Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074024.t1 | RHN55325.1 | 98.4 | 182 | 3 | 0 | 1 | 182 | 58 | 239 | 5.30E-97 | 363.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074024.t1 | Q9S784 | 62.0 | 184 | 56 | 4 | 6 | 182 | 8 | 184 | 8.4e-59 | 228.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074024.t1 | G7KCI8 | 98.4 | 182 | 3 | 0 | 1 | 182 | 1 | 182 | 3.8e-97 | 363.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene017137 | MS.gene074024 | PPI |
| MS.gene062344 | MS.gene074024 | PPI |
| MS.gene045787 | MS.gene074024 | PPI |
| MS.gene030064 | MS.gene074024 | PPI |
| MS.gene81030 | MS.gene074024 | PPI |
| MS.gene72395 | MS.gene074024 | PPI |
| MS.gene72394 | MS.gene074024 | PPI |
| MS.gene038370 | MS.gene074024 | PPI |
| MS.gene83241 | MS.gene074024 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074024.t1 | MTR_5g039530 | 98.352 | 182 | 3 | 0 | 1 | 182 | 1 | 182 | 1.13e-133 | 371 |
| MS.gene074024.t1 | MTR_4g108350 | 60.920 | 174 | 56 | 3 | 8 | 180 | 11 | 173 | 1.75e-74 | 221 |
| MS.gene074024.t1 | MTR_4g108350 | 57.471 | 174 | 53 | 4 | 8 | 180 | 11 | 164 | 5.18e-66 | 199 |
| MS.gene074024.t1 | MTR_3g452470 | 43.396 | 159 | 85 | 1 | 8 | 166 | 3 | 156 | 1.14e-40 | 135 |
| MS.gene074024.t1 | MTR_5g091800 | 43.373 | 166 | 76 | 2 | 7 | 166 | 2 | 155 | 8.04e-40 | 133 |
| MS.gene074024.t1 | MTR_8g096670 | 47.619 | 105 | 52 | 1 | 9 | 110 | 4 | 108 | 2.06e-29 | 105 |
| MS.gene074024.t1 | MTR_8g096670 | 52.174 | 92 | 41 | 1 | 22 | 110 | 7 | 98 | 1.74e-28 | 102 |
| MS.gene074024.t1 | MTR_3g099010 | 50.526 | 95 | 47 | 0 | 9 | 103 | 4 | 98 | 2.12e-27 | 101 |
| MS.gene074024.t1 | MTR_4g093260 | 41.722 | 151 | 78 | 3 | 8 | 158 | 6 | 146 | 1.30e-26 | 105 |
| MS.gene074024.t1 | MTR_4g093510 | 41.429 | 140 | 72 | 3 | 19 | 158 | 17 | 146 | 7.51e-26 | 103 |
| MS.gene074024.t1 | MTR_4g093270 | 38.889 | 144 | 78 | 3 | 19 | 162 | 14 | 147 | 1.94e-25 | 100 |
| MS.gene074024.t1 | MTR_4g093280 | 35.429 | 175 | 98 | 4 | 8 | 179 | 6 | 168 | 1.47e-23 | 96.7 |
| MS.gene074024.t1 | MTR_4g093260 | 41.221 | 131 | 67 | 3 | 32 | 162 | 21 | 141 | 1.73e-23 | 97.1 |
| MS.gene074024.t1 | MTR_5g019720 | 34.066 | 91 | 60 | 0 | 20 | 110 | 32 | 122 | 1.74e-12 | 63.2 |
| MS.gene074024.t1 | MTR_5g019720 | 34.483 | 87 | 57 | 0 | 24 | 110 | 36 | 122 | 3.99e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074024.t1 | AT1G69700 | 60.638 | 188 | 60 | 4 | 2 | 182 | 4 | 184 | 6.11e-79 | 233 |
| MS.gene074024.t1 | AT1G74520 | 55.556 | 171 | 66 | 2 | 1 | 170 | 1 | 162 | 1.11e-68 | 207 |
| MS.gene074024.t1 | AT1G74520 | 55.556 | 171 | 66 | 2 | 1 | 170 | 1 | 162 | 1.11e-68 | 207 |
| MS.gene074024.t1 | AT5G62490 | 44.809 | 183 | 84 | 4 | 1 | 182 | 1 | 167 | 4.61e-49 | 157 |
| MS.gene074024.t1 | AT2G42820 | 38.509 | 161 | 92 | 2 | 7 | 166 | 2 | 156 | 9.87e-37 | 125 |
| MS.gene074024.t1 | AT5G50720 | 56.471 | 85 | 37 | 0 | 19 | 103 | 14 | 98 | 1.87e-27 | 100 |
| MS.gene074024.t1 | AT4G24960 | 51.190 | 84 | 41 | 0 | 20 | 103 | 15 | 98 | 2.20e-25 | 95.5 |
| MS.gene074024.t1 | AT4G24960 | 51.282 | 78 | 38 | 0 | 26 | 103 | 2 | 79 | 1.24e-23 | 90.9 |
