AlfalfaGEDB | MS.gene073808

M. sativa cultivar XinJiangDaYe / MS.gene073808

KEGG: -
GO: -
PFAM: PF13639.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073808.t1	XP_024634632.1	98.3	181	3	0	1	181	96	276	7.30E-102	379.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073808.t1	Q8GXF8	52.8	193	75	3	1	181	93	281	5.0e-51	202.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073808.t1	A0A396JUE4	98.3	181	3	0	1	181	96	276	5.3e-102	379.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051582	MS.gene073808	0.818972	1.48E-52	-1.69E-46
MS.gene052253	MS.gene073808	0.826388	2.79E-54	-1.69E-46
MS.gene052485	MS.gene073808	0.804052	2.60E-49	-1.69E-46
MS.gene054183	MS.gene073808	0.8044	2.20E-49	-1.69E-46
MS.gene054918	MS.gene073808	0.811683	6.19E-51	-1.69E-46
MS.gene055116	MS.gene073808	0.82267	2.09E-53	-1.69E-46
MS.gene056723	MS.gene073808	0.804448	2.15E-49	-1.69E-46
MS.gene059011	MS.gene073808	0.806984	6.31E-50	-1.69E-46
MS.gene059420	MS.gene073808	0.823153	1.61E-53	-1.69E-46
MS.gene059688	MS.gene073808	0.815316	9.84E-52	-1.69E-46

Showing 1 to 10 of 11 entries

Previous1 2Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073808.t1	MTR_1g067260	98.425	127	2	0	1	127	96	222	3.02e-85	253
MS.gene073808.t1	MTR_7g074170	39.823	113	58	3	55	162	286	393	4.36e-18	81.3
MS.gene073808.t1	MTR_2g097620	47.222	72	34	1	94	161	165	236	2.46e-17	78.6
MS.gene073808.t1	MTR_1g114620	49.296	71	34	1	94	162	242	312	3.41e-17	78.2
MS.gene073808.t1	MTR_6g079660	41.892	74	38	1	94	162	210	283	1.15e-15	73.9
MS.gene073808.t1	MTR_4g110100	48.000	75	34	1	94	163	335	409	1.58e-15	73.9
MS.gene073808.t1	MTR_5g041310	36.735	98	59	2	65	161	67	162	1.84e-15	72.0
MS.gene073808.t1	MTR_4g064570	48.611	72	33	1	94	161	157	228	3.99e-15	72.4
MS.gene073808.t1	MTR_5g041330	42.857	70	39	1	94	162	84	153	4.12e-15	70.9
MS.gene073808.t1	MTR_6g016350	57.143	49	21	0	114	162	311	359	8.95e-15	71.6

Showing 1 to 10 of 21 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene073808.t1	AT5G02750	49.223	193	82	3	1	181	93	281	1.06e-57	182
MS.gene073808.t1	AT5G60820	68.750	48	15	0	114	161	372	419	8.52e-19	83.2
MS.gene073808.t1	AT3G02340	35.556	135	79	2	37	163	250	384	2.38e-18	82.0
MS.gene073808.t1	AT3G02340	35.556	135	79	2	37	163	250	384	2.38e-18	82.0
MS.gene073808.t1	AT5G08139	50.000	64	32	0	99	162	294	357	3.21e-17	78.6
MS.gene073808.t1	AT3G19950	36.957	92	53	1	76	162	173	264	5.08e-17	77.8
MS.gene073808.t1	AT3G19950	36.957	92	53	1	76	162	231	322	5.91e-17	77.8
MS.gene073808.t1	AT3G19950	36.957	92	53	1	76	162	231	322	5.91e-17	77.8
MS.gene073808.t1	AT5G15820	45.679	81	39	1	94	169	266	346	2.04e-16	76.3
MS.gene073808.t1	AT3G46620	45.946	74	36	1	94	163	191	264	1.02e-15	74.3

