AlfalfaGEDB | MS.gene072402

M. sativa cultivar XinJiangDaYe / MS.gene072402

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072402.t1	PNX82677.1	67.8	118	36	2	25	140	24	141	3.60E-29	137.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072402.t1	A0A2K3LVW6	67.8	118	36	2	25	140	24	141	2.6e-29	137.9

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049418	MS.gene072402	0.809107	2.23E-50	-1.69E-46
MS.gene049989	MS.gene072402	0.847702	9.78E-60	-1.69E-46
MS.gene050297	MS.gene072402	0.834278	3.29E-56	-1.69E-46
MS.gene050310	MS.gene072402	0.81871	1.70E-52	-1.69E-46
MS.gene050648	MS.gene072402	0.832909	7.22E-56	-1.69E-46
MS.gene051067	MS.gene072402	0.800437	1.44E-48	-1.69E-46
MS.gene051263	MS.gene072402	0.839009	2.05E-57	-1.69E-46
MS.gene051478	MS.gene072402	0.837856	4.06E-57	-1.69E-46
MS.gene051629	MS.gene072402	0.806661	7.38E-50	-1.69E-46
MS.gene053929	MS.gene072402	0.81519	1.05E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072402.t1	MTR_7g093220	99.153	118	1	0	23	140	22	139	5.55e-81	234

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072402.t1	AT2G42110	48.062	129	59	4	19	140	10	137	1.05e-26	97.4

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Find 0 sgRNAs with CRISPR-Local

Find 37 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTATAGATTAATTCGTCG+AGG	-	51337:133927-133946	None:intergenic	30.0%
ACGTAACTCTTTCTTCTCAT+TGG	-	51337:133643-133662	None:intergenic	35.0%
ACTATACTTTGTTGCAGACA+TGG	+	51337:134001-134020	MS.gene072402:intron	35.0%
AGAAACAAGTCATCACTCTT+GGG	+	51337:133807-133826	MS.gene072402:CDS	35.0%
CATTGATCAAACGCTTATGA+CGG	-	51337:134077-134096	None:intergenic	35.0%
TACTGTTACTACTGATGCTA+AGG	+	51337:133557-133576	MS.gene072402:CDS	35.0%
AATCTTCTGATGAGCTACTC+AGG	+	51337:133598-133617	MS.gene072402:CDS	40.0%
AGTAGAAGTAGTAGCAGAAG+TGG	-	51337:133541-133560	None:intergenic	40.0%
CAATCTGAGAGCTCTTCAAA+CGG	+	51337:133696-133715	MS.gene072402:CDS	40.0%
CAGAAACAAGTCATCACTCT+TGG	+	51337:133806-133825	MS.gene072402:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
51337	gene	133510	134107	133510	ID=MS.gene072402
51337	mRNA	133510	134107	133510	ID=MS.gene072402.t1;Parent=MS.gene072402
51337	exon	133510	133842	133510	ID=MS.gene072402.t1.exon1;Parent=MS.gene072402.t1
51337	CDS	133510	133842	133510	ID=cds.MS.gene072402.t1;Parent=MS.gene072402.t1
51337	exon	134018	134107	134018	ID=MS.gene072402.t1.exon2;Parent=MS.gene072402.t1
51337	CDS	134018	134107	134018	ID=cds.MS.gene072402.t1;Parent=MS.gene072402.t1

Gene Sequence

>MS.gene072402

ATGGAAACTAACACTGCTGTCGCAACAACCACTTCTGCTACTACTTCTACTGTTACTACTGATGCTAAGGTTCAACGAGTAACAAAGAAATCTTCTGATGAGCTACTCAGGAAGTTTGCTGAAGTGGGCACCAATGAGAAGAAAGAGTTACGTCTTATCAAACGCCGCAAAAAGATGAAGGAAAATCAATCTGAGAGCTCTTCAAACGGCACCACTGCCGTTGTGGAAAGGAGGTCGCTTTTACCGGCAACAGTGAGCCGGAAGTCAGTGCTCCGGCAGCTCAGGGTTAGAGATAACAGAAACAAGTCATCACTCTTGGGAACCATTCACAAGGTGAGACCCCAATTAACACTTTTTCTTGGTCTTTTGTTTTACACATTTTCATAAAACTTACCGTTAAATAAATCTAAATTACCTCGACGAATTAATCTATACAATTACGCGCACTGAGAGTAATTGTTTTGAATCACTTTCTTATTGTTTTGTTAATTACTATACTTTGTTGCAGACATGGCGTAGAACTGTAGAAGGTGCCTCTAGAGTTTTCATGGAAAAGCATTATAACCGTCATAAGCGTTTGATCAATGATATTGTTTAA

Protein sequence

>MS.gene072402.t1

METNTAVATTTSATTSTVTTDAKVQRVTKKSSDELLRKFAEVGTNEKKELRLIKRRKKMKENQSESSSNGTTAVVERRSLLPATVSRKSVLRQLRVRDNRNKSSLLGTIHKTWRRTVEGASRVFMEKHYNRHKRLINDIV