Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072910.t1 | XP_003603420.1 | 98.2 | 218 | 4 | 0 | 50 | 267 | 113 | 330 | 1.90E-111 | 412.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072910.t1 | Q8H0V5 | 58.7 | 167 | 69 | 0 | 94 | 260 | 185 | 351 | 1.4e-46 | 188.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072910.t1 | G7JB43 | 98.2 | 218 | 4 | 0 | 50 | 267 | 113 | 330 | 1.4e-111 | 412.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene072910.t1 | TF | HB-other |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050404 | MS.gene072910 | 0.829213 | 5.84E-55 | -1.69E-46 |
| MS.gene050529 | MS.gene072910 | 0.800166 | 1.64E-48 | -1.69E-46 |
| MS.gene050812 | MS.gene072910 | 0.811901 | 5.55E-51 | -1.69E-46 |
| MS.gene051171 | MS.gene072910 | 0.829235 | 5.76E-55 | -1.69E-46 |
| MS.gene051242 | MS.gene072910 | 0.82196 | 3.06E-53 | -1.69E-46 |
| MS.gene051244 | MS.gene072910 | 0.812952 | 3.27E-51 | -1.69E-46 |
| MS.gene053330 | MS.gene072910 | 0.815478 | 9.06E-52 | -1.69E-46 |
| MS.gene055412 | MS.gene072910 | 0.804187 | 2.44E-49 | -1.69E-46 |
| MS.gene056633 | MS.gene072910 | 0.825619 | 4.25E-54 | -1.69E-46 |
| MS.gene056664 | MS.gene072910 | 0.843687 | 1.20E-58 | -1.69E-46 |
| MS.gene056796 | MS.gene072910 | 0.817033 | 4.07E-52 | -1.69E-46 |
| MS.gene057124 | MS.gene072910 | 0.802996 | 4.30E-49 | -1.69E-46 |
| MS.gene057196 | MS.gene072910 | 0.807911 | 4.01E-50 | -1.69E-46 |
| MS.gene058233 | MS.gene072910 | 0.862751 | 4.06E-64 | -1.69E-46 |
| MS.gene058276 | MS.gene072910 | 0.852093 | 5.79E-61 | -1.69E-46 |
| MS.gene058746 | MS.gene072910 | 0.846927 | 1.60E-59 | -1.69E-46 |
| MS.gene059894 | MS.gene072910 | 0.808501 | 3.00E-50 | -1.69E-46 |
| MS.gene060407 | MS.gene072910 | 0.808605 | 2.85E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072910.t1 | MTR_3g107530 | 93.727 | 271 | 11 | 1 | 3 | 267 | 60 | 330 | 3.17e-170 | 473 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072910.t1 | AT5G11270 | 48.659 | 261 | 125 | 1 | 9 | 260 | 91 | 351 | 5.93e-67 | 212 |
Find 46 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCTCCGGGCGTAGTTTC+AGG | 0.263805 | 3.4:+93390896 | None:intergenic |
| GGTGATACTGCTGATGGTTT+AGG | 0.275225 | 3.4:+93390917 | None:intergenic |
| TTCTCGAAAGAGATTGAAAA+AGG | 0.338696 | 3.4:-93390780 | MS.gene072910:CDS |
| GATCATGCTCATGCAGAATC+TGG | 0.343580 | 3.4:-93390851 | MS.gene072910:CDS |
| GCTGATGGTTTAGGTTCATC+AGG | 0.425177 | 3.4:+93390926 | None:intergenic |
| TTCATGACATGCAACAGAAT+TGG | 0.427701 | 3.4:-93390805 | MS.gene072910:CDS |
| TTCTTTATGAAAAGAATCTC+CGG | 0.439788 | 3.4:+93390883 | None:intergenic |
