Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056396.t1 | PNY10460.1 | 94.1 | 391 | 22 | 1 | 1 | 391 | 12 | 401 | 4.20E-168 | 600.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056396.t1 | O04153 | 80.9 | 346 | 62 | 1 | 9 | 350 | 8 | 353 | 2.5e-137 | 490.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056396.t1 | A0A2K3P5A8 | 94.1 | 391 | 22 | 1 | 1 | 391 | 12 | 401 | 3.1e-168 | 600.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene056396 | 0.820429 | 6.89E-53 | -1.69E-46 |
| MS.gene049418 | MS.gene056396 | 0.814521 | 1.48E-51 | -1.69E-46 |
| MS.gene050630 | MS.gene056396 | 0.856771 | 2.57E-62 | -1.69E-46 |
| MS.gene051248 | MS.gene056396 | 0.812065 | 5.11E-51 | -1.69E-46 |
| MS.gene052731 | MS.gene056396 | 0.80889 | 2.48E-50 | -1.69E-46 |
| MS.gene052732 | MS.gene056396 | 0.815812 | 7.63E-52 | -1.69E-46 |
| MS.gene053144 | MS.gene056396 | 0.848481 | 5.96E-60 | -1.69E-46 |
| MS.gene054584 | MS.gene056396 | 0.839272 | 1.75E-57 | -1.69E-46 |
| MS.gene056228 | MS.gene056396 | 0.826821 | 2.20E-54 | -1.69E-46 |
| MS.gene056396 | MS.gene056598 | 0.900641 | 5.98E-78 | -1.69E-46 |
| MS.gene056396 | MS.gene059154 | 0.808783 | 2.61E-50 | -1.69E-46 |
| MS.gene056396 | MS.gene061840 | 0.844908 | 5.65E-59 | -1.69E-46 |
| MS.gene056396 | MS.gene061841 | 0.826317 | 2.90E-54 | -1.69E-46 |
| MS.gene056396 | MS.gene06258 | 0.800343 | 1.51E-48 | -1.69E-46 |
| MS.gene056396 | MS.gene06306 | 0.810619 | 1.05E-50 | -1.69E-46 |
| MS.gene056396 | MS.gene063163 | 0.826056 | 3.34E-54 | -1.69E-46 |
| MS.gene056396 | MS.gene063452 | 0.833093 | 6.50E-56 | -1.69E-46 |
| MS.gene056396 | MS.gene064896 | 0.817083 | 3.96E-52 | -1.69E-46 |
| MS.gene056396 | MS.gene06550 | 0.812864 | 3.42E-51 | -1.69E-46 |
| MS.gene056396 | MS.gene065805 | 0.826019 | 3.41E-54 | -1.69E-46 |
| MS.gene056396 | MS.gene066196 | 0.815774 | 7.78E-52 | -1.69E-46 |
| MS.gene056396 | MS.gene06793 | 0.832359 | 9.89E-56 | -1.69E-46 |
| MS.gene056396 | MS.gene071315 | 0.826401 | 2.77E-54 | -1.69E-46 |
| MS.gene056396 | MS.gene071316 | 0.831425 | 1.68E-55 | -1.69E-46 |
| MS.gene056396 | MS.gene07246 | 0.828466 | 8.85E-55 | -1.69E-46 |
| MS.gene056396 | MS.gene073023 | 0.806085 | 9.76E-50 | -1.69E-46 |
| MS.gene056396 | MS.gene09042 | 0.83605 | 1.17E-56 | -1.69E-46 |
| MS.gene056396 | MS.gene20166 | 0.800267 | 1.56E-48 | -1.69E-46 |
| MS.gene056396 | MS.gene20768 | 0.80886 | 2.52E-50 | -1.69E-46 |
| MS.gene056396 | MS.gene22813 | 0.836135 | 1.12E-56 | -1.69E-46 |
| MS.gene056396 | MS.gene23880 | 0.800973 | 1.12E-48 | -1.69E-46 |
| MS.gene056396 | MS.gene25904 | 0.814069 | 1.86E-51 | -1.69E-46 |
| MS.gene056396 | MS.gene25906 | 0.804162 | 2.47E-49 | -1.69E-46 |
| MS.gene056396 | MS.gene25907 | 0.816026 | 6.84E-52 | -1.69E-46 |
| MS.gene056396 | MS.gene26380 | 0.80047 | 1.42E-48 | -1.69E-46 |
| MS.gene056396 | MS.gene26387 | 0.80591 | 1.06E-49 | -1.69E-46 |
| MS.gene056396 | MS.gene26659 | 0.804054 | 2.60E-49 | -1.69E-46 |
| MS.gene056396 | MS.gene28326 | 0.941731 | 2.49E-101 | -1.69E-46 |
| MS.gene056396 | MS.gene31203 | 0.833834 | 4.25E-56 | -1.69E-46 |
| MS.gene056396 | MS.gene31204 | 0.841252 | 5.32E-58 | -1.69E-46 |
| MS.gene056396 | MS.gene31634 | 0.81204 | 5.18E-51 | -1.69E-46 |
| MS.gene056396 | MS.gene32024 | 0.800421 | 1.45E-48 | -1.69E-46 |
| MS.gene056396 | MS.gene34286 | 0.840963 | 6.33E-58 | -1.69E-46 |
| MS.gene056396 | MS.gene38303 | 0.842587 | 2.36E-58 | -1.69E-46 |
| MS.gene056396 | MS.gene38693 | 0.821938 | 3.09E-53 | -1.69E-46 |
| MS.gene056396 | MS.gene39052 | 0.808361 | 3.22E-50 | -1.69E-46 |
| MS.gene056396 | MS.gene41651 | 0.800839 | 1.19E-48 | -1.69E-46 |
| MS.gene056396 | MS.gene42512 | 0.801062 | 1.07E-48 | -1.69E-46 |
| MS.gene056396 | MS.gene43178 | 0.813134 | 2.98E-51 | -1.69E-46 |
| MS.gene056396 | MS.gene43740 | 0.86338 | 2.59E-64 | -1.69E-46 |
| MS.gene056396 | MS.gene43837 | 0.81304 | 3.13E-51 | -1.69E-46 |
| MS.gene056396 | MS.gene44783 | 0.80808 | 3.69E-50 | -1.69E-46 |
| MS.gene056396 | MS.gene44844 | 0.857495 | 1.57E-62 | -1.69E-46 |
| MS.gene056396 | MS.gene50479 | 0.802742 | 4.86E-49 | -1.69E-46 |
| MS.gene056396 | MS.gene52057 | 0.833258 | 5.91E-56 | -1.69E-46 |
| MS.gene056396 | MS.gene54543 | 0.815151 | 1.07E-51 | -1.69E-46 |
| MS.gene056396 | MS.gene55210 | 0.837385 | 5.36E-57 | -1.69E-46 |
| MS.gene056396 | MS.gene57097 | 0.845307 | 4.41E-59 | -1.69E-46 |
| MS.gene056396 | MS.gene58838 | 0.844898 | 5.68E-59 | -1.69E-46 |
| MS.gene056396 | MS.gene60118 | 0.843523 | 1.33E-58 | -1.69E-46 |
| MS.gene056396 | MS.gene65276 | 0.810011 | 1.43E-50 | -1.69E-46 |
| MS.gene056396 | MS.gene68218 | 0.800694 | 1.28E-48 | -1.69E-46 |
| MS.gene056396 | MS.gene68220 | 0.813748 | 2.19E-51 | -1.69E-46 |
| MS.gene056396 | MS.gene68886 | 0.821267 | 4.42E-53 | -1.69E-46 |
| MS.gene056396 | MS.gene69797 | 0.807729 | 4.38E-50 | -1.69E-46 |
| MS.gene056396 | MS.gene70580 | 0.812913 | 3.34E-51 | -1.69E-46 |
| MS.gene056396 | MS.gene72135 | 0.833959 | 3.95E-56 | -1.69E-46 |
| MS.gene056396 | MS.gene72136 | 0.837713 | 4.42E-57 | -1.69E-46 |
| MS.gene056396 | MS.gene74270 | 0.826427 | 2.73E-54 | -1.69E-46 |
| MS.gene056396 | MS.gene74272 | 0.819604 | 1.06E-52 | -1.69E-46 |
| MS.gene056396 | MS.gene74586 | 0.804243 | 2.37E-49 | -1.69E-46 |
| MS.gene056396 | MS.gene75670 | 0.842467 | 2.54E-58 | -1.69E-46 |
| MS.gene056396 | MS.gene77420 | 0.828393 | 9.22E-55 | -1.69E-46 |
| MS.gene056396 | MS.gene77734 | 0.805554 | 1.26E-49 | -1.69E-46 |
| MS.gene056396 | MS.gene79893 | 0.810803 | 9.61E-51 | -1.69E-46 |
| MS.gene056396 | MS.gene88718 | 0.809124 | 2.21E-50 | -1.69E-46 |
| MS.gene056396 | MS.gene89099 | 0.806884 | 6.62E-50 | -1.69E-46 |
| MS.gene056396 | MS.gene89974 | 0.802686 | 4.99E-49 | -1.69E-46 |
