Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072957.t1 | XP_003603467.1 | 97.4 | 499 | 13 | 0 | 1 | 499 | 1 | 499 | 5.60E-282 | 979.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072957.t1 | Q93YV6 | 72.7 | 498 | 131 | 3 | 1 | 498 | 1 | 493 | 3.7e-210 | 732.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072957.t1 | G7JBQ2 | 97.4 | 499 | 13 | 0 | 1 | 499 | 1 | 499 | 4.0e-282 | 979.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47441 | MS.gene072957 | PPI |
| MS.gene25819 | MS.gene072957 | PPI |
| MS.gene072957 | MS.gene035014 | PPI |
| MS.gene072957 | MS.gene067043 | PPI |
| MS.gene044183 | MS.gene072957 | PPI |
| MS.gene072957 | MS.gene007562 | PPI |
| MS.gene79120 | MS.gene072957 | PPI |
| MS.gene072957 | MS.gene051425 | PPI |
| MS.gene029756 | MS.gene072957 | PPI |
| MS.gene072957 | MS.gene22385 | PPI |
| MS.gene072957 | MS.gene70740 | PPI |
| MS.gene072957 | MS.gene75564 | PPI |
| MS.gene072957 | MS.gene020631 | PPI |
| MS.gene045221 | MS.gene072957 | PPI |
| MS.gene072957 | MS.gene007383 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072957.t1 | MTR_3g107980 | 97.395 | 499 | 13 | 0 | 1 | 499 | 1 | 499 | 0.0 | 1006 |
| MS.gene072957.t1 | MTR_1g011460 | 80.439 | 501 | 87 | 5 | 1 | 499 | 1 | 492 | 0.0 | 828 |
| MS.gene072957.t1 | MTR_4g113020 | 58.434 | 498 | 197 | 5 | 1 | 493 | 1 | 493 | 0.0 | 611 |
| MS.gene072957.t1 | MTR_6g022720 | 54.280 | 514 | 212 | 5 | 1 | 498 | 1 | 507 | 0.0 | 552 |
| MS.gene072957.t1 | MTR_3g086010 | 51.316 | 532 | 204 | 4 | 1 | 497 | 1 | 512 | 0.0 | 540 |
| MS.gene072957.t1 | MTR_3g080070 | 57.576 | 462 | 184 | 3 | 44 | 497 | 66 | 523 | 0.0 | 525 |
| MS.gene072957.t1 | MTR_1g062950 | 57.395 | 453 | 187 | 3 | 36 | 484 | 26 | 476 | 0.0 | 520 |
| MS.gene072957.t1 | MTR_4g113020 | 60.560 | 393 | 145 | 5 | 1 | 388 | 1 | 388 | 8.66e-174 | 494 |
| MS.gene072957.t1 | MTR_1g111570 | 54.102 | 451 | 195 | 4 | 54 | 497 | 43 | 488 | 6.38e-168 | 483 |
| MS.gene072957.t1 | MTR_6g022720 | 55.147 | 408 | 161 | 4 | 1 | 392 | 1 | 402 | 2.34e-153 | 443 |
| MS.gene072957.t1 | MTR_7g102900 | 56.787 | 361 | 154 | 2 | 35 | 395 | 12 | 370 | 3.45e-142 | 413 |
| MS.gene072957.t1 | MTR_1g112940 | 40.144 | 416 | 245 | 3 | 69 | 484 | 23 | 434 | 4.39e-116 | 349 |
| MS.gene072957.t1 | MTR_7g102920 | 59.813 | 107 | 43 | 0 | 387 | 493 | 22 | 128 | 2.64e-32 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072957.t1 | AT5G25510 | 72.691 | 498 | 131 | 3 | 1 | 498 | 1 | 493 | 0.0 | 749 |
| MS.gene072957.t1 | AT1G13460 | 58.734 | 458 | 181 | 2 | 36 | 486 | 31 | 487 | 0.0 | 555 |
| MS.gene072957.t1 | AT1G13460 | 58.734 | 458 | 181 | 2 | 36 | 486 | 31 | 487 | 0.0 | 555 |
| MS.gene072957.t1 | AT3G26020 | 55.842 | 505 | 195 | 4 | 1 | 480 | 1 | 502 | 0.0 | 552 |
| MS.gene072957.t1 | AT3G26020 | 55.842 | 505 | 195 | 4 | 1 | 480 | 1 | 502 | 0.0 | 552 |
| MS.gene072957.t1 | AT3G26020 | 55.842 | 505 | 195 | 4 | 1 | 480 | 1 | 502 | 0.0 | 552 |
| MS.gene072957.t1 | AT3G26020 | 55.842 | 505 | 195 | 4 | 1 | 480 | 1 | 502 | 0.0 | 552 |
| MS.gene072957.t1 | AT4G15415 | 53.743 | 521 | 200 | 6 | 1 | 496 | 1 | 505 | 0.0 | 551 |
| MS.gene072957.t1 | AT4G15415 | 53.743 | 521 | 200 | 6 | 1 | 496 | 1 | 505 | 0.0 | 551 |
| MS.gene072957.t1 | AT4G15415 | 53.743 | 521 | 200 | 6 | 1 | 496 | 1 | 505 | 0.0 | 551 |
| MS.gene072957.t1 | AT4G15415 | 53.743 | 521 | 200 | 6 | 1 | 496 | 1 | 505 | 0.0 | 551 |
| MS.gene072957.t1 | AT3G21650 | 52.886 | 537 | 202 | 5 | 1 | 496 | 1 | 527 | 0.0 | 551 |
| MS.gene072957.t1 | AT3G21650 | 52.886 | 537 | 202 | 5 | 1 | 496 | 1 | 527 | 0.0 | 551 |
| MS.gene072957.t1 | AT3G09880 | 54.217 | 498 | 214 | 4 | 1 | 491 | 1 | 491 | 0.0 | 528 |