| CGCGGAGAACAGTTATTAAG+TGG | 0.452000 | 3.4:-93389679 | MS.gene072910:CDS |
| TTCTGTTGCATGTCATGAAT+AGG | 0.457484 | 3.4:+93390809 | None:intergenic |
| TTGGCTAGAGCATTGAAAAC+TGG | 0.460688 | 3.4:-93392047 | MS.gene072910:CDS |
| ATAGGTAAGTTAGACTTCTT+CGG | 0.466152 | 3.4:+93390827 | None:intergenic |
| CGTGAGTTGGAAGGTGTGTT+GGG | 0.479759 | 3.4:-93392194 | MS.gene072910:CDS |
| TCATTAGCAGACTGCTGGTA+AGG | 0.483094 | 3.4:+93389611 | None:intergenic |
| TTGTTTCATTAGCAGACTGC+TGG | 0.483884 | 3.4:+93389606 | None:intergenic |
| TGTTTGAAAAGCAACTCAAA+TGG | 0.492775 | 3.4:+93392311 | None:intergenic |
| ATTCGCTGAAGCTTAGAACT+TGG | 0.492933 | 3.4:-93392082 | MS.gene072910:CDS |
| AAAGGCTTACACTTAGTTTG+CGG | 0.505407 | 3.4:+93392021 | None:intergenic |
| TGCTTTGTTAGAACGTGAGT+TGG | 0.513640 | 3.4:-93392207 | MS.gene072910:CDS |
| CTCAGCATCAGAAGACTTGG+TGG | 0.517452 | 3.4:+93390959 | None:intergenic |
| AGCTCTATCAAGACAGAGCT+CGG | 0.525713 | 3.4:+93391009 | None:intergenic |
| ACGTGAGTTGGAAGGTGTGT+TGG | 0.531369 | 3.4:-93392195 | MS.gene072910:CDS |
| AGACAAACGTGCCGAGGAGG+GGG | 0.542683 | 3.4:-93389651 | MS.gene072910:CDS |
| GTTTCAGGTGATACTGCTGA+TGG | 0.555775 | 3.4:+93390911 | None:intergenic |
| AGGCTCAGCATCAGAAGACT+TGG | 0.557597 | 3.4:+93390956 | None:intergenic |
| TGGTAAGGAAGACGATGCTC+TGG | 0.560826 | 3.4:+93389626 | None:intergenic |
| AAATTGACTCATGTTACAGA+GGG | 0.567201 | 3.4:-93392350 | MS.gene072910:CDS |
| AACTTGGCAATTGAATACAT+TGG | 0.575518 | 3.4:-93392066 | MS.gene072910:CDS |
| AGCATCAGAAGACTTGGTGG+AGG | 0.576518 | 3.4:+93390962 | None:intergenic |
| TAGGTTCATCAGGAATCGAT+AGG | 0.584575 | 3.4:+93390936 | None:intergenic |
| TCTTTATGAAAAGAATCTCC+GGG | 0.584998 | 3.4:+93390884 | None:intergenic |
| GTATCACCTGAAACTACGCC+CGG | 0.589871 | 3.4:-93390902 | MS.gene072910:CDS |
| GAAGACAAACGTGCCGAGGA+GGG | 0.595141 | 3.4:-93389653 | MS.gene072910:CDS |
| AAAGGCTCAACTTGACACGC+TGG | 0.611700 | 3.4:-93390762 | MS.gene072910:CDS |
| TTGTTAGAACGTGAGTTGGA+AGG | 0.619119 | 3.4:-93392203 | MS.gene072910:CDS |
| TGAAGACAAACGTGCCGAGG+AGG | 0.619168 | 3.4:-93389654 | MS.gene072910:CDS |
| AAGACAAACGTGCCGAGGAG+GGG | 0.620622 | 3.4:-93389652 | MS.gene072910:CDS |
| TGCATGTTTCAAACATTCCG+CGG | 0.630435 | 3.4:-93389697 | MS.gene072910:CDS |
| AAAATTGACTCATGTTACAG+AGG | 0.638213 | 3.4:-93392351 | MS.gene072910:CDS |
| GCATCAGAAGACTTGGTGGA+GGG | 0.649310 | 3.4:+93390963 | None:intergenic |
| GTTTGAAGACAAACGTGCCG+AGG | 0.651860 | 3.4:-93389657 | MS.gene072910:CDS |
| TGTTACAGAGGGGAATGACG+AGG | 0.686418 | 3.4:-93392339 | MS.gene072910:CDS |
| TACAGAGGGGAATGACGAGG+AGG | 0.700089 | 3.4:-93392336 | MS.gene072910:CDS |
