.0%
CACAACCCAGGCAAGACCTT+TGG - 51337:123404-123423 None:intergenic 55.0%
CACCGGTAAGGATGCAACCT+TGG - 51337:122943-122962 None:intergenic 55.0%
CATGGCCAAAGGTCTTGCCT+GGG + 51337:123396-123415 MS.gene072400:CDS 55.0%
CCGAACCTCTGTTCCTCCTT+CGG + 51337:122679-122698 MS.gene072400:CDS 55.0%
CCGAAGGAGGAACAGAGGTT+CGG - 51337:122682-122701 None:intergenic 55.0%
CCGCTCAAGAGAACCAGTGT+TGG - 51337:123104-123123 None:intergenic 55.0%
GACCTTTGGCCATGGCAAGA+TGG - 51337:123390-123409 None:intergenic 55.0%
GCAACCTTGGATAGCCCAGT+AGG - 51337:122930-122949 None:intergenic 55.0%
GCCAGGCCAAGAAAGAGAGA+GGG - 51337:122904-122923 None:intergenic 55.0%
TCCTCGCCCTCTCTCTTTCT+TGG + 51337:122895-122914 MS.gene072400:CDS 55.0%
TCTCAACCAGTCCCACTCAG+AGG - 51337:123521-123540 None:intergenic 55.0%
TCTGACTTCCTAGCCGAAGG+AGG - 51337:122695-122714 None:intergenic 55.0%
TGGTGAGGACTCTGCCTAGT+GGG - 51337:123192-123211 None:intergenic 55.0%
! GAGCTTTGGCAACCGTTGAC+AGG + 51337:123542-123561 MS.gene072400:CDS 55.0%
! TCTTGGCTGGCCCCTTTACT+TGG + 51337:123228-123247 MS.gene072400:CDS 55.0%
!! GGACTGGTTGAGAGGAGCTT+TGG + 51337:123528-123547 MS.gene072400:CDS 55.0%
!! TCTGAGTGGGACTGGTTGAG+AGG + 51337:123520-123539 MS.gene072400:CDS 55.0%
AAAGGGGCCAGCCAAGAGTG+AGG - 51337:123225-123244 None:intergenic 60.0%
AAGGGGCCAGCCAAGAGTGA+GGG - 51337:123224-123243 None:intergenic 60.0%
CCAGCCAAGAGTGAGGGTGA+TGG - 51337:123218-123237 None:intergenic 60.0%
CCAGGCAAGACCTTTGGCCA+TGG - 51337:123398-123417 None:intergenic 60.0%
CCATCACCCTCACTCTTGGC+TGG + 51337:123215-123234 MS.gene072400:CDS 60.0%
CCATGGCCAAAGGTCTTGCC+TGG + 51337:123395-123414 MS.gene072400:CDS 60.0%
CCTAGCCGAAGGAGGAACAG+AGG - 51337:122687-122706 None:intergenic 60.0%
CCTCTGTTCCTCCTTCGGCT+AGG + 51337:122684-122703 MS.gene072400:CDS 60.0%
CCTGCCTACTGGGCTATCCA+AGG + 51337:122923-122942 MS.gene072400:CDS 60.0%
CCTTGGATAGCCCAGTAGGC+AGG - 51337:122926-122945 None:intergenic 60.0%
GCCAAGAAAGAGAGAGGGCG+AGG - 51337:122899-122918 None:intergenic 60.0%
GCCCTCTCTCTTTCTTGGCC+TGG + 51337:122900-122919 MS.gene072400:CDS 60.0%
GGCCAGGCCAAGAAAGAGAG+AGG - 51337:122905-122924 None:intergenic 60.0%
!! TGTTGGAATGGTGGCGGCGA+TGG - 51337:123087-123106 None:intergenic 60.0%
CGCCGCCACCATTCCAACAC+TGG + 51337:123088-123107 MS.gene072400:CDS 65.0%
CTTGGCCTGGCCTGCCTACT+GGG + 51337:122913-122932 MS.gene072400:CDS 65.0%
GATAGCCCAGTAGGCAGGCC+AGG - 51337:122921-122940 None:intergenic 65.0%
TCTTGGCCTGGCCTGCCTAC+TGG + 51337:122912-122931 MS.gene072400:CDS 65.0%
! AGAGAGGGCGAGGAAGGTGC+TGG - 51337:122889-122908 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
51337 gene 122665 123819 122665 ID=MS.gene072400
51337 mRNA 122665 123819 122665 ID=MS.gene072400.t1;Parent=MS.gene072400
51337 exon 122665 123819 122665 ID=MS.gene072400.t1.exon1;Parent=MS.gene072400.t1
51337 CDS 122665 123819 122665 ID=cds.MS.gene072400.t1;Parent=MS.gene072400.t1
Gene Sequence