| MS.gene072957.t1 | AT5G03470 | 52.138 | 491 | 217 | 4 | 1 | 482 | 1 | 482 | 0.0 | 518 |
| MS.gene072957.t1 | AT3G26030 | 51.639 | 488 | 217 | 6 | 1 | 484 | 1 | 473 | 1.70e-174 | 499 |
| MS.gene072957.t1 | AT3G26020 | 46.881 | 561 | 193 | 6 | 1 | 488 | 1 | 529 | 3.71e-162 | 470 |
| MS.gene072957.t1 | AT3G54930 | 50.780 | 449 | 212 | 4 | 41 | 485 | 51 | 494 | 8.84e-157 | 455 |
| MS.gene072957.t1 | AT3G54930 | 50.780 | 449 | 212 | 4 | 41 | 485 | 51 | 494 | 8.84e-157 | 455 |
| MS.gene072957.t1 | AT3G26020 | 47.243 | 544 | 199 | 8 | 1 | 488 | 1 | 512 | 1.79e-155 | 452 |
| MS.gene072957.t1 | AT3G26020 | 47.243 | 544 | 199 | 8 | 1 | 488 | 1 | 512 | 1.79e-155 | 452 |
| MS.gene072957.t1 | AT3G26020 | 47.243 | 544 | 199 | 8 | 1 | 488 | 1 | 512 | 1.79e-155 | 452 |
| MS.gene072957.t1 | AT4G15415 | 53.995 | 413 | 150 | 5 | 1 | 388 | 1 | 398 | 4.37e-152 | 441 |
| MS.gene072957.t1 | AT3G54930 | 48.864 | 352 | 171 | 4 | 41 | 388 | 51 | 397 | 1.32e-115 | 347 |
Find 104 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAGCAGTTTACACTTTC+AGG | 0.121863 | 3.1:-85794302 | MS.gene072957:intron |
| GTTGATTTCGTTTCTTCTTT+TGG | 0.126517 | 3.1:-85795084 | MS.gene072957:CDS |
| TGGTGAACTTGAAGAAATTT+TGG | 0.149673 | 3.1:-85794389 | MS.gene072957:CDS |
| ACAATTATGCATAGGGTTTA+TGG | 0.161244 | 3.1:-85794754 | MS.gene072957:CDS |
| CGATTATGAGCCCTATAATT+TGG | 0.163883 | 3.1:+85794985 | None:intergenic |
| TCTTTCTGACTATGTGTTAT+TGG | 0.185063 | 3.1:+85794424 | None:intergenic |
| TGAACCGTTGGTGCCGTTTA+AGG | 0.236729 | 3.1:-85795238 | MS.gene072957:CDS |
| CCATGCTTCATTCCGTTTCT+CGG | 0.255715 | 3.1:+85793248 | None:intergenic |
| CTGAAAGAGCCCTTTACTTA+TGG | 0.260970 | 3.1:-85793488 | MS.gene072957:CDS |
| GACTCAACTTGCTTACAAAA+AGG | 0.294484 | 3.1:+85795190 | None:intergenic |
| TTTGCATAAGCCTAGATCTA+TGG | 0.307302 | 3.1:-85794545 | MS.gene072957:CDS |
| TAAGGGGTTTGTTGAAATAT+TGG | 0.309574 | 3.1:-85794447 | MS.gene072957:CDS |
| GGGTCATGGTACCATTGTTT+TGG | 0.346012 | 3.1:-85794339 | MS.gene072957:CDS |
| TCAACGACACGGTGCTTGTC+GGG | 0.353803 | 3.1:+85795262 | None:intergenic |
| TTCGTTTATTTCGACATTGT+TGG | 0.361294 | 3.1:-85794821 | MS.gene072957:CDS |
| TTAATCGATTTCCGAATATA+AGG | 0.364782 | 3.1:+85794712 | None:intergenic |
| TGGTTCATAGACCTTATATT+CGG | 0.373056 | 3.1:-85794723 | MS.gene072957:CDS |
| TCGAAAGATGTTCAAGGAAA+TGG | 0.374042 | 3.1:-85793337 | MS.gene072957:CDS |
| GCGTTTGATTTCACCGATCC+TGG | 0.382769 | 3.1:-85795156 | MS.gene072957:CDS |
| TGAGTTAAGTTGAGCACTGC+TGG | 0.396441 | 3.1:+85793366 | None:intergenic |
| GTTGGCAAGCATCGTGATAA+GGG | 0.396633 | 3.1:-85794464 | MS.gene072957:CDS |
| TGTTTAATTCAGAGGATCCT+AGG | 0.408299 | 3.1:-85794795 | MS.gene072957:CDS |
| TAGGGTTTATGGAAAATTCA+TGG | 0.408503 | 3.1:-85794743 | MS.gene072957:CDS |
| AAAAGTTCCGGTTATCAAAT+CGG | 0.415885 | 3.1:+85793162 | None:intergenic |
| ATCAACGACACGGTGCTTGT+CGG | 0.430172 | 3.1:+85795261 | None:intergenic |
| TAACACAATAAGACAATTGT+TGG | 0.432178 | 3.1:+85794512 | None:intergenic |
| TCCGACTGCAGGCTTGAGAC+TGG | 0.432874 | 3.1:+85793206 | None:intergenic |
| TACTTGTCGTTCTCAGTGTA+AGG | 0.435400 | 3.1:-85793298 | MS.gene072957:CDS |
| TATAGGGCTCATAATCGAAT+TGG | 0.435556 | 3.1:-85794979 | MS.gene072957:CDS |
| TCTAGGGCTGGAAATATGAT+AGG | 0.438519 | 3.1:+85793414 | None:intergenic |
| TTAACATGGTTGAATTTCAA+AGG | 0.444198 | 3.1:-85794360 | MS.gene072957:CDS |
| TTTGAGACTGAGAAACATAA+TGG | 0.446941 | 3.1:-85794667 | MS.gene072957:CDS |
| TGAATTCCTTCTCGCGGCGT+TGG | 0.448025 | 3.1:+85795299 | None:intergenic |
| ATCTTCTTGTCTTGATGCTA+AGG | 0.450536 | 3.1:-85794866 | MS.gene072957:CDS |
| AGTTGGCAAGCATCGTGATA+AGG | 0.452845 | 3.1:-85794465 | MS.gene072957:CDS |
| TAATGGGATTGCTGAGTTGT+TGG | 0.454254 | 3.1:-85794650 | MS.gene072957:CDS |
| GTTCACAAGGTGGCAACGAT+GGG | 0.457049 | 3.1:-85795329 | MS.gene072957:CDS |
| GTCATTGTTCCATAAGTAAA+GGG | 0.458533 | 3.1:+85793479 | None:intergenic |
| TTTGAAGACAATTATGCATA+GGG | 0.458555 | 3.1:-85794761 | MS.gene072957:CDS |
| GAGCTAGGAACATCCTTAAA+CGG | 0.461998 | 3.1:+85795225 | None:intergenic |
| GGCTGTGAAAATTCTTCTCT+AGG | 0.462683 | 3.1:+85793397 | None:intergenic |
| TGAAAATTCTTCTCTAGGGC+TGG | 0.465398 | 3.1:+85793402 | None:intergenic |
| TTGCATAAGCCTAGATCTAT+GGG | 0.468637 | 3.1:-85794544 | MS.gene072957:CDS |
| CTACACATTGCAAGAATAGC+TGG | 0.471777 | 3.1:+85795042 | None:intergenic |
| TTCAGAGGATCCTAGGGAAA+GGG | 0.481136 | 3.1:-85794788 | MS.gene072957:CDS |
| ATCACGATGCTTGCCAACTT+AGG | 0.482220 | 3.1:+85794469 | None:intergenic |
| TAACATGGTTGAATTTCAAA+GGG | 0.486120 | 3.1:-85794359 | MS.gene072957:CDS |
| TAGATCTAGGCTTATGCAAA+GGG | 0.487403 | 3.1:+85794548 | None:intergenic |
| ACAGCGGTGTTTCCGACTGC+AGG | 0.494459 | 3.1:+85793195 | None:intergenic |
| TTCTCCACAACGTTCTTACC+AGG | 0.494722 | 3.1:+85795138 | None:intergenic |
| TTGAGACTGAGAAACATAAT+GGG | 0.499989 | 3.1:-85794666 | MS.gene072957:CDS |
| GGTCATTGTTCCATAAGTAA+AGG | 0.501018 | 3.1:+85793478 | None:intergenic |
| TATAGAGAAGGAGCCTAAGT+TGG | 0.501710 | 3.1:-85794482 | MS.gene072957:CDS |
| TAATGTTCGAAAGATGTTCA+AGG | 0.504213 | 3.1:-85793343 | MS.gene072957:CDS |
| CAGAAAGAGGTAATGTTCCT+TGG | 0.505468 | 3.1:-85794409 | MS.gene072957:CDS |
| GTTGGAGTTGTTTAATTCAG+AGG | 0.506382 | 3.1:-85794803 | MS.gene072957:CDS |
| CACGATTCGTCTCGAGTCGC+CGG | 0.507626 | 3.1:-85795363 | MS.gene072957:CDS |
| TATGAGCCCTATAATTTGGC+GGG | 0.511960 | 3.1:+85794989 | None:intergenic |
| AGTTGAAGATGAGGCCAAGC+AGG | 0.513838 | 3.1:+85794919 | None:intergenic |
| CGTTCACAAGGTGGCAACGA+TGG | 0.515708 | 3.1:-85795330 | MS.gene072957:CDS |
| TACACTGAGAACGACAAGTA+AGG | 0.518679 | 3.1:+85793301 | None:intergenic |
| GTTTAAGGATGTTCCTAGCT+CGG | 0.529201 | 3.1:-85795223 | MS.gene072957:CDS |
| GTTTGAAGACAATTATGCAT+AGG | 0.530923 | 3.1:-85794762 | MS.gene072957:CDS |
| TTCTTGTCTTGATGCTAAGG+TGG | 0.535125 | 3.1:-85794863 | MS.gene072957:CDS |
| CGTGTCGTTGATTGAACCGT+TGG | 0.536205 | 3.1:-85795250 | MS.gene072957:CDS |
| AATAACACATAGTCAGAAAG+AGG | 0.543766 | 3.1:-85794422 | MS.gene072957:CDS |
| GTTTAATTCAGAGGATCCTA+GGG | 0.547186 | 3.1:-85794794 | MS.gene072957:CDS |
| CATCGTTGCCACCTTGTGAA+CGG | 0.548599 | 3.1:+85795331 | None:intergenic |
| TGTTACACAGTTTATAGAGA+AGG | 0.551841 | 3.1:-85794494 | MS.gene072957:CDS |
| AGGGCTCATAATCGAATTGG+TGG | 0.561637 | 3.1:-85794976 | MS.gene072957:CDS |
| TTCAAACAATCCCTTTCCCT+AGG | 0.563376 | 3.1:+85794778 | None:intergenic |
| CCGAGAAACGGAATGAAGCA+TGG | 0.564439 | 3.1:-85793248 | MS.gene072957:CDS |
| TAAACTCAGAATCCGAGAAA+CGG | 0.564512 | 3.1:-85793260 | MS.gene072957:CDS |
| ATTCAGAGGATCCTAGGGAA+AGG | 0.566825 | 3.1:-85794789 | MS.gene072957:CDS |
| GGTTGAATTTCAAAGGGTCA+TGG | 0.572983 | 3.1:-85794353 | MS.gene072957:CDS |
| TTATGAGCCCTATAATTTGG+CGG | 0.573142 | 3.1:+85794988 | None:intergenic |
| GGCCAAGCAGGATCAAAAGC+TGG | 0.573611 | 3.1:+85794931 | None:intergenic |
| CAAAACATCAAAACATGACT+CGG | 0.575102 | 3.1:-85795409 | MS.gene072957:CDS |
| CACAACGTTCTTACCAGGAT+CGG | 0.577144 | 3.1:+85795143 | None:intergenic |
| GCTGTGAAAATTCTTCTCTA+GGG | 0.582234 | 3.1:+85793398 | None:intergenic |
| ATAGATCTAGGCTTATGCAA+AGG | 0.583981 | 3.1:+85794547 | None:intergenic |
| GTAAAGCCAACGCCGCGAGA+AGG | 0.584594 | 3.1:-85795305 | MS.gene072957:CDS |
| TGATAGGTAGTATCACTTGA+CGG | 0.585783 | 3.1:+85793430 | None:intergenic |
| GCCAGTCTCAAGCCTGCAGT+CGG | 0.589044 | 3.1:-85793207 | MS.gene072957:CDS |
| TCGTAAACAAGTTGAAGATG+AGG | 0.589521 | 3.1:+85794910 | None:intergenic |
| GCTTAGAAATTGCTTCAACA+TGG | 0.590281 | 3.1:+85795443 | None:intergenic |
| TTGGCAAGCATCGTGATAAG+GGG | 0.613299 | 3.1:-85794463 | MS.gene072957:CDS |
| GCATAAGCCTAGATCTATGG+GGG | 0.614955 | 3.1:-85794542 | MS.gene072957:CDS |
| TGAGCACTGCTGGATTCCAA+TGG | 0.617342 | 3.1:+85793376 | None:intergenic |
| AGCGGATGAATTCCTTCTCG+CGG | 0.621922 | 3.1:+85795293 | None:intergenic |
| CGATCCTGGTAAGAACGTTG+TGG | 0.627401 | 3.1:-85795142 | MS.gene072957:CDS |
| TTGTCGTTCTCAGTGTAAGG+AGG | 0.628066 | 3.1:-85793295 | MS.gene072957:CDS |
| TTCACAAGGTGGCAACGATG+GGG | 0.629684 | 3.1:-85795328 | MS.gene072957:CDS |
| TATCCAATTCGCCAAAACAA+TGG | 0.631825 | 3.1:+85794328 | None:intergenic |
| GCTCATAATCGAATTGGTGG+CGG | 0.634215 | 3.1:-85794973 | MS.gene072957:CDS |
| ACATCCTTAAACGGCACCAA+CGG | 0.634758 | 3.1:+85795234 | None:intergenic |
| TGCATAAGCCTAGATCTATG+GGG | 0.657749 | 3.1:-85794543 | MS.gene072957:CDS |
| TCACAAGGTGGCAACGATGG+GGG | 0.663490 | 3.1:-85795327 | MS.gene072957:CDS |
| CAACGGTTCAATCAACGACA+CGG | 0.678323 | 3.1:+85795251 | None:intergenic |
| AAATTTCTTCAAGTTCACCA+AGG | 0.678727 | 3.1:+85794392 | None:intergenic |
| AATCGGAGAGACTAAAACAG+CGG | 0.688386 | 3.1:+85793179 | None:intergenic |
| GAGAAGGAATTCATCCGCTG+CGG | 0.691016 | 3.1:-85795289 | MS.gene072957:CDS |
| GAGCAATCAAATTGACAATG+TGG | 0.692072 | 3.1:+85793457 | None:intergenic |
| GCTTGTCGGGAAAACCGCAG+CGG | 0.752837 | 3.1:+85795275 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAACCTCATTATTT+GGG | - | chr3.1:85794362-85794381 | MS.gene072957:CDS | 15.0% |
| !! | AAAAATAACATTGGAATAAT+AGG | + | chr3.1:85794392-85794411 | None:intergenic | 15.0% |
| !! | ATATACTTGTAGAAAATATA+GGG | + | chr3.1:85794944-85794963 | None:intergenic | 15.0% |
| !! | TAAAAAAAAACCTCATTATT+TGG | - | chr3.1:85794361-85794380 | MS.gene072957:CDS | 15.0% |
| !! | TATATACTTGTAGAAAATAT+AGG | + | chr3.1:85794945-85794964 | None:intergenic | 15.0% |
| !! | TATTGGAATAAAAATAACAT+TGG | + | chr3.1:85794401-85794420 | None:intergenic | 15.0% |
| !!! | TTTTGGAATATTGATAATAT+GGG | + | chr3.1:85794640-85794659 | None:intergenic | 15.0% |
| !!! | TTTTTGGAATATTGATAATA+TGG | + | chr3.1:85794641-85794660 | None:intergenic | 15.0% |
| !! | TATACTTGTAGAAAATATAG+GGG | + | chr3.1:85794943-85794962 | None:intergenic | 20.0% |
| !!! | AATTTTGGAAACAATTAACA+TGG | - | chr3.1:85794243-85794262 | MS.gene072957:intron | 20.0% |
| !!! | ATCCATGTTGAATTTTAAAA+AGG | + | chr3.1:85795097-85795116 | None:intergenic | 20.0% |
| !!! | CGATTAACTATATGTTTTAT+AGG | - | chr3.1:85793921-85793940 | MS.gene072957:intron | 20.0% |
| !!! | TCCATGTTGAATTTTAAAAA+GGG | + | chr3.1:85795096-85795115 | None:intergenic | 20.0% |
| !!! | TGAGGTTTTTTTTTATCAAA+TGG | + | chr3.1:85794356-85794375 | None:intergenic | 20.0% |
| !!! | TTTGGAATATTGATAATATG+GGG | + | chr3.1:85794639-85794658 | None:intergenic | 20.0% |
| ! | ATACTTGTAGAAAATATAGG+GGG | + | chr3.1:85794942-85794961 | None:intergenic | 25.0% |
| ! | GATACAATCTTACAATTTCA+AGG | + | chr3.1:85794607-85794626 | None:intergenic | 25.0% |
| ! | GTAAAGCTAAATACTCAATT+TGG | - | chr3.1:85794580-85794599 | MS.gene072957:CDS | 25.0% |
| ! | TAACACAATAAGACAATTGT+TGG | + | chr3.1:85794108-85794127 | None:intergenic | 25.0% |
| ! | TAACATGGTTGAATTTCAAA+GGG | - | chr3.1:85794258-85794277 | MS.gene072957:intron | 25.0% |
| ! | TAGTTCGTACAAAATATCAA+CGG | + | chr3.1:85794704-85794723 | None:intergenic | 25.0% |
| ! | TTAACATGGTTGAATTTCAA+AGG | - | chr3.1:85794257-85794276 | MS.gene072957:intron | 25.0% |
| ! | TTGGAATATTTATAACGTGA+AGG | - | chr3.1:85794847-85794866 | MS.gene072957:CDS | 25.0% |
| ! | TTTGAAGACAATTATGCATA+GGG | - | chr3.1:85793856-85793875 | MS.gene072957:intron | 25.0% |
| !! | AAGAACACAAAATTTTCTTG+TGG | - | chr3.1:85794035-85794054 | MS.gene072957:intron | 25.0% |
| !! | ATTTTGTGTTCTTCTTTCAA+TGG | + | chr3.1:85794028-85794047 | None:intergenic | 25.0% |
| !! | TTAATCGATTTCCGAATATA+AGG | + | chr3.1:85793908-85793927 | None:intergenic | 25.0% |
| !! | TTGATTTCGTTTCTTCTTTT+GGG | - | chr3.1:85793534-85793553 | MS.gene072957:intron | 25.0% |
| !! | TTGGAATATTGATAATATGG+GGG | + | chr3.1:85794638-85794657 | None:intergenic | 25.0% |
| !!! | ACCCTTTTTAAAATTCAACA+TGG | - | chr3.1:85795092-85795111 | MS.gene072957:CDS | 25.0% |
| !!! | ATACTTAGTTGATAATACAC+GGG | - | chr3.1:85794729-85794748 | MS.gene072957:CDS | 25.0% |
| !!! | GATACTTAGTTGATAATACA+CGG | - | chr3.1:85794728-85794747 | MS.gene072957:CDS | 25.0% |
| !!! | TATTTTCCTTTGAGAATCAA+CGG | - | chr3.1:85795013-85795032 | MS.gene072957:CDS | 25.0% |
| AATAACACATAGTCAGAAAG+AGG | - | chr3.1:85794195-85794214 | MS.gene072957:intron | 30.0% | |
| ACAATTATGCATAGGGTTTA+TGG | - | chr3.1:85793863-85793882 | MS.gene072957:intron | 30.0% | |
| ATTACTAACAAGCAAGTCAA+AGG | + | chr3.1:85795061-85795080 | None:intergenic | 30.0% | |
| CAAAACATCAAAACATGACT+CGG | - | chr3.1:85793208-85793227 | MS.gene072957:CDS | 30.0% | |
| CAGCACTTTAGTCATTTATT+TGG | + | chr3.1:85794982-85795001 | None:intergenic | 30.0% | |
| GTCATTGTTCCATAAGTAAA+GGG | + | chr3.1:85795141-85795160 | None:intergenic | 30.0% | |
| GTTTGAAGACAATTATGCAT+AGG | - | chr3.1:85793855-85793874 | MS.gene072957:intron | 30.0% | |
| TAATGTTCGAAAGATGTTCA+AGG | - | chr3.1:85795274-85795293 | MS.gene072957:CDS | 30.0% | |
| TAGGGTTTATGGAAAATTCA+TGG | - | chr3.1:85793874-85793893 | MS.gene072957:intron | 30.0% | |
| TATTTATAACGTGAAGGACT+AGG | - | chr3.1:85794853-85794872 | MS.gene072957:CDS | 30.0% | |
| TCTTTCTGACTATGTGTTAT+TGG | + | chr3.1:85794196-85794215 | None:intergenic | 30.0% | |
| TGGTTCATAGACCTTATATT+CGG | - | chr3.1:85793894-85793913 | MS.gene072957:intron | 30.0% | |
| TGTTACACAGTTTATAGAGA+AGG | - | chr3.1:85794123-85794142 | MS.gene072957:intron | 30.0% | |
| TTCGTTTATTTCGACATTGT+TGG | - | chr3.1:85793796-85793815 | MS.gene072957:intron | 30.0% | |
| TTGAGACTGAGAAACATAAT+GGG | - | chr3.1:85793951-85793970 | MS.gene072957:intron | 30.0% | |
| ! | AAATTTCTTCAAGTTCACCA+AGG | + | chr3.1:85794228-85794247 | None:intergenic | 30.0% |
| ! | AATTCAACATGGATTGTTTC+AGG | - | chr3.1:85795103-85795122 | MS.gene072957:CDS | 30.0% |
| ! | ATGTATTTGATAACAGATCC+AGG | - | chr3.1:85794779-85794798 | MS.gene072957:CDS | 30.0% |
| ! | ATTGATAATATGGGGGATTA+GGG | + | chr3.1:85794631-85794650 | None:intergenic | 30.0% |
| ! | GATTTAGAGCATGAATCTAT+TGG | + | chr3.1:85794418-85794437 | None:intergenic | 30.0% |
| ! | GGGATGAATTTTACATTAAG+TGG | - | chr3.1:85794749-85794768 | MS.gene072957:CDS | 30.0% |
| ! | TATTGATAATATGGGGGATT+AGG | + | chr3.1:85794632-85794651 | None:intergenic | 30.0% |
| ! | TCATGCTCTAAATCTATAGT+TGG | - | chr3.1:85794424-85794443 | MS.gene072957:CDS | 30.0% |
| ! | TGATTAACACTTCGCAATTT+TGG | + | chr3.1:85794670-85794689 | None:intergenic | 30.0% |
| ! | TGCAATTTCTGTGATCATTT+TGG | - | chr3.1:85794828-85794847 | MS.gene072957:CDS | 30.0% |
| ! | TGGTGAACTTGAAGAAATTT+TGG | - | chr3.1:85794228-85794247 | MS.gene072957:intron | 30.0% |
| ! | TTTGAGACTGAGAAACATAA+TGG | - | chr3.1:85793950-85793969 | MS.gene072957:intron | 30.0% |
| !! | ATTTTCCTTTGAGAATCAAC+GGG | - | chr3.1:85795014-85795033 | MS.gene072957:CDS | 30.0% |
| !! | GCAATTTTGGAGATCATTTT+TGG | + | chr3.1:85794657-85794676 | None:intergenic | 30.0% |
| !! | GTATTTAGCTTTACTCAAAC+AGG | + | chr3.1:85794574-85794593 | None:intergenic | 30.0% |