| MS.gene056396 | MS.gene90591 | 0.809029 | 2.32E-50 | -1.69E-46 |
| MS.gene056396 | MS.gene97156 | 0.822031 | 2.94E-53 | -1.69E-46 |
| MS.gene056396 | MS.gene97306 | 0.802645 | 5.09E-49 | -1.69E-46 |
| MS.gene056396 | MS.gene97762 | 0.8277 | 1.35E-54 | -1.69E-46 |
| MS.gene056396 | MS.gene99224 | 0.808836 | 2.55E-50 | -1.69E-46 |
| MS.gene056396 | MS.gene99805 | 0.800246 | 1.58E-48 | -1.69E-46 |
| MS.gene056396 | MS.gene99878 | 0.818388 | 2.01E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene44181 | MS.gene056396 | PPI |
| MS.gene40797 | MS.gene056396 | PPI |
| MS.gene005307 | MS.gene056396 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056396.t1 | MTR_4g068080 | 96.562 | 349 | 12 | 0 | 4 | 352 | 3 | 351 | 0.0 | 692 |
| MS.gene056396.t1 | MTR_7g080370 | 81.871 | 342 | 62 | 0 | 9 | 350 | 9 | 350 | 0.0 | 603 |
| MS.gene056396.t1 | MTR_7g080370 | 81.871 | 342 | 62 | 0 | 9 | 350 | 9 | 350 | 0.0 | 603 |
| MS.gene056396.t1 | MTR_1g083960 | 62.805 | 328 | 122 | 0 | 25 | 352 | 24 | 351 | 8.13e-151 | 433 |
| MS.gene056396.t1 | MTR_3g098430 | 33.835 | 399 | 200 | 14 | 3 | 345 | 6 | 396 | 1.23e-51 | 181 |
| MS.gene056396.t1 | MTR_3g098430 | 33.835 | 399 | 200 | 14 | 3 | 345 | 6 | 396 | 1.60e-51 | 181 |
| MS.gene056396.t1 | MTR_8g095680 | 33.005 | 406 | 188 | 14 | 9 | 345 | 9 | 399 | 1.22e-50 | 178 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056396.t1 | AT1G08450 | 78.613 | 346 | 70 | 1 | 9 | 350 | 8 | 353 | 0.0 | 583 |
| MS.gene056396.t1 | AT1G08450 | 72.254 | 346 | 67 | 2 | 9 | 350 | 8 | 328 | 0.0 | 521 |
| MS.gene056396.t1 | AT1G56340 | 61.032 | 349 | 133 | 1 | 1 | 349 | 1 | 346 | 1.11e-153 | 440 |
| MS.gene056396.t1 | AT1G56340 | 60.511 | 352 | 136 | 1 | 1 | 352 | 1 | 349 | 2.05e-153 | 440 |
| MS.gene056396.t1 | AT1G09210 | 60.983 | 346 | 135 | 0 | 4 | 349 | 1 | 346 | 2.23e-152 | 437 |
| MS.gene056396.t1 | AT1G08450 | 58.790 | 347 | 83 | 4 | 9 | 350 | 8 | 299 | 5.09e-135 | 391 |
| MS.gene056396.t1 | AT5G61790 | 33.586 | 396 | 198 | 13 | 7 | 345 | 5 | 392 | 9.99e-62 | 207 |
| MS.gene056396.t1 | AT5G07340 | 34.555 | 382 | 187 | 13 | 19 | 345 | 29 | 402 | 6.23e-49 | 174 |
| MS.gene056396.t1 | AT5G07340 | 34.400 | 375 | 183 | 13 | 26 | 345 | 28 | 394 | 7.52e-48 | 171 |
Find 105 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATGCCAACATACTTTAT+TGG | 0.145055 | 4.1:-33897648 | None:intergenic |
| GTATGCTGGATTAGGAATTT+TGG | 0.215109 | 4.1:-33897138 | None:intergenic |
| CACCAGGGTTCTGTTCTTAT+TGG | 0.259124 | 4.1:-33894859 | None:intergenic |
| GGTTACATCAAACTTCTTTC+CGG | 0.268805 | 4.1:+33894927 | MS.gene056396:CDS |
| CTCTGGTATCTTTGCAGATA+TGG | 0.277207 | 4.1:-33894832 | None:intergenic |
| AGAGAGAGGGGCAGTAGATA+TGG | 0.294547 | 4.1:+33898201 | MS.gene056396:CDS |
| TTCCACTTTCCCTTGTAGTT+GGG | 0.297629 | 4.1:-33897276 | None:intergenic |
| TTGGCGGTGATACTCCTTAT+AGG | 0.301600 | 4.1:+33894970 | MS.gene056396:CDS |
| CTTCCACTTTCCCTTGTAGT+TGG | 0.304273 | 4.1:-33897277 | None:intergenic |
| TCCTGATCCGAAAGCCAAAA+AGG | 0.307351 | 4.1:+33896948 | MS.gene056396:CDS |
| CACTCCAGATCCTTTCTAAT+AGG | 0.315359 | 4.1:-33896048 | None:intergenic |
| CAAGGATGTCAAAGCGAAAA+AGG | 0.316348 | 4.1:+33896206 | MS.gene056396:CDS |
| TTAAGTATACTGCTGGAAAA+TGG | 0.316759 | 4.1:+33894319 | MS.gene056396:CDS |
| GCTTAATGCAGTTTGATGTT+TGG | 0.329009 | 4.1:+33895958 | MS.gene056396:intron |
| ACCTCTGGTTTGACATCATC+AGG | 0.330343 | 4.1:-33896498 | None:intergenic |
| AAGAAATCAACGAACCTATA+AGG | 0.347952 | 4.1:-33894984 | None:intergenic |
| GATAATCGAGAAAGAGATTC+TGG | 0.369820 | 4.1:+33896141 | MS.gene056396:CDS |
| TATGTCAATCAGAAGAAGTT+TGG | 0.379337 | 4.1:+33894951 | MS.gene056396:CDS |
| TCTATTGCAGCCAGCAGATT+GGG | 0.394070 | 4.1:+33896452 | MS.gene056396:intron |
| TTTGTTTCCTGCAGAATTTG+AGG | 0.400410 | 4.1:+33897599 | MS.gene056396:intron |
| GGTCCTCTGTATGCTGGATT+AGG | 0.400688 | 4.1:-33897146 | None:intergenic |
| TTCCATGGTCCTCTGTATGC+TGG | 0.401308 | 4.1:-33897152 | None:intergenic |
| GCGAAAAGAGGAGGAGAGAG+AGG | 0.405303 | 4.1:+33898187 | MS.gene056396:CDS |
| AATGAAAAGTGATTATTAGA+AGG | 0.405531 | 4.1:-33894061 | None:intergenic |
| CTCTATTGCAGCCAGCAGAT+TGG | 0.417061 | 4.1:+33896451 | MS.gene056396:intron |
| CTTCTTCTGATTGACATAAC+CGG | 0.420142 | 4.1:-33894946 | None:intergenic |
| ATGATGAAGATGATGGACTA+TGG | 0.427549 | 4.1:+33897108 | MS.gene056396:CDS |
| TCCACTTTCCCTTGTAGTTG+GGG | 0.429764 | 4.1:-33897275 | None:intergenic |
| TGCAGATATGGCAAAATGCT+TGG | 0.431842 | 4.1:-33894820 | None:intergenic |
| GTATTCTATTAAATTTGAAC+AGG | 0.436462 | 4.1:+33894887 | MS.gene056396:CDS |
| CTGTTCTTATTGGTCAACTC+TGG | 0.442357 | 4.1:-33894849 | None:intergenic |
| TTATCCTATTAGAAAGGATC+TGG | 0.449919 | 4.1:+33896044 | MS.gene056396:CDS |
| ATTATCGACAAGGACACTAT+AGG | 0.464406 | 4.1:-33896124 | None:intergenic |
| CTGGTAGCATGTACACAGAT+TGG | 0.467406 | 4.1:+33896160 | MS.gene056396:CDS |
| TGTTTGACTAGCCTGCTGAC+TGG | 0.472731 | 4.1:+33897084 | MS.gene056396:intron |
| CCATGTTATATTGTCATACC+AGG | 0.473885 | 4.1:+33896014 | MS.gene056396:CDS |
| GGGTAGGTACCTTTGTCATC+AGG | 0.474286 | 4.1:-33894351 | None:intergenic |
| GGTTTCAGCACATAAAGATC+AGG | 0.477024 | 4.1:-33897627 | None:intergenic |
| CGAAAAGAGGAGGAGAGAGA+GGG | 0.477617 | 4.1:+33898188 | MS.gene056396:CDS |
| TGAAGAACCTTTCGTTTCCA+TGG | 0.479653 | 4.1:-33897167 | None:intergenic |
| CAAGAGAAGAGGGCGAAAAG+AGG | 0.485876 | 4.1:+33898175 | MS.gene056396:CDS |
| TTTGAATTTCAGGTAAAGGC+TGG | 0.487948 | 4.1:+33897806 | MS.gene056396:intron |
| GTTTGACTAGCCTGCTGACT+GGG | 0.491942 | 4.1:+33897085 | MS.gene056396:intron |
| GCTCGAAGGGCAAGAGAAGA+GGG | 0.503612 | 4.1:+33898165 | MS.gene056396:CDS |
| ATGCAGTTTGATGTTTGGAC+CGG | 0.506719 | 4.1:+33895963 | MS.gene056396:intron |