>MS.gene072400

ATGGGAGCTGGTGGCCGAACCTCTGTTCCTCCTTCGGCTAGGAAGTCAGAGAATGACACTGTGAAACGGGTGCCATTTGAGAAGCCTCCATTTACTCTCAGCCAGATCAAGAAAGCCATTCCACCTCACTGTTTTAAGCGCTCTGTTATCCATTCATTCTCCTATGTTGTTTATGACCTCACCATAGCCTTCATCCTCTATTACGTTGCCACCCATTACTTCCAGCACCTTCCTCGCCCTCTCTCTTTCTTGGCCTGGCCTGCCTACTGGGCTATCCAAGGTTGCATCCTTACCGGTGTTTGGGTCATTGCACATGAGTGTGGCCACCATGCATTCAGTGACTATCAATGGCTTGACGATACAGTTGGCCTTATTCTCCACTCTGCTCTTCTTGTGCCTTACTTTTCATGGAAATACAGCCATCGCCGCCACCATTCCAACACTGGTTCTCTTGAGCGGGATGAAGTCTTTGTTCCCAAACAGAAGTCCAGCATCTATTGGTACTCCAAATACCTTAGCAACAACCCACTAGGCAGAGTCCTCACCATTACCATCACCCTCACTCTTGGCTGGCCCCTTTACTTGGCTCTCAATGTTTCAGGCAGGCCTTATGATAGATTTGCTTGCCACTTTAACCCACATGGTCCCATTTACTCAGATCGTGAACGTCTTCAAATATATGTATCAGATGCAGGAATACTTGCAGTGTGCTTTGGGCTTTACCATCTTGCCATGGCCAAAGGTCTTGCCTGGGTTGTGTGTGTTTATGGAGTTCCACTGCTTGTAGTCAATGGATTCTTGGTGTTGATTACATTTTTGCAGCATACTCACCCGGCATTGCCACATTACGATTCCTCTGAGTGGGACTGGTTGAGAGGAGCTTTGGCAACCGTTGACAGGGATTACGGAATCCTGAACAAGGTCTTCCACAATATTACAGACACTCATGTGGCACATCACTTGTTCTCCACAATGCCACATTATCATGCAATGGAGGCTACCAAGGCAATAAAACCAATTTTGGGAGATTATTATCGGTTGGATGAAACACCATTTTACAAGGCATTATGGAGAGAAGCTAGAGAGTGTATCTATGTTGAGCCAGATCAAGGTACCGAGAGAAAGGGTGTATTCTGGTACAACAATAAGTGGTGA

Protein sequence

>MS.gene072400.t1

MGAGGRTSVPPSARKSENDTVKRVPFEKPPFTLSQIKKAIPPHCFKRSVIHSFSYVVYDLTIAFILYYVATHYFQHLPRPLSFLAWPAYWAIQGCILTGVWVIAHECGHHAFSDYQWLDDTVGLILHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSSIYWYSKYLSNNPLGRVLTITITLTLGWPLYLALNVSGRPYDRFACHFNPHGPIYSDRERLQIYVSDAGILAVCFGLYHLAMAKGLAWVVCVYGVPLLVVNGFLVLITFLQHTHPALPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGDYYRLDETPFYKALWREARECIYVEPDQGTERKGVFWYNNKW