Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073808.t1 | XP_024634632.1 | 98.3 | 181 | 3 | 0 | 1 | 181 | 96 | 276 | 7.30E-102 | 379.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073808.t1 | Q8GXF8 | 52.8 | 193 | 75 | 3 | 1 | 181 | 93 | 281 | 5.0e-51 | 202.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073808.t1 | A0A396JUE4 | 98.3 | 181 | 3 | 0 | 1 | 181 | 96 | 276 | 5.3e-102 | 379.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051582 | MS.gene073808 | 0.818972 | 1.48E-52 | -1.69E-46 |
MS.gene052253 | MS.gene073808 | 0.826388 | 2.79E-54 | -1.69E-46 |
MS.gene052485 | MS.gene073808 | 0.804052 | 2.60E-49 | -1.69E-46 |
MS.gene054183 | MS.gene073808 | 0.8044 | 2.20E-49 | -1.69E-46 |
MS.gene054918 | MS.gene073808 | 0.811683 | 6.19E-51 | -1.69E-46 |
MS.gene055116 | MS.gene073808 | 0.82267 | 2.09E-53 | -1.69E-46 |
MS.gene056723 | MS.gene073808 | 0.804448 | 2.15E-49 | -1.69E-46 |
MS.gene059011 | MS.gene073808 | 0.806984 | 6.31E-50 | -1.69E-46 |
MS.gene059420 | MS.gene073808 | 0.823153 | 1.61E-53 | -1.69E-46 |
MS.gene059688 | MS.gene073808 | 0.815316 | 9.84E-52 | -1.69E-46 |
MS.gene060403 | MS.gene073808 | 0.800737 | 1.25E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073808.t1 | MTR_1g067260 | 98.425 | 127 | 2 | 0 | 1 | 127 | 96 | 222 | 3.02e-85 | 253 |
MS.gene073808.t1 | MTR_7g074170 | 39.823 | 113 | 58 | 3 | 55 | 162 | 286 | 393 | 4.36e-18 | 81.3 |
MS.gene073808.t1 | MTR_2g097620 | 47.222 | 72 | 34 | 1 | 94 | 161 | 165 | 236 | 2.46e-17 | 78.6 |
MS.gene073808.t1 | MTR_1g114620 | 49.296 | 71 | 34 | 1 | 94 | 162 | 242 | 312 | 3.41e-17 | 78.2 |
MS.gene073808.t1 | MTR_6g079660 | 41.892 | 74 | 38 | 1 | 94 | 162 | 210 | 283 | 1.15e-15 | 73.9 |
MS.gene073808.t1 | MTR_4g110100 | 48.000 | 75 | 34 | 1 | 94 | 163 | 335 | 409 | 1.58e-15 | 73.9 |
MS.gene073808.t1 | MTR_5g041310 | 36.735 | 98 | 59 | 2 | 65 | 161 | 67 | 162 | 1.84e-15 | 72.0 |
MS.gene073808.t1 | MTR_4g064570 | 48.611 | 72 | 33 | 1 | 94 | 161 | 157 | 228 | 3.99e-15 | 72.4 |
MS.gene073808.t1 | MTR_5g041330 | 42.857 | 70 | 39 | 1 | 94 | 162 | 84 | 153 | 4.12e-15 | 70.9 |
MS.gene073808.t1 | MTR_6g016350 | 57.143 | 49 | 21 | 0 | 114 | 162 | 311 | 359 | 8.95e-15 | 71.6 |
MS.gene073808.t1 | MTR_1g114320 | 35.484 | 93 | 55 | 1 | 76 | 163 | 151 | 243 | 3.34e-14 | 69.7 |
MS.gene073808.t1 | MTR_3g068005 | 44.737 | 76 | 38 | 1 | 94 | 165 | 172 | 247 | 4.31e-14 | 69.7 |