| MS.gene074024.t1 | AT4G24960 | 47.761 | 67 | 35 | 0 | 37 | 103 | 1 | 67 | 8.59e-18 | 75.1 |
| MS.gene074024.t1 | AT4G36720 | 28.571 | 112 | 79 | 1 | 20 | 130 | 40 | 151 | 5.58e-11 | 59.3 |
Find 34 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAACAATGGCTCACTTAT+TGG | 0.141168 | 5.1:-29791250 | MS.gene074024:CDS |
| TTGGTTCTTCCTCACTTTAA+TGG | 0.200883 | 5.1:-29789092 | MS.gene074024:CDS |
| GACAATATTCTTGGTTTCTA+TGG | 0.221356 | 5.1:+29791277 | None:intergenic |
| AACTTTGCATAAGGCCAAAT+TGG | 0.249813 | 5.1:+29789131 | None:intergenic |
| CTGCCAAACATGGGTGCTTC+TGG | 0.275435 | 5.1:-29791579 | None:intergenic |
| GAGAGGTACATGCAAGAAAA+TGG | 0.319550 | 5.1:-29788921 | MS.gene074024:CDS |
| CCAACAATGGCTCACTTATT+GGG | 0.324995 | 5.1:-29791249 | MS.gene074024:CDS |
| TTGGTCATCGACAATATTCT+TGG | 0.340163 | 5.1:+29791268 | None:intergenic |
| AACTTACACTTCAAGAACTT+TGG | 0.394572 | 5.1:+29791187 | None:intergenic |
| CAAAGTTGATACTGAGTTGT+TGG | 0.408295 | 5.1:-29789115 | MS.gene074024:CDS |
| GCGGCATTTGTGGTAATTGT+GGG | 0.420764 | 5.1:+29789024 | None:intergenic |
| CCCAATAAGTGAGCCATTGT+TGG | 0.422265 | 5.1:+29791249 | None:intergenic |
| CCTGGCATTAGCGGCATTTG+TGG | 0.422971 | 5.1:+29789014 | None:intergenic |
| AGCGGCATTTGTGGTAATTG+TGG | 0.440775 | 5.1:+29789023 | None:intergenic |
| TGCGAAGCTCCTGGCATTAG+CGG | 0.455447 | 5.1:+29789005 | None:intergenic |
| CTCAGTATCAACTTTGCATA+AGG | 0.465176 | 5.1:+29789122 | None:intergenic |
| GAATCTAAAGCAAGGAGGAA+TGG | 0.484072 | 5.1:-29788671 | MS.gene074024:CDS |
| CCACAAATGCCGCTAATGCC+AGG | 0.485831 | 5.1:-29789014 | MS.gene074024:CDS |
| CGCAAATGTGGTATGTTCCT+CGG | 0.493804 | 5.1:-29788986 | MS.gene074024:CDS |
| TGTCAGATATGCTTCAATCA+AGG | 0.516461 | 5.1:-29791300 | MS.gene074024:intron |
| TACCACATTTGCGAAGCTCC+TGG | 0.532456 | 5.1:+29788996 | None:intergenic |
| TGCCAGGAGCTTCGCAAATG+TGG | 0.549823 | 5.1:-29788998 | MS.gene074024:CDS |
| AATTGTGGGTTCATGTAGAA+TGG | 0.566744 | 5.1:+29789038 | None:intergenic |
| GTTGATACTGAGTTGTTGGT+TGG | 0.567156 | 5.1:-29789111 | MS.gene074024:CDS |
| TTACTGAATATGTTCTTCCG+AGG | 0.640747 | 5.1:+29788969 | None:intergenic |
| ATACTTACAAAGGATAAACA+AGG | 0.644880 | 5.1:+29791398 | None:intergenic |
| GGATAAACAAGGGTTACCAA+AGG | 0.666185 | 5.1:+29791409 | None:intergenic |
| CTGACAGAGAATCTAAAGCA+AGG | 0.668145 | 5.1:-29788679 | MS.gene074024:CDS |
| ATATTGTCGATGACCAACAA+TGG | 0.675465 | 5.1:-29791262 | MS.gene074024:CDS |
| TGTGCTGCTCCATTAAAGTG+AGG | 0.689754 | 5.1:+29789083 | None:intergenic |
| TACTTACAAAGGATAAACAA+GGG | 0.713530 | 5.1:+29791399 | None:intergenic |
| ATTTGAAAGACTCATCACAA+AGG | 0.722475 | 5.1:-29788889 | MS.gene074024:intron |
| ATGTTCTTAGTGCTGCAGAG+AGG | 0.731265 | 5.1:-29788938 | MS.gene074024:CDS |
| ACAGAGAATCTAAAGCAAGG+AGG | 0.733583 | 5.1:-29788676 | MS.gene074024:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTAGTAATTTAAACTT+CGG | + | chr5.1:29791393-29791412 | None:intergenic | 10.0% |
| !!! | TATAATGATATTTTTCAAAT+AGG | - | chr5.1:29789261-29789280 | MS.gene074024:intron | 10.0% |