| TGGTAGCATGTACACAGATT+GGG | 0.507286 | 4.1:+33896161 | MS.gene056396:CDS |
| TTCGGATCAGGAATTTCCGC+TGG | 0.508027 | 4.1:-33896937 | None:intergenic |
| GCAGTAGATATGGAGATAAG+AGG | 0.516281 | 4.1:+33898211 | MS.gene056396:CDS |
| GTTTGTGTACCACATAGATC+CGG | 0.516433 | 4.1:-33895982 | None:intergenic |
| TCTCTATCATCCCAATCTGC+TGG | 0.517078 | 4.1:-33896462 | None:intergenic |
| AAGATGGCTGGAAGAGTCGT+TGG | 0.518857 | 4.1:+33894253 | MS.gene056396:intron |
| GAAAAGAGGAGGAGAGAGAG+GGG | 0.519240 | 4.1:+33898189 | MS.gene056396:CDS |
| CCTTTGTCATCAGGATCAGC+AGG | 0.522682 | 4.1:-33894342 | None:intergenic |
| CAGGATATTGAGTGTGGTGG+TGG | 0.525477 | 4.1:+33894906 | MS.gene056396:CDS |
| GGCTCGAAGGGCAAGAGAAG+AGG | 0.530539 | 4.1:+33898164 | MS.gene056396:CDS |
| AATCAAGAACCCCAACTACA+AGG | 0.530823 | 4.1:+33897266 | MS.gene056396:CDS |
| AGATGGCTGGAAGAGTCGTT+GGG | 0.532596 | 4.1:+33894254 | MS.gene056396:intron |
| GGTACCTTTAAGTATACTGC+TGG | 0.536384 | 4.1:+33894312 | MS.gene056396:CDS |
| GACTGGGATGATGAAGATGA+TGG | 0.536970 | 4.1:+33897101 | MS.gene056396:CDS |
| ACCCCAACTACAAGGGAAAG+TGG | 0.537866 | 4.1:+33897274 | MS.gene056396:CDS |
| TAATAGGATAATTCTGCCCC+TGG | 0.538118 | 4.1:-33896032 | None:intergenic |
| CTCTTTCTCGATTATCGACA+AGG | 0.541665 | 4.1:-33896134 | None:intergenic |
| TTCGAAGAAGACTTCAGCAA+AGG | 0.543435 | 4.1:-33894087 | None:intergenic |
| CCTTCCTCCAAGGAAAATCA+AGG | 0.544194 | 4.1:+33896188 | MS.gene056396:CDS |
| GTCAATCAGAAGAAGTTTGG+CGG | 0.550880 | 4.1:+33894954 | MS.gene056396:CDS |
| GCAGAATTATCCTATTAGAA+AGG | 0.550971 | 4.1:+33896038 | MS.gene056396:CDS |
| AGGGAAAGTGGAAGACTCCA+TGG | 0.551615 | 4.1:+33897286 | MS.gene056396:CDS |
| AGGACACTATAGGAGGCATC+AGG | 0.553777 | 4.1:-33896114 | None:intergenic |
| TAATAGAATACTGAAGCACC+AGG | 0.555033 | 4.1:-33894875 | None:intergenic |
| TCTTCATCATCCCAGTCAGC+AGG | 0.556291 | 4.1:-33897095 | None:intergenic |
| TGTTGGCATTGAAGTGTGGC+AGG | 0.558687 | 4.1:+33897659 | MS.gene056396:CDS |
| GAGATAAGAGGCGCCGTAGG+AGG | 0.561496 | 4.1:+33898223 | MS.gene056396:CDS |
| ATTTCTATACATTCATTCTG+AGG | 0.562782 | 4.1:+33896091 | MS.gene056396:CDS |
| AAAAGGAGTGAAGGAAAAGC+AGG | 0.572283 | 4.1:+33894291 | MS.gene056396:CDS |
| ATGGAGATAAGAGGCGCCGT+AGG | 0.572887 | 4.1:+33898220 | MS.gene056396:CDS |
| AAGAAGGGCTCGGGAAGAAG+AGG | 0.584687 | 4.1:+33898042 | MS.gene056396:CDS |
| TAATTATGTAGGAGGCTCGA+AGG | 0.586649 | 4.1:+33898151 | MS.gene056396:intron |
| GTACCTGGGTTATCAATCCA+TGG | 0.586860 | 4.1:-33897303 | None:intergenic |
| TCTGATTGGAAAAGGAGTGA+AGG | 0.589188 | 4.1:+33894282 | MS.gene056396:CDS |
| GAGAAGAGGGCGAAAAGAGG+AGG | 0.590636 | 4.1:+33898178 | MS.gene056396:CDS |
| ATCAAGAACCCCAACTACAA+GGG | 0.604238 | 4.1:+33897267 | MS.gene056396:CDS |
| AGAAAAGGCTTACCCTCCTA+CGG | 0.611772 | 4.1:-33898236 | None:intergenic |
| CTGAAACCAATAAAGTATGT+TGG | 0.613261 | 4.1:+33897642 | MS.gene056396:CDS |
| AGATAAGAGGCGCCGTAGGA+GGG | 0.614360 | 4.1:+33898224 | MS.gene056396:CDS |
| CCTGGTATGACAATATAACA+TGG | 0.616973 | 4.1:-33896014 | None:intergenic |
| AATTATGTAGGAGGCTCGAA+GGG | 0.625683 | 4.1:+33898152 | MS.gene056396:intron |
| TTCTTCGAAGAAACATTCCA+AGG | 0.625841 | 4.1:+33894101 | MS.gene056396:CDS |
| ATTGGGACATCCTTCCTCCA+AGG | 0.634489 | 4.1:+33896178 | MS.gene056396:CDS |
| ATCGACAAGGACACTATAGG+AGG | 0.637459 | 4.1:-33896121 | None:intergenic |
| ATGTTTGGACCGGATCTATG+TGG | 0.646001 | 4.1:+33895973 | MS.gene056396:CDS |
| CCTCTGGTTTGACATCATCA+GGG | 0.652041 | 4.1:-33896497 | None:intergenic |
| CATGTTATATTGTCATACCA+GGG | 0.660252 | 4.1:+33896015 | MS.gene056396:CDS |
| TTTGAACAGGATATTGAGTG+TGG | 0.661470 | 4.1:+33894900 | MS.gene056396:CDS |
| CAGAGGACCATGGAAACGAA+AGG | 0.663800 | 4.1:+33897160 | MS.gene056396:CDS |
| GGGATATGATTCAATTCCAG+CGG | 0.666694 | 4.1:+33896921 | MS.gene056396:intron |
| ATGTTATATTGTCATACCAG+GGG | 0.671492 | 4.1:+33896016 | MS.gene056396:CDS |
| ATCCAGCATACAGAGGACCA+TGG | 0.675114 | 4.1:+33897150 | MS.gene056396:CDS |
| CCCTGATGATGTCAAACCAG+AGG | 0.679467 | 4.1:+33896497 | MS.gene056396:CDS |
| ATTCCTAATCCAGCATACAG+AGG | 0.680448 | 4.1:+33897143 | MS.gene056396:CDS |
| GACCAATAAGAACAGAACCC+TGG | 0.691427 | 4.1:+33894857 | MS.gene056396:CDS |
| AGTATGTTGGCATTGAAGTG+TGG | 0.694735 | 4.1:+33897655 | MS.gene056396:CDS |
| GAACAGGATATTGAGTGTGG+TGG | 0.695916 | 4.1:+33894903 | MS.gene056396:CDS |
| CCTGCTGATCCTGATGACAA+AGG | 0.699272 | 4.1:+33894342 | MS.gene056396:CDS |
| AATAGAATACTGAAGCACCA+GGG | 0.711638 | 4.1:-33894874 | None:intergenic |
| ACTCCATGGATTGATAACCC+AGG | 0.732011 | 4.1:+33897300 | MS.gene056396:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAAATTATCAAAATATAA+CGG | - | chr4.1:33897792-33897811 | None:intergenic | 10.0% |
| !!! | TACTATAATATACTATTTTT+AGG | - | chr4.1:33896796-33896815 | None:intergenic | 10.0% |
| !!! | TTTTATATATATTTCCTTAA+AGG | - | chr4.1:33896665-33896684 | None:intergenic | 10.0% |
| !! | AAATTATTAAACACGAAAAA+AGG | - | chr4.1:33897065-33897084 | None:intergenic | 15.0% |
| !! | AAGAATATATGGTTAATAAT+AGG | + | chr4.1:33897888-33897907 | MS.gene056396:intron | 15.0% |
| !! | AGAATATATGGTTAATAATA+GGG | + | chr4.1:33897889-33897908 | MS.gene056396:intron | 15.0% |
| !! | ATAAAAATTTGTAATGTTTC+AGG | - | chr4.1:33897564-33897583 | None:intergenic | 15.0% |
| !! | ATAGTATATTATAGTAAGAA+TGG | + | chr4.1:33896800-33896819 | MS.gene056396:intron | 15.0% |
| !! | ATTTGATGTTATAATTATGT+AGG | + | chr4.1:33898140-33898159 | MS.gene056396:intron | 15.0% |
| !! | TAAAAATTTGTAATGTTTCA+GGG | - | chr4.1:33897563-33897582 | None:intergenic | 15.0% |
| !! | TACATAATTATAACATCAAA+TGG | - | chr4.1:33898141-33898160 | None:intergenic | 15.0% |