MS.gene073808.t1 | MTR_1g051105 | 31.959 | 97 | 60 | 2 | 94 | 186 | 135 | 229 | 3.54e-13 | 66.2 |
MS.gene073808.t1 | MTR_5g080350 | 37.500 | 80 | 46 | 1 | 84 | 159 | 159 | 238 | 3.91e-13 | 67.0 |
MS.gene073808.t1 | MTR_1g014710 | 40.789 | 76 | 38 | 2 | 94 | 162 | 206 | 281 | 1.41e-12 | 65.1 |
MS.gene073808.t1 | MTR_5g088720 | 34.286 | 70 | 42 | 1 | 94 | 159 | 222 | 291 | 4.66e-12 | 63.9 |
MS.gene073808.t1 | MTR_5g088720 | 34.286 | 70 | 42 | 1 | 94 | 159 | 181 | 250 | 6.69e-12 | 63.2 |
MS.gene073808.t1 | MTR_2g007340 | 45.588 | 68 | 33 | 1 | 99 | 162 | 182 | 249 | 6.79e-12 | 63.2 |
MS.gene073808.t1 | MTR_5g088720 | 34.286 | 70 | 42 | 1 | 94 | 159 | 176 | 245 | 6.89e-12 | 63.2 |
MS.gene073808.t1 | MTR_3g083480 | 40.580 | 69 | 40 | 1 | 94 | 162 | 218 | 285 | 2.40e-11 | 61.6 |
MS.gene073808.t1 | MTR_3g088080 | 37.209 | 86 | 47 | 2 | 77 | 160 | 4 | 84 | 4.12e-11 | 57.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073808.t1 | AT5G02750 | 49.223 | 193 | 82 | 3 | 1 | 181 | 93 | 281 | 1.06e-57 | 182 |
MS.gene073808.t1 | AT5G60820 | 68.750 | 48 | 15 | 0 | 114 | 161 | 372 | 419 | 8.52e-19 | 83.2 |
MS.gene073808.t1 | AT3G02340 | 35.556 | 135 | 79 | 2 | 37 | 163 | 250 | 384 | 2.38e-18 | 82.0 |
MS.gene073808.t1 | AT3G02340 | 35.556 | 135 | 79 | 2 | 37 | 163 | 250 | 384 | 2.38e-18 | 82.0 |
MS.gene073808.t1 | AT5G08139 | 50.000 | 64 | 32 | 0 | 99 | 162 | 294 | 357 | 3.21e-17 | 78.6 |
MS.gene073808.t1 | AT3G19950 | 36.957 | 92 | 53 | 1 | 76 | 162 | 173 | 264 | 5.08e-17 | 77.8 |
MS.gene073808.t1 | AT3G19950 | 36.957 | 92 | 53 | 1 | 76 | 162 | 231 | 322 | 5.91e-17 | 77.8 |
MS.gene073808.t1 | AT3G19950 | 36.957 | 92 | 53 | 1 | 76 | 162 | 231 | 322 | 5.91e-17 | 77.8 |
MS.gene073808.t1 | AT5G15820 | 45.679 | 81 | 39 | 1 | 94 | 169 | 266 | 346 | 2.04e-16 | 76.3 |
MS.gene073808.t1 | AT3G46620 | 45.946 | 74 | 36 | 1 | 94 | 163 | 191 | 264 | 1.02e-15 | 74.3 |
MS.gene073808.t1 | AT1G26800 | 29.570 | 186 | 106 | 5 | 1 | 183 | 21 | 184 | 2.34e-15 | 71.2 |
MS.gene073808.t1 | AT5G59550 | 47.222 | 72 | 34 | 2 | 94 | 161 | 280 | 351 | 6.20e-15 | 72.4 |
MS.gene073808.t1 | AT5G59550 | 47.222 | 72 | 34 | 2 | 94 | 161 | 175 | 246 | 9.76e-15 | 71.6 |
MS.gene073808.t1 | AT5G64920 | 42.500 | 80 | 42 | 1 | 94 | 169 | 233 | 312 | 1.11e-14 | 71.2 |
MS.gene073808.t1 | AT3G10815 | 36.905 | 84 | 49 | 1 | 94 | 173 | 97 | 180 | 1.54e-14 | 68.9 |
MS.gene073808.t1 | AT5G01980 | 45.205 | 73 | 36 | 1 | 94 | 162 | 326 | 398 | 1.61e-14 | 71.2 |
MS.gene073808.t1 | AT1G60360 | 45.070 | 71 | 34 | 1 | 94 | 159 | 199 | 269 | 7.08e-14 | 68.9 |
MS.gene073808.t1 | AT5G20910 | 54.000 | 50 | 23 | 0 | 113 | 162 | 229 | 278 | 8.59e-14 | 68.6 |
MS.gene073808.t1 | AT2G39720 | 39.474 | 76 | 40 | 1 | 94 | 163 | 175 | 250 | 5.02e-13 | 66.6 |
MS.gene073808.t1 | AT2G39720 | 39.474 | 76 | 40 | 1 | 94 | 163 | 175 | 250 | 5.02e-13 | 66.6 |
MS.gene073808.t1 | AT4G26400 | 42.029 | 69 | 39 | 1 | 94 | 162 | 222 | 289 | 8.02e-13 | 65.9 |
MS.gene073808.t1 | AT4G26400 | 42.029 | 69 | 39 | 1 | 94 | 162 | 222 | 289 | 8.02e-13 | 65.9 |
MS.gene073808.t1 | AT3G60080 | 40.000 | 65 | 39 | 0 | 114 | 178 | 169 | 233 | 5.17e-12 | 63.5 |
MS.gene073808.t1 | AT3G13430 | 36.232 | 69 | 44 | 0 | 94 | 162 | 205 | 273 | 5.41e-12 | 63.5 |
MS.gene073808.t1 | AT3G13430 | 36.232 | 69 | 44 | 0 | 94 | 162 | 205 | 273 | 5.41e-12 | 63.5 |
MS.gene073808.t1 | AT3G13430 | 36.232 | 69 | 44 | 0 | 94 | 162 | 205 | 273 | 5.41e-12 | 63.5 |
MS.gene073808.t1 | AT3G13430 | 36.232 | 69 | 44 | 0 | 94 | 162 | 205 | 273 | 5.41e-12 | 63.5 |
MS.gene073808.t1 | AT2G40830 | 34.722 | 72 | 42 | 1 | 94 | 160 | 165 | 236 | 5.62e-12 | 63.5 |
MS.gene073808.t1 | AT2G40830 | 34.722 | 72 | 42 | 1 | 94 | 160 | 165 | 236 | 5.62e-12 | 63.5 |
MS.gene073808.t1 | AT2G40830 | 34.722 | 72 | 42 | 1 | 94 | 160 | 165 | 236 | 5.62e-12 | 63.5 |
MS.gene073808.t1 | AT2G40830 | 34.722 | 72 | 42 | 1 | 94 | 160 | 165 | 236 | 5.62e-12 | 63.5 |
MS.gene073808.t1 | AT2G44330 | 52.174 | 46 | 22 | 0 | 114 | 159 | 96 | 141 | 1.94e-11 | 60.5 |
MS.gene073808.t1 | AT5G56340 | 40.299 | 67 | 39 | 1 | 94 | 160 | 240 | 305 | 1.99e-11 | 62.0 |
MS.gene073808.t1 | AT3G56580 | 32.394 | 71 | 43 | 1 | 94 | 159 | 161 | 231 | 8.14e-11 | 60.1 |
MS.gene073808.t1 | AT3G56580 | 32.394 | 71 | 43 | 1 | 94 | 159 | 161 | 231 | 8.14e-11 | 60.1 |
MS.gene073808.t1 | AT3G56580 | 32.394 | 71 | 43 | 1 | 94 | 159 | 161 | 231 | 8.14e-11 | 60.1 |
MS.gene073808.t1 | AT1G18770 | 47.170 | 53 | 28 | 0 | 107 | 159 | 52 | 104 | 9.12e-11 | 57.0 |
Find 51 sgRNAs with CRISPR-Local
Find 65 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGGAGATTGGTGGGTGTTT+TGG | 0.137532 | 1.3:-47108812 | MS.gene073808:CDS |
AACGGTGCGGTTAATGCTTC+TGG | 0.240119 | 1.3:+47108967 | None:intergenic |
CCACCGCTTGGTGCATGTTT+TGG | 0.252463 | 1.3:-47108874 | MS.gene073808:CDS |
CCAACGGTTGTGGGAAGTTT+TGG | 0.260265 | 1.3:-47108533 | MS.gene073808:CDS |