| !!! | TTTTTAAAATAGAATTTTCA+AGG | - | chr5.1:29789468-29789487 | MS.gene074024:intron | 10.0% |
| !! | AAATTATAACATACTTACAA+AGG | + | chr5.1:29788819-29788838 | None:intergenic | 15.0% |
| !! | ATGAATTAAAAATGTGATAA+TGG | + | chr5.1:29790136-29790155 | None:intergenic | 15.0% |
| !! | ATTACTAAATTTGAAAAACT+AGG | - | chr5.1:29791401-29791420 | MS.gene074024:intron | 15.0% |
| !! | TGAATTAAAAATGTGATAAT+GGG | + | chr5.1:29790135-29790154 | None:intergenic | 15.0% |
| !!! | ATCAAATGATTTTATGATAT+TGG | + | chr5.1:29790010-29790029 | None:intergenic | 15.0% |
| !!! | ATTATCACATTTTTAATTCA+TGG | - | chr5.1:29790135-29790154 | MS.gene074024:intron | 15.0% |
| !! | AAAAAACTAATCATAACTGA+AGG | + | chr5.1:29789718-29789737 | None:intergenic | 20.0% |
| !! | AAATTGTTTACAACAATTGT+GGG | + | chr5.1:29789755-29789774 | None:intergenic | 20.0% |
| !! | TAAATTGTTTACAACAATTG+TGG | + | chr5.1:29789756-29789775 | None:intergenic | 20.0% |
| !!! | AAATGATTTTATGATATTGG+AGG | + | chr5.1:29790007-29790026 | None:intergenic | 20.0% |
| !!! | AAGTTTTTTATGACTAAATC+TGG | - | chr5.1:29789035-29789054 | MS.gene074024:CDS | 20.0% |
| !!! | ATTTTCTTGTTTTTTTTTGC+AGG | - | chr5.1:29788772-29788791 | MS.gene074024:intron | 20.0% |
| !!! | CATATCACCTAATTTTTTTT+TGG | - | chr5.1:29791346-29791365 | MS.gene074024:intron | 20.0% |
| !!! | CTGTTGTTTTTTTAGAAAAT+TGG | - | chr5.1:29791430-29791449 | MS.gene074024:intron | 20.0% |
| !!! | TAACGTAAAGTCTATTTTAT+GGG | - | chr5.1:29789133-29789152 | MS.gene074024:CDS | 20.0% |
| !!! | TGAGAGTTTTTTTGATTTAT+TGG | - | chr5.1:29788872-29788891 | MS.gene074024:intron | 20.0% |
| !!! | TTAACGTAAAGTCTATTTTA+TGG | - | chr5.1:29789132-29789151 | MS.gene074024:CDS | 20.0% |
| !!! | TTTTTCTTATAATAGAGACT+GGG | - | chr5.1:29789402-29789421 | MS.gene074024:intron | 20.0% |
| !!! | TTTTTTCTTATAATAGAGAC+TGG | - | chr5.1:29789401-29789420 | MS.gene074024:intron | 20.0% |
| ! | AAATCTTGAACTATGAAGTA+AGG | + | chr5.1:29790846-29790865 | None:intergenic | 25.0% |
| ! | AACTATTAAGGCTACTAATT+TGG | + | chr5.1:29789620-29789639 | None:intergenic | 25.0% |
| ! | ACATAATCACTCATTTAAAC+AGG | + | chr5.1:29789591-29789610 | None:intergenic | 25.0% |
| ! | ACATGTTAATGCAACTATTA+AGG | + | chr5.1:29789632-29789651 | None:intergenic | 25.0% |
| ! | ACTATTAAGGCTACTAATTT+GGG | + | chr5.1:29789619-29789638 | None:intergenic | 25.0% |
| ! | ATACTTACAAAGGATAAACA+AGG | + | chr5.1:29788809-29788828 | None:intergenic | 25.0% |
| ! | CTCTTCACCAAAAAAAAATT+AGG | + | chr5.1:29791356-29791375 | None:intergenic | 25.0% |
| ! | GCTATTTAACATAGATAGAT+AGG | + | chr5.1:29788710-29788729 | None:intergenic | 25.0% |
| ! | GGTTTATAGAAAAGTTAGAA+AGG | - | chr5.1:29789154-29789173 | MS.gene074024:intron | 25.0% |
| ! | TACTTACAAAGGATAAACAA+GGG | + | chr5.1:29788808-29788827 | None:intergenic | 25.0% |
| ! | TATCAACTTCAAAAAAGTCT+TGG | + | chr5.1:29791035-29791054 | None:intergenic | 25.0% |
| ! | TTATCCTTTAATTCTTCTCT+TGG | + | chr5.1:29789546-29789565 | None:intergenic | 25.0% |
| !! | ATATCATAGCATTGAAATCT+TGG | + | chr5.1:29790753-29790772 | None:intergenic | 25.0% |
| !! | CTCTTAATