Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072479.t1 | XP_003626273.1 | 97.5 | 489 | 12 | 0 | 1 | 489 | 1 | 489 | 2.40E-261 | 911 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072479.t1 | Q9SVT8 | 76.2 | 478 | 109 | 2 | 2 | 474 | 3 | 480 | 1.2e-200 | 700.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072479.t1 | G7KYM3 | 97.5 | 489 | 12 | 0 | 1 | 489 | 1 | 489 | 1.7e-261 | 911.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072479 | MS.gene058775 | PPI |
| MS.gene072479 | MS.gene005054 | PPI |
| MS.gene07605 | MS.gene072479 | PPI |
| MS.gene072479 | MS.gene058774 | PPI |
| MS.gene072479 | MS.gene005052 | PPI |
| MS.gene072479 | MS.gene74897 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072479.t1 | MTR_7g113340 | 97.546 | 489 | 12 | 0 | 1 | 489 | 1 | 489 | 0.0 | 965 |
| MS.gene072479.t1 | MTR_7g098930 | 89.796 | 490 | 49 | 1 | 1 | 489 | 1 | 490 | 0.0 | 880 |
| MS.gene072479.t1 | MTR_1g045550 | 73.640 | 478 | 124 | 2 | 1 | 477 | 1 | 477 | 0.0 | 725 |
| MS.gene072479.t1 | MTR_1g079760 | 72.393 | 489 | 129 | 3 | 1 | 485 | 1 | 487 | 0.0 | 699 |
| MS.gene072479.t1 | MTR_3g463730 | 65.169 | 445 | 148 | 5 | 41 | 483 | 8 | 447 | 0.0 | 572 |
| MS.gene072479.t1 | MTR_7g115050 | 28.535 | 396 | 229 | 16 | 112 | 489 | 100 | 459 | 3.56e-23 | 102 |
| MS.gene072479.t1 | MTR_1g036410 | 26.013 | 469 | 280 | 17 | 47 | 486 | 24 | 454 | 7.10e-21 | 95.9 |
| MS.gene072479.t1 | MTR_8g074750 | 25.546 | 458 | 281 | 14 | 47 | 480 | 30 | 451 | 7.14e-18 | 86.7 |
| MS.gene072479.t1 | MTR_7g069640 | 26.287 | 369 | 231 | 9 | 123 | 485 | 129 | 462 | 4.12e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072479.t1 | AT4G13510 | 72.176 | 478 | 129 | 3 | 5 | 481 | 2 | 476 | 0.0 | 722 |
| MS.gene072479.t1 | AT3G24290 | 73.109 | 476 | 125 | 2 | 5 | 480 | 6 | 478 | 0.0 | 716 |
| MS.gene072479.t1 | AT4G28700 | 75.523 | 478 | 112 | 2 | 2 | 474 | 3 | 480 | 0.0 | 714 |
| MS.gene072479.t1 | AT3G24300 | 71.250 | 480 | 134 | 3 | 5 | 483 | 6 | 482 | 0.0 | 706 |
| MS.gene072479.t1 | AT1G64780 | 71.984 | 489 | 128 | 5 | 2 | 483 | 4 | 490 | 0.0 | 698 |
| MS.gene072479.t1 | AT2G38290 | 25.751 | 466 | 282 | 14 | 47 | 485 | 20 | 448 | 3.12e-15 | 78.6 |
| MS.gene072479.t1 | AT2G38290 | 27.049 | 366 | 218 | 11 | 135 | 488 | 7 | 335 | 1.59e-13 | 72.4 |
Find 110 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATATTGTAAAAGCTTA+TGG | 0.207812 | 7.3:+3616433 | MS.gene072479:CDS |
| TGCACATGTTGTTCAGATTT+TGG | 0.224055 | 7.3:+3616894 | MS.gene072479:CDS |
| GGTTCTCCTGATAGACCTTA+TGG | 0.231859 | 7.3:+3616838 | MS.gene072479:CDS |
| TTCATGGTGGTTGTGGTACT+TGG | 0.252134 | 7.3:+3616758 | MS.gene072479:CDS |
| CGATTGTTGCTCATTGGTTT+TGG | 0.263369 | 7.3:+3616149 | MS.gene072479:CDS |
| TACTTCAAATGCACGTCTTT+TGG | 0.271844 | 7.3:-3617076 | None:intergenic |
| TAGTGGTACTTCAGTTGTTT+TGG | 0.280248 | 7.3:+3616360 | MS.gene072479:CDS |
| TATGTGAATGAAGTTTATTC+TGG | 0.286396 | 7.3:+3616817 | MS.gene072479:CDS |
| GGGAGGTGGTGGAAGATTAT+TGG | 0.298602 | 7.3:+3616870 | MS.gene072479:CDS |
| GTACCACTATGTCCTCTAAT+TGG | 0.300969 | 7.3:-3616346 | None:intergenic |
| CATTTAGTTGGTGCTGTTGC+TGG | 0.308317 | 7.3:+3616259 | MS.gene072479:CDS |
| TATGGTCAATGGAGTGCTAT+TGG | 0.327941 | 7.3:+3616472 | MS.gene072479:CDS |
| TGCTTGGGTGAGTATTACTA+TGG | 0.328895 | 7.3:+3616924 | MS.gene072479:CDS |
| TGGCAAAAGCCCATTGAAAA+AGG | 0.329634 | 7.3:-3616030 | None:intergenic |
| TGATCAAATCTACCAATTCT+TGG | 0.336025 | 7.3:-3616307 | None:intergenic |
| AACAATCCATAAGGTCTATC+AGG | 0.338141 | 7.3:-3616844 | None:intergenic |
| CTTGAAGCTGCACAACTTCA+TGG | 0.342709 | 7.3:+3616742 | MS.gene072479:CDS |
| GCAGCTCTCACTACTTTGTT+TGG | 0.346350 | 7.3:+3616532 | MS.gene072479:CDS |
| TGTGGTGTTGTTCATTTAGT+TGG | 0.354549 | 7.3:+3616247 | MS.gene072479:CDS |
| TTGTGGATTTGTTGCTGCTT+GGG | 0.357633 | 7.3:+3616669 | MS.gene072479:CDS |
| TCATGGTGGTTGTGGTACTT+GGG | 0.382463 | 7.3:+3616759 | MS.gene072479:CDS |
| CCATGGGCTGCAATTATTTG+TGG | 0.385626 | 7.3:+3616652 | MS.gene072479:CDS |
| TTTATCCGATTGTTGCTCAT+TGG | 0.385751 | 7.3:+3616143 | MS.gene072479:CDS |
| CGAGGTAGAGATGGAAGGTT+TGG | 0.387091 | 7.3:+3616996 | MS.gene072479:CDS |
| TTACTTTGGTTTGGTTGGTA+TGG | 0.390915 | 7.3:+3616391 | MS.gene072479:CDS |
| ATTGGTTAACATAATGTTCA+TGG | 0.391374 | 7.3:-3615864 | None:intergenic |
| TGCTGATGGTTGGGGTAGTC+CGG | 0.394425 | 7.3:+3616174 | MS.gene072479:CDS |
| GGATTGTTGTTGGGAGGTGG+TGG | 0.409187 | 7.3:+3616859 | MS.gene072479:CDS |
| GTGGAGGTCGGAGGCGGAAC+AGG | 0.409952 | 7.3:-3615645 | None:intergenic |
| GGTGTTCTGTTGTGGATCCA+TGG | 0.413692 | 7.3:+3616635 | MS.gene072479:CDS |
| TTTGTGGATTTGTTGCTGCT+TGG | 0.421882 | 7.3:+3616668 | MS.gene072479:CDS |
| AATGTTCTTGATGCCGCAAT+AGG | 0.425840 | 7.3:+3615884 | MS.gene072479:CDS |
| TTTATTGAAGGACCAAGAAT+TGG | 0.431351 | 7.3:+3616295 | MS.gene072479:CDS |
| TTTGGTAAACGTATGCAAAC+AGG | 0.437183 | 7.3:+3616550 | MS.gene072479:CDS |
| GGTGAAAGTGTTCCAATTAG+AGG | 0.441579 | 7.3:+3616334 | MS.gene072479:CDS |
| GGTGAAAGTGGTAATTACTA+TGG | 0.445774 | 7.3:+3616454 | MS.gene072479:CDS |
| ATGGTCAATGGAGTGCTATT+GGG | 0.445910 | 7.3:+3616473 | MS.gene072479:CDS |
| TATGGATTGTTGTTGGGAGG+TGG | 0.448346 | 7.3:+3616856 | MS.gene072479:CDS |
| TTCATAAATTGAATTTGCTT+AGG | 0.449482 | 7.3:+3616965 | MS.gene072479:CDS |
| GATGTATGTAATGGTTTGCT+TGG | 0.461730 | 7.3:+3616589 | MS.gene072479:CDS |
| AGACCTTATGGATTGTTGTT+GGG | 0.467628 | 7.3:+3616850 | MS.gene072479:CDS |
| GCTGTCACAACTACATTGGC+TGG | 0.468245 | 7.3:+3616502 | MS.gene072479:CDS |
| TTTAACTAGCCATGGTGGAT+TGG | 0.471431 | 7.3:+3617020 | MS.gene072479:CDS |
| TTTCCGATGAAACCGTTTGA+AGG | 0.478481 | 7.3:-3615953 | None:intergenic |
| GTATGTAATGGTTTGCTTGG+TGG | 0.479792 | 7.3:+3616592 | MS.gene072479:CDS |
| GAAGCCGCCACAGATGTATT+CGG | 0.481005 | 7.3:-3615705 | None:intergenic |
| AACTGCAGGGTGTTCTGTTG+TGG | 0.482968 | 7.3:+3616627 | MS.gene072479:CDS |
| TAGACCTTATGGATTGTTGT+TGG | 0.483036 | 7.3:+3616849 | MS.gene072479:CDS |
| TGGAGTTTGCGCTGCTGCCG+AGG | 0.483187 | 7.3:-3615673 | None:intergenic |
| GTAAAAGCTTATGGTGAAAG+TGG | 0.486953 | 7.3:+3616442 | MS.gene072479:CDS |
| GTGGTAATTACTATGGTCAA+TGG | 0.487253 | 7.3:+3616461 | MS.gene072479:CDS |
| AACAATCGGATAAACTAAAC+CGG | 0.492578 | 7.3:-3616134 | None:intergenic |
| CGCTGCTGCCGAGGAGAGCG+TGG | 0.496194 | 7.3:-3615664 | None:intergenic |
| ACACCTTCAAACGGTTTCAT+CGG | 0.497352 | 7.3:+3615950 | MS.gene072479:CDS |
| GGATTGGCTTATGAGTATCA+TGG | 0.498989 | 7.3:+3617036 | MS.gene072479:CDS |
| TTGAAGGTGTTCCAAAAGCT+AGG | 0.502612 | 7.3:-3615937 | None:intergenic |
| GACGTGCATTTGAAGTATGA+TGG | 0.505539 | 7.3:+3617082 | MS.gene072479:CDS |
| GTCTTCACCCGAGGTAGAGA+TGG | 0.506405 | 7.3:+3616987 | MS.gene072479:CDS |
| CAAGGTAAGCTGAGAAGAGA+AGG | 0.507589 | 7.3:-3615781 | None:intergenic |
| GATTGGCTTATGAGTATCAT+GGG | 0.514594 | 7.3:+3617037 | MS.gene072479:CDS |
| GAGAGCGTGGAGGTCGGAGG+CGG | 0.520134 | 7.3:-3615651 | None:intergenic |
| CATGGTGGTTGTGGTACTTG+GGG | 0.523447 | 7.3:+3616760 | MS.gene072479:CDS |
| AAACCTTCCATCTCTACCTC+GGG | 0.523781 | 7.3:-3616994 | None:intergenic |
| TCCGACCTCCACGCTCTCCT+CGG | 0.524571 | 7.3:+3615656 | MS.gene072479:CDS |
| GTGTTCTGTTGTGGATCCAT+GGG | 0.527050 | 7.3:+3616636 | MS.gene072479:CDS |
| AGTGTTAGTGATGTATGTAA+TGG | 0.532742 | 7.3:+3616580 | MS.gene072479:CDS |
| AACGTATGCAAACAGGCCAT+TGG | 0.534415 | 7.3:+3616557 | MS.gene072479:CDS |
| CAAAACCAATGAGCAACAAT+CGG | 0.537973 | 7.3:-3616148 | None:intergenic |
| GTCGATGAATTTGTTTGCGA+CGG | 0.538058 | 7.3:-3615732 | None:intergenic |
| CCTCCCAACAACAATCCATA+AGG | 0.542714 | 7.3:-3616853 | None:intergenic |
| GGTTTGGATTTAACTAGCCA+TGG | 0.543424 | 7.3:+3617012 | MS.gene072479:CDS |
| GCACAACTTCATGGTGGTTG+TGG | 0.547365 | 7.3:+3616751 | MS.gene072479:CDS |
| TGTGATACCTGCTGCAGCAA+TGG | 0.548951 | 7.3:-3616050 | None:intergenic |
| TGAAGGTGTTCCAAAAGCTA+GGG | 0.557787 | 7.3:-3615936 | None:intergenic |
| CCACAAATAATTGCAGCCCA+TGG | 0.565527 | 7.3:-3616652 | None:intergenic |
| CATAGCAAAACCTAATTGCA+TGG | 0.568771 | 7.3:-3615810 | None:intergenic |
| CGTAATCAAAAGATTGTGAA+GGG | 0.572177 | 7.3:-3616000 | None:intergenic |
| ATGGTGGTTGTGGTACTTGG+GGG | 0.572938 | 7.3:+3616761 | MS.gene072479:CDS |
| CCTTATGGATTGTTGTTGGG+AGG | 0.579167 | 7.3:+3616853 | MS.gene072479:CDS |
| ATTGGTAGATTTGATCATGA+GGG | 0.582391 | 7.3:+3616313 | MS.gene072479:CDS |
| GATGTATTCGGCAGCAGCAG+TGG | 0.582784 | 7.3:-3615693 | None:intergenic |
| GTTCTTGATGCCGCAATAGG+TGG | 0.583754 | 7.3:+3615887 | MS.gene072479:CDS |
| GCCGAGGAGAGCGTGGAGGT+CGG | 0.585250 | 7.3:-3615657 | None:intergenic |
| AATTGGTAGATTTGATCATG+AGG | 0.587107 | 7.3:+3616312 | MS.gene072479:CDS |
| TGAAGTTGTGCAGCTTCAAG+AGG | 0.588771 | 7.3:-3616739 | None:intergenic |
| GTAAGTGTTGTCGACAGCAT+AGG | 0.594110 | 7.3:-3615759 | None:intergenic |
| GAGGAGAGCGTGGAGGTCGG+AGG | 0.594655 | 7.3:-3615654 | None:intergenic |
| ACAATATTAAGAAAAGAACC+AGG | 0.596151 | 7.3:-3616421 | None:intergenic |
| CAAACCTTCCATCTCTACCT+CGG | 0.602079 | 7.3:-3616995 | None:intergenic |
| CCGTAATCAAAAGATTGTGA+AGG | 0.603065 | 7.3:-3616001 | None:intergenic |