CATGTCAGCATTTGTTTCAT+TGG | 0.329624 | 1.3:-47108642 | MS.gene073808:CDS |
AGTGAAGGAGGTGGCGGCTT+CGG | 0.342382 | 1.3:-47108770 | MS.gene073808:CDS |
GGAACACGTGTCCTTGTTGC+AGG | 0.342454 | 1.3:-47108591 | MS.gene073808:CDS |
CGTGTCCTTGTTGCAGGTTT+CGG | 0.355293 | 1.3:-47108585 | MS.gene073808:CDS |
GGCGACGGTGGTTTCTTTGC+CGG | 0.368886 | 1.3:-47108746 | MS.gene073808:CDS |
CGGCTCACCGTCTCGATAAA+CGG | 0.399480 | 1.3:+47108838 | None:intergenic |
TCTTCTCCAACACATTGTTA+AGG | 0.406100 | 1.3:-47108915 | MS.gene073808:CDS |
GTAAAGAAGAGATGCAAGTA+GGG | 0.417369 | 1.3:-47108684 | MS.gene073808:CDS |
GGTTTCTTTGCCGGCGGTGG+AGG | 0.424492 | 1.3:-47108737 | MS.gene073808:CDS |
GGTGGTTTCTTTGCCGGCGG+TGG | 0.426920 | 1.3:-47108740 | MS.gene073808:CDS |
TTGGAGAGATCCAACGGTTG+TGG | 0.429327 | 1.3:-47108543 | MS.gene073808:CDS |
GCGGTGGAGGTGAGTGTTGG+TGG | 0.436431 | 1.3:-47108724 | MS.gene073808:CDS |
AAATTAGTGCTAAACATAAC+AGG | 0.443732 | 1.3:-47108507 | MS.gene073808:CDS |
TATTCTTCTGCACCACCGCT+TGG | 0.446476 | 1.3:-47108886 | MS.gene073808:CDS |
GGTGGCGGCTTCGGCGGCGA+CGG | 0.468504 | 1.3:-47108761 | MS.gene073808:CDS |
AGAGGGGAAGGAAGTGAAGG+AGG | 0.486989 | 1.3:-47108782 | MS.gene073808:CDS |
TGTAAAGAAGAGATGCAAGT+AGG | 0.495873 | 1.3:-47108685 | MS.gene073808:CDS |
TGGAGAGATCCAACGGTTGT+GGG | 0.497245 | 1.3:-47108542 | MS.gene073808:CDS |
TTTAGCCTCCAGTGTGAAAA+CGG | 0.505498 | 1.3:+47108949 | None:intergenic |
TGAAGAGGGGAAGGAAGTGA+AGG | 0.505805 | 1.3:-47108785 | MS.gene073808:CDS |
CCGGCGGTGGAGGTGAGTGT+TGG | 0.507563 | 1.3:-47108727 | MS.gene073808:CDS |
GAGCCGGTGTTGGAGATTGG+TGG | 0.508330 | 1.3:-47108821 | MS.gene073808:CDS |
AGCCGGTGTTGGAGATTGGT+GGG | 0.508824 | 1.3:-47108820 | MS.gene073808:CDS |
CAATGAAACAAATGCTGACA+TGG | 0.516627 | 1.3:+47108643 | None:intergenic |
GGTGAGCCGGTGTTGGAGAT+TGG | 0.519084 | 1.3:-47108824 | MS.gene073808:CDS |
GGCGGCTTCGGCGGCGACGG+TGG | 0.523068 | 1.3:-47108758 | MS.gene073808:CDS |
GAAGGAAGTGAAGGAGGTGG+CGG | 0.525705 | 1.3:-47108776 | MS.gene073808:CDS |
GGGGAAGGAAGTGAAGGAGG+TGG | 0.525875 | 1.3:-47108779 | MS.gene073808:CDS |
GTCGGTGTCACGTTCTCTCA+TGG | 0.527329 | 1.3:+47109035 | None:intergenic |
CCAACACTCACCTCCACCGC+CGG | 0.535946 | 1.3:+47108727 | None:intergenic |
CGGTGGAGGTGAGTGTTGGT+GGG | 0.538337 | 1.3:-47108723 | MS.gene073808:CDS |
TCGAGACGGTGAGCCGGTGT+TGG | 0.538693 | 1.3:-47108831 | MS.gene073808:CDS |
CCAAAACTTCCCACAACCGT+TGG | 0.540607 | 1.3:+47108533 | None:intergenic |