| !! | GTTGATTTCGTTTCTTCTTT+TGG | - | chr3.1:85793533-85793552 | MS.gene072957:intron | 30.0% |
| !! | TAAGGGGTTTGTTGAAATAT+TGG | - | chr3.1:85794170-85794189 | MS.gene072957:intron | 30.0% |
| !! | TGCTCTATATAGTCATTTTC+TGG | - | chr3.1:85794463-85794482 | MS.gene072957:CDS | 30.0% |
| !!! | ATTTTTGGGAGTATCATAAG+TGG | - | chr3.1:85793992-85794011 | MS.gene072957:intron | 30.0% |
| AAGGAACCAAAGCAAATCAA+AGG | + | chr3.1:85795042-85795061 | None:intergenic | 35.0% | |
| AGATGTGAAGAGAAAAACGT+TGG | - | chr3.1:85793502-85793521 | MS.gene072957:intron | 35.0% | |
| ATAGATCTAGGCTTATGCAA+AGG | + | chr3.1:85794073-85794092 | None:intergenic | 35.0% | |
| ATAGGAATGCCCAAATAATG+AGG | + | chr3.1:85794374-85794393 | None:intergenic | 35.0% | |
| ATCTTCTTGTCTTGATGCTA+AGG | - | chr3.1:85793751-85793770 | MS.gene072957:intron | 35.0% | |
| CGATTATGAGCCCTATAATT+TGG | + | chr3.1:85793635-85793654 | None:intergenic | 35.0% | |
| GAGCAATCAAATTGACAATG+TGG | + | chr3.1:85795163-85795182 | None:intergenic | 35.0% | |
| GCTGTGAAAATTCTTCTCTA+GGG | + | chr3.1:85795222-85795241 | None:intergenic | 35.0% | |
| GGTCATTGTTCCATAAGTAA+AGG | + | chr3.1:85795142-85795161 | None:intergenic | 35.0% | |
| GTTGGAGTTGTTTAATTCAG+AGG | - | chr3.1:85793814-85793833 | MS.gene072957:intron | 35.0% | |
| GTTTAATTCAGAGGATCCTA+GGG | - | chr3.1:85793823-85793842 | MS.gene072957:intron | 35.0% | |
| TAAACTCAGAATCCGAGAAA+CGG | - | chr3.1:85795357-85795376 | MS.gene072957:CDS | 35.0% | |
| TAGATCTAGGCTTATGCAAA+GGG | + | chr3.1:85794072-85794091 | None:intergenic | 35.0% | |
| TATAGGGCTCATAATCGAAT+TGG | - | chr3.1:85793638-85793657 | MS.gene072957:intron | 35.0% | |
| TATCCAATTCGCCAAAACAA+TGG | + | chr3.1:85794292-85794311 | None:intergenic | 35.0% | |
| TCGAAAGATGTTCAAGGAAA+TGG | - | chr3.1:85795280-85795299 | MS.gene072957:CDS | 35.0% | |
| TCGTACAAAATATCAACGGA+TGG | + | chr3.1:85794700-85794719 | None:intergenic | 35.0% | |
| TGATAGGTAGTATCACTTGA+CGG | + | chr3.1:85795190-85795209 | None:intergenic | 35.0% | |
| TGTTTAATTCAGAGGATCCT+AGG | - | chr3.1:85793822-85793841 | MS.gene072957:intron | 35.0% | |
| TTATGAGCCCTATAATTTGG+CGG | + | chr3.1:85793632-85793651 | None:intergenic | 35.0% | |
| TTGCATAAGCCTAGATCTAT+GGG | - | chr3.1:85794073-85794092 | MS.gene072957:intron | 35.0% | |
| TTTGCATAAGCCTAGATCTA+TGG | - | chr3.1:85794072-85794091 | MS.gene072957:intron | 35.0% | |
| ! | AGAAGAATTTTCACAGCCAT+TGG | - | chr3.1:85795225-85795244 | MS.gene072957:CDS | 35.0% |
| ! | CTGAGTTGTTGGAGATTTTT+GGG | - | chr3.1:85793978-85793997 | MS.gene072957:intron | 35.0% |
| ! | GACTCAACTTGCTTACAAAA+AGG | + | chr3.1:85793430-85793449 | None:intergenic | 35.0% |
| ! | TCGTAAACAAGTTGAAGATG+AGG | + | chr3.1:85793710-85793729 | None:intergenic | 35.0% |
| !!! | TCATGTTTTGATGTTTTGCG+AGG | + | chr3.1:85793206-85793225 | None:intergenic | 35.0% |
| !!! | TTGTGAACGGTTGTTTTTAC+CGG | + | chr3.1:85793276-85793295 | None:intergenic | 35.0% |
| AAAAACAACCGTTCACAAGG+TGG | - | chr3.1:85793278-85793297 | MS.gene072957:CDS | 40.0% | |
| AAGTAAACCCCCATAGATCT+AGG | + | chr3.1:85794085-85794104 | None:intergenic | 40.0% | |
| AATCGGAGAGACTAAAACAG+CGG | + | chr3.1:85795441-85795460 | None:intergenic | 40.0% | |
| CAGAAAGAGGTAATGTTCCT+TGG | - | chr3.1:85794208-85794227 | MS.gene072957:intron | 40.0% | |
| CATGAGCAGTTTACACTTTC+AGG | - | chr3.1:85794315-85794334 | MS.gene072957:CDS | 40.0% | |
| CTACACATTGCAAGAATAGC+TGG | + | chr3.1:85793578-85793597 | None:intergenic | 40.0% | |
| CTGAAAGAGCCCTTTACTTA+TGG | - | chr3.1:85795129-85795148 | MS.gene072957:CDS | 40.0% | |
| GAAAGGGTAAATGCCTAAGT+TGG | + | chr3.1:85794905-85794924 | None:intergenic | 40.0% | |
| GAGCTAGGAACATCCTTAAA+CGG | + | chr3.1:85793395-85793414 | None:intergenic | 40.0% | |