| !! | TATATATAAAATTAGAAACC+TGG | + | chr4.1:33896674-33896693 | MS.gene056396:intron | 15.0% |
| !!! | ATAATCATATTTGTTTTTGA+AGG | + | chr4.1:33898111-33898130 | MS.gene056396:intron | 15.0% |
| !!! | ATTTTGATAATTTGAATTTC+AGG | + | chr4.1:33897796-33897815 | MS.gene056396:intron | 15.0% |
| !!! | TAAATTTTCCTATTAAAAAG+AGG | - | chr4.1:33895259-33895278 | None:intergenic | 15.0% |
| !!! | TAATCATATTTGTTTTTGAA+GGG | + | chr4.1:33898112-33898131 | MS.gene056396:intron | 15.0% |
| !!! | TTATTCTTTTTAAGTTTTGT+CGG | + | chr4.1:33896716-33896735 | MS.gene056396:intron | 15.0% |
| !! | AAAAAAAAAAAAAAGATGGC+TGG | + | chr4.1:33894241-33894260 | MS.gene056396:intron | 20.0% |
| !! | AAAAATTTGTAATGTTTCAG+GGG | - | chr4.1:33897562-33897581 | None:intergenic | 20.0% |
| !! | AAACAACTCAAACATTATAT+AGG | + | chr4.1:33896361-33896380 | MS.gene056396:intron | 20.0% |
| !! | AAATTTACAATGACATTGTA+TGG | - | chr4.1:33896853-33896872 | None:intergenic | 20.0% |
| !! | AATGAAAAGTGATTATTAGA+AGG | - | chr4.1:33894064-33894083 | None:intergenic | 20.0% |
| !! | AATTTACAATGACATTGTAT+GGG | - | chr4.1:33896852-33896871 | None:intergenic | 20.0% |
| !! | AGTTGTTACAAACTAAATAA+CGG | - | chr4.1:33897948-33897967 | None:intergenic | 20.0% |
| !! | ATTGAATGTAATCAATGTAT+CGG | + | chr4.1:33895787-33895806 | MS.gene056396:intron | 20.0% |
| !! | CAAAATTTATGTATAGCATA+TGG | + | chr4.1:33897475-33897494 | MS.gene056396:intron | 20.0% |
| !! | GTATTCTATTAAATTTGAAC+AGG | + | chr4.1:33894887-33894906 | MS.gene056396:CDS | 20.0% |
| !! | TAAAATCAGTAATTACAAGA+AGG | - | chr4.1:33894446-33894465 | None:intergenic | 20.0% |
| !! | TATATATATTTCCTTAAAGG+TGG | - | chr4.1:33896662-33896681 | None:intergenic | 20.0% |
| !! | TTCTCAAATTATTATAGTGT+CGG | - | chr4.1:33895758-33895777 | None:intergenic | 20.0% |
| !!! | AATCATATTTGTTTTTGAAG+GGG | + | chr4.1:33898113-33898132 | MS.gene056396:intron | 20.0% |
| !!! | ATAATTTGAATTTCAGGTAA+AGG | + | chr4.1:33897802-33897821 | MS.gene056396:intron | 20.0% |
| !!! | ATGTCATTGTAAATTTTAGT+TGG | + | chr4.1:33896857-33896876 | MS.gene056396:intron | 20.0% |
| !!! | CATATGCTATACATAAATTT+TGG | - | chr4.1:33897477-33897496 | None:intergenic | 20.0% |
| !!! | TATTCTTTTTAAGTTTTGTC+GGG | + | chr4.1:33896717-33896736 | MS.gene056396:intron | 20.0% |
| !!! | TCTAATTTTGATCAAACAAA+AGG | + | chr4.1:33895210-33895229 | MS.gene056396:intron | 20.0% |
| !!! | TGTGTATTTTAATTGTTTTG+TGG | + | chr4.1:33895011-33895030 | MS.gene056396:intron | 20.0% |
| !!! | TTTTTCATATAAGCTATTCT+GGG | + | chr4.1:33894566-33894585 | MS.gene056396:intron | 20.0% |
| !!! | TTTTTTCATATAAGCTATTC+TGG | + | chr4.1:33894565-33894584 | MS.gene056396:intron | 20.0% |
| ! | AAAGACTGTAGAATAACTAT+CGG | - | chr4.1:33895539-33895558 | None:intergenic | 25.0% |
| ! | AACCAATGAGAGAAATTTAA+AGG | - | chr4.1:33895513-33895532 | None:intergenic | 25.0% |
| ! | AATTACAAGAAGGAATTCAA+TGG | - | chr4.1:33894436-33894455 | None:intergenic | 25.0% |
| ! | ACTAAATAAATACGCGTATT+TGG | + | chr4.1:33897015-33897034 | MS.gene056396:intron | 25.0% |
| ! | ACTTCTAAATTAGTGTTAGT+TGG | + | chr4.1:33896233-33896252 | MS.gene056396:intron | 25.0% |
| ! | AGCATTGTAACATTCAAATA+AGG | - | chr4.1:33896281-33896300 | None:intergenic | 25.0% |
| ! | ATATATGGTTAATAATAGGG+AGG | + | chr4.1:33897892-33897911 | MS.gene056396:intron | 25.0% |
| ! | ATATTTAAAAACAAGCAGAG+TGG | - | chr4.1:33897433-33897452 | None:intergenic | 25.0% |
| ! | ATCGTGTTAACTTTCTTTAT+TGG | + | chr4.1:33895588-33895607 | MS.gene056396:intron | 25.0% |
| ! | ATTTACAATGACATTGTATG+GGG | - | chr4.1:33896851-33896870 | None:intergenic | 25.0% |
| ! | ATTTCTATACATTCATTCTG+AGG | + | chr4.1:33896091-33896110 | MS.gene056396:CDS | 25.0% |
| ! | CACAAGTTATTTAATGTTGA+AGG | + | chr4.1:33895866-33895885 | MS.gene056396:intron | 25.0% |
| ! | CTGCAATAGAGAAAAAAAAA+AGG | - | chr4.1:33896442-33896461 | None:intergenic | 25.0% |
| ! | GAGAGAAATTTAAAGGTAAA+TGG | - | chr4.1:33895506-33895525 | None:intergenic | 25.0% |
| ! | GCTTAAAAAATAATGTACCT+GGG | - | chr4.1:33897320-33897339 | None:intergenic | 25.0% |
| ! | TACCTTTAAATTTCTCTCAT+TGG | + | chr4.1:33895508-33895527 | MS.gene056396:intron | 25.0% |
| ! | TCCTATTAAAAAGAGGAAAT+AGG | - | chr4.1:33895252-33895271 | None:intergenic | 25.0% |
| ! | TGATGTTATAATTATGTAGG+AGG | + | chr4.1:33898143-33898162 | MS.gene056396:intron | 25.0% |
| ! | TGCTTAAAAAATAATGTACC+TGG | - | chr4.1:33897321-33897340 | None:intergenic | 25.0% |
| ! | TTCTGTTAGTTGATTAACAT+TGG | + | chr4.1:33894203-33894222 | MS.gene056396:intron | 25.0% |
| ! | TTTCTCTACCTTTAACTATT+GGG | + | chr4.1:33895556-33895575 | MS.gene056396:intron | 25.0% |
| !! | AACAAACAAACAAACCTTTT+TGG | - | chr4.1:33896965-33896984 | None:intergenic | 25.0% |
| !! | AATAAGTTGAAAACAGCTTA+TGG | + | chr4.1:33894600-33894619 | MS.gene056396:intron | 25.0% |
| !! | ACCTATTTCCTCTTTTTAAT+AGG | + | chr4.1:33895248-33895267 | MS.gene056396:intron | 25.0% |
| !! | AGAAGTACAAGAAAACATAA+AGG | - | chr4.1:33894187-33894206 | None:intergenic | 25.0% |
| !! | ATAAGTTGAAAACAGCTTAT+GGG | + | chr4.1:33894601-33894620 | MS.gene056396:intron | 25.0% |
| !! | GTTTGAGATTTAGAAATTCT+TGG | + | chr4.1:33895033-33895052 | MS.gene056396:intron | 25.0% |
| !! | TGTGATATTGAACTGTTTTA+AGG | + | chr4.1:33897378-33897397 | MS.gene056396:intron | 25.0% |
| !! | TTTTCATATAAGCTATTCTG+GGG | + | chr4.1:33894567-33894586 | MS.gene056396:intron | 25.0% |
| !!! | AGGTACATTATTTTTTAAGC+AGG | + | chr4.1:33897320-33897339 | MS.gene056396:intron | 25.0% |
| !!! | ATTCTTTTTAAGTTTTGTCG+GGG | + | chr4.1:33896718-33896737 | MS.gene056396:intron | 25.0% |
| AAAGGATCTTGAAAAGTCAA+AGG | - | chr4.1:33894169-33894188 | None:intergenic | 30.0% | |
| AAGAAATCAACGAACCTATA+AGG | - | chr4.1:33894987-33895006 | None:intergenic | 30.0% | |