TTTGGGTTGTGAAGAGGGGA+AGG | 0.541948 | 1.3:-47108794 | MS.gene073808:CDS |
AGAAAGCCTTAACAATGTGT+TGG | 0.545710 | 1.3:+47108909 | None:intergenic |
GAAGGAGGTGGCGGCTTCGG+CGG | 0.550251 | 1.3:-47108767 | MS.gene073808:CDS |
CACCCACCAATCTCCAACAC+CGG | 0.558850 | 1.3:+47108818 | None:intergenic |
TTTGATTCCGTTTATCGAGA+CGG | 0.586178 | 1.3:-47108845 | MS.gene073808:CDS |
CGTTTATCGAGACGGTGAGC+CGG | 0.603190 | 1.3:-47108837 | MS.gene073808:CDS |
GACGGTGGTTTCTTTGCCGG+CGG | 0.603871 | 1.3:-47108743 | MS.gene073808:CDS |
GAGAAGGAGTAGCACAGCGT+CGG | 0.614727 | 1.3:+47109017 | None:intergenic |
GTGTTCCTCTTTCCCAACCA+TGG | 0.628021 | 1.3:+47108607 | None:intergenic |
GTGTTTCACAGAACAAGAGA+AGG | 0.630662 | 1.3:+47109001 | None:intergenic |
CCAAAACATGCACCAAGCGG+TGG | 0.645373 | 1.3:+47108874 | None:intergenic |
GGTAACCGAAACCTGCAACA+AGG | 0.660646 | 1.3:+47108580 | None:intergenic |
GATCCAAAACATGCACCAAG+CGG | 0.721251 | 1.3:+47108871 | None:intergenic |
CCTCCAGTGTGAAAACGGTG+CGG | 0.730782 | 1.3:+47108954 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAATTAGTGCTAAACATAAC+AGG | - | chr1.3:47109021-47109040 | MS.gene073808:CDS | 25.0% |
! | ATGTGTATTTTACCATGGTT+GGG | - | chr1.3:47108909-47108928 | MS.gene073808:CDS | 30.0% |
! | ATTGGATGTGTATTTTACCA+TGG | - | chr1.3:47108904-47108923 | MS.gene073808:CDS | 30.0% |
AGAAAGCCTTAACAATGTGT+TGG | + | chr1.3:47108622-47108641 | None:intergenic | 35.0% | |
CAATGAAACAAATGCTGACA+TGG | + | chr1.3:47108888-47108907 | None:intergenic | 35.0% | |
CATGTCAGCATTTGTTTCAT+TGG | - | chr1.3:47108886-47108905 | MS.gene073808:CDS | 35.0% | |
GATCTCTCCAAAAACATCAT+CGG | + | chr1.3:47108976-47108995 | None:intergenic | 35.0% | |
GTAAAGAAGAGATGCAAGTA+GGG | - | chr1.3:47108844-47108863 | MS.gene073808:CDS | 35.0% | |
TCTTCTCCAACACATTGTTA+AGG | - | chr1.3:47108613-47108632 | MS.gene073808:CDS | 35.0% | |
TGTAAAGAAGAGATGCAAGT+AGG | - | chr1.3:47108843-47108862 | MS.gene073808:CDS | 35.0% | |
TTTGATTCCGTTTATCGAGA+CGG | - | chr1.3:47108683-47108702 | MS.gene073808:CDS | 35.0% | |
! | GATGTGTATTTTACCATGGT+TGG | - | chr1.3:47108908-47108927 | MS.gene073808:CDS | 35.0% |
!!! | ATGTTTTTGGAGAGATCCAA+CGG | - | chr1.3:47108979-47108998 | MS.gene073808:CDS | 35.0% |
GTGTTTCACAGAACAAGAGA+AGG | + | chr1.3:47108530-47108549 | None:intergenic | 40.0% | |
TCTCCAAAAACATCATCGGA+CGG | + | chr1.3:47108972-47108991 | None:intergenic | 40.0% | |