| TCACCCGAGGTAGAGATGGA+AGG | 0.608823 | 7.3:+3616991 | MS.gene072479:CDS |
| TATTGCGGCATCAAGAACAT+TGG | 0.610961 | 7.3:-3615882 | None:intergenic |
| GGCTTATGAGTATCATGGGG+AGG | 0.611944 | 7.3:+3617041 | MS.gene072479:CDS |
| GACAGCTGTCACAACTACAT+TGG | 0.613672 | 7.3:+3616498 | MS.gene072479:CDS |
| ATACATCACTAACACTCCAA+TGG | 0.614445 | 7.3:-3616573 | None:intergenic |
| GCTGCAGCAGGTATCACAAG+TGG | 0.627953 | 7.3:+3616055 | MS.gene072479:CDS |
| TTGGATTTAACTAGCCATGG+TGG | 0.630060 | 7.3:+3617015 | MS.gene072479:CDS |
| CAATATTAAGAAAAGAACCA+GGG | 0.637822 | 7.3:-3616420 | None:intergenic |
| GTCAATGGAGTGCTATTGGG+AGG | 0.640296 | 7.3:+3616476 | MS.gene072479:CDS |
| GTTCCAATTAGAGGACATAG+TGG | 0.643396 | 7.3:+3616343 | MS.gene072479:CDS |
| GCTTGGGTGAGTATTACTAT+GGG | 0.643839 | 7.3:+3616925 | MS.gene072479:CDS |
| GGAACAGGTGAAAGTAGCCA+TGG | 0.643886 | 7.3:-3615630 | None:intergenic |
| TGCTGCCGAGGAGAGCGTGG+AGG | 0.655939 | 7.3:-3615661 | None:intergenic |
| ATGGTTGGGGTAGTCCGGTG+CGG | 0.658541 | 7.3:+3616179 | MS.gene072479:CDS |
| GCTGCTGCCGAATACATCTG+TGG | 0.675707 | 7.3:+3615698 | MS.gene072479:CDS |
| TTTGCTTAGGTCTTCACCCG+AGG | 0.680243 | 7.3:+3616978 | MS.gene072479:CDS |
| GCTGCCGAATACATCTGTGG+CGG | 0.687449 | 7.3:+3615701 | MS.gene072479:CDS |
| ACTCATAAGCCAATCCACCA+TGG | 0.688384 | 7.3:-3617029 | None:intergenic |
| GAAGCTGCACAACTTCATGG+TGG | 0.721100 | 7.3:+3616745 | MS.gene072479:CDS |
| ATTGGCTTATGAGTATCATG+GGG | 0.743279 | 7.3:+3617038 | MS.gene072479:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAATATTGTAAAAGCTTA+TGG | + | chr7.3:3616433-3616452 | MS.gene072479:CDS | 20.0% |
| !!! | ATTTATTCATCGTTTTTAAC+CGG | + | chr7.3:3616115-3616134 | MS.gene072479:CDS | 20.0% |
| !!! | TTCATAAATTGAATTTGCTT+AGG | + | chr7.3:3616965-3616984 | MS.gene072479:CDS | 20.0% |
| ! | ACAATATTAAGAAAAGAACC+AGG | - | chr7.3:3616424-3616443 | None:intergenic | 25.0% |
| ! | ATTGGTTAACATAATGTTCA+TGG | - | chr7.3:3615867-3615886 | None:intergenic | 25.0% |
| ! | CAATATTAAGAAAAGAACCA+GGG | - | chr7.3:3616423-3616442 | None:intergenic | 25.0% |
| ! | TATGTGAATGAAGTTTATTC+TGG | + | chr7.3:3616817-3616836 | MS.gene072479:CDS | 25.0% |
| !!! | GGCATTTTTTTCTATGTTTT+TGG | + | chr7.3:3615908-3615927 | MS.gene072479:CDS | 25.0% |
| !!! | TTCATCGGAAAACATTTTTT+TGG | + | chr7.3:3615965-3615984 | MS.gene072479:CDS | 25.0% |
| !!! | TTTTGGGAACTTTTTTACTT+TGG | + | chr7.3:3616377-3616396 | MS.gene072479:CDS | 25.0% |
| AACAATCGGATAAACTAAAC+CGG | - | chr7.3:3616137-3616156 | None:intergenic | 30.0% | |
| AATTGGTAGATTTGATCATG+AGG | + | chr7.3:3616312-3616331 | MS.gene072479:CDS | 30.0% | |
| AGTGTTAGTGATGTATGTAA+TGG | + | chr7.3:3616580-3616599 | MS.gene072479:CDS | 30.0% | |
| ATTGGTAGATTTGATCATGA+GGG | + | chr7.3:3616313-3616332 | MS.gene072479:CDS | 30.0% | |
| CGTAATCAAAAGATTGTGAA+GGG | - | chr7.3:3616003-3616022 | None:intergenic | 30.0% | |
| TGATCAAATCTACCAATTCT+TGG | - | chr7.3:3616310-3616329 | None:intergenic | 30.0% | |