| ACAGATATCAGCGAAACACA+AGG | 0.708447 | 3.4:-93392146 | MS.gene072910:CDS |
| CACTTAATAACTGTTCTCCG+CGG | 0.713242 | 3.4:+93389680 | None:intergenic |
| GAGTTTACATGAGATCAAAG+CGG | 0.731573 | 3.4:-93390736 | MS.gene072910:CDS |
| AATTGACTCATGTTACAGAG+GGG | 0.739510 | 3.4:-93392349 | MS.gene072910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAACTCAAAACAAATT+AGG | + | chr3.4:93389977-93389996 | None:intergenic | 15.0% |
| !! | AATTTAATAGTGAGATTTAT+TGG | + | chr3.4:93391941-93391960 | None:intergenic | 15.0% |
| !! | CTAAAAATACAAAATTCAAA+AGG | + | chr3.4:93389954-93389973 | None:intergenic | 15.0% |
| !! | AAACTTGTGATATTTAAGTA+TGG | + | chr3.4:93391264-93391283 | None:intergenic | 20.0% |
| !! | ACATTTGATATATTTAGCAT+CGG | - | chr3.4:93391747-93391766 | MS.gene072910:intron | 20.0% |
| !! | GAATAAAAAGTTTAAGCAAA+TGG | + | chr3.4:93390312-93390331 | None:intergenic | 20.0% |
| !! | TTAATTCATATATACAACGT+TGG | + | chr3.4:93390058-93390077 | None:intergenic | 20.0% |
| !! | TTTATATTAAGAATCTCAGA+TGG | - | chr3.4:93390716-93390735 | MS.gene072910:intron | 20.0% |
| !!! | AAGATTTTACTAGTTATGTA+TGG | + | chr3.4:93391361-93391380 | None:intergenic | 20.0% |
| !!! | CTTAAATATCACAAGTTTTA+TGG | - | chr3.4:93391266-93391285 | MS.gene072910:intron | 20.0% |
| ! | AAACTTGTGATATTGAAGTA+TGG | + | chr3.4:93391322-93391341 | None:intergenic | 25.0% |
| ! | AATAGAATATATGCACAAAG+AGG | + | chr3.4:93392055-93392074 | None:intergenic | 25.0% |
| ! | AATGATGTAGAAAAAAGTAG+TGG | - | chr3.4:93389835-93389854 | MS.gene072910:intron | 25.0% |
| ! | AATGTTAGTAGTTAGTTAGT+TGG | - | chr3.4:93390443-93390462 | MS.gene072910:intron | 25.0% |
| ! | ACATAACTTCTGATTTAAGA+GGG | + | chr3.4:93391448-93391467 | None:intergenic | 25.0% |
| ! | AGTTAACAAGTTGTGAAATA+AGG | + | chr3.4:93392177-93392196 | None:intergenic | 25.0% |
| ! | ATATATACAACGTTGGTATT+TGG | + | chr3.4:93390051-93390070 | None:intergenic | 25.0% |
| ! | ATGATATGAATAGGATTACT+TGG | - | chr3.4:93390155-93390174 | MS.gene072910:intron | 25.0% |
| ! | TAGTATATTTGCCTTTAATC+AGG | + | chr3.4:93390612-93390631 | None:intergenic | 25.0% |
| ! | TTCTTTATGAAAAGAATCTC+CGG | + | chr3.4:93391074-93391093 | None:intergenic | 25.0% |
| !! | CTAGTTGATATATTAAAGAG+TGG | - | chr3.4:93390629-93390648 | MS.gene072910:intron | 25.0% |
| !! | CTTCAATATCACAAGTTTTA+TGG | - | chr3.4:93391324-93391343 | MS.gene072910:intron | 25.0% |
| !! | GTGACTTTTTAATCTAATGA+TGG | - | chr3.4:93391975-93391994 | MS.gene072910:intron | 25.0% |
| AAATGCAGATCATATCATAC+AGG | + | chr3.4:93390230-93390249 | None:intergenic | 30.0% | |
| AAATGGGGTAAATGTCATAT+AGG | - | chr3.4:93391722-93391741 | MS.gene072910:intron | 30.0% | |