TTTAGCCTCCAGTGTGAAAA+CGG | + | chr1.3:47108582-47108601 | None:intergenic | 40.0% | |
! | TTACCGTCCGATGATGTTTT+TGG | - | chr1.3:47108966-47108985 | MS.gene073808:CDS | 40.0% |
! | TTTTACCATGGTTGGGAAAG+AGG | - | chr1.3:47108916-47108935 | MS.gene073808:CDS | 40.0% |
GATCCAAAACATGCACCAAG+CGG | + | chr1.3:47108660-47108679 | None:intergenic | 45.0% | |
!! | TGGAGATTGGTGGGTGTTTT+GGG | - | chr1.3:47108717-47108736 | MS.gene073808:CDS | 45.0% |
!! | TTGGAGATTGGTGGGTGTTT+TGG | - | chr1.3:47108716-47108735 | MS.gene073808:CDS | 45.0% |
!!! | GCTTGGTGCATGTTTTGGAT+CGG | - | chr1.3:47108659-47108678 | MS.gene073808:CDS | 45.0% |
!!! | GGTGTTTTGGGTTGTGAAGA+GGG | - | chr1.3:47108729-47108748 | MS.gene073808:CDS | 45.0% |
!!! | GTGTTTTGGGTTGTGAAGAG+GGG | - | chr1.3:47108730-47108749 | MS.gene073808:CDS | 45.0% |
AACGGTGCGGTTAATGCTTC+TGG | + | chr1.3:47108564-47108583 | None:intergenic | 50.0% | |
CCAAAACTTCCCACAACCGT+TGG | + | chr1.3:47108998-47109017 | None:intergenic | 50.0% | |
CGTGTCCTTGTTGCAGGTTT+CGG | - | chr1.3:47108943-47108962 | MS.gene073808:CDS | 50.0% | |
GGTAACCGAAACCTGCAACA+AGG | + | chr1.3:47108951-47108970 | None:intergenic | 50.0% | |
GTGTTCCTCTTTCCCAACCA+TGG | + | chr1.3:47108924-47108943 | None:intergenic | 50.0% | |
TATTCTTCTGCACCACCGCT+TGG | - | chr1.3:47108642-47108661 | MS.gene073808:CDS | 50.0% | |
TGAAGAGGGGAAGGAAGTGA+AGG | - | chr1.3:47108743-47108762 | MS.gene073808:CDS | 50.0% | |
TGGAGAGATCCAACGGTTGT+GGG | - | chr1.3:47108986-47109005 | MS.gene073808:CDS | 50.0% | |
TTGGAGAGATCCAACGGTTG+TGG | - | chr1.3:47108985-47109004 | MS.gene073808:CDS | 50.0% | |
! | CCAACGGTTGTGGGAAGTTT+TGG | - | chr1.3:47108995-47109014 | MS.gene073808:CDS | 50.0% |
! | TAACCGCACCGTTTTCACAC+TGG | - | chr1.3:47108571-47108590 | MS.gene073808:CDS | 50.0% |
!! | TTTGGGTTGTGAAGAGGGGA+AGG | - | chr1.3:47108734-47108753 | MS.gene073808:CDS | 50.0% |
!!! | GGGTGTTTTGGGTTGTGAAG+AGG | - | chr1.3:47108728-47108747 | MS.gene073808:CDS | 50.0% |
AGAGGGGAAGGAAGTGAAGG+AGG | - | chr1.3:47108746-47108765 | MS.gene073808:CDS | 55.0% | |
CACCCACCAATCTCCAACAC+CGG | + | chr1.3:47108713-47108732 | None:intergenic | 55.0% | |
CCAAAACATGCACCAAGCGG+TGG | + | chr1.3:47108657-47108676 | None:intergenic | 55.0% | |
CCTCCAGTGTGAAAACGGTG+CGG | + | chr1.3:47108577-47108596 | None:intergenic | 55.0% | |
CGGCTCACCGTCTCGATAAA+CGG | + | chr1.3:47108693-47108712 | None:intergenic | 55.0% | |
CGTTTATCGAGACGGTGAGC+CGG | - | chr1.3:47108691-47108710 | MS.gene073808:CDS | 55.0% | |