| TTTATTGAAGGACCAAGAAT+TGG | + | chr7.3:3616295-3616314 | MS.gene072479:CDS | 30.0% | |
| ! | CATAATGTTCATGGTGTTTT+TGG | - | chr7.3:3615858-3615877 | None:intergenic | 30.0% |
| !! | CCTTCACAATCTTTTGATTA+CGG | + | chr7.3:3616001-3616020 | MS.gene072479:CDS | 30.0% |
| !! | CTTCACAATCTTTTGATTAC+GGG | + | chr7.3:3616002-3616021 | MS.gene072479:CDS | 30.0% |
| !! | GAAAATCTTTTGTTTGGTTC+TGG | + | chr7.3:3616205-3616224 | MS.gene072479:CDS | 30.0% |
| !!! | CTTTTTTACTTTGGTTTGGT+TGG | + | chr7.3:3616386-3616405 | MS.gene072479:CDS | 30.0% |
| !!! | GGAACTTTTTTACTTTGGTT+TGG | + | chr7.3:3616382-3616401 | MS.gene072479:CDS | 30.0% |
| AACAATCCATAAGGTCTATC+AGG | - | chr7.3:3616847-3616866 | None:intergenic | 35.0% | |
| ATACATCACTAACACTCCAA+TGG | - | chr7.3:3616576-3616595 | None:intergenic | 35.0% | |
| CAAAACCAATGAGCAACAAT+CGG | - | chr7.3:3616151-3616170 | None:intergenic | 35.0% | |
| CATAGCAAAACCTAATTGCA+TGG | - | chr7.3:3615813-3615832 | None:intergenic | 35.0% | |
| CCGTAATCAAAAGATTGTGA+AGG | - | chr7.3:3616004-3616023 | None:intergenic | 35.0% | |
| CTAATTGCATGGCAAAAACA+AGG | - | chr7.3:3615802-3615821 | None:intergenic | 35.0% | |
| GAAAAAAATGCCACCTATTG+CGG | - | chr7.3:3615900-3615919 | None:intergenic | 35.0% | |
| GGTGAAAGTGGTAATTACTA+TGG | + | chr7.3:3616454-3616473 | MS.gene072479:CDS | 35.0% | |
| GTAAAAGCTTATGGTGAAAG+TGG | + | chr7.3:3616442-3616461 | MS.gene072479:CDS | 35.0% | |
| GTGGTAATTACTATGGTCAA+TGG | + | chr7.3:3616461-3616480 | MS.gene072479:CDS | 35.0% | |
| TTTATCCGATTGTTGCTCAT+TGG | + | chr7.3:3616143-3616162 | MS.gene072479:CDS | 35.0% | |
| TTTGGTAAACGTATGCAAAC+AGG | + | chr7.3:3616550-3616569 | MS.gene072479:CDS | 35.0% | |
| ! | AGACCTTATGGATTGTTGTT+GGG | + | chr7.3:3616850-3616869 | MS.gene072479:CDS | 35.0% |
| ! | ATTGGCTTATGAGTATCATG+GGG | + | chr7.3:3617038-3617057 | MS.gene072479:CDS | 35.0% |
| ! | CGGTCTGAAAATCTTTTGTT+TGG | + | chr7.3:3616199-3616218 | MS.gene072479:CDS | 35.0% |
| ! | TACTTCAAATGCACGTCTTT+TGG | - | chr7.3:3617079-3617098 | None:intergenic | 35.0% |
| ! | TAGACCTTATGGATTGTTGT+TGG | + | chr7.3:3616849-3616868 | MS.gene072479:CDS | 35.0% |
| ! | TAGTGGTACTTCAGTTGTTT+TGG | + | chr7.3:3616360-3616379 | MS.gene072479:CDS | 35.0% |
| ! | TGCACATGTTGTTCAGATTT+TGG | + | chr7.3:3616894-3616913 | MS.gene072479:CDS | 35.0% |
| !! | AGTGGTACTTCAGTTGTTTT+GGG | + | chr7.3:3616361-3616380 | MS.gene072479:CDS | 35.0% |
| !! | GATGTATGTAATGGTTTGCT+TGG | + | chr7.3:3616589-3616608 | MS.gene072479:CDS | 35.0% |
| !! | GATTGGCTTATGAGTATCAT+GGG | + | chr7.3:3617037-3617056 | MS.gene072479:CDS | 35.0% |
| !! | TGTGGTGTTGTTCATTTAGT+TGG | + | chr7.3:3616247-3616266 | MS.gene072479:CDS | 35.0% |
| !! | TTACTTTGGTTTGGTTGGTA+TGG | + | chr7.3:3616391-3616410 | MS.gene072479:CDS | 35.0% |
| !!! | ACGGGTTTTTCCTTTTTCAA+TGG | + | chr7.3:3616020-3616039 | MS.gene072479:CDS | 35.0% |
| !!! | AGATTTTGGCTATTGTTGCT+TGG | + | chr7.3:3616908-3616927 | MS.gene072479:CDS | 35.0% |
| !!! | CGGGTTTTTCCTTTTTCAAT+GGG | + | chr7.3:3616021-3616040 | MS.gene072479:CDS | 35.0% |