| AAGGAACTTATCTTCTAACA+GGG | + | chr4.1:33895380-33895399 | MS.gene056396:intron | 30.0% | |
| ATAACACCATTGGTCATATT+TGG | - | chr4.1:33894741-33894760 | None:intergenic | 30.0% | |
| ATATTGTGCATTTGAGTAAG+AGG | - | chr4.1:33894375-33894394 | None:intergenic | 30.0% | |
| ATCAGTGTAATGTATTGAGT+AGG | + | chr4.1:33895918-33895937 | MS.gene056396:intron | 30.0% | |
| ATGTATAGCATATGGACATA+TGG | + | chr4.1:33897483-33897502 | MS.gene056396:intron | 30.0% | |
| ATGTGCATGTAAAACCTTAA+TGG | + | chr4.1:33896555-33896574 | MS.gene056396:intron | 30.0% | |
| ATGTTATATTGTCATACCAG+GGG | + | chr4.1:33896016-33896035 | MS.gene056396:CDS | 30.0% | |
| ATTACACTGATAGAACAACT+AGG | - | chr4.1:33895909-33895928 | None:intergenic | 30.0% | |
| ATTAGTCCAAATATGACCAA+TGG | + | chr4.1:33894732-33894751 | MS.gene056396:intron | 30.0% | |
| CATGTTATATTGTCATACCA+GGG | + | chr4.1:33896015-33896034 | MS.gene056396:CDS | 30.0% | |
| CTAATTGTCTTGATATTGCA+GGG | + | chr4.1:33896901-33896920 | MS.gene056396:intron | 30.0% | |
| CTGAAACCAATAAAGTATGT+TGG | + | chr4.1:33897642-33897661 | MS.gene056396:CDS | 30.0% | |
| CTTTAGACTTGATATATGAC+AGG | - | chr4.1:33895478-33895497 | None:intergenic | 30.0% | |
| CTTTCTCTACCTTTAACTAT+TGG | + | chr4.1:33895555-33895574 | MS.gene056396:intron | 30.0% | |
| GAAGATTACCCAATAGTTAA+AGG | - | chr4.1:33895567-33895586 | None:intergenic | 30.0% | |
| GATTTAGAAATTCTTGGACT+TGG | + | chr4.1:33895039-33895058 | MS.gene056396:intron | 30.0% | |
| GCAAACAATAAAAAAGGCAA+AGG | - | chr4.1:33896535-33896554 | None:intergenic | 30.0% | |
| GCACATGCAAACAATAAAAA+AGG | - | chr4.1:33896541-33896560 | None:intergenic | 30.0% | |
| GCAGAATTATCCTATTAGAA+AGG | + | chr4.1:33896038-33896057 | MS.gene056396:CDS | 30.0% | |
| GCTTATACATAAGCACTTAT+AGG | - | chr4.1:33894512-33894531 | None:intergenic | 30.0% | |
| GGACAGTTTAATGATATGTT+TGG | - | chr4.1:33897456-33897475 | None:intergenic | 30.0% | |
| TAAGCACTTGTAAGATTGTT+TGG | - | chr4.1:33894689-33894708 | None:intergenic | 30.0% | |
| TATGTCAATCAGAAGAAGTT+TGG | + | chr4.1:33894951-33894970 | MS.gene056396:CDS | 30.0% | |
| TATTGTGCATTTGAGTAAGA+GGG | - | chr4.1:33894374-33894393 | None:intergenic | 30.0% | |
| TCAATGCCAACATACTTTAT+TGG | - | chr4.1:33897651-33897670 | None:intergenic | 30.0% | |
| TCAGTGTAATGTATTGAGTA+GGG | + | chr4.1:33895919-33895938 | MS.gene056396:intron | 30.0% | |
| TCATATGAGCGATAGATAAA+TGG | + | chr4.1:33896620-33896639 | MS.gene056396:intron | 30.0% | |
| TCTAATTGTCTTGATATTGC+AGG | + | chr4.1:33896900-33896919 | MS.gene056396:intron | 30.0% | |
| TGTTATTAGTTATTGCAGTC+TGG | + | chr4.1:33896316-33896335 | MS.gene056396:intron | 30.0% | |
| TTAAGTATACTGCTGGAAAA+TGG | + | chr4.1:33894319-33894338 | MS.gene056396:CDS | 30.0% | |
| TTATCCTATTAGAAAGGATC+TGG | + | chr4.1:33896044-33896063 | MS.gene056396:CDS | 30.0% | |
| ! | CTCATTTTGTGTAAAATCTC+AGG | + | chr4.1:33897985-33898004 | MS.gene056396:intron | 30.0% |
| ! | TAGTGTTTTACAATTCTTGC+AGG | + | chr4.1:33894777-33894796 | MS.gene056396:intron | 30.0% |
| ! | TCTTTATTGGTGCTTTAACA+TGG | + | chr4.1:33895601-33895620 | MS.gene056396:intron | 30.0% |
| ! | TTAAGCAGTTTTTCCAAACA+TGG | - | chr4.1:33894477-33894496 | None:intergenic | 30.0% |
| ! | TTTTCCAGCAGTATACTTAA+AGG | - | chr4.1:33894319-33894338 | None:intergenic | 30.0% |
| !! | AATATGACCAATGGTGTTAT+AGG | + | chr4.1:33894741-33894760 | MS.gene056396:intron | 30.0% |
| !! | ATATGACCAATGGTGTTATA+GGG | + | chr4.1:33894742-33894761 | MS.gene056396:intron | 30.0% |
| !!! | AAACAAACCTTTTTGGCTTT+CGG | - | chr4.1:33896958-33896977 | None:intergenic | 30.0% |
| AACCTTAATGACCACCTTTA+AGG | + | chr4.1:33896648-33896667 | MS.gene056396:intron | 35.0% | |
| AAGAAGCGGAAAAAGAAAGA+AGG | + | chr4.1:33898026-33898045 | MS.gene056396:CDS | 35.0% | |
| AGAAGCGGAAAAAGAAAGAA+GGG | + | chr4.1:33898027-33898046 | MS.gene056396:CDS | 35.0% | |
| AGAGATGATGAAGTTGAAGA+TGG | - | chr4.1:33894136-33894155 | None:intergenic | 35.0% | |
| AGATTGTTTGGAAGAGCTTA+TGG | - | chr4.1:33894677-33894696 | None:intergenic | 35.0% | |
| ATCAAACCCTATAACACCAT+TGG | - | chr4.1:33894751-33894770 | None:intergenic | 35.0% | |
| ATGGTTAATAATAGGGAGGT+AGG | + | chr4.1:33897896-33897915 | MS.gene056396:intron | 35.0% | |
| ATTATCGACAAGGACACTAT+AGG | - | chr4.1:33896127-33896146 | None:intergenic | 35.0% | |
| CAAGGAACTTATCTTCTAAC+AGG | + | chr4.1:33895379-33895398 | MS.gene056396:intron | 35.0% | |
| CATGAAAGTTATCCATACCA+CGG | - | chr4.1:33896599-33896618 | None:intergenic | 35.0% | |
| CCATGTTATATTGTCATACC+AGG | + | chr4.1:33896014-33896033 | MS.gene056396:CDS | 35.0% | |
| CCTGGTATGACAATATAACA+TGG | - | chr4.1:33896017-33896036 | None:intergenic | 35.0% | |
| CTAAATTAGTGTTAGTTGGC+TGG | + | chr4.1:33896237-33896256 | MS.gene056396:intron | 35.0% | |
| CTTACAAGTGCTTATGCTAA+TGG | + | chr4.1:33894695-33894714 | MS.gene056396:intron | 35.0% | |
| CTTCTTCTGATTGACATAAC+CGG | - | chr4.1:33894949-33894968 | None:intergenic | 35.0% | |
| GAATTGACATTCATATCCCT+TGG | + | chr4.1:33897210-33897229 | MS.gene056396:intron | 35.0% | |
| GATAATCGAGAAAGAGATTC+TGG | + | chr4.1:33896141-33896160 | MS.gene056396:CDS | 35.0% | |
| GATCTTGAAAAGTCAAAGGT+AGG | - | chr4.1:33894165-33894184 | None:intergenic | 35.0% | |
| GCAAGTTGTGGAAGAATATA+TGG | + | chr4.1:33897877-33897896 | MS.gene056396:intron | 35.0% | |
| GCTTAATGCAGTTTGATGTT+TGG | + | chr4.1:33895958-33895977 | MS.gene056396:intron | 35.0% | |
| GGTGGGGAAAAAAATAATAG+AGG | - | chr4.1:33895147-33895166 | None:intergenic | 35.0% | |
| GGTTACATCAAACTTCTTTC+CGG | + | chr4.1:33894927-33894946 | MS.gene056396:CDS | 35.0% | |
| GTAAGAATATTACCGTGGTA+TGG | + | chr4.1:33896584-33896603 | MS.gene056396:intron | 35.0% | |