| AACTTGGCAATTGAATACAT+TGG | - | chr3.4:93389888-93389907 | MS.gene072910:intron | 30.0% | |
| AATGCTATAATATGCAGTGA+TGG | + | chr3.4:93392103-93392122 | None:intergenic | 30.0% | |
| AATGGGGTAAATGTCATATA+GGG | - | chr3.4:93391723-93391742 | MS.gene072910:intron | 30.0% | |
| ATAGGTAAGTTAGACTTCTT+CGG | + | chr3.4:93391130-93391149 | None:intergenic | 30.0% | |
| ATCATACAGGTATTTCATGT+AGG | + | chr3.4:93390217-93390236 | None:intergenic | 30.0% | |
| ATGGCAAGTTTAACTATGTA+TGG | + | chr3.4:93391303-93391322 | None:intergenic | 30.0% | |
| CCTTATCAATGAATGACAAA+AGG | + | chr3.4:93390386-93390405 | None:intergenic | 30.0% | |
| GACATAACTTCTGATTTAAG+AGG | + | chr3.4:93391449-93391468 | None:intergenic | 30.0% | |
| GTGTATCAGATGATATGAAT+AGG | - | chr3.4:93390146-93390165 | MS.gene072910:intron | 30.0% | |
| TCTTAAACACTTGTCTTGTA+TGG | + | chr3.4:93390261-93390280 | None:intergenic | 30.0% | |
| TCTTTATGAAAAGAATCTCC+GGG | + | chr3.4:93391073-93391092 | None:intergenic | 30.0% | |
| TGATGCTTGTATTAGTATTC+TGG | - | chr3.4:93391487-93391506 | MS.gene072910:intron | 30.0% | |
| TGGACGACTTGAAAATAAAT+GGG | - | chr3.4:93391706-93391725 | MS.gene072910:intron | 30.0% | |
| TGTTTGAAAAGCAACTCAAA+TGG | + | chr3.4:93389646-93389665 | None:intergenic | 30.0% | |
| TTAACATGTATTGCAAGTCT+TGG | + | chr3.4:93391643-93391662 | None:intergenic | 30.0% | |
| TTAAGAAACCAAAATGCTTG+TGG | - | chr3.4:93390275-93390294 | MS.gene072910:intron | 30.0% | |
| TTATCTGCAACAAATTCGAA+AGG | + | chr3.4:93390913-93390932 | None:intergenic | 30.0% | |
| TTCTCGAAAGAGATTGAAAA+AGG | - | chr3.4:93391174-93391193 | MS.gene072910:intron | 30.0% | |
| ! | AAAATTGACTCATGTTACAG+AGG | - | chr3.4:93389603-93389622 | MS.gene072910:CDS | 30.0% |
| ! | AAATTGACTCATGTTACAGA+GGG | - | chr3.4:93389604-93389623 | MS.gene072910:CDS | 30.0% |
| ! | ATACATCCAAGTTGAAGTTA+AGG | + | chr3.4:93390686-93390705 | None:intergenic | 30.0% |
| ! | CCTTTTGTCATTCATTGATA+AGG | - | chr3.4:93390383-93390402 | MS.gene072910:intron | 30.0% |
| !! | AGTGAGATTTATTGGTTCAA+TGG | + | chr3.4:93391933-93391952 | None:intergenic | 30.0% |
| !!! | TTACTTTTTCTTGTCCCTAA+AGG | + | chr3.4:93390563-93390582 | None:intergenic | 30.0% |
| ACCTTATATGCTTCTTTGTG+CGG | - | chr3.4:93391850-93391869 | MS.gene072910:intron | 35.0% | |
| AGCATACATGATGATACAAC+TGG | + | chr3.4:93391537-93391556 | None:intergenic | 35.0% | |
| AGGAGAAGGAAAAAGTAAAC+TGG | - | chr3.4:93390403-93390422 | MS.gene072910:intron | 35.0% | |
| AGTAGTTAGTTAGTTGGTCA+GGG | - | chr3.4:93390449-93390468 | MS.gene072910:intron | 35.0% | |
| ATGGGGTAAATGTCATATAG+GGG | - | chr3.4:93391724-93391743 | MS.gene072910:intron | 35.0% | |
