Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073921.t1 | XP_003590173.2 | 99.1 | 798 | 7 | 0 | 1 | 798 | 1 | 798 | 0.00E+00 | 1318.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073921.t1 | O23052 | 77.7 | 806 | 170 | 5 | 1 | 798 | 1 | 804 | 1.8e-294 | 1013.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073921.t1 | G7I6P0 | 99.1 | 798 | 7 | 0 | 1 | 798 | 1 | 798 | 0.0e+00 | 1318.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050361 | MS.gene073921 | 0.834196 | 3.45E-56 | -1.69E-46 |
| MS.gene050654 | MS.gene073921 | 0.807989 | 3.86E-50 | -1.69E-46 |
| MS.gene052994 | MS.gene073921 | 0.816105 | 6.56E-52 | -1.69E-46 |
| MS.gene056480 | MS.gene073921 | 0.828433 | 9.02E-55 | -1.69E-46 |
| MS.gene057869 | MS.gene073921 | 0.806415 | 8.32E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene073921 | 0.843564 | 1.30E-58 | -1.69E-46 |
| MS.gene060932 | MS.gene073921 | 0.831001 | 2.14E-55 | -1.69E-46 |
| MS.gene061006 | MS.gene073921 | 0.814413 | 1.56E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene073921 | MS.gene002070 | PPI |
| MS.gene073921 | MS.gene002687 | PPI |
| MS.gene41781 | MS.gene073921 | PPI |
| MS.gene067862 | MS.gene073921 | PPI |
| MS.gene042471 | MS.gene073921 | PPI |
| MS.gene073921 | MS.gene004367 | PPI |
| MS.gene00644 | MS.gene073921 | PPI |
| MS.gene43594 | MS.gene073921 | PPI |
| MS.gene072035 | MS.gene073921 | PPI |
| MS.gene073921 | MS.gene05802 | PPI |
| MS.gene047176 | MS.gene073921 | PPI |
| MS.gene08159 | MS.gene073921 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073921.t1 | MTR_1g045490 | 99.123 | 798 | 7 | 0 | 1 | 798 | 1 | 798 | 0.0 | 1640 |
| MS.gene073921.t1 | MTR_1g079510 | 23.411 | 299 | 196 | 2 | 201 | 473 | 140 | 431 | 2.49e-12 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073921.t1 | AT1G05150 | 77.086 | 803 | 174 | 5 | 1 | 795 | 1 | 801 | 0.0 | 1313 |
| MS.gene073921.t1 | AT2G32450 | 77.000 | 800 | 174 | 6 | 1 | 795 | 1 | 795 | 0.0 | 1296 |
| MS.gene073921.t1 | AT3G04240 | 26.506 | 249 | 168 | 3 | 201 | 449 | 131 | 364 | 2.07e-13 | 74.7 |
| MS.gene073921.t1 | AT3G04240 | 22.846 | 267 | 180 | 2 | 233 | 473 | 88 | 354 | 5.10e-12 | 70.5 |
| MS.gene073921.t1 | AT3G04240 | 23.715 | 253 | 161 | 4 | 233 | 473 | 190 | 422 | 4.00e-11 | 67.4 |
| MS.gene073921.t1 | AT3G04240 | 25.926 | 243 | 168 | 2 | 233 | 473 | 54 | 286 | 9.46e-11 | 66.2 |
Find 198 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTATCGGTTCGCGCTTTA+AGG | 0.091534 | 1.1:+28576491 | MS.gene073921:CDS |
| AGAAAGAATCCTCTCATTTA+TGG | 0.127070 | 1.1:-28576076 | None:intergenic |
| ATTGATGCTCTTTATAATTT+AGG | 0.139271 | 1.1:+28575505 | MS.gene073921:CDS |
| GATGATCCAGATTGGGGTTT+TGG | 0.192976 | 1.1:+28576387 | MS.gene073921:CDS |
| TAATTTAGGTGGATTGTATA+TGG | 0.219261 | 1.1:+28575519 | MS.gene073921:CDS |
| TTAAAGCGCGAACCGATAAT+AGG | 0.224124 | 1.1:-28576489 | None:intergenic |
| GCAGGAAGAGTACAGATTTA+AGG | 0.228301 | 1.1:+28576581 | MS.gene073921:CDS |
| GTATGAACATCAATTGTTTA+AGG | 0.249934 | 1.1:+28575003 | MS.gene073921:CDS |
| AAGCATTGAAAATGACAAAT+AGG | 0.254087 | 1.1:+28575683 | MS.gene073921:CDS |
| TGAGAGGATTCTTTCTGTTT+TGG | 0.256631 | 1.1:+28576083 | MS.gene073921:CDS |
| TTTCTTCCAAGTTCGGTTTC+CGG | 0.269538 | 1.1:-28575996 | None:intergenic |
| GAGTACAGATTTAAGGAGTA+TGG | 0.280282 | 1.1:+28576588 | MS.gene073921:CDS |
| TGAGTGCTTGTGAGTATTAT+AGG | 0.285254 | 1.1:+28575251 | MS.gene073921:CDS |
| GCTAAAGATGGGAAAATTAA+AGG | 0.286177 | 1.1:+28574773 | MS.gene073921:CDS |
| TGCTGGTTGGTCTCGCGAAT+TGG | 0.301878 | 1.1:+28574820 | MS.gene073921:CDS |
| GCTGGTTGGTCTCGCGAATT+GGG | 0.304388 | 1.1:+28574821 | MS.gene073921:CDS |
| TTTCGGATAAGAGAGTAGTT+TGG | 0.308920 | 1.1:+28574858 | MS.gene073921:CDS |
| CATCATGATTCGCGTCGAAT+TGG | 0.309699 | 1.1:-28574325 | None:intergenic |
| GCAAGTACACTTATCTTTCA+TGG | 0.311003 | 1.1:-28576625 | None:intergenic |
| GAAGACTCCGGCGCCGGATT+CGG | 0.314641 | 1.1:+28574586 | MS.gene073921:CDS |
| GGTAATTGTTATTATGTTCT+TGG | 0.314765 | 1.1:+28575094 | MS.gene073921:CDS |
| TGAGATGTATACGAGAGTTT+TGG | 0.329243 | 1.1:+28575567 | MS.gene073921:CDS |
| GAGTGCTTGTGAGTATTATA+GGG | 0.332729 | 1.1:+28575252 | MS.gene073921:CDS |
| GGGGCCTTCGACTGAGATTT+CGG | 0.342250 | 1.1:+28574841 | MS.gene073921:CDS |
| CGTTAACCTTGGTATTTCAT+TGG | 0.351194 | 1.1:+28575210 | MS.gene073921:CDS |
| CCAGATACATCCAGTTGTTA+AGG | 0.351923 | 1.1:+28576265 | MS.gene073921:CDS |
| TTCGGATAAGAGAGTAGTTT+GGG | 0.353030 | 1.1:+28574859 | MS.gene073921:CDS |
| CTCTGGAGGACCACCACAAA+TGG | 0.355655 | 1.1:-28576160 | None:intergenic |
| GATGTGCCGGTGTCGTATTC+TGG | 0.361458 | 1.1:+28575949 | MS.gene073921:CDS |
| TTATGTTCTTGGAAGGTATA+AGG | 0.364044 | 1.1:+28575105 | MS.gene073921:CDS |
| ATTAGCACCGTCTTCGTTCA+TGG | 0.368955 | 1.1:-28576223 | None:intergenic |
| ACTTATGCTGAATTTATTGA+TGG | 0.370013 | 1.1:+28574452 | MS.gene073921:CDS |