| !!! | CTTGTTTTTGCCATGCAATT+AGG | + | chr7.3:3615800-3615819 | MS.gene072479:CDS | 35.0% |
| !!! | GATTTTGGCTATTGTTGCTT+GGG | + | chr7.3:3616909-3616928 | MS.gene072479:CDS | 35.0% |
| !!! | GTTATTGATTTTGCTGGTTG+TGG | + | chr7.3:3616229-3616248 | MS.gene072479:CDS | 35.0% |
| !!! | TCTGGTGTTATTGATTTTGC+TGG | + | chr7.3:3616223-3616242 | MS.gene072479:CDS | 35.0% |
| !!! | TTTTGGGGTGCTTTTATTGA+AGG | + | chr7.3:3616283-3616302 | MS.gene072479:CDS | 35.0% |
| AATGTTCTTGATGCCGCAAT+AGG | + | chr7.3:3615884-3615903 | MS.gene072479:CDS | 40.0% | |
| ACACCTTCAAACGGTTTCAT+CGG | + | chr7.3:3615950-3615969 | MS.gene072479:CDS | 40.0% | |
| GCTTGGGTGAGTATTACTAT+GGG | + | chr7.3:3616925-3616944 | MS.gene072479:CDS | 40.0% | |
| GGTTTGGATTTAACTAGCCA+TGG | + | chr7.3:3617012-3617031 | MS.gene072479:CDS | 40.0% | |
| GTACCACTATGTCCTCTAAT+TGG | - | chr7.3:3616349-3616368 | None:intergenic | 40.0% | |
| GTTCCAATTAGAGGACATAG+TGG | + | chr7.3:3616343-3616362 | MS.gene072479:CDS | 40.0% | |
| TATTGCGGCATCAAGAACAT+TGG | - | chr7.3:3615885-3615904 | None:intergenic | 40.0% | |
| TGCTTGGGTGAGTATTACTA+TGG | + | chr7.3:3616924-3616943 | MS.gene072479:CDS | 40.0% | |
| TGGCAAAAGCCCATTGAAAA+AGG | - | chr7.3:3616033-3616052 | None:intergenic | 40.0% | |
| TTGGATTTAACTAGCCATGG+TGG | + | chr7.3:3617015-3617034 | MS.gene072479:CDS | 40.0% | |
| TTTCCGATGAAACCGTTTGA+AGG | - | chr7.3:3615956-3615975 | None:intergenic | 40.0% | |
| ! | AAAAGATTTTCAGACCGCAC+CGG | - | chr7.3:3616196-3616215 | None:intergenic | 40.0% |
| ! | ATGGTCAATGGAGTGCTATT+GGG | + | chr7.3:3616473-3616492 | MS.gene072479:CDS | 40.0% |
| ! | GTCGATGAATTTGTTTGCGA+CGG | - | chr7.3:3615735-3615754 | None:intergenic | 40.0% |
| ! | GTTTTGCTGCTATAACTGCA+GGG | + | chr7.3:3616614-3616633 | MS.gene072479:CDS | 40.0% |
| ! | TATGGTCAATGGAGTGCTAT+TGG | + | chr7.3:3616472-3616491 | MS.gene072479:CDS | 40.0% |
| !! | GGATTGGCTTATGAGTATCA+TGG | + | chr7.3:3617036-3617055 | MS.gene072479:CDS | 40.0% |
| !! | GGTGAAAGTGTTCCAATTAG+AGG | + | chr7.3:3616334-3616353 | MS.gene072479:CDS | 40.0% |
| !! | GTATGTAATGGTTTGCTTGG+TGG | + | chr7.3:3616592-3616611 | MS.gene072479:CDS | 40.0% |
| !! | GTTGCTGCTTGGGTTTTAAT+TGG | + | chr7.3:3616679-3616698 | MS.gene072479:CDS | 40.0% |
| !! | TGAAGGTGTTCCAAAAGCTA+GGG | - | chr7.3:3615939-3615958 | None:intergenic | 40.0% |
| !! | TTGAAGGTGTTCCAAAAGCT+AGG | - | chr7.3:3615940-3615959 | None:intergenic | 40.0% |
| !! | TTGTGGATTTGTTGCTGCTT+GGG | + | chr7.3:3616669-3616688 | MS.gene072479:CDS | 40.0% |
| !! | TTTAACTAGCCATGGTGGAT+TGG | + | chr7.3:3617020-3617039 | MS.gene072479:CDS | 40.0% |
| !! | TTTGTGGATTTGTTGCTGCT+TGG | + | chr7.3:3616668-3616687 | MS.gene072479:CDS | 40.0% |
| !!! | CGATTGTTGCTCATTGGTTT+TGG | + | chr7.3:3616149-3616168 | MS.gene072479:CDS | 40.0% |
| !!! | GCTTTTGGAACACCTTCAAA+CGG | + | chr7.3:3615941-3615960 | MS.gene072479:CDS | 40.0% |
| !!! | GTTTTTGGCACGAATAGAAC+CGG | - | chr7.3:3615843-3615862 | None:intergenic | 40.0% |
| !!! | TTTGGTTTTGCCCTAGCTTT+TGG | + | chr7.3:3615926-3615945 | MS.gene072479:CDS | 40.0% |