| TAATGAAAGTGACTCTAACC+AGG | - | chr4.1:33896695-33896714 | None:intergenic | 35.0% | |
| TACCACGGTAATATTCTTAC+AGG | - | chr4.1:33896584-33896603 | None:intergenic | 35.0% | |
| TATCCCTTGGTTTCTAATTG+TGG | + | chr4.1:33897223-33897242 | MS.gene056396:intron | 35.0% | |
| TCACATGACAAGATCATTGA+GGG | - | chr4.1:33895174-33895193 | None:intergenic | 35.0% | |
| TTCCTTAAAGGTGGTCATTA+AGG | - | chr4.1:33896653-33896672 | None:intergenic | 35.0% | |
| TTCTTCGAAGAAACATTCCA+AGG | + | chr4.1:33894101-33894120 | MS.gene056396:CDS | 35.0% | |
| TTGCCACAATTAGAAACCAA+GGG | - | chr4.1:33897229-33897248 | None:intergenic | 35.0% | |
| TTTGAACAGGATATTGAGTG+TGG | + | chr4.1:33894900-33894919 | MS.gene056396:CDS | 35.0% | |
| TTTGCCACAATTAGAAACCA+AGG | - | chr4.1:33897230-33897249 | None:intergenic | 35.0% | |
| TTTGGAAGAGCTTATGGAAA+CGG | - | chr4.1:33894671-33894690 | None:intergenic | 35.0% | |
| TTTGTTTCCTGCAGAATTTG+AGG | + | chr4.1:33897599-33897618 | MS.gene056396:intron | 35.0% | |
| ! | AACAAAAGGCTATTCTGAAG+AGG | + | chr4.1:33895224-33895243 | MS.gene056396:intron | 35.0% |
| ! | AATAGAATACTGAAGCACCA+GGG | - | chr4.1:33894877-33894896 | None:intergenic | 35.0% |
| ! | AGAATAGTGCTGAAGCATTA+AGG | - | chr4.1:33898081-33898100 | None:intergenic | 35.0% |
| ! | TAATAGAATACTGAAGCACC+AGG | - | chr4.1:33894878-33894897 | None:intergenic | 35.0% |
| ! | TTGACATCCTTGATTTTCCT+TGG | - | chr4.1:33896198-33896217 | None:intergenic | 35.0% |
| ! | TTTGAATTTCAGGTAAAGGC+TGG | + | chr4.1:33897806-33897825 | MS.gene056396:intron | 35.0% |
| !! | ATGATGAAGATGATGGACTA+TGG | + | chr4.1:33897108-33897127 | MS.gene056396:CDS | 35.0% |
| !! | GGGTTTTATCTGATTGGAAA+AGG | + | chr4.1:33894274-33894293 | MS.gene056396:CDS | 35.0% |
| !! | GTATGCTGGATTAGGAATTT+TGG | - | chr4.1:33897141-33897160 | None:intergenic | 35.0% |
| !! | TCAACTTTGAAGCATTGACA+CGG | + | chr4.1:33895703-33895722 | MS.gene056396:intron | 35.0% |
| !! | TTTTAGCTACATGCCATGTT+TGG | + | chr4.1:33894461-33894480 | MS.gene056396:intron | 35.0% |
| AAAAGGAGTGAAGGAAAAGC+AGG | + | chr4.1:33894291-33894310 | MS.gene056396:CDS | 40.0% | |
| AATCAAGAACCCCAACTACA+AGG | + | chr4.1:33897266-33897285 | MS.gene056396:CDS | 40.0% | |
| AATTATGTAGGAGGCTCGAA+GGG | + | chr4.1:33898152-33898171 | MS.gene056396:intron | 40.0% | |
| ACAGTATGCAAAGCAAGTTG+TGG | + | chr4.1:33897865-33897884 | MS.gene056396:intron | 40.0% | |
| ATAGAACAACTAGGACAGTG+AGG | - | chr4.1:33895900-33895919 | None:intergenic | 40.0% | |
| ATCAAGAACCCCAACTACAA+GGG | + | chr4.1:33897267-33897286 | MS.gene056396:CDS | 40.0% | |
| ATGCAGTTTGATGTTTGGAC+CGG | + | chr4.1:33895963-33895982 | MS.gene056396:intron | 40.0% | |
| ATTCCTAATCCAGCATACAG+AGG | + | chr4.1:33897143-33897162 | MS.gene056396:CDS | 40.0% | |
| ATTCTTACAGGTGGCCATTA+AGG | - | chr4.1:33896572-33896591 | None:intergenic | 40.0% | |
| ATTGAGTAGGGTGAACTGAT+TGG | + | chr4.1:33895931-33895950 | MS.gene056396:intron | 40.0% | |
| ATTTCAGCAGTAGCAAAGTG+TGG | - | chr4.1:33895670-33895689 | None:intergenic | 40.0% | |
| CAAGGATGTCAAAGCGAAAA+AGG | + | chr4.1:33896206-33896225 | MS.gene056396:CDS | 40.0% | |
| CACATGACAAGATCATTGAG+GGG | - | chr4.1:33895173-33895192 | None:intergenic | 40.0% | |
| CACCTGTAAGAATATTACCG+TGG | + | chr4.1:33896579-33896598 | MS.gene056396:intron | 40.0% | |
| CACGGTAATATTCTTACAGG+TGG | - | chr4.1:33896581-33896600 | None:intergenic | 40.0% | |
| CACTCCAGATCCTTTCTAAT+AGG | - | chr4.1:33896051-33896070 | None:intergenic | 40.0% | |
| CTCACATGACAAGATCATTG+AGG | - | chr4.1:33895175-33895194 | None:intergenic | 40.0% | |
| CTCTGGTATCTTTGCAGATA+TGG | - | chr4.1:33894835-33894854 | None:intergenic | 40.0% | |
| CTCTTTCTCGATTATCGACA+AGG | - | chr4.1:33896137-33896156 | None:intergenic | 40.0% | |
| CTGTTCTTATTGGTCAACTC+TGG | - | chr4.1:33894852-33894871 | None:intergenic | 40.0% | |
| CTTATCTTCTAACAGGGTCA+AGG | + | chr4.1:33895386-33895405 | MS.gene056396:intron | 40.0% | |
| GAAGATGGTTTCAGTTACCT+TGG | - | chr4.1:33894121-33894140 | None:intergenic | 40.0% | |
| GCAGTAGATATGGAGATAAG+AGG | + | chr4.1:33898211-33898230 | MS.gene056396:CDS | 40.0% | |
| GGGATATGATTCAATTCCAG+CGG | + | chr4.1:33896921-33896940 | MS.gene056396:intron | 40.0% | |
| GGTACCTTTAAGTATACTGC+TGG | + | chr4.1:33894312-33894331 | MS.gene056396:CDS | 40.0% | |
| GGTTTCAGCACATAAAGATC+AGG | - | chr4.1:33897630-33897649 | None:intergenic | 40.0% | |
| GTCAATCAGAAGAAGTTTGG+CGG | + | chr4.1:33894954-33894973 | MS.gene056396:CDS | 40.0% | |
| GTTTGTGTACCACATAGATC+CGG | - | chr4.1:33895985-33896004 | None:intergenic | 40.0% | |
| TAAATACGCGTATTTGGCAC+AGG | + | chr4.1:33897021-33897040 | MS.gene056396:intron | 40.0% | |
| TAATAGGATAATTCTGCCCC+TGG | - | chr4.1:33896035-33896054 | None:intergenic | 40.0% | |
| TAATTATGTAGGAGGCTCGA+AGG | + | chr4.1:33898151-33898170 | MS.gene056396:intron | 40.0% | |
| TCGTCATCAATGATGAGCAA+TGG | - | chr4.1:33895084-33895103 | None:intergenic | 40.0% | |
| TCTGATTGGAAAAGGAGTGA+AGG | + | chr4.1:33894282-33894301 | MS.gene056396:CDS | 40.0% | |
| TGAAGAACCTTTCGTTTCCA+TGG | - | chr4.1:33897170-33897189 | None:intergenic | 40.0% | |
| TGCAGATATGGCAAAATGCT+TGG | - | chr4.1:33894823-33894842 | None:intergenic | 40.0% | |
| TGGTAGCATGTACACAGATT+GGG | + | chr4.1:33896161-33896180 | MS.gene056396:CDS | 40.0% | |
| TTCCACTTTCCCTTGTAGTT+GGG | - | chr4.1:33897279-33897298 | None:intergenic | 40.0% | |
| TTCGAAGAAGACTTCAGCAA+AGG | - | chr4.1:33894090-33894109 | None:intergenic | 40.0% | |
| ! | AAGCTATTCTGGGGAACTTA+TGG | + | chr4.1:33894576-33894595 | MS.gene056396:intron | 40.0% |
| ! | ACAACTTGCTTTGCATACTG+TGG | - | chr4.1:33897866-33897885 | None:intergenic | 40.0% |
| ! | ACATCCTTGATTTTCCTTGG+AGG | - | chr4.1:33896195-33896214 | None:intergenic | 40.0% |