| CCAAGGTGTTAGCGAATTGA+TGG | 0.371774 | 1.1:+28576305 | MS.gene073921:CDS |
| TGGCTGTGTGGCCGAATCAT+TGG | 0.382968 | 1.1:+28575587 | MS.gene073921:CDS |
| CCTTAACAACTGGATGTATC+TGG | 0.383500 | 1.1:-28576265 | None:intergenic |
| CGAAGAATTTCTTCCAAGTT+CGG | 0.385586 | 1.1:-28576003 | None:intergenic |
| AGAGTAGTTTGGGATGAATC+AGG | 0.389194 | 1.1:+28574869 | MS.gene073921:CDS |
| GCTATTCTTGCTCCCATTTG+TGG | 0.391363 | 1.1:+28576147 | MS.gene073921:CDS |
| ATGACAAATGGCGATTCTTC+CGG | 0.395230 | 1.1:-28575778 | None:intergenic |
| TATGTTTGATGATCCAGATT+GGG | 0.395444 | 1.1:+28576380 | MS.gene073921:CDS |
| CATAAACAGCCCTTAACAAC+TGG | 0.401595 | 1.1:-28576275 | None:intergenic |
| ATGGTGCTGGTGATGTTGAT+AGG | 0.403408 | 1.1:+28574519 | MS.gene073921:CDS |
| GGAATATAAGGCTGCTGTTA+AGG | 0.403774 | 1.1:+28575345 | MS.gene073921:CDS |
| TTTAGAGCTTTGAAACTGTT+AGG | 0.403876 | 1.1:+28575301 | MS.gene073921:CDS |
| GAACAAGGCTGTGTCGTTGC+TGG | 0.409634 | 1.1:+28575621 | MS.gene073921:CDS |
| GTGTGCCGCTACCCTATTAT+CGG | 0.410668 | 1.1:+28576477 | MS.gene073921:CDS |
| ACAGCTCCTTGAAAAGTGTC+TGG | 0.414755 | 1.1:-28576048 | None:intergenic |
| AAGAACATAATAACAATTAC+CGG | 0.417448 | 1.1:-28575092 | None:intergenic |
| GTCCTCCAGAGAGACGTAAA+AGG | 0.418171 | 1.1:+28576172 | MS.gene073921:CDS |
| AACTGCGCCCGCCAATGATT+CGG | 0.418538 | 1.1:-28575598 | None:intergenic |
| AATTGCAACCTGTTGATGTT+AGG | 0.419007 | 1.1:+28575056 | MS.gene073921:CDS |
| TGAGAGGGGTTTGACTTATG+AGG | 0.422203 | 1.1:+28574475 | MS.gene073921:CDS |
| GACGACGAAGCCTCCGAATC+CGG | 0.424113 | 1.1:-28574599 | None:intergenic |
| TTTGATGCTTATTCTGATGC+TGG | 0.425129 | 1.1:+28574803 | MS.gene073921:CDS |
| GAAGGCTATTGATTTGAAAC+CGG | 0.425202 | 1.1:+28575477 | MS.gene073921:CDS |
| ACCTTAGTGAAGCTTGAAAC+AGG | 0.426443 | 1.1:+28576420 | MS.gene073921:CDS |
| TGCACATTGTGATCTGGCTT+CGG | 0.426766 | 1.1:+28575408 | MS.gene073921:CDS |
| TGCTGATGCACATTGTGATC+TGG | 0.428424 | 1.1:+28575402 | MS.gene073921:CDS |
| AGGTGGATTGTATATGGACT+TGG | 0.432754 | 1.1:+28575525 | MS.gene073921:CDS |
| GCACTTGAAGCTGCTGAGGC+TGG | 0.432831 | 1.1:+28575151 | MS.gene073921:CDS |
| TCGTCGCACCTTCTCCGATC+TGG | 0.433820 | 1.1:-28574294 | None:intergenic |
| AAATGAGGCCTAACATCAAC+AGG | 0.435494 | 1.1:-28575064 | None:intergenic |
| CTGAGGCTGGTGGAAATCAA+TGG | 0.435659 | 1.1:+28575164 | MS.gene073921:CDS |
| ATCCATCCGGAAACCGAACT+TGG | 0.438061 | 1.1:+28575990 | MS.gene073921:CDS |
| CAGATACATCCAGTTGTTAA+GGG | 0.440498 | 1.1:+28576266 | MS.gene073921:CDS |
| GCTGTGTCGTTGCTGGGAGC+TGG | 0.440564 | 1.1:+28575628 | MS.gene073921:CDS |
| TCTTCCTGCTTAAATGTAGA+AGG | 0.441960 | 1.1:-28576567 | None:intergenic |
| TAAAGCGCGAACCGATAATA+GGG | 0.442618 | 1.1:-28576488 | None:intergenic |
| ATCATGATTCGCGTCGAATT+GGG | 0.445997 | 1.1:-28574324 | None:intergenic |
| TTTGATGGACATATGGCAAT+TGG | 0.447629 | 1.1:+28574971 | MS.gene073921:CDS |
| GAAGAAATGGCGTCGCTTGT+TGG | 0.450116 | 1.1:+28574362 | MS.gene073921:CDS |
| AGCATTGAAAATGACAAATA+GGG | 0.458819 | 1.1:+28575684 | MS.gene073921:CDS |
| TTCATTGGAAGGTGAAGGTA+TGG | 0.460120 | 1.1:+28575225 | MS.gene073921:CDS |
| GGTTCAGGCAGATTAGATCT+TGG | 0.460339 | 1.1:+28576114 | MS.gene073921:CDS |
| CATCAATTCGCTAACACCTT+GGG | 0.469273 | 1.1:-28576304 | None:intergenic |
| ATCACCAACTGTCTTAAACT+TGG | 0.470600 | 1.1:-28575812 | None:intergenic |
| AAAAGAAGAACAAACCCAAT+GGG | 0.477510 | 1.1:+28575749 | MS.gene073921:CDS |
| TTAGCACCGTCTTCGTTCAT+GGG | 0.478305 | 1.1:-28576222 | None:intergenic |
| GATTGTATATGGACTTGGGT+AGG | 0.484500 | 1.1:+28575530 | MS.gene073921:CDS |
| GAAGCAGCGGACAGCTGCGT+GGG | 0.488728 | 1.1:+28574658 | MS.gene073921:CDS |
| TCTTCCGGAGTATCCCCATT+GGG | 0.488844 | 1.1:-28575763 | None:intergenic |
| CTTGCTTTAACTTGCAATCA+CGG | 0.490282 | 1.1:+28576643 | MS.gene073921:CDS |
| GCTGTTTATGTTCCTTCCCA+AGG | 0.490782 | 1.1:+28576288 | MS.gene073921:CDS |
| TCCTGTTTCAAGCTTCACTA+AGG | 0.493440 | 1.1:-28576421 | None:intergenic |
| AACCTTGGTATTTCATTGGA+AGG | 0.494888 | 1.1:+28575214 | MS.gene073921:CDS |
| CCATCAATTCGCTAACACCT+TGG | 0.498413 | 1.1:-28576305 | None:intergenic |
| CTGAATTTATTGATGGTGAG+AGG | 0.498743 | 1.1:+28574459 | MS.gene073921:CDS |
| ATGCTTATTCTGATGCTGGT+TGG | 0.499363 | 1.1:+28574807 | MS.gene073921:CDS |
| ATAATACCAAAACCCCAATC+TGG | 0.499632 | 1.1:-28576393 | None:intergenic |
| GATCTTAATGTTGATGAGGC+GGG | 0.503068 | 1.1:+28574563 | MS.gene073921:CDS |
| TTGTTGGTGCTGTAAACCCT+AGG | 0.505292 | 1.1:+28574378 | MS.gene073921:CDS |
| TGCTCTGATTTGCAGAGCAC+TGG | 0.505293 | 1.1:-28575860 | None:intergenic |
| GGGTTTGAATAGGGAAGAAA+TGG | 0.505358 | 1.1:+28574349 | MS.gene073921:CDS |
| TCATCGCTGAATTTCACCCT+AGG | 0.505804 | 1.1:-28574395 | None:intergenic |
| TATACATCTCAGAAGCCCTC+TGG | 0.506094 | 1.1:-28575555 | None:intergenic |
| AGTGCCTTCTACATTTAAGC+AGG | 0.506565 | 1.1:+28576563 | MS.gene073921:CDS |