| GCAATTTCAGTGACCAACTT+AGG | - | chr3.1:85794889-85794908 | MS.gene072957:CDS | 40.0% | |
| GGCTGTGAAAATTCTTCTCT+AGG | + | chr3.1:85795223-85795242 | None:intergenic | 40.0% | |
| GGTAAAAACAACCGTTCACA+AGG | - | chr3.1:85793275-85793294 | MS.gene072957:CDS | 40.0% | |
| GGTTGAATTTCAAAGGGTCA+TGG | - | chr3.1:85794264-85794283 | MS.gene072957:intron | 40.0% | |
| GTTTAAGGATGTTCCTAGCT+CGG | - | chr3.1:85793394-85793413 | MS.gene072957:CDS | 40.0% | |
| TAATGGGATTGCTGAGTTGT+TGG | - | chr3.1:85793967-85793986 | MS.gene072957:intron | 40.0% | |
| TACACTGAGAACGACAAGTA+AGG | + | chr3.1:85795319-85795338 | None:intergenic | 40.0% | |
| TACTTGTCGTTCTCAGTGTA+AGG | - | chr3.1:85795319-85795338 | MS.gene072957:CDS | 40.0% | |
| TATAGAGAAGGAGCCTAAGT+TGG | - | chr3.1:85794135-85794154 | MS.gene072957:intron | 40.0% | |
| TATGAGCCCTATAATTTGGC+GGG | + | chr3.1:85793631-85793650 | None:intergenic | 40.0% | |
| TGATAACAGATCCAGGCAAA+GGG | - | chr3.1:85794786-85794805 | MS.gene072957:CDS | 40.0% | |
| TGCATAAGCCTAGATCTATG+GGG | - | chr3.1:85794074-85794093 | MS.gene072957:intron | 40.0% | |
| TTCAAACAATCCCTTTCCCT+AGG | + | chr3.1:85793842-85793861 | None:intergenic | 40.0% | |
| TTCTTGTCTTGATGCTAAGG+TGG | - | chr3.1:85793754-85793773 | MS.gene072957:intron | 40.0% | |
| TTTACCCTTTCTCGCTTCTT+TGG | - | chr3.1:85794914-85794933 | MS.gene072957:CDS | 40.0% | |
| ! | CGTTTTCCCGCCAAATTATA+GGG | - | chr3.1:85793622-85793641 | MS.gene072957:intron | 40.0% |
| ! | GCTGAGTTGTTGGAGATTTT+TGG | - | chr3.1:85793977-85793996 | MS.gene072957:intron | 40.0% |
| ! | TAGTTGGTCTAGTTGCAACT+TGG | - | chr3.1:85794440-85794459 | MS.gene072957:CDS | 40.0% |
| ! | TCTAGGGCTGGAAATATGAT+AGG | + | chr3.1:85795206-85795225 | None:intergenic | 40.0% |
| ! | TTGATAACAGATCCAGGCAA+AGG | - | chr3.1:85794785-85794804 | MS.gene072957:CDS | 40.0% |
| !! | TGAAAATTCTTCTCTAGGGC+TGG | + | chr3.1:85795218-85795237 | None:intergenic | 40.0% |
| !! | TTCAAGTTTTTCCCTTTGCC+TGG | + | chr3.1:85794800-85794819 | None:intergenic | 40.0% |
| !!! | GTACCATTGTTTTGGCGAAT+TGG | - | chr3.1:85794286-85794305 | MS.gene072957:intron | 40.0% |
| ACATCCTTAAACGGCACCAA+CGG | + | chr3.1:85793386-85793405 | None:intergenic | 45.0% | |
| AGGGCTCATAATCGAATTGG+TGG | - | chr3.1:85793641-85793660 | MS.gene072957:intron | 45.0% | |
| ATCACGATGCTTGCCAACTT+AGG | + | chr3.1:85794151-85794170 | None:intergenic | 45.0% | |
| ATTCAGAGGATCCTAGGGAA+AGG | - | chr3.1:85793828-85793847 | MS.gene072957:intron | 45.0% | |
| CAACGGTTCAATCAACGACA+CGG | + | chr3.1:85793369-85793388 | None:intergenic | 45.0% | |
| CACAACGTTCTTACCAGGAT+CGG | + | chr3.1:85793477-85793496 | None:intergenic | 45.0% | |
| CCATGCTTCATTCCGTTTCT+CGG | + | chr3.1:85795372-85795391 | None:intergenic | 45.0% | |
| GACCTCAGACTTCTACAAGA+GGG | + | chr3.1:85794518-85794537 | None:intergenic | 45.0% | |
| GCATAAGCCTAGATCTATGG+GGG | - | chr3.1:85794075-85794094 | MS.gene072957:intron | 45.0% | |
| GCTCATAATCGAATTGGTGG+CGG | - | chr3.1:85793644-85793663 | MS.gene072957:intron | 45.0% | |
| TGACCTCAGACTTCTACAAG+AGG | + | chr3.1:85794519-85794538 | None:intergenic | 45.0% | |
| TTCAGAGGATCCTAGGGAAA+GGG | - | chr3.1:85793829-85793848 | MS.gene072957:intron | 45.0% | |
| TTCTCCACAACGTTCTTACC+AGG | + | chr3.1:85793482-85793501 | None:intergenic | 45.0% | |
| TTGTCGTTCTCAGTGTAAGG+AGG | - | chr3.1:85795322-85795341 | MS.gene072957:CDS | 45.0% | |
| ! | AACCAGCTTTTGATCCTGCT+TGG | - | chr3.1:85793684-85793703 | MS.gene072957:intron | 45.0% |
| ! | AGGTTCATTTTCTCCGAGCT+AGG | + | chr3.1:85793410-85793429 | None:intergenic | 45.0% |
| ! | AGTTGGCAAGCATCGTGATA+AGG | - | chr3.1:85794152-85794171 | MS.gene072957:intron | 45.0% |
| ! | GCGTTTTCCCGCCAAATTAT+AGG | - | chr3.1:85793621-85793640 | MS.gene072957:intron | 45.0% |
| ! | GGGTCATGGTACCATTGTTT+TGG | - | chr3.1:85794278-85794297 | MS.gene072957:intron | 45.0% |
| ! | GTTGGCAAGCATCGTGATAA+GGG | - | chr3.1:85794153-85794172 | MS.gene072957:intron | 45.0% |
| ! | TTGGCAAGCATCGTGATAAG+GGG | - | chr3.1:85794154-85794173 | MS.gene072957:intron | 45.0% |
| !! | AGGAACCCGTTGATTCTCAA+AGG | + | chr3.1:85795022-85795041 | None:intergenic | 45.0% |
| !! | CGGGTTCCTTTGATTTGCTT+TGG | - | chr3.1:85795033-85795052 | MS.gene072957:CDS | 45.0% |
| !! | TGAGTTAAGTTGAGCACTGC+TGG | + | chr3.1:85795254-85795273 | None:intergenic | 45.0% |
| AGCGGATGAATTCCTTCTCG+CGG | + | chr3.1:85793327-85793346 | None:intergenic | 50.0% | |
| AGTTGAAGATGAGGCCAAGC+AGG | + | chr3.1:85793701-85793720 | None:intergenic | 50.0% | |
| ATCAACGACACGGTGCTTGT+CGG | + | chr3.1:85793359-85793378 | None:intergenic | 50.0% | |
| CATCGTTGCCACCTTGTGAA+CGG | + | chr3.1:85793289-85793308 | None:intergenic | 50.0% | |
| CCGAGAAACGGAATGAAGCA+TGG | - | chr3.1:85795369-85795388 | MS.gene072957:CDS | 50.0% | |
| CGATCCTGGTAAGAACGTTG+TGG | - | chr3.1:85793475-85793494 | MS.gene072957:CDS | 50.0% | |
| GACCCTCTTGTAGAAGTCTG+AGG | - | chr3.1:85794513-85794532 | MS.gene072957:CDS | 50.0% | |
| GAGAAGGAATTCATCCGCTG+CGG | - | chr3.1:85793328-85793347 | MS.gene072957:CDS | 50.0% | |
| GGCTCCAAAGAAGCGAGAAA+GGG | + | chr3.1:85794921-85794940 | None:intergenic | 50.0% | |
| GTTCACAAGGTGGCAACGAT+GGG | - | chr3.1:85793288-85793307 | MS.gene072957:CDS | 50.0% | |
| TTCACAAGGTGGCAACGATG+GGG | - | chr3.1:85793289-85793308 | MS.gene072957:CDS | 50.0% | |
| ! | CGTGTCGTTGATTGAACCGT+TGG | - | chr3.1:85793367-85793386 | MS.gene072957:CDS | 50.0% |
| ! | GCGTTTGATTTCACCGATCC+TGG | - | chr3.1:85793461-85793480 | MS.gene072957:CDS | 50.0% |
| ! | TGAGCACTGCTGGATTCCAA+TGG | + | chr3.1:85795244-85795263 | None:intergenic | 50.0% |
| !! | TGAACCGTTGGTGCCGTTTA+AGG | - | chr3.1:85793379-85793398 | MS.gene072957:CDS | 50.0% |
| CGTTCACAAGGTGGCAACGA+TGG | - | chr3.1:85793287-85793306 | MS.gene072957:CDS | 55.0% | |
| GGCCAAGCAGGATCAAAAGC+TGG | + | chr3.1:85793689-85793708 | None:intergenic | 55.0% | |
| GGGCTCCAAAGAAGCGAGAA+AGG | + | chr3.1:85794922-85794941 | None:intergenic | 55.0% | |
| TCAACGACACGGTGCTTGTC+GGG | + | chr3.1:85793358-85793377 | None:intergenic | 55.0% | |
| TCACAAGGTGGCAACGATGG+GGG | - | chr3.1:85793290-85793309 | MS.gene072957:CDS | 55.0% | |
| TGAATTCCTTCTCGCGGCGT+TGG | + | chr3.1:85793321-85793340 | None:intergenic | 55.0% | |
| ACAGCGGTGTTTCCGACTGC+AGG | + | chr3.1:85795425-85795444 | None:intergenic | 60.0% | |
| CACGATTCGTCTCGAGTCGC+CGG | - | chr3.1:85793254-85793273 | MS.gene072957:CDS | 60.0% | |
| GCCAGTCTCAAGCCTGCAGT+CGG | - | chr3.1:85795410-85795429 | MS.gene072957:CDS | 60.0% | |
| GCTTGTCGGGAAAACCGCAG+CGG | + | chr3.1:85793345-85793364 | None:intergenic | 60.0% | |
| GTAAAGCCAACGCCGCGAGA+AGG | - | chr3.1:85793312-85793331 | MS.gene072957:CDS | 60.0% | |
| TCCGACTGCAGGCTTGAGAC+TGG | + | chr3.1:85795414-85795433 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 85793176 | 85795463 | 85793176 | ID=MS.gene072957 |
| chr3.1 | mRNA | 85793176 | 85795463 | 85793176 | ID=MS.gene072957.t1;Parent=MS.gene072957 |
| chr3.1 | exon | 85794303 | 85795463 | 85794303 | ID=MS.gene072957.t1.exon1;Parent=MS.gene072957.t1 |
| chr3.1 | CDS | 85794303 | 85795463 | 85794303 | ID=cds.MS.gene072957.t1;Parent=MS.gene072957.t1 |
| chr3.1 | exon | 85793176 | 85793514 | 85793176 | ID=MS.gene072957.t1.exon2;Parent=MS.gene072957.t1 |
| chr3.1 | CDS | 85793176 | 85793514 | 85793176 | ID=cds.MS.gene072957.t1;Parent=MS.gene072957.t1 |
| Gene Sequence |
| Protein sequence |