| ! | AGTATGTTGGCATTGAAGTG+TGG | + | chr4.1:33897655-33897674 | MS.gene056396:CDS | 40.0% |
| ! | ATTGGTGCTTTAACATGGTC+AGG | + | chr4.1:33895606-33895625 | MS.gene056396:intron | 40.0% |
| ! | CAACTTGCTTTGCATACTGT+GGG | - | chr4.1:33897865-33897884 | None:intergenic | 40.0% |
| ! | GTTTTGTCGGGGATCATAAA+TGG | + | chr4.1:33896729-33896748 | MS.gene056396:intron | 40.0% |
| ! | TATTGCAGTCTGGAACTCAA+AGG | + | chr4.1:33896326-33896345 | MS.gene056396:intron | 40.0% |
| !! | GAAGAAGAGGTAATGGATCA+AGG | + | chr4.1:33898055-33898074 | MS.gene056396:intron | 40.0% |
| !! | GCTGGATTAGGAATTTTGGA+AGG | - | chr4.1:33897137-33897156 | None:intergenic | 40.0% |
| !! | GTCGTTGGGTTTTATCTGAT+TGG | + | chr4.1:33894268-33894287 | MS.gene056396:CDS | 40.0% |
| !! | TAATCAATGTATCGGTGTCG+TGG | + | chr4.1:33895795-33895814 | MS.gene056396:intron | 40.0% |
| AAGATCATTGAGGGGAATGG+TGG | - | chr4.1:33895165-33895184 | None:intergenic | 45.0% | |
| AAGGTGACAACAAGTACCTC+TGG | - | chr4.1:33896516-33896535 | None:intergenic | 45.0% | |
| AGATCATTGAGGGGAATGGT+GGG | - | chr4.1:33895164-33895183 | None:intergenic | 45.0% | |
| ATCGACAAGGACACTATAGG+AGG | - | chr4.1:33896124-33896143 | None:intergenic | 45.0% | |
| ATGTTTGGACCGGATCTATG+TGG | + | chr4.1:33895973-33895992 | MS.gene056396:CDS | 45.0% | |
| CACCAGGGTTCTGTTCTTAT+TGG | - | chr4.1:33894862-33894881 | None:intergenic | 45.0% | |
| CACGTAAGAGTTGAAGATGG+AGG | - | chr4.1:33895325-33895344 | None:intergenic | 45.0% | |
| CCTTCCTCCAAGGAAAATCA+AGG | + | chr4.1:33896188-33896207 | MS.gene056396:CDS | 45.0% | |
| CGGAAAAAGAAAGAAGGGCT+CGG | + | chr4.1:33898032-33898051 | MS.gene056396:CDS | 45.0% | |
| CTGGTAGCATGTACACAGAT+TGG | + | chr4.1:33896160-33896179 | MS.gene056396:CDS | 45.0% | |
| CTTCCACTTTCCCTTGTAGT+TGG | - | chr4.1:33897280-33897299 | None:intergenic | 45.0% | |
| GAACAGGATATTGAGTGTGG+TGG | + | chr4.1:33894903-33894922 | MS.gene056396:CDS | 45.0% | |
| GACAAGATCATTGAGGGGAA+TGG | - | chr4.1:33895168-33895187 | None:intergenic | 45.0% | |
| GACCAATAAGAACAGAACCC+TGG | + | chr4.1:33894857-33894876 | MS.gene056396:CDS | 45.0% | |
| GACTGGGATGATGAAGATGA+TGG | + | chr4.1:33897101-33897120 | MS.gene056396:CDS | 45.0% | |
| GGAAAAAGAAAGAAGGGCTC+GGG | + | chr4.1:33898033-33898052 | MS.gene056396:CDS | 45.0% | |
| GGACACGTAAGAGTTGAAGA+TGG | - | chr4.1:33895328-33895347 | None:intergenic | 45.0% | |
| GGATCATCCTCAAATTCTGC+AGG | - | chr4.1:33897609-33897628 | None:intergenic | 45.0% | |
| GTACCTGGGTTATCAATCCA+TGG | - | chr4.1:33897306-33897325 | None:intergenic | 45.0% | |
| GTAGTTCAAGTGGTTGAGCT+GGG | - | chr4.1:33895349-33895368 | None:intergenic | 45.0% | |
| GTGCATTTGAGTAAGAGGGT+AGG | - | chr4.1:33894370-33894389 | None:intergenic | 45.0% | |
| TCAGCTTCTTTGAGCTGTGA+TGG | + | chr4.1:33897511-33897530 | MS.gene056396:intron | 45.0% | |
| TCCACTTTCCCTTGTAGTTG+GGG | - | chr4.1:33897278-33897297 | None:intergenic | 45.0% | |
| TCCTGATCCGAAAGCCAAAA+AGG | + | chr4.1:33896948-33896967 | MS.gene056396:CDS | 45.0% | |
| TCTATTGCAGCCAGCAGATT+GGG | + | chr4.1:33896452-33896471 | MS.gene056396:intron | 45.0% | |
| TCTCTATCATCCCAATCTGC+TGG | - | chr4.1:33896465-33896484 | None:intergenic | 45.0% | |
| TTGGCGGTGATACTCCTTAT+AGG | + | chr4.1:33894970-33894989 | MS.gene056396:CDS | 45.0% | |
| ! | ACCTCTGGTTTGACATCATC+AGG | - | chr4.1:33896501-33896520 | None:intergenic | 45.0% |
| ! | ACTCCATGGATTGATAACCC+AGG | + | chr4.1:33897300-33897319 | MS.gene056396:CDS | 45.0% |
| ! | CCTCTGGTTTGACATCATCA+GGG | - | chr4.1:33896500-33896519 | None:intergenic | 45.0% |
| ! | CCTTGATTTTCCTTGGAGGA+AGG | - | chr4.1:33896191-33896210 | None:intergenic | 45.0% |
| !!! | ACCTTTTTGGCTTTCGGATC+AGG | - | chr4.1:33896952-33896971 | None:intergenic | 45.0% |
| !! | AATAAAAAAAAAAAAAAAGA+TGG | + | chr4.1:33894237-33894256 | MS.gene056396:intron | 5.0% |
| !!! | ATCTTTTTTTTTTTTTTTAT+TGG | - | chr4.1:33894238-33894257 | None:intergenic | 5.0% |
| AAGATGGCTGGAAGAGTCGT+TGG | + | chr4.1:33894253-33894272 | MS.gene056396:intron | 50.0% | |
| ACCCCAACTACAAGGGAAAG+TGG | + | chr4.1:33897274-33897293 | MS.gene056396:CDS | 50.0% | |
| AGAGAGAGGGGCAGTAGATA+TGG | + | chr4.1:33898201-33898220 | MS.gene056396:CDS | 50.0% | |
| AGATGGCTGGAAGAGTCGTT+GGG | + | chr4.1:33894254-33894273 | MS.gene056396:intron | 50.0% | |
| AGGGAAAGTGGAAGACTCCA+TGG | + | chr4.1:33897286-33897305 | MS.gene056396:CDS | 50.0% | |
| ATCCAGCATACAGAGGACCA+TGG | + | chr4.1:33897150-33897169 | MS.gene056396:CDS | 50.0% | |
| ATTGGGACATCCTTCCTCCA+AGG | + | chr4.1:33896178-33896197 | MS.gene056396:CDS | 50.0% | |
| CAAGAGAAGAGGGCGAAAAG+AGG | + | chr4.1:33898175-33898194 | MS.gene056396:CDS | 50.0% | |
| CAGAGGACCATGGAAACGAA+AGG | + | chr4.1:33897160-33897179 | MS.gene056396:CDS | 50.0% | |
| CAGGATATTGAGTGTGGTGG+TGG | + | chr4.1:33894906-33894925 | MS.gene056396:CDS | 50.0% | |
| CCTGCTGATCCTGATGACAA+AGG | + | chr4.1:33894342-33894361 | MS.gene056396:CDS | 50.0% | |
| CCTTTGTCATCAGGATCAGC+AGG | - | chr4.1:33894345-33894364 | None:intergenic | 50.0% | |
| CGAAAAGAGGAGGAGAGAGA+GGG | + | chr4.1:33898188-33898207 | MS.gene056396:CDS | 50.0% | |
| CGTAGTTCAAGTGGTTGAGC+TGG | - | chr4.1:33895350-33895369 | None:intergenic | 50.0% | |
| CTCTATTGCAGCCAGCAGAT+TGG | + | chr4.1:33896451-33896470 | MS.gene056396:intron | 50.0% | |
| GAAAAGAGGAGGAGAGAGAG+GGG | + | chr4.1:33898189-33898208 | MS.gene056396:CDS | 50.0% | |
| GATCATTGAGGGGAATGGTG+GGG | - | chr4.1:33895163-33895182 | None:intergenic | 50.0% | |
| GGGTAGGTACCTTTGTCATC+AGG | - | chr4.1:33894354-33894373 | None:intergenic | 50.0% | |
| GGTCCTCTGTATGCTGGATT+AGG | - | chr4.1:33897149-33897168 | None:intergenic | 50.0% | |