| ATTTAAGGAGTATGGAAATG+AGG | 0.508497 | 1.1:+28576596 | MS.gene073921:CDS |
| GACTCCGGCGCCGGATTCGG+AGG | 0.508700 | 1.1:+28574589 | MS.gene073921:CDS |
| ATTGTTATTATGTTCTTGGA+AGG | 0.509069 | 1.1:+28575098 | MS.gene073921:CDS |
| CATCGCTGAATTTCACCCTA+GGG | 0.509482 | 1.1:-28574394 | None:intergenic |
| GTTGGCACTTGAAGCTGCTG+AGG | 0.511145 | 1.1:+28575147 | MS.gene073921:CDS |
| CAATTCGACGCGAATCATGA+TGG | 0.511494 | 1.1:+28574326 | MS.gene073921:CDS |
| TTCCAAGTTCGGTTTCCGGA+TGG | 0.512298 | 1.1:-28575992 | None:intergenic |
| AAGTTGAAGCAAGCTAAAGA+TGG | 0.512508 | 1.1:+28574761 | MS.gene073921:CDS |
| GATGGTTCAACTATGACAAA+TGG | 0.513195 | 1.1:-28575790 | None:intergenic |
| GAGAGGGGTTTGACTTATGA+GGG | 0.513223 | 1.1:+28574476 | MS.gene073921:CDS |
| CAATGTGCATCAGCATAATC+CGG | 0.513831 | 1.1:-28575394 | None:intergenic |
| CCAACTGTCTTAAACTTGGA+TGG | 0.518220 | 1.1:-28575808 | None:intergenic |
| TCTGGAGGACCACCACAAAT+GGG | 0.519206 | 1.1:-28576159 | None:intergenic |
| GGCGGGGAAGACTCCGGCGC+CGG | 0.519573 | 1.1:+28574580 | MS.gene073921:CDS |
| CCATCCAAGTTTAAGACAGT+TGG | 0.521392 | 1.1:+28575808 | MS.gene073921:CDS |
| GATGCTCTTTATAATTTAGG+TGG | 0.522580 | 1.1:+28575508 | MS.gene073921:CDS |
| TTCTTCCGGAGTATCCCCAT+TGG | 0.523550 | 1.1:-28575764 | None:intergenic |
| AATTCGACGCGAATCATGAT+GGG | 0.523961 | 1.1:+28574327 | MS.gene073921:CDS |
| AACAAGGCTGTGTCGTTGCT+GGG | 0.526390 | 1.1:+28575622 | MS.gene073921:CDS |
| CCGGTGTCGTATTCTGGTAC+CGG | 0.527238 | 1.1:+28575955 | MS.gene073921:CDS |
| TGGGCAGTGTCGCCGAATCA+CGG | 0.531689 | 1.1:+28574677 | MS.gene073921:CDS |
| TTATGTTTGATGATCCAGAT+TGG | 0.532134 | 1.1:+28576379 | MS.gene073921:CDS |
| GGTGGATTGTATATGGACTT+GGG | 0.533769 | 1.1:+28575526 | MS.gene073921:CDS |
| CCACAGATTTACGTTAACCT+TGG | 0.534817 | 1.1:+28575199 | MS.gene073921:CDS |
| GTATTCTGGTACCGGAGTGC+CGG | 0.535859 | 1.1:+28575963 | MS.gene073921:CDS |
| TGAGGCTGGTGGAAATCAAT+GGG | 0.536232 | 1.1:+28575165 | MS.gene073921:CDS |
| TCAAACACAATACCGTGATT+CGG | 0.538867 | 1.1:-28574689 | None:intergenic |
| ACGCCACAACAGTGCATCAA+AGG | 0.539130 | 1.1:-28576199 | None:intergenic |
| GGTATTTCATTGGAAGGTGA+AGG | 0.539408 | 1.1:+28575220 | MS.gene073921:CDS |
| TGCTGTTAAGGCGCTTGAAG+AGG | 0.540825 | 1.1:+28575357 | MS.gene073921:CDS |
| TTTAAGGAGTATGGAAATGA+GGG | 0.541065 | 1.1:+28576597 | MS.gene073921:CDS |
| ATCTTAATGTTGATGAGGCG+GGG | 0.542510 | 1.1:+28574564 | MS.gene073921:CDS |
| AGCGAATTGATGGAGGTTCG+TGG | 0.549361 | 1.1:+28576315 | MS.gene073921:CDS |
| GAGCACTTCAGAAGGTTGCT+AGG | 0.552630 | 1.1:+28575878 | MS.gene073921:CDS |
| TGGTGCTGGTGATGTTGATA+GGG | 0.553001 | 1.1:+28574520 | MS.gene073921:CDS |
| TGAGGATGAGAGGGCGATTG+AGG | 0.555091 | 1.1:+28575447 | MS.gene073921:CDS |
| TGAACATCAATTGTTTAAGG+AGG | 0.556104 | 1.1:+28575006 | MS.gene073921:CDS |
| TGATAAGACTACTGTGAGGC+AGG | 0.563005 | 1.1:+28575831 | MS.gene073921:CDS |
| AGGCTTTAATTAGTTTCAAG+AGG | 0.563231 | 1.1:+28575026 | MS.gene073921:CDS |
| AAGGCTATTGATTTGAAACC+GGG | 0.563307 | 1.1:+28575478 | MS.gene073921:CDS |
| CTGTGTGGCCGAATCATTGG+CGG | 0.563491 | 1.1:+28575590 | MS.gene073921:CDS |
| ATGTTTGATGATCCAGATTG+GGG | 0.563924 | 1.1:+28576381 | MS.gene073921:CDS |
| GGCGATTGAGGTGTTTCAGA+AGG | 0.565595 | 1.1:+28575459 | MS.gene073921:CDS |
| TGATGAGGCGGGGAAGACTC+CGG | 0.565993 | 1.1:+28574574 | MS.gene073921:CDS |
| CTTGAAGCTGCTGAGGCTGG+TGG | 0.566338 | 1.1:+28575154 | MS.gene073921:CDS |
| AGAACTTATGATGATGGTGC+TGG | 0.568989 | 1.1:+28574506 | MS.gene073921:CDS |
| GAAGCCTCCGAATCCGGCGC+CGG | 0.572219 | 1.1:-28574593 | None:intergenic |
| AGTTGAAGCAAGCTAAAGAT+GGG | 0.572882 | 1.1:+28574762 | MS.gene073921:CDS |
| CAATTACCGGCTCTAAAATG+AGG | 0.573747 | 1.1:-28575079 | None:intergenic |
| ATTCTTGCTCCCATTTGTGG+TGG | 0.574006 | 1.1:+28576150 | MS.gene073921:CDS |
| AAGAGGCACCAGATCGGAGA+AGG | 0.575767 | 1.1:+28574286 | MS.gene073921:CDS |
| GGCTTTAATTAGTTTCAAGA+GGG | 0.576280 | 1.1:+28575027 | MS.gene073921:CDS |
| TGATCTTAATGTTGATGAGG+CGG | 0.578590 | 1.1:+28574562 | MS.gene073921:CDS |
| TCTTGATCTTAATGTTGATG+AGG | 0.580621 | 1.1:+28574559 | MS.gene073921:CDS |
| TGTGTGGCCGAATCATTGGC+GGG | 0.581219 | 1.1:+28575591 | MS.gene073921:CDS |
| GCAAATCAGAGCACTTCAGA+AGG | 0.581238 | 1.1:+28575870 | MS.gene073921:CDS |
| TTGGCGGGCGCAGTTGAACA+AGG | 0.581691 | 1.1:+28575606 | MS.gene073921:CDS |
| CGTCGTCGATTGTTGATGAG+AGG | 0.586246 | 1.1:+28574615 | MS.gene073921:CDS |
| CAAACCCAATGGGGATACTC+CGG | 0.586605 | 1.1:+28575759 | MS.gene073921:CDS |
| TGGAGACGTAGACACTTCAA+TGG | 0.586995 | 1.1:+28576335 | MS.gene073921:CDS |
| AAGTTGAAAATGGCGACAAG+AGG | 0.588366 | 1.1:+28574269 | None:intergenic |
| GTCGATTGTTGATGAGAGGA+TGG | 0.588641 | 1.1:+28574619 | MS.gene073921:CDS |
| CTGGTTGGTCTCGCGAATTG+GGG | 0.593676 | 1.1:+28574822 | MS.gene073921:CDS |
| GGCTTTGCATGCTATGCGTG+AGG | 0.593677 | 1.1:+28575429 | MS.gene073921:CDS |
| GAGTAGTTTGGGATGAATCA+GGG | 0.595631 | 1.1:+28574870 | MS.gene073921:CDS |
| AGAAGCAGCGGACAGCTGCG+TGG | 0.598942 | 1.1:+28574657 | MS.gene073921:CDS |
| TGAATTTATTGATGGTGAGA+GGG | 0.600926 | 1.1:+28574460 | MS.gene073921:CDS |
| GAATTTATTGATGGTGAGAG+GGG | 0.601386 | 1.1:+28574461 | MS.gene073921:CDS |
| TCGCCTTTGATGCACTGTTG+TGG | 0.602680 | 1.1:+28576196 | MS.gene073921:CDS |
| CACCTTCCAATGAAATACCA+AGG | 0.606948 | 1.1:-28575216 | None:intergenic |
| TGCTATGCGTGAGGATGAGA+GGG | 0.607406 | 1.1:+28575438 | MS.gene073921:CDS |
| GTTTCAAGCTTCACTAAGGT+AGG | 0.614099 | 1.1:-28576417 | None:intergenic |
| ATGCTATGCGTGAGGATGAG+AGG | 0.621923 | 1.1:+28575437 | MS.gene073921:CDS |
| GTAGCGGCACACTGCACACA+TGG | 0.621948 | 1.1:-28576466 | None:intergenic |
| AATGAGCGAACATGATGTGC+CGG | 0.625733 | 1.1:+28575936 | MS.gene073921:CDS |
| GGCGACAAGAGGCACCAGAT+CGG | 0.627503 | 1.1:+28574280 | MS.gene073921:CDS |
| TTATCCGAAATCTCAGTCGA+AGG | 0.627881 | 1.1:-28574845 | None:intergenic |
| TGGCGTCCCATGAACGAAGA+CGG | 0.628298 | 1.1:+28576216 | MS.gene073921:CDS |
| TGGACTTGGGTAGGTTCCAG+AGG | 0.630541 | 1.1:+28575539 | MS.gene073921:CDS |
| TTCAAAGCTCTAAAATGCGT+AGG | 0.630809 | 1.1:-28575292 | None:intergenic |
| GGACTTGGGTAGGTTCCAGA+GGG | 0.631626 | 1.1:+28575540 | MS.gene073921:CDS |
| AATCAACGCAATTCTCGATG+AGG | 0.631687 | 1.1:+28574421 | MS.gene073921:CDS |
| TGTAACCAATGCTACAGCGA+AGG | 0.633386 | 1.1:+28576537 | MS.gene073921:CDS |
| TGGAAGGTATAAGGAAGCGA+AGG | 0.636944 | 1.1:+28575114 | MS.gene073921:CDS |
| AGGTGTTAGCGAATTGATGG+AGG | 0.638521 | 1.1:+28576308 | MS.gene073921:CDS |
| TGTTGGTGCTGTAAACCCTA+GGG | 0.640534 | 1.1:+28574379 | MS.gene073921:CDS |
| CTGTGAAAGCCATAAATGAG+AGG | 0.642882 | 1.1:+28576067 | MS.gene073921:CDS |
| TAAAGAGCATCAATATGACC+CGG | 0.642930 | 1.1:-28575496 | None:intergenic |
| CCAAGGTTAACGTAAATCTG+TGG | 0.646831 | 1.1:-28575199 | None:intergenic |
| TAGGTTGAGTCGTTGTAATG+TGG | 0.652395 | 1.1:+28575897 | MS.gene073921:CDS |
| ATTCGACGCGAATCATGATG+GGG | 0.660251 | 1.1:+28574328 | MS.gene073921:CDS |
| GCGAACCGATAATAGGGTAG+CGG | 0.667482 | 1.1:-28576482 | None:intergenic |
| GTATTGTGTTTGATGAGACG+TGG | 0.671842 | 1.1:+28574699 | MS.gene073921:CDS |
| TTGAGTCGCAGAAGAAGCAG+CGG | 0.676108 | 1.1:+28574645 | MS.gene073921:CDS |
| TTCGACGCGAATCATGATGG+GGG | 0.686689 | 1.1:+28574329 | MS.gene073921:CDS |
| AATTCGCTAACACCTTGGGA+AGG | 0.689041 | 1.1:-28576300 | None:intergenic |
| AAAGAAGAACAAACCCAATG+GGG | 0.692654 | 1.1:+28575750 | MS.gene073921:CDS |
| CCGGTACCAGAATACGACAC+CGG | 0.720876 | 1.1:-28575955 | None:intergenic |
| ACAGGAGATAGAAACCGACA+TGG | 0.728698 | 1.1:+28576438 | MS.gene073921:CDS |
| TGCTTGTGAGTATTATAGGG+AGG | 0.742573 | 1.1:+28575255 | MS.gene073921:CDS |
| GATTGTTGATGAGAGGATGG+CGG | 0.753142 | 1.1:+28574622 | MS.gene073921:CDS |
| TTGGTGATAAGACTACTGTG+AGG | 0.814181 | 1.1:+28575827 | MS.gene073921:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAACATAATAACAATTAC+CGG | - | chr1.1:28575095-28575114 | None:intergenic | 20.0% |
| !! | ATTGATGCTCTTTATAATTT+AGG | + | chr1.1:28575505-28575524 | MS.gene073921:CDS | 20.0% |
| !!! | ATTTAGAGATTTTGATAAAG+AGG | + | chr1.1:28574735-28574754 | MS.gene073921:CDS | 20.0% |
| ! | ACTTATGCTGAATTTATTGA+TGG | + | chr1.1:28574452-28574471 | MS.gene073921:CDS | 25.0% |
| ! | GTATGAACATCAATTGTTTA+AGG | + | chr1.1:28575003-28575022 | MS.gene073921:CDS | 25.0% |
| !! | AGCATTGAAAATGACAAATA+GGG | + | chr1.1:28575684-28575703 | MS.gene073921:CDS | 25.0% |
| !! | ATTGTTATTATGTTCTTGGA+AGG | + | chr1.1:28575098-28575117 | MS.gene073921:CDS | 25.0% |
| !! | GGTAATTGTTATTATGTTCT+TGG | + | chr1.1:28575094-28575113 | MS.gene073921:CDS | 25.0% |
| !!! | AAGCATTGAAAATGACAAAT+AGG | + | chr1.1:28575683-28575702 | MS.gene073921:CDS | 25.0% |
| !!! | TAATTTAGGTGGATTGTATA+TGG | + | chr1.1:28575519-28575538 | MS.gene073921:CDS | 25.0% |
| AAAAAGAAGAACAAACCCAA+TGG | + | chr1.1:28575748-28575767 | MS.gene073921:CDS | 30.0% | |
| AAAAGAAGAACAAACCCAAT+GGG | + | chr1.1:28575749-28575768 | MS.gene073921:CDS | 30.0% | |
| AGAAAGAATCCTCTCATTTA+TGG | - | chr1.1:28576079-28576098 | None:intergenic | 30.0% | |
| GATGCTCTTTATAATTTAGG+TGG | + | chr1.1:28575508-28575527 | MS.gene073921:CDS | 30.0% | |
| GCTAAAGATGGGAAAATTAA+AGG | + | chr1.1:28574773-28574792 | MS.gene073921:CDS | 30.0% | |
| TCTTGATCTTAATGTTGATG+AGG | + | chr1.1:28574559-28574578 | MS.gene073921:CDS | 30.0% | |
| TGAACATCAATTGTTTAAGG+AGG | + | chr1.1:28575006-28575025 | MS.gene073921:CDS | 30.0% | |
| ! | AGGCTTTAATTAGTTTCAAG+AGG | + | chr1.1:28575026-28575045 | MS.gene073921:CDS | 30.0% |
| ! | ATTTAAGGAGTATGGAAATG+AGG | + | chr1.1:28576596-28576615 | MS.gene073921:CDS | 30.0% |
| ! | GGCTTTAATTAGTTTCAAGA+GGG | + | chr1.1:28575027-28575046 | MS.gene073921:CDS | 30.0% |
| ! | TATGTTTGATGATCCAGATT+GGG | + | chr1.1:28576380-28576399 | MS.gene073921:CDS | 30.0% |