| CAAACACCTTAACTTCAACT+TGG | - | chr3.4:93390677-93390696 | MS.gene072910:intron | 35.0% | |
| CAATCCCTAATGTTAACTTC+CGG | - | chr3.4:93390869-93390888 | MS.gene072910:CDS | 35.0% | |
| GAGTTTACATGAGATCAAAG+CGG | - | chr3.4:93391218-93391237 | MS.gene072910:intron | 35.0% | |
| GCATACATGATGATACAACT+GGG | + | chr3.4:93391536-93391555 | None:intergenic | 35.0% | |
| GGACGACTTGAAAATAAATG+GGG | - | chr3.4:93391707-93391726 | MS.gene072910:intron | 35.0% | |
| GGTGTTTGCAAGCAAATTAA+CGG | + | chr3.4:93390665-93390684 | None:intergenic | 35.0% | |
| GTCATTCATTGATAAGGAGA+AGG | - | chr3.4:93390389-93390408 | MS.gene072910:intron | 35.0% | |
| GTGGACGACTTGAAAATAAA+TGG | - | chr3.4:93391705-93391724 | MS.gene072910:intron | 35.0% | |
| TAGTAGTTAGTTAGTTGGTC+AGG | - | chr3.4:93390448-93390467 | MS.gene072910:intron | 35.0% | |
| TCATCTGATACACTTAGTTG+TGG | + | chr3.4:93390139-93390158 | None:intergenic | 35.0% | |
| TTCATGACATGCAACAGAAT+TGG | - | chr3.4:93391149-93391168 | MS.gene072910:intron | 35.0% | |
| TTCTGTTGCATGTCATGAAT+AGG | + | chr3.4:93391148-93391167 | None:intergenic | 35.0% | |
| ! | AAAGGCTTACACTTAGTTTG+CGG | + | chr3.4:93389936-93389955 | None:intergenic | 35.0% |
| ! | AATTGACTCATGTTACAGAG+GGG | - | chr3.4:93389605-93389624 | MS.gene072910:CDS | 35.0% |
| ! | ACTGTTTTCCACAAGCATTT+TGG | + | chr3.4:93390286-93390305 | None:intergenic | 35.0% |
| ! | ATGGCAAGTTTAACTTACAG+TGG | + | chr3.4:93391245-93391264 | None:intergenic | 35.0% |
| ! | CAAAGAAGCATATAAGGTGA+TGG | + | chr3.4:93391848-93391867 | None:intergenic | 35.0% |
| ! | TACTTGGTTTGAGTATGAAG+AGG | - | chr3.4:93390171-93390190 | MS.gene072910:intron | 35.0% |
| ! | TGGCAAGTTTAACTTACAGT+GGG | + | chr3.4:93391244-93391263 | None:intergenic | 35.0% |
| !! | GAGATTTATTGGTTCAATGG+TGG | + | chr3.4:93391930-93391949 | None:intergenic | 35.0% |
| !! | TACACTCCATTTTTCTAGTC+CGG | - | chr3.4:93391414-93391433 | MS.gene072910:intron | 35.0% |
| AAACAGGAAATGCTAGTAGG+AGG | - | chr3.4:93390473-93390492 | MS.gene072910:intron | 40.0% | |
| AAAGGAGTAGTGTAGTGGTT+TGG | + | chr3.4:93390545-93390564 | None:intergenic | 40.0% | |
| AAAGTGACAAGCATGTGTCT+TGG | - | chr3.4:93392124-93392143 | MS.gene072910:CDS | 40.0% | |
| AACAGGAAATGCTAGTAGGA+GGG | - | chr3.4:93390474-93390493 | MS.gene072910:intron | 40.0% | |
| AACCACTACACTACTCCTTT+AGG | - | chr3.4:93390545-93390564 | MS.gene072910:intron | 40.0% | |
| AATGACAAAAGGCCAAGTCA+AGG | + | chr3.4:93390375-93390394 | None:intergenic | 40.0% | |
| ACAGATATCAGCGAAACACA+AGG | - | chr3.4:93389808-93389827 | MS.gene072910:intron | 40.0% | |