| TCTTCATCATCCCAGTCAGC+AGG | - | chr4.1:33897098-33897117 | None:intergenic | 50.0% | |
| TTCCATGGTCCTCTGTATGC+TGG | - | chr4.1:33897155-33897174 | None:intergenic | 50.0% | |
| TTCGGATCAGGAATTTCCGC+TGG | - | chr4.1:33896940-33896959 | None:intergenic | 50.0% | |
| ! | CAACCGCTCCTTTTCCCATT+AGG | + | chr4.1:33895415-33895434 | MS.gene056396:intron | 50.0% |
| ! | CCCTGATGATGTCAAACCAG+AGG | + | chr4.1:33896497-33896516 | MS.gene056396:CDS | 50.0% |
| ! | TGTTGGCATTGAAGTGTGGC+AGG | + | chr4.1:33897659-33897678 | MS.gene056396:CDS | 50.0% |
| !! | AATGTATCGGTGTCGTGGCT+AGG | + | chr4.1:33895800-33895819 | MS.gene056396:intron | 50.0% |
| !! | AGGACACTATAGGAGGCATC+AGG | - | chr4.1:33896117-33896136 | None:intergenic | 50.0% |
| !! | GTTTGACTAGCCTGCTGACT+GGG | + | chr4.1:33897085-33897104 | MS.gene056396:intron | 50.0% |
| !! | TAGTGTCGGCGTTGCAATGT+TGG | - | chr4.1:33895744-33895763 | None:intergenic | 50.0% |
| !! | TGAAGCATTGACACGGACAC+CGG | + | chr4.1:33895710-33895729 | MS.gene056396:intron | 50.0% |
| !! | TGCAATGTTGGTGTCGTGTC+CGG | - | chr4.1:33895732-33895751 | None:intergenic | 50.0% |
| !! | TGTTTGACTAGCCTGCTGAC+TGG | + | chr4.1:33897084-33897103 | MS.gene056396:intron | 50.0% |
| AAGAAGGGCTCGGGAAGAAG+AGG | + | chr4.1:33898042-33898061 | MS.gene056396:CDS | 55.0% | |
| ATATAGCCGACCCCGCCTAA+TGG | - | chr4.1:33895433-33895452 | None:intergenic | 55.0% | |
| CCACTTGAACTACGCGCTGA+AGG | + | chr4.1:33895356-33895375 | MS.gene056396:intron | 55.0% | |
| CCGCCTAATGGGAAAAGGAG+CGG | - | chr4.1:33895421-33895440 | None:intergenic | 55.0% | |
| CCTTCAGCGCGTAGTTCAAG+TGG | - | chr4.1:33895359-33895378 | None:intergenic | 55.0% | |
| GAGAAGAGGGCGAAAAGAGG+AGG | + | chr4.1:33898178-33898197 | MS.gene056396:CDS | 55.0% | |
| GCGAAAAGAGGAGGAGAGAG+AGG | + | chr4.1:33898187-33898206 | MS.gene056396:CDS | 55.0% | |
| GCTCGAAGGGCAAGAGAAGA+GGG | + | chr4.1:33898165-33898184 | MS.gene056396:CDS | 55.0% | |
| GGCTCGGGAAGAAGAGGTAA+TGG | + | chr4.1:33898048-33898067 | MS.gene056396:intron | 55.0% | |
| TATAGCCGACCCCGCCTAAT+GGG | - | chr4.1:33895432-33895451 | None:intergenic | 55.0% | |
| TGAACTACGCGCTGAAGGCA+AGG | + | chr4.1:33895361-33895380 | MS.gene056396:intron | 55.0% | |
| ! | CCGCTCCTTTTCCCATTAGG+CGG | + | chr4.1:33895418-33895437 | MS.gene056396:intron | 55.0% |
| ! | CGCTCCTTTTCCCATTAGGC+GGG | + | chr4.1:33895419-33895438 | MS.gene056396:intron | 55.0% |
| ! | CTTTTCCCATTAGGCGGGGT+CGG | + | chr4.1:33895424-33895443 | MS.gene056396:intron | 55.0% |
| ! | GCTCCTTTTCCCATTAGGCG+GGG | + | chr4.1:33895420-33895439 | MS.gene056396:intron | 55.0% |
| !! | AGATAAGAGGCGCCGTAGGA+GGG | + | chr4.1:33898224-33898243 | MS.gene056396:CDS | 55.0% |
| !! | ATGGAGATAAGAGGCGCCGT+AGG | + | chr4.1:33898220-33898239 | MS.gene056396:CDS | 55.0% |
| CGACCCCGCCTAATGGGAAA+AGG | - | chr4.1:33895426-33895445 | None:intergenic | 60.0% | |
| GGCTCGAAGGGCAAGAGAAG+AGG | + | chr4.1:33898164-33898183 | MS.gene056396:CDS | 60.0% | |
| !! | GAGATAAGAGGCGCCGTAGG+AGG | + | chr4.1:33898223-33898242 | MS.gene056396:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 33894020 | 33898249 | 33894020 | ID=MS.gene056396 |
| chr4.1 | mRNA | 33894020 | 33898249 | 33894020 | ID=MS.gene056396.t1;Parent=MS.gene056396 |
| chr4.1 | exon | 33894020 | 33894122 | 33894020 | ID=MS.gene056396.t1.exon1;Parent=MS.gene056396.t1 |
| chr4.1 | CDS | 33894020 | 33894122 | 33894020 | ID=cds.MS.gene056396.t1;Parent=MS.gene056396.t1 |
| chr4.1 | exon | 33894256 | 33894363 | 33894256 | ID=MS.gene056396.t1.exon2;Parent=MS.gene056396.t1 |
| chr4.1 | CDS | 33894256 | 33894363 | 33894256 | ID=cds.MS.gene056396.t1;Parent=MS.gene056396.t1 |
| chr4.1 | exon | 33894799 | 33894991 | 33894799 | ID=MS.gene056396.t1.exon3;Parent=MS.gene056396.t1 |
| chr4.1 | CDS | 33894799 | 33894991 | 33894799 | ID=cds.MS.gene056396.t1;Parent=MS.gene056396.t1 |
| chr4.1 | exon | 33895969 | 33896227 | 33895969 | ID=MS.gene056396.t1.exon4;Parent=MS.gene056396.t1 |
| chr4.1 | CDS | 33895969 | 33896227 | 33895969 | ID=cds.MS.gene056396.t1;Parent=MS.gene056396.t1 |
| chr4.1 | exon | 33896462 | 33896518 | 33896462 | ID=MS.gene056396.t1.exon5;Parent=MS.gene056396.t1 |
| chr4.1 | CDS | 33896462 | 33896518 | 33896462 | ID=cds.MS.gene056396.t1;Parent=MS.gene056396.t1 |
| chr4.1 | exon | 33896922 | 33896969 | 33896922 | ID=MS.gene056396.t1.exon6;Parent=MS.gene056396.t1 |
| chr4.1 | CDS | 33896922 | 33896969 | 33896922 | ID=cds.MS.gene056396.t1;Parent=MS.gene056396.t1 |
| chr4.1 | exon | 33897095 | 33897181 | 33897095 | ID=MS.gene056396.t1.exon7;Parent=MS.gene056396.t1 |
| chr4.1 | CDS | 33897095 | 33897181 | 33897095 | ID=cds.MS.gene056396.t1;Parent=MS.gene056396.t1 |
| chr4.1 | exon | 33897264 | 33897321 | 33897264 | ID=MS.gene056396.t1.exon8;Parent=MS.gene056396.t1 |
| chr4.1 | CDS | 33897264 | 33897321 | 33897264 | ID=cds.MS.gene056396.t1;Parent=MS.gene056396.t1 |
| chr4.1 | exon | 33897613 | 33897680 | 33897613 | ID=MS.gene056396.t1.exon9;Parent=MS.gene056396.t1 |
| chr4.1 | CDS | 33897613 | 33897680 | 33897613 | ID=cds.MS.gene056396.t1;Parent=MS.gene056396.t1 |
| chr4.1 | exon | 33897818 | 33897867 | 33897818 | ID=MS.gene056396.t1.exon10;Parent=MS.gene056396.t1 |
| chr4.1 | CDS | 33897818 | 33897867 | 33897818 | ID=cds.MS.gene056396.t1;Parent=MS.gene056396.t1 |
| chr4.1 | exon | 33898007 | 33898063 | 33898007 | ID=MS.gene056396.t1.exon11;Parent=MS.gene056396.t1 |
| chr4.1 | CDS | 33898007 | 33898063 | 33898007 | ID=cds.MS.gene056396.t1;Parent=MS.gene056396.t1 |
| chr4.1 | exon | 33898162 | 33898249 | 33898162 | ID=MS.gene056396.t1.exon12;Parent=MS.gene056396.t1 |
| chr4.1 | CDS | 33898162 | 33898249 | 33898162 | ID=cds.MS.gene056396.t1;Parent=MS.gene056396.t1 |
| Gene Sequence |
| Protein sequence |