| ! | TTATGTTCTTGGAAGGTATA+AGG | + | chr1.1:28575105-28575124 | MS.gene073921:CDS | 30.0% |
| ! | TTATGTTTGATGATCCAGAT+TGG | + | chr1.1:28576379-28576398 | MS.gene073921:CDS | 30.0% |
| ! | TTTAAGGAGTATGGAAATGA+GGG | + | chr1.1:28576597-28576616 | MS.gene073921:CDS | 30.0% |
| !! | CTTTTGAGAACTTATGATGA+TGG | + | chr1.1:28574500-28574519 | MS.gene073921:CDS | 30.0% |
| !! | TAATGTGGAGCTTTTGAAAA+AGG | + | chr1.1:28575912-28575931 | MS.gene073921:CDS | 30.0% |
| !! | TGAATTTATTGATGGTGAGA+GGG | + | chr1.1:28574460-28574479 | MS.gene073921:CDS | 30.0% |
| !! | TTTAGAGCTTTGAAACTGTT+AGG | + | chr1.1:28575301-28575320 | MS.gene073921:CDS | 30.0% |
| !!! | TGATTATGCTGTTTTTGTGA+AGG | + | chr1.1:28574895-28574914 | MS.gene073921:CDS | 30.0% |
| AAAGAAGAACAAACCCAATG+GGG | + | chr1.1:28575750-28575769 | MS.gene073921:CDS | 35.0% | |
| AACCTTGGTATTTCATTGGA+AGG | + | chr1.1:28575214-28575233 | MS.gene073921:CDS | 35.0% | |
| AAGTTGAAGCAAGCTAAAGA+TGG | + | chr1.1:28574761-28574780 | MS.gene073921:CDS | 35.0% | |
| AATTGCAACCTGTTGATGTT+AGG | + | chr1.1:28575056-28575075 | MS.gene073921:CDS | 35.0% | |
| AGTTGAAGCAAGCTAAAGAT+GGG | + | chr1.1:28574762-28574781 | MS.gene073921:CDS | 35.0% | |
| ATAATACCAAAACCCCAATC+TGG | - | chr1.1:28576396-28576415 | None:intergenic | 35.0% | |
| ATCACCAACTGTCTTAAACT+TGG | - | chr1.1:28575815-28575834 | None:intergenic | 35.0% | |
| CAGATACATCCAGTTGTTAA+GGG | + | chr1.1:28576266-28576285 | MS.gene073921:CDS | 35.0% | |
| CGAAGAATTTCTTCCAAGTT+CGG | - | chr1.1:28576006-28576025 | None:intergenic | 35.0% | |
| CGTTAACCTTGGTATTTCAT+TGG | + | chr1.1:28575210-28575229 | MS.gene073921:CDS | 35.0% | |
| GAGTACAGATTTAAGGAGTA+TGG | + | chr1.1:28576588-28576607 | MS.gene073921:CDS | 35.0% | |
| GAGTGCTTGTGAGTATTATA+GGG | + | chr1.1:28575252-28575271 | MS.gene073921:CDS | 35.0% | |
| GATGGTTCAACTATGACAAA+TGG | - | chr1.1:28575793-28575812 | None:intergenic | 35.0% | |
| GCAAGTACACTTATCTTTCA+TGG | - | chr1.1:28576628-28576647 | None:intergenic | 35.0% | |
| TCAAACACAATACCGTGATT+CGG | - | chr1.1:28574692-28574711 | None:intergenic | 35.0% | |
| TCTTCCTGCTTAAATGTAGA+AGG | - | chr1.1:28576570-28576589 | None:intergenic | 35.0% | |
| TGAGTGCTTGTGAGTATTAT+AGG | + | chr1.1:28575251-28575270 | MS.gene073921:CDS | 35.0% | |
| TTCGGATAAGAGAGTAGTTT+GGG | + | chr1.1:28574859-28574878 | MS.gene073921:CDS | 35.0% | |
| TTTCGGATAAGAGAGTAGTT+TGG | + | chr1.1:28574858-28574877 | MS.gene073921:CDS | 35.0% | |
| TTTGATGCTTATTCTGATGC+TGG | + | chr1.1:28574803-28574822 | MS.gene073921:CDS | 35.0% | |
| ! | AGAAGCCAAAAAAGCTTTGA+AGG | + | chr1.1:28575660-28575679 | MS.gene073921:CDS | 35.0% |
| ! | ATGTTTGATGATCCAGATTG+GGG | + | chr1.1:28576381-28576400 | MS.gene073921:CDS | 35.0% |
| ! | TCAAGAGAAGAAGCTTTTGA+TGG | + | chr1.1:28574956-28574975 | MS.gene073921:CDS | 35.0% |
| ! | TGAGAGGATTCTTTCTGTTT+TGG | + | chr1.1:28576083-28576102 | MS.gene073921:CDS | 35.0% |
| ! | TGAGATGTATACGAGAGTTT+TGG | + | chr1.1:28575567-28575586 | MS.gene073921:CDS | 35.0% |
| ! | TGATCTTAATGTTGATGAGG+CGG | + | chr1.1:28574562-28574581 | MS.gene073921:CDS | 35.0% |
| ! | TTTGATGGACATATGGCAAT+TGG | + | chr1.1:28574971-28574990 | MS.gene073921:CDS | 35.0% |
| !! | AAGGCTATTGATTTGAAACC+GGG | + | chr1.1:28575478-28575497 | MS.gene073921:CDS | 35.0% |
| !! | AGAAGCTTTTGATGGACATA+TGG | + | chr1.1:28574964-28574983 | MS.gene073921:CDS | 35.0% |
| !! | AGAGGCTATTTTCATGAAAC+CGG | + | chr1.1:28575375-28575394 | MS.gene073921:CDS | 35.0% |
| !! | CTGAATTTATTGATGGTGAG+AGG | + | chr1.1:28574459-28574478 | MS.gene073921:CDS | 35.0% |
| !! | CTTGCTTTAACTTGCAATCA+CGG | + | chr1.1:28576643-28576662 | MS.gene073921:CDS | 35.0% |
| !! | CTTTCTGTTTTGGATGAAAG+TGG | + | chr1.1:28576093-28576112 | MS.gene073921:CDS | 35.0% |
| !! | GAAGGCTATTGATTTGAAAC+CGG | + | chr1.1:28575477-28575496 | MS.gene073921:CDS | 35.0% |
| !! | GAATTTATTGATGGTGAGAG+GGG | + | chr1.1:28574461-28574480 | MS.gene073921:CDS | 35.0% |
| !! | TAAAGAGCATCAATATGACC+CGG | - | chr1.1:28575499-28575518 | None:intergenic | 35.0% |
| !! | TTCAAAGCTCTAAAATGCGT+AGG | - | chr1.1:28575295-28575314 | None:intergenic | 35.0% |
| !!! | TGCTTCCTTCAAAGCTTTTT+TGG | - | chr1.1:28575668-28575687 | None:intergenic | 35.0% |
| AAATGAGGCCTAACATCAAC+AGG | - | chr1.1:28575067-28575086 | None:intergenic | 40.0% | |
| AATCAACGCAATTCTCGATG+AGG | + | chr1.1:28574421-28574440 | MS.gene073921:CDS | 40.0% | |
| AATTCGACGCGAATCATGAT+GGG | + | chr1.1:28574327-28574346 | MS.gene073921:CDS | 40.0% | |
| ACCTTAGTGAAGCTTGAAAC+AGG | + | chr1.1:28576420-28576439 | MS.gene073921:CDS | 40.0% | |
| AGTGCCTTCTACATTTAAGC+AGG | + | chr1.1:28576563-28576582 | MS.gene073921:CDS | 40.0% | |
| ATCATGATTCGCGTCGAATT+GGG | - | chr1.1:28574327-28574346 | None:intergenic | 40.0% | |
| ATGACAAATGGCGATTCTTC+CGG | - | chr1.1:28575781-28575800 | None:intergenic | 40.0% | |
| ATGCTTATTCTGATGCTGGT+TGG | + | chr1.1:28574807-28574826 | MS.gene073921:CDS | 40.0% | |
| CAATGTGCATCAGCATAATC+CGG | - | chr1.1:28575397-28575416 | None:intergenic | 40.0% | |
| CACCTTCCAATGAAATACCA+AGG | - | chr1.1:28575219-28575238 | None:intergenic | 40.0% | |
| CATAAACAGCCCTTAACAAC+TGG | - | chr1.1:28576278-28576297 | None:intergenic | 40.0% | |
| CATCAATTCGCTAACACCTT+GGG | - | chr1.1:28576307-28576326 | None:intergenic | 40.0% | |
| CCAACTGTCTTAAACTTGGA+TGG | - | chr1.1:28575811-28575830 | None:intergenic | 40.0% | |
| CCAAGGTTAACGTAAATCTG+TGG | - | chr1.1:28575202-28575221 | None:intergenic | 40.0% | |
| CCACAGATTTACGTTAACCT+TGG | + | chr1.1:28575199-28575218 | MS.gene073921:CDS | 40.0% | |
| CCAGATACATCCAGTTGTTA+AGG | + | chr1.1:28576265-28576284 | MS.gene073921:CDS | 40.0% | |
| CCTTAACAACTGGATGTATC+TGG | - | chr1.1:28576268-28576287 | None:intergenic | 40.0% | |
| CTGTGAAAGCCATAAATGAG+AGG | + | chr1.1:28576067-28576086 | MS.gene073921:CDS | 40.0% | |
| GATTGTATATGGACTTGGGT+AGG | + | chr1.1:28575530-28575549 | MS.gene073921:CDS | 40.0% | |
| GGAATATAAGGCTGCTGTTA+AGG | + | chr1.1:28575345-28575364 | MS.gene073921:CDS | 40.0% | |
| GGGTTTGAATAGGGAAGAAA+TGG | + | chr1.1:28574349-28574368 | MS.gene073921:CDS | 40.0% | |
| GGTATTTCATTGGAAGGTGA+AGG | + | chr1.1:28575220-28575239 | MS.gene073921:CDS | 40.0% | |
| GTATTGTGTTTGATGAGACG+TGG | + | chr1.1:28574699-28574718 | MS.gene073921:CDS | 40.0% | |
| GTTTCAAGCTTCACTAAGGT+AGG | - | chr1.1:28576420-28576439 | None:intergenic | 40.0% | |
| TAAAGCGCGAACCGATAATA+GGG | - | chr1.1:28576491-28576510 | None:intergenic | 40.0% | |
| TCCTGTTTCAAGCTTCACTA+AGG | - | chr1.1:28576424-28576443 | None:intergenic | 40.0% | |
| TGCTTGTGAGTATTATAGGG+AGG | + | chr1.1:28575255-28575274 | MS.gene073921:CDS | 40.0% | |
| TTAAAGCGCGAACCGATAAT+AGG | - | chr1.1:28576492-28576511 | None:intergenic | 40.0% | |
| TTATCCGAAATCTCAGTCGA+AGG | - | chr1.1:28574848-28574867 | None:intergenic | 40.0% | |
| TTCATTGGAAGGTGAAGGTA+TGG | + | chr1.1:28575225-28575244 | MS.gene073921:CDS | 40.0% | |
| TTTCTTCCAAGTTCGGTTTC+CGG | - | chr1.1:28575999-28576018 | None:intergenic | 40.0% | |
| ! | AGAGTAGTTTGGGATGAATC+AGG | + | chr1.1:28574869-28574888 | MS.gene073921:CDS | 40.0% |
| ! | AGCGAAGGAAGAGTTTTTGT+TGG | + | chr1.1:28575129-28575148 | MS.gene073921:CDS | 40.0% |
| ! | ATCATGATGGGGGTTTGAAT+AGG | + | chr1.1:28574339-28574358 | MS.gene073921:CDS | 40.0% |
| ! | ATCTTAATGTTGATGAGGCG+GGG | + | chr1.1:28574564-28574583 | MS.gene073921:CDS | 40.0% |
| ! | CCATCCAAGTTTAAGACAGT+TGG | + | chr1.1:28575808-28575827 | MS.gene073921:CDS | 40.0% |
| ! | CTGTTAGGTAGTGCTCTTTT+TGG | + | chr1.1:28575316-28575335 | MS.gene073921:CDS | 40.0% |
| ! | GAGTAGTTTGGGATGAATCA+GGG | + | chr1.1:28574870-28574889 | MS.gene073921:CDS | 40.0% |
| ! | GATCTTAATGTTGATGAGGC+GGG | + | chr1.1:28574563-28574582 | MS.gene073921:CDS | 40.0% |
| ! | GCAGGAAGAGTACAGATTTA+AGG | + | chr1.1:28576581-28576600 | MS.gene073921:CDS | 40.0% |
| ! | TAGGTTGAGTCGTTGTAATG+TGG | + | chr1.1:28575897-28575916 | MS.gene073921:CDS | 40.0% |
| ! | TCATGATGGGGGTTTGAATA+GGG | + | chr1.1:28574340-28574359 | MS.gene073921:CDS | 40.0% |
| ! | TTGGTGATAAGACTACTGTG+AGG | + | chr1.1:28575827-28575846 | MS.gene073921:CDS | 40.0% |
| ! | TTTTGGCGTAGGGGAATATA+AGG | + | chr1.1:28575333-28575352 | MS.gene073921:CDS | 40.0% |
| !! | AGAACTTATGATGATGGTGC+TGG | + | chr1.1:28574506-28574525 | MS.gene073921:CDS | 40.0% |
| !! | AGGTGGATTGTATATGGACT+TGG | + | chr1.1:28575525-28575544 | MS.gene073921:CDS | 40.0% |
| !! | CAATTACCGGCTCTAAAATG+AGG | - | chr1.1:28575082-28575101 | None:intergenic | 40.0% |
| !! | GGTGGATTGTATATGGACTT+GGG | + | chr1.1:28575526-28575545 | MS.gene073921:CDS | 40.0% |
| !! | GTTTTGGATGAAAGTGGTTC+AGG | + | chr1.1:28576099-28576118 | MS.gene073921:CDS | 40.0% |
| !! | TATTATCGGTTCGCGCTTTA+AGG | + | chr1.1:28576491-28576510 | MS.gene073921:CDS | 40.0% |
| !!! | GCTGTTTTTGTGAAGGAAGT+GGG | + | chr1.1:28574902-28574921 | MS.gene073921:CDS | 40.0% |
| !!! | TGCTGTTTTTGTGAAGGAAG+TGG | + | chr1.1:28574901-28574920 | MS.gene073921:CDS | 40.0% |
| AATGAGCGAACATGATGTGC+CGG | + | chr1.1:28575936-28575955 | MS.gene073921:CDS | 45.0% | |
| AATTCGCTAACACCTTGGGA+AGG | - | chr1.1:28576303-28576322 | None:intergenic | 45.0% | |
| ACAGGAGATAGAAACCGACA+TGG | + | chr1.1:28576438-28576457 | MS.gene073921:CDS | 45.0% | |
| AGGTGTTAGCGAATTGATGG+AGG | + | chr1.1:28576308-28576327 | MS.gene073921:CDS | 45.0% | |
| ATTAGCACCGTCTTCGTTCA+TGG | - | chr1.1:28576226-28576245 | None:intergenic | 45.0% | |
| ATTCGACGCGAATCATGATG+GGG | + | chr1.1:28574328-28574347 | MS.gene073921:CDS | 45.0% | |
| ATTCTTGCTCCCATTTGTGG+TGG | + | chr1.1:28576150-28576169 | MS.gene073921:CDS | 45.0% | |
| CAATTCGACGCGAATCATGA+TGG | + | chr1.1:28574326-28574345 | MS.gene073921:CDS | 45.0% | |
| CATCATGATTCGCGTCGAAT+TGG | - | chr1.1:28574328-28574347 | None:intergenic | 45.0% | |