| ACCACTACACTACTCCTTTA+GGG | - | chr3.4:93390546-93390565 | MS.gene072910:intron | 40.0% | |
| ATAAAGCGAGAAGGAAAGAG+AGG | - | chr3.4:93390791-93390810 | MS.gene072910:CDS | 40.0% | |
| ATTCGCTGAAGCTTAGAACT+TGG | - | chr3.4:93389872-93389891 | MS.gene072910:intron | 40.0% | |
| ATTTAAGAGGGAATTGCTGC+CGG | + | chr3.4:93391436-93391455 | None:intergenic | 40.0% | |
| CACTTAATAACTGTTCTCCG+CGG | + | chr3.4:93392277-93392296 | None:intergenic | 40.0% | |
| CATTGTAGTTCAAGACAGAC+AGG | + | chr3.4:93392212-93392231 | None:intergenic | 40.0% | |
| CTCCTGCTTAGAACTTCTTT+GGG | - | chr3.4:93390511-93390530 | MS.gene072910:intron | 40.0% | |
| GAGTCCGGAAGTTAACATTA+GGG | + | chr3.4:93390876-93390895 | None:intergenic | 40.0% | |
| GGAAAACAGGAAATGCTAGT+AGG | - | chr3.4:93390470-93390489 | MS.gene072910:intron | 40.0% | |
| GTAAACTTGATAGATCAGCC+AGG | - | chr3.4:93390579-93390598 | MS.gene072910:intron | 40.0% | |
| GTAGAAAAAAGTAGTGGCGA+TGG | - | chr3.4:93389841-93389860 | MS.gene072910:intron | 40.0% | |
| GTGAAACTGAGAAATGAGTC+CGG | + | chr3.4:93390891-93390910 | None:intergenic | 40.0% | |
| GTTCATGTGATAAAGCGAGA+AGG | - | chr3.4:93390782-93390801 | MS.gene072910:CDS | 40.0% | |
| TAAAGCGAGAAGGAAAGAGA+GGG | - | chr3.4:93390792-93390811 | MS.gene072910:CDS | 40.0% | |
| TAGGTTCATCAGGAATCGAT+AGG | + | chr3.4:93391021-93391040 | None:intergenic | 40.0% | |
| TAGTTCAAGACAGACAGGTA+AGG | + | chr3.4:93392207-93392226 | None:intergenic | 40.0% | |
| TCAAGCTAAGTGTCATATCG+TGG | - | chr3.4:93391686-93391705 | MS.gene072910:intron | 40.0% | |
| TCACTTGTGCACCATAGAAT+TGG | + | chr3.4:93391876-93391895 | None:intergenic | 40.0% | |
| TCCTGCTTAGAACTTCTTTG+GGG | - | chr3.4:93390512-93390531 | MS.gene072910:intron | 40.0% | |
| TGAGTCCGGAAGTTAACATT+AGG | + | chr3.4:93390877-93390896 | None:intergenic | 40.0% | |
| TGCATGTTTCAAACATTCCG+CGG | - | chr3.4:93392257-93392276 | MS.gene072910:CDS | 40.0% | |
| TTGTTTCATTAGCAGACTGC+TGG | + | chr3.4:93392351-93392370 | None:intergenic | 40.0% | |
| ! | AAGGTGATGGTTGACATTGT+GGG | + | chr3.4:93391835-93391854 | None:intergenic | 40.0% |
| ! | ACGATATGACACTTAGCTTG+AGG | + | chr3.4:93391687-93391706 | None:intergenic | 40.0% |
| ! | AGTAGTGTAGTGGTTTGGAT+TGG | + | chr3.4:93390540-93390559 | None:intergenic | 40.0% |
| ! | CAAAGAGGCTTTGTCTAACA+TGG | + | chr3.4:93392040-93392059 | None:intergenic | 40.0% |
| ! | TAAGGTGATGGTTGACATTG+TGG | + | chr3.4:93391836-93391855 | None:intergenic | 40.0% |
| ! | TGCTTTGTTAGAACGTGAGT+TGG | - | chr3.4:93389747-93389766 | MS.gene072910:intron | 40.0% |
| ! | TTGTTAGAACGTGAGTTGGA+AGG | - | chr3.4:93389751-93389770 | MS.gene072910:intron | 40.0% |