Showing 1 to 10 of 37 entries

Previous1 2 3 4Next

Find 51 sgRNAs with CRISPR-Local

Find 65 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTAGTGCTAAACATAAC+AGG	0.443732	1.3:-47108507	MS.gene073808:CDS
AACGGTGCGGTTAATGCTTC+TGG	0.240119	1.3:+47108967	None:intergenic
AGAAAGCCTTAACAATGTGT+TGG	0.545710	1.3:+47108909	None:intergenic
AGAGGGGAAGGAAGTGAAGG+AGG	0.486989	1.3:-47108782	MS.gene073808:CDS
AGCCGGTGTTGGAGATTGGT+GGG	0.508824	1.3:-47108820	MS.gene073808:CDS
AGTGAAGGAGGTGGCGGCTT+CGG	0.342382	1.3:-47108770	MS.gene073808:CDS
CAATGAAACAAATGCTGACA+TGG	0.516627	1.3:+47108643	None:intergenic
CACCCACCAATCTCCAACAC+CGG	0.558850	1.3:+47108818	None:intergenic
CATGTCAGCATTTGTTTCAT+TGG	0.329624	1.3:-47108642	MS.gene073808:CDS
CCAAAACATGCACCAAGCGG+TGG	0.645373	1.3:+47108874	None:intergenic

Showing 1 to 10 of 51 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGAAAGCCTTAACAATGTGT+TGG	+	chr1.3:47108622-47108641	None:intergenic	35.0%
CAATGAAACAAATGCTGACA+TGG	+	chr1.3:47108888-47108907	None:intergenic	35.0%
CATGTCAGCATTTGTTTCAT+TGG	-	chr1.3:47108886-47108905	MS.gene073808:CDS	35.0%
GATCTCTCCAAAAACATCAT+CGG	+	chr1.3:47108976-47108995	None:intergenic	35.0%
GTAAAGAAGAGATGCAAGTA+GGG	-	chr1.3:47108844-47108863	MS.gene073808:CDS	35.0%
TCTTCTCCAACACATTGTTA+AGG	-	chr1.3:47108613-47108632	MS.gene073808:CDS	35.0%
TGTAAAGAAGAGATGCAAGT+AGG	-	chr1.3:47108843-47108862	MS.gene073808:CDS	35.0%
TTTGATTCCGTTTATCGAGA+CGG	-	chr1.3:47108683-47108702	MS.gene073808:CDS	35.0%
GTGTTTCACAGAACAAGAGA+AGG	+	chr1.3:47108530-47108549	None:intergenic	40.0%
TCTCCAAAAACATCATCGGA+CGG	+	chr1.3:47108972-47108991	None:intergenic	40.0%

Showing 1 to 10 of 65 entries

Previous1 2 3 4 5 6 7Next

Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	47108495	47109055	47108495	ID=MS.gene073808
chr1.3	mRNA	47108495	47109055	47108495	ID=MS.gene073808.t1;Parent=MS.gene073808
chr1.3	exon	47108495	47109055	47108495	ID=MS.gene073808.t1.exon1;Parent=MS.gene073808.t1
chr1.3	CDS	47108495	47109055	47108495	ID=cds.MS.gene073808.t1;Parent=MS.gene073808.t1

Gene Sequence

>MS.gene073808

ATGAGAGAACGTGACACCGACGCTGTGCTACTCCTTCTCTTGTTCTGTGAAACACATAAACACAATCCAGAAGCATTAACCGCACCGTTTTCACACTGGAGGCTAAACTTGAACAAAATCTTCTCCAACACATTGTTAAGGCTTTCTTATTCTTCTGCACCACCGCTTGGTGCATGTTTTGGATCGGTTTTGATTCCGTTTATCGAGACGGTGAGCCGGTGTTGGAGATTGGTGGGTGTTTTGGGTTGTGAAGAGGGGAAGGAAGTGAAGGAGGTGGCGGCTTCGGCGGCGACGGTGGTTTCTTTGCCGGCGGTGGAGGTGAGTGTTGGTGGGAGAGAGTGTGTGATATGTAAAGAAGAGATGCAAGTAGGGAGAGACGTGTGTGAATTGCCATGTCAGCATTTGTTTCATTGGATGTGTATTTTACCATGGTTGGGAAAGAGGAACACGTGTCCTTGTTGCAGGTTTCGGTTACCGTCCGATGATGTTTTTGGAGAGATCCAACGGTTGTGGGAAGTTTTGGTTAAAATTAGTGCTAAACATAACAGGATGACTGATTAA

Protein sequence

>MS.gene073808.t1

MRERDTDAVLLLLLFCETHKHNPEALTAPFSHWRLNLNKIFSNTLLRLSYSSAPPLGACFGSVLIPFIETVSRCWRLVGVLGCEEGKEVKEVAASAATVVSLPAVEVSVGGRECVICKEEMQVGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRFRLPSDDVFGEIQRLWEVLVKISAKHNRMTD