| CATCGCTGAATTTCACCCTA+GGG | - | chr1.1:28574397-28574416 | None:intergenic | 45.0% | |
| CCATCAATTCGCTAACACCT+TGG | - | chr1.1:28576308-28576327 | None:intergenic | 45.0% | |
| GCTATTCTTGCTCCCATTTG+TGG | + | chr1.1:28576147-28576166 | MS.gene073921:CDS | 45.0% | |
| GCTGTTTATGTTCCTTCCCA+AGG | + | chr1.1:28576288-28576307 | MS.gene073921:CDS | 45.0% | |
| GGTTCAGGCAGATTAGATCT+TGG | + | chr1.1:28576114-28576133 | MS.gene073921:CDS | 45.0% | |
| TATACATCTCAGAAGCCCTC+TGG | - | chr1.1:28575558-28575577 | None:intergenic | 45.0% | |
| TCATCGCTGAATTTCACCCT+AGG | - | chr1.1:28574398-28574417 | None:intergenic | 45.0% | |
| TGAGGCTGGTGGAAATCAAT+GGG | + | chr1.1:28575165-28575184 | MS.gene073921:CDS | 45.0% | |
| TGATAAGACTACTGTGAGGC+AGG | + | chr1.1:28575831-28575850 | MS.gene073921:CDS | 45.0% | |
| TGCTGATGCACATTGTGATC+TGG | + | chr1.1:28575402-28575421 | MS.gene073921:CDS | 45.0% | |
| TGGAGACGTAGACACTTCAA+TGG | + | chr1.1:28576335-28576354 | MS.gene073921:CDS | 45.0% | |
| TGTAACCAATGCTACAGCGA+AGG | + | chr1.1:28576537-28576556 | MS.gene073921:CDS | 45.0% | |
| TTAGCACCGTCTTCGTTCAT+GGG | - | chr1.1:28576225-28576244 | None:intergenic | 45.0% | |
| ! | ATCCTTTTACGTCTCTCTGG+AGG | - | chr1.1:28576177-28576196 | None:intergenic | 45.0% |
| ! | CCAAGGTGTTAGCGAATTGA+TGG | + | chr1.1:28576305-28576324 | MS.gene073921:CDS | 45.0% |
| ! | CTGAAGCCAGACACTTTTCA+AGG | + | chr1.1:28576042-28576061 | MS.gene073921:CDS | 45.0% |
| ! | CTTTTCCTTCGCTGTAGCAT+TGG | - | chr1.1:28576545-28576564 | None:intergenic | 45.0% |
| ! | GAGAGGGGTTTGACTTATGA+GGG | + | chr1.1:28574476-28574495 | MS.gene073921:CDS | 45.0% |
| ! | GATGATCCAGATTGGGGTTT+TGG | + | chr1.1:28576387-28576406 | MS.gene073921:CDS | 45.0% |
| ! | GATTGTTGATGAGAGGATGG+CGG | + | chr1.1:28574622-28574641 | MS.gene073921:CDS | 45.0% |
| ! | GCAAATCAGAGCACTTCAGA+AGG | + | chr1.1:28575870-28575889 | MS.gene073921:CDS | 45.0% |
| ! | GTCGATTGTTGATGAGAGGA+TGG | + | chr1.1:28574619-28574638 | MS.gene073921:CDS | 45.0% |
| ! | GTTTTTGTGAAGGAAGTGGG+TGG | + | chr1.1:28574905-28574924 | MS.gene073921:CDS | 45.0% |
| ! | TGAGAGGGGTTTGACTTATG+AGG | + | chr1.1:28574475-28574494 | MS.gene073921:CDS | 45.0% |
| ! | TGCACATTGTGATCTGGCTT+CGG | + | chr1.1:28575408-28575427 | MS.gene073921:CDS | 45.0% |
| ! | TGGAAGGTATAAGGAAGCGA+AGG | + | chr1.1:28575114-28575133 | MS.gene073921:CDS | 45.0% |
| !! | ACAGCTCCTTGAAAAGTGTC+TGG | - | chr1.1:28576051-28576070 | None:intergenic | 45.0% |
| !! | ATGGTGCTGGTGATGTTGAT+AGG | + | chr1.1:28574519-28574538 | MS.gene073921:CDS | 45.0% |
| !! | CACACATGGTTTTGCCATGT+CGG | - | chr1.1:28576455-28576474 | None:intergenic | 45.0% |
| !! | GGTTTCCGGATGGATTTTTC+CGG | - | chr1.1:28575985-28576004 | None:intergenic | 45.0% |
| !! | GTAGTGCTCTTTTTGGCGTA+GGG | + | chr1.1:28575323-28575342 | MS.gene073921:CDS | 45.0% |
| !! | TAGTGCTCTTTTTGGCGTAG+GGG | + | chr1.1:28575324-28575343 | MS.gene073921:CDS | 45.0% |
| !! | TGGTGCTGGTGATGTTGATA+GGG | + | chr1.1:28574520-28574539 | MS.gene073921:CDS | 45.0% |
| !! | TGTTGGTGCTGTAAACCCTA+GGG | + | chr1.1:28574379-28574398 | MS.gene073921:CDS | 45.0% |
| !! | TTGTTGGTGCTGTAAACCCT+AGG | + | chr1.1:28574378-28574397 | MS.gene073921:CDS | 45.0% |
| !!! | ATACGAGAGTTTTGGCTGTG+TGG | + | chr1.1:28575575-28575594 | MS.gene073921:CDS | 45.0% |
| !!! | GTTAGGCCTCATTTTAGAGC+CGG | + | chr1.1:28575073-28575092 | MS.gene073921:CDS | 45.0% |
| ACGCCACAACAGTGCATCAA+AGG | - | chr1.1:28576202-28576221 | None:intergenic | 50.0% | |
| AGCGAATTGATGGAGGTTCG+TGG | + | chr1.1:28576315-28576334 | MS.gene073921:CDS | 50.0% | |
| ATCCATCCGGAAACCGAACT+TGG | + | chr1.1:28575990-28576009 | MS.gene073921:CDS | 50.0% | |
| ATGCTATGCGTGAGGATGAG+AGG | + | chr1.1:28575437-28575456 | MS.gene073921:CDS | 50.0% | |
| CAAACCCAATGGGGATACTC+CGG | + | chr1.1:28575759-28575778 | MS.gene073921:CDS | 50.0% | |
| CTGAGGCTGGTGGAAATCAA+TGG | + | chr1.1:28575164-28575183 | MS.gene073921:CDS | 50.0% | |
| GAAGAAATGGCGTCGCTTGT+TGG | + | chr1.1:28574362-28574381 | MS.gene073921:CDS | 50.0% | |
| GAGCACTTCAGAAGGTTGCT+AGG | + | chr1.1:28575878-28575897 | MS.gene073921:CDS | 50.0% | |
| GCGAACCGATAATAGGGTAG+CGG | - | chr1.1:28576485-28576504 | None:intergenic | 50.0% | |
| GTCCTCCAGAGAGACGTAAA+AGG | + | chr1.1:28576172-28576191 | MS.gene073921:CDS | 50.0% | |
| TCGCCTTTGATGCACTGTTG+TGG | + | chr1.1:28576196-28576215 | MS.gene073921:CDS | 50.0% | |
| TCTGGAGGACCACCACAAAT+GGG | - | chr1.1:28576162-28576181 | None:intergenic | 50.0% | |
| TGCTATGCGTGAGGATGAGA+GGG | + | chr1.1:28575438-28575457 | MS.gene073921:CDS | 50.0% | |
| TTCCAAGTTCGGTTTCCGGA+TGG | - | chr1.1:28575995-28576014 | None:intergenic | 50.0% | |
| TTCGACGCGAATCATGATGG+GGG | + | chr1.1:28574329-28574348 | MS.gene073921:CDS | 50.0% | |
| TTGAGTCGCAGAAGAAGCAG+CGG | + | chr1.1:28574645-28574664 | MS.gene073921:CDS | 50.0% | |