| !! | AGATGGATTTTCCTTGCAAG+GGG | - | chr3.4:93390733-93390752 | MS.gene072910:CDS | 40.0% |
| !! | CAGATGGATTTTCCTTGCAA+GGG | - | chr3.4:93390732-93390751 | MS.gene072910:CDS | 40.0% |
| !! | TCAGATGGATTTTCCTTGCA+AGG | - | chr3.4:93390731-93390750 | MS.gene072910:CDS | 40.0% |
| !! | TCTGATTTGCTTCCTTGACT+TGG | - | chr3.4:93390360-93390379 | MS.gene072910:intron | 40.0% |
| !! | TTGGCTAGAGCATTGAAAAC+TGG | - | chr3.4:93389907-93389926 | MS.gene072910:intron | 40.0% |
| ACTTGATAGATCAGCCAGGT+TGG | - | chr3.4:93390583-93390602 | MS.gene072910:intron | 45.0% | |
| AGCTCTATCAAGACAGAGCT+CGG | + | chr3.4:93390948-93390967 | None:intergenic | 45.0% | |
| ATTGAGCAGACAACTAGCAC+AGG | + | chr3.4:93390853-93390872 | None:intergenic | 45.0% | |
| CCTCCTGCTTAGAACTTCTT+TGG | - | chr3.4:93390510-93390529 | MS.gene072910:intron | 45.0% | |
| CGCGGAGAACAGTTATTAAG+TGG | - | chr3.4:93392275-93392294 | MS.gene072910:CDS | 45.0% | |
| CTTGATAGATCAGCCAGGTT+GGG | - | chr3.4:93390584-93390603 | MS.gene072910:intron | 45.0% | |
| GATCATGCTCATGCAGAATC+TGG | - | chr3.4:93391103-93391122 | MS.gene072910:intron | 45.0% | |
| GGTGATACTGCTGATGGTTT+AGG | + | chr3.4:93391040-93391059 | None:intergenic | 45.0% | |
| GTTAGTTGGTCAGGGAAAAC+AGG | - | chr3.4:93390457-93390476 | MS.gene072910:intron | 45.0% | |
| TCATTAGCAGACTGCTGGTA+AGG | + | chr3.4:93392346-93392365 | None:intergenic | 45.0% | |
| TCCCTAAAGGAGTAGTGTAG+TGG | + | chr3.4:93390550-93390569 | None:intergenic | 45.0% | |
| TCTTTGTGCGGCCAATTCTA+TGG | - | chr3.4:93391862-93391881 | MS.gene072910:intron | 45.0% | |
| TTGATAGATCAGCCAGGTTG+GGG | - | chr3.4:93390585-93390604 | MS.gene072910:intron | 45.0% | |
| ! | GCCGCACAAAGAAGCATATA+AGG | + | chr3.4:93391854-93391873 | None:intergenic | 45.0% |
| ! | GCTGATGGTTTAGGTTCATC+AGG | + | chr3.4:93391031-93391050 | None:intergenic | 45.0% |
| ! | GTTTCAGGTGATACTGCTGA+TGG | + | chr3.4:93391046-93391065 | None:intergenic | 45.0% |
| ! | TTGCTGCCGGACTAGAAAAA+TGG | + | chr3.4:93391423-93391442 | None:intergenic | 45.0% |
| !! | AAGTTCTAAGCAGGAGGTCT+AGG | + | chr3.4:93390507-93390526 | None:intergenic | 45.0% |
| !! | ACCCCAAAGAAGTTCTAAGC+AGG | + | chr3.4:93390516-93390535 | None:intergenic | 45.0% |
| !! | AGTTCTAAGCAGGAGGTCTA+GGG | + | chr3.4:93390506-93390525 | None:intergenic | 45.0% |
| !! | CCAAAGAAGTTCTAAGCAGG+AGG | + | chr3.4:93390513-93390532 | None:intergenic | 45.0% |
| AAAGGCTCAACTTGACACGC+TGG | - | chr3.4:93391192-93391211 | MS.gene072910:intron | 50.0% | |
| AGGCTCAGCATCAGAAGACT+TGG | + | chr3.4:93391001-93391020 | None:intergenic | 50.0% | |
| CTCAGCATCAGAAGACTTGG+TGG | + | chr3.4:93390998-93391017 | None:intergenic | 50.0% | |