| AAACCTTCCATCTCTACCTC+GGG | - | chr7.3:3616997-3617016 | None:intergenic | 45.0% | |
| AACGTATGCAAACAGGCCAT+TGG | + | chr7.3:3616557-3616576 | MS.gene072479:CDS | 45.0% | |
| ACTCATAAGCCAATCCACCA+TGG | - | chr7.3:3617032-3617051 | None:intergenic | 45.0% | |
| CAAACCTTCCATCTCTACCT+CGG | - | chr7.3:3616998-3617017 | None:intergenic | 45.0% | |
| CAAGGTAAGCTGAGAAGAGA+AGG | - | chr7.3:3615784-3615803 | None:intergenic | 45.0% | |
| CCACAAATAATTGCAGCCCA+TGG | - | chr7.3:3616655-3616674 | None:intergenic | 45.0% | |
| CCTCCCAACAACAATCCATA+AGG | - | chr7.3:3616856-3616875 | None:intergenic | 45.0% | |
| CTTGAAGCTGCACAACTTCA+TGG | + | chr7.3:3616742-3616761 | MS.gene072479:CDS | 45.0% | |
| GACAGCTGTCACAACTACAT+TGG | + | chr7.3:3616498-3616517 | MS.gene072479:CDS | 45.0% | |
| GCAGCTCTCACTACTTTGTT+TGG | + | chr7.3:3616532-3616551 | MS.gene072479:CDS | 45.0% | |
| GGTTCTCCTGATAGACCTTA+TGG | + | chr7.3:3616838-3616857 | MS.gene072479:CDS | 45.0% | |
| GTGTTCTGTTGTGGATCCAT+GGG | + | chr7.3:3616636-3616655 | MS.gene072479:CDS | 45.0% | |
| TCATGGTGGTTGTGGTACTT+GGG | + | chr7.3:3616759-3616778 | MS.gene072479:CDS | 45.0% | |
| TGAAGTTGTGCAGCTTCAAG+AGG | - | chr7.3:3616742-3616761 | None:intergenic | 45.0% | |
| TTCATGGTGGTTGTGGTACT+TGG | + | chr7.3:3616758-3616777 | MS.gene072479:CDS | 45.0% | |
| ! | CCATGGGCTGCAATTATTTG+TGG | + | chr7.3:3616652-3616671 | MS.gene072479:CDS | 45.0% |
| ! | CCTTATGGATTGTTGTTGGG+AGG | + | chr7.3:3616853-3616872 | MS.gene072479:CDS | 45.0% |
| ! | GGTTTTGCTGCTATAACTGC+AGG | + | chr7.3:3616613-3616632 | MS.gene072479:CDS | 45.0% |
| ! | GTAAGTGTTGTCGACAGCAT+AGG | - | chr7.3:3615762-3615781 | None:intergenic | 45.0% |
| ! | TATGGATTGTTGTTGGGAGG+TGG | + | chr7.3:3616856-3616875 | MS.gene072479:CDS | 45.0% |
| ! | TTTTGGTCTGCTGATGGTTG+GGG | + | chr7.3:3616166-3616185 | MS.gene072479:CDS | 45.0% |
| !! | CATTTAGTTGGTGCTGTTGC+TGG | + | chr7.3:3616259-3616278 | MS.gene072479:CDS | 45.0% |
| !! | GGTTTTGCTATGCTTTGTGC+CGG | + | chr7.3:3615821-3615840 | MS.gene072479:CDS | 45.0% |
| !! | GTTTTGGTCTGCTGATGGTT+GGG | + | chr7.3:3616165-3616184 | MS.gene072479:CDS | 45.0% |
| !!! | CATTGGTTTTGGTCTGCTGA+TGG | + | chr7.3:3616160-3616179 | MS.gene072479:CDS | 45.0% |
| !!! | GGTTGGTATGGTTTTAACCC+TGG | + | chr7.3:3616403-3616422 | MS.gene072479:CDS | 45.0% |
| !!! | TGGTGCTGTTGCTGGTTTTT+GGG | + | chr7.3:3616267-3616286 | MS.gene072479:CDS | 45.0% |
| !!! | TTGGTGCTGTTGCTGGTTTT+TGG | + | chr7.3:3616266-3616285 | MS.gene072479:CDS | 45.0% |
| ATGGTGGTTGTGGTACTTGG+GGG | + | chr7.3:3616761-3616780 | MS.gene072479:CDS | 50.0% | |
| CATGGTGGTTGTGGTACTTG+GGG | + | chr7.3:3616760-3616779 | MS.gene072479:CDS | 50.0% | |
| CGAGGTAGAGATGGAAGGTT+TGG | + | chr7.3:3616996-3617015 | MS.gene072479:CDS | 50.0% | |
| GAAGCCGCCACAGATGTATT+CGG | - | chr7.3:3615708-3615727 | None:intergenic | 50.0% | |
| GAAGCTGCACAACTTCATGG+TGG | + | chr7.3:3616745-3616764 | MS.gene072479:CDS | 50.0% | |
| GCACAACTTCATGGTGGTTG+TGG | + | chr7.3:3616751-3616770 | MS.gene072479:CDS | 50.0% | |