GAAGGAAGTGAAGGAGGTGG+CGG | - | chr1.3:47108752-47108771 | MS.gene073808:CDS | 55.0% | |
GAGAAGGAGTAGCACAGCGT+CGG | + | chr1.3:47108514-47108533 | None:intergenic | 55.0% | |
GGAACACGTGTCCTTGTTGC+AGG | - | chr1.3:47108937-47108956 | MS.gene073808:CDS | 55.0% | |
! | AGCCGGTGTTGGAGATTGGT+GGG | - | chr1.3:47108708-47108727 | MS.gene073808:CDS | 55.0% |
!!! | CCACCGCTTGGTGCATGTTT+TGG | - | chr1.3:47108654-47108673 | MS.gene073808:CDS | 55.0% |
GACGGTGGTTTCTTTGCCGG+CGG | - | chr1.3:47108785-47108804 | MS.gene073808:CDS | 60.0% | |
GGCGACGGTGGTTTCTTTGC+CGG | - | chr1.3:47108782-47108801 | MS.gene073808:CDS | 60.0% | |
GGGGAAGGAAGTGAAGGAGG+TGG | - | chr1.3:47108749-47108768 | MS.gene073808:CDS | 60.0% | |
! | AGTGAAGGAGGTGGCGGCTT+CGG | - | chr1.3:47108758-47108777 | MS.gene073808:CDS | 60.0% |
! | CCGCACCGTTTTCACACTGG+AGG | - | chr1.3:47108574-47108593 | MS.gene073808:CDS | 60.0% |
! | GAGCCGGTGTTGGAGATTGG+TGG | - | chr1.3:47108707-47108726 | MS.gene073808:CDS | 60.0% |
! | GGTGAGCCGGTGTTGGAGAT+TGG | - | chr1.3:47108704-47108723 | MS.gene073808:CDS | 60.0% |
!! | CGGTGGAGGTGAGTGTTGGT+GGG | - | chr1.3:47108805-47108824 | MS.gene073808:CDS | 60.0% |
CCAACACTCACCTCCACCGC+CGG | + | chr1.3:47108804-47108823 | None:intergenic | 65.0% | |
GGTGGTTTCTTTGCCGGCGG+TGG | - | chr1.3:47108788-47108807 | MS.gene073808:CDS | 65.0% | |
GGTTTCTTTGCCGGCGGTGG+AGG | - | chr1.3:47108791-47108810 | MS.gene073808:CDS | 65.0% | |
TCGAGACGGTGAGCCGGTGT+TGG | - | chr1.3:47108697-47108716 | MS.gene073808:CDS | 65.0% | |
!! | GCGGTGGAGGTGAGTGTTGG+TGG | - | chr1.3:47108804-47108823 | MS.gene073808:CDS | 65.0% |
CCGGCGGTGGAGGTGAGTGT+TGG | - | chr1.3:47108801-47108820 | MS.gene073808:CDS | 70.0% | |
! | GAAGGAGGTGGCGGCTTCGG+CGG | - | chr1.3:47108761-47108780 | MS.gene073808:CDS | 70.0% |
!! | GGTGGCGGCTTCGGCGGCGA+CGG | - | chr1.3:47108767-47108786 | MS.gene073808:CDS | 80.0% |
! | GGCGGCTTCGGCGGCGACGG+TGG | - | chr1.3:47108770-47108789 | MS.gene073808:CDS | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 47108495 | 47109055 | 47108495 | ID=MS.gene073808 |
chr1.3 | mRNA | 47108495 | 47109055 | 47108495 | ID=MS.gene073808.t1;Parent=MS.gene073808 |
chr1.3 | exon | 47108495 | 47109055 | 47108495 | ID=MS.gene073808.t1.exon1;Parent=MS.gene073808.t1 |
chr1.3 | CDS | 47108495 | 47109055 | 47108495 | ID=cds.MS.gene073808.t1;Parent=MS.gene073808.t1 |
Gene Sequence |
Protein sequence |