| CTTTAATCAGGACCCCAACC+TGG | + | chr3.4:93390600-93390619 | None:intergenic | 50.0% | |
| GTATCACCTGAAACTACGCC+CGG | - | chr3.4:93391052-93391071 | MS.gene072910:intron | 50.0% | |
| GTGATGGTTGACATTGTGGG+AGG | + | chr3.4:93391832-93391851 | None:intergenic | 50.0% | |
| GTTTGAAGACAAACGTGCCG+AGG | - | chr3.4:93392297-93392316 | MS.gene072910:CDS | 50.0% | |
| TCAAACTTGCACCCCTTGCA+AGG | + | chr3.4:93390747-93390766 | None:intergenic | 50.0% | |
| TGGTAAGGAAGACGATGCTC+TGG | + | chr3.4:93392331-93392350 | None:intergenic | 50.0% | |
| TGTTACAGAGGGGAATGACG+AGG | - | chr3.4:93389615-93389634 | MS.gene072910:CDS | 50.0% | |
| ! | ACGTGAGTTGGAAGGTGTGT+TGG | - | chr3.4:93389759-93389778 | MS.gene072910:intron | 50.0% |
| ! | CAGGTTGGGGTCCTGATTAA+AGG | - | chr3.4:93390598-93390617 | MS.gene072910:intron | 50.0% |
| ! | CGTGAGTTGGAAGGTGTGTT+GGG | - | chr3.4:93389760-93389779 | MS.gene072910:intron | 50.0% |
| ! | TGCAAGGGGTGCAAGTTTGA+AGG | - | chr3.4:93390747-93390766 | MS.gene072910:CDS | 50.0% |
| !! | AGCATCAGAAGACTTGGTGG+AGG | + | chr3.4:93390995-93391014 | None:intergenic | 50.0% |
| !! | GCATCAGAAGACTTGGTGGA+GGG | + | chr3.4:93390994-93391013 | None:intergenic | 50.0% |
| AAGACAAACGTGCCGAGGAG+GGG | - | chr3.4:93392302-93392321 | MS.gene072910:CDS | 55.0% | |
| GAAGACAAACGTGCCGAGGA+GGG | - | chr3.4:93392301-93392320 | MS.gene072910:CDS | 55.0% | |
| GAATCTCCGGGCGTAGTTTC+AGG | + | chr3.4:93391061-93391080 | None:intergenic | 55.0% | |
| TACAGAGGGGAATGACGAGG+AGG | - | chr3.4:93389618-93389637 | MS.gene072910:CDS | 55.0% | |
| TGAAGACAAACGTGCCGAGG+AGG | - | chr3.4:93392300-93392319 | MS.gene072910:CDS | 55.0% | |
| AGACAAACGTGCCGAGGAGG+GGG | - | chr3.4:93392303-93392322 | MS.gene072910:CDS | 60.0% | |
| !! | ATGCTCTGGAACCCCCTCCT+CGG | + | chr3.4:93392317-93392336 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 93389601 | 93392375 | 93389601 | ID=MS.gene072910 |
| chr3.4 | mRNA | 93389601 | 93392375 | 93389601 | ID=MS.gene072910.t1;Parent=MS.gene072910 |
| chr3.4 | exon | 93392031 | 93392375 | 93392031 | ID=MS.gene072910.t1.exon1;Parent=MS.gene072910.t1 |
| chr3.4 | CDS | 93392031 | 93392375 | 93392031 | ID=cds.MS.gene072910.t1;Parent=MS.gene072910.t1 |
| chr3.4 | exon | 93390730 | 93391047 | 93390730 | ID=MS.gene072910.t1.exon2;Parent=MS.gene072910.t1 |
| chr3.4 | CDS | 93390730 | 93391047 | 93390730 | ID=cds.MS.gene072910.t1;Parent=MS.gene072910.t1 |
| chr3.4 | exon | 93389601 | 93389741 | 93389601 | ID=MS.gene072910.t1.exon3;Parent=MS.gene072910.t1 |
| chr3.4 | CDS | 93389601 | 93389741 | 93389601 | ID=cds.MS.gene072910.t1;Parent=MS.gene072910.t1 |
| Gene Sequence |
| Protein sequence |