| GCTGTCACAACTACATTGGC+TGG | + | chr7.3:3616502-3616521 | MS.gene072479:CDS | 50.0% | |
| GGCTTATGAGTATCATGGGG+AGG | + | chr7.3:3617041-3617060 | MS.gene072479:CDS | 50.0% | |
| GGTGTTCTGTTGTGGATCCA+TGG | + | chr7.3:3616635-3616654 | MS.gene072479:CDS | 50.0% | |
| GTTCTTGATGCCGCAATAGG+TGG | + | chr7.3:3615887-3615906 | MS.gene072479:CDS | 50.0% | |
| TGTGATACCTGCTGCAGCAA+TGG | - | chr7.3:3616053-3616072 | None:intergenic | 50.0% | |
| TTTGCTTAGGTCTTCACCCG+AGG | + | chr7.3:3616978-3616997 | MS.gene072479:CDS | 50.0% | |
| ! | AACTGCAGGGTGTTCTGTTG+TGG | + | chr7.3:3616627-3616646 | MS.gene072479:CDS | 50.0% |
| ! | GTCAATGGAGTGCTATTGGG+AGG | + | chr7.3:3616476-3616495 | MS.gene072479:CDS | 50.0% |
| !! | GGGAGGTGGTGGAAGATTAT+TGG | + | chr7.3:3616870-3616889 | MS.gene072479:CDS | 50.0% |
| !! | GGTTTTGGTCTGCTGATGGT+TGG | + | chr7.3:3616164-3616183 | MS.gene072479:CDS | 50.0% |
| !!! | GGTGCTGTTGCTGGTTTTTG+GGG | + | chr7.3:3616268-3616287 | MS.gene072479:CDS | 50.0% |
| GATGTATTCGGCAGCAGCAG+TGG | - | chr7.3:3615696-3615715 | None:intergenic | 55.0% | |
| GCTGCAGCAGGTATCACAAG+TGG | + | chr7.3:3616055-3616074 | MS.gene072479:CDS | 55.0% | |
| GCTGCCGAATACATCTGTGG+CGG | + | chr7.3:3615701-3615720 | MS.gene072479:CDS | 55.0% | |
| GCTGCTGCCGAATACATCTG+TGG | + | chr7.3:3615698-3615717 | MS.gene072479:CDS | 55.0% | |
| GTCTTCACCCGAGGTAGAGA+TGG | + | chr7.3:3616987-3617006 | MS.gene072479:CDS | 55.0% | |
| TCACCCGAGGTAGAGATGGA+AGG | + | chr7.3:3616991-3617010 | MS.gene072479:CDS | 55.0% | |
| TGCTGATGGTTGGGGTAGTC+CGG | + | chr7.3:3616174-3616193 | MS.gene072479:CDS | 55.0% | |
| ! | GCTTTTGCCATTGCTGCAGC+AGG | + | chr7.3:3616043-3616062 | MS.gene072479:CDS | 55.0% |
| ! | GGATTGTTGTTGGGAGGTGG+TGG | + | chr7.3:3616859-3616878 | MS.gene072479:CDS | 55.0% |
| ATGGTTGGGGTAGTCCGGTG+CGG | + | chr7.3:3616179-3616198 | MS.gene072479:CDS | 60.0% | |
| TCCGACCTCCACGCTCTCCT+CGG | + | chr7.3:3615656-3615675 | MS.gene072479:CDS | 65.0% | |
| TGGAGTTTGCGCTGCTGCCG+AGG | - | chr7.3:3615676-3615695 | None:intergenic | 65.0% | |
| GTGGAGGTCGGAGGCGGAAC+AGG | - | chr7.3:3615648-3615667 | None:intergenic | 70.0% | |
| ! | GAGAGCGTGGAGGTCGGAGG+CGG | - | chr7.3:3615654-3615673 | None:intergenic | 70.0% |
| ! | GAGGAGAGCGTGGAGGTCGG+AGG | - | chr7.3:3615657-3615676 | None:intergenic | 70.0% |
| ! | GCCGAGGAGAGCGTGGAGGT+CGG | - | chr7.3:3615660-3615679 | None:intergenic | 70.0% |
| ! | TGCTGCCGAGGAGAGCGTGG+AGG | - | chr7.3:3615664-3615683 | None:intergenic | 70.0% |
| CGCTGCTGCCGAGGAGAGCG+TGG | - | chr7.3:3615667-3615686 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 3615632 | 3617101 | 3615632 | ID=MS.gene072479 |
| chr7.3 | mRNA | 3615632 | 3617101 | 3615632 | ID=MS.gene072479.t1;Parent=MS.gene072479 |
| chr7.3 | exon | 3615632 | 3617101 | 3615632 | ID=MS.gene072479.t1.exon1;Parent=MS.gene072479.t1 |
| chr7.3 | CDS | 3615632 | 3617101 | 3615632 | ID=cds.MS.gene072479.t1;Parent=MS.gene072479.t1 |
| Gene Sequence |
| Protein sequence |