| ! | AACAAGGCTGTGTCGTTGCT+GGG | + | chr1.1:28575622-28575641 | MS.gene073921:CDS | 50.0% |
| ! | CGTCGTCGATTGTTGATGAG+AGG | + | chr1.1:28574615-28574634 | MS.gene073921:CDS | 50.0% |
| ! | GCGATCCTTTTACGTCTCTC+TGG | - | chr1.1:28576180-28576199 | None:intergenic | 50.0% |
| ! | GGCGATTGAGGTGTTTCAGA+AGG | + | chr1.1:28575459-28575478 | MS.gene073921:CDS | 50.0% |
| ! | GTGTGCCGCTACCCTATTAT+CGG | + | chr1.1:28576477-28576496 | MS.gene073921:CDS | 50.0% |
| ! | TCTTCCGGAGTATCCCCATT+GGG | - | chr1.1:28575766-28575785 | None:intergenic | 50.0% |
| ! | TGCTCTGATTTGCAGAGCAC+TGG | - | chr1.1:28575863-28575882 | None:intergenic | 50.0% |
| ! | TGCTGTTAAGGCGCTTGAAG+AGG | + | chr1.1:28575357-28575376 | MS.gene073921:CDS | 50.0% |
| ! | TTCTTCCGGAGTATCCCCAT+TGG | - | chr1.1:28575767-28575786 | None:intergenic | 50.0% |
| !! | GAGTGCCGGAAAAATCCATC+CGG | + | chr1.1:28575977-28575996 | MS.gene073921:CDS | 50.0% |
| !! | GATGGATTTTTCCGGCACTC+CGG | - | chr1.1:28575977-28575996 | None:intergenic | 50.0% |
| !! | GGTAGTGCTCTTTTTGGCGT+AGG | + | chr1.1:28575322-28575341 | MS.gene073921:CDS | 50.0% |
| AACTGCGCCCGCCAATGATT+CGG | - | chr1.1:28575601-28575620 | None:intergenic | 55.0% | |
| CCGGTACCAGAATACGACAC+CGG | - | chr1.1:28575958-28575977 | None:intergenic | 55.0% | |
| CTGTGTGGCCGAATCATTGG+CGG | + | chr1.1:28575590-28575609 | MS.gene073921:CDS | 55.0% | |
| GGACTTGGGTAGGTTCCAGA+GGG | + | chr1.1:28575540-28575559 | MS.gene073921:CDS | 55.0% | |
| GGCTTTGCATGCTATGCGTG+AGG | + | chr1.1:28575429-28575448 | MS.gene073921:CDS | 55.0% | |
| GGGGCCTTCGACTGAGATTT+CGG | + | chr1.1:28574841-28574860 | MS.gene073921:CDS | 55.0% | |
| GTTGGCACTTGAAGCTGCTG+AGG | + | chr1.1:28575147-28575166 | MS.gene073921:CDS | 55.0% | |
| TGAGGATGAGAGGGCGATTG+AGG | + | chr1.1:28575447-28575466 | MS.gene073921:CDS | 55.0% | |
| TGGACTTGGGTAGGTTCCAG+AGG | + | chr1.1:28575539-28575558 | MS.gene073921:CDS | 55.0% | |
| TGGCGTCCCATGAACGAAGA+CGG | + | chr1.1:28576216-28576235 | MS.gene073921:CDS | 55.0% | |
| TGGCTGTGTGGCCGAATCAT+TGG | + | chr1.1:28575587-28575606 | MS.gene073921:CDS | 55.0% | |
| TGTGTGGCCGAATCATTGGC+GGG | + | chr1.1:28575591-28575610 | MS.gene073921:CDS | 55.0% | |
| ! | CTCTGGAGGACCACCACAAA+TGG | - | chr1.1:28576163-28576182 | None:intergenic | 55.0% |
| ! | GAACAAGGCTGTGTCGTTGC+TGG | + | chr1.1:28575621-28575640 | MS.gene073921:CDS | 55.0% |
| ! | GTATTCTGGTACCGGAGTGC+CGG | + | chr1.1:28575963-28575982 | MS.gene073921:CDS | 55.0% |
| !! | AAGAGGCACCAGATCGGAGA+AGG | + | chr1.1:28574286-28574305 | MS.gene073921:CDS | 55.0% |
| !! | CCGGTGTCGTATTCTGGTAC+CGG | + | chr1.1:28575955-28575974 | MS.gene073921:CDS | 55.0% |
| !! | CTGGTTGGTCTCGCGAATTG+GGG | + | chr1.1:28574822-28574841 | MS.gene073921:CDS | 55.0% |
| !! | GATGTGCCGGTGTCGTATTC+TGG | + | chr1.1:28575949-28575968 | MS.gene073921:CDS | 55.0% |
| !! | GCTGGTTGGTCTCGCGAATT+GGG | + | chr1.1:28574821-28574840 | MS.gene073921:CDS | 55.0% |
| !! | TGCTGGTTGGTCTCGCGAAT+TGG | + | chr1.1:28574820-28574839 | MS.gene073921:CDS | 55.0% |
| CTTGAAGCTGCTGAGGCTGG+TGG | + | chr1.1:28575154-28575173 | MS.gene073921:CDS | 60.0% | |
| GACGACGAAGCCTCCGAATC+CGG | - | chr1.1:28574602-28574621 | None:intergenic | 60.0% | |
| GCACTTGAAGCTGCTGAGGC+TGG | + | chr1.1:28575151-28575170 | MS.gene073921:CDS | 60.0% | |
| GTAGCGGCACACTGCACACA+TGG | - | chr1.1:28576469-28576488 | None:intergenic | 60.0% | |
| TCGTCGCACCTTCTCCGATC+TGG | - | chr1.1:28574297-28574316 | None:intergenic | 60.0% | |
| TGATGAGGCGGGGAAGACTC+CGG | + | chr1.1:28574574-28574593 | MS.gene073921:CDS | 60.0% | |
| TGGGCAGTGTCGCCGAATCA+CGG | + | chr1.1:28574677-28574696 | MS.gene073921:CDS | 60.0% | |
| ! | TTGGCGGGCGCAGTTGAACA+AGG | + | chr1.1:28575606-28575625 | MS.gene073921:CDS | 60.0% |
| !! | GGCGACAAGAGGCACCAGAT+CGG | + | chr1.1:28574280-28574299 | MS.gene073921:CDS | 60.0% |
| AGAAGCAGCGGACAGCTGCG+TGG | + | chr1.1:28574657-28574676 | MS.gene073921:CDS | 65.0% | |
| GAAGCAGCGGACAGCTGCGT+GGG | + | chr1.1:28574658-28574677 | MS.gene073921:CDS | 65.0% | |
| ! | GAAGACTCCGGCGCCGGATT+CGG | + | chr1.1:28574586-28574605 | MS.gene073921:CDS | 65.0% |
| ! | GCTGTGTCGTTGCTGGGAGC+TGG | + | chr1.1:28575628-28575647 | MS.gene073921:CDS | 65.0% |
| GAAGCCTCCGAATCCGGCGC+CGG | - | chr1.1:28574596-28574615 | None:intergenic | 70.0% | |
| ! | GACTCCGGCGCCGGATTCGG+AGG | + | chr1.1:28574589-28574608 | MS.gene073921:CDS | 75.0% |
| ! | GGCGGGGAAGACTCCGGCGC+CGG | + | chr1.1:28574580-28574599 | MS.gene073921:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 28574278 | 28576677 | 28574278 | ID=MS.gene073921 |
| chr1.1 | mRNA | 28574278 | 28576677 | 28574278 | ID=MS.gene073921.t1;Parent=MS.gene073921 |
| chr1.1 | exon | 28574278 | 28576677 | 28574278 | ID=MS.gene073921.t1.exon1;Parent=MS.gene073921.t1 |
| chr1.1 | CDS | 28574278 | 28576677 | 28574278 | ID=cds.MS.gene073921.t1;Parent=MS.gene073921.t1 |
| Gene Sequence |
| Protein sequence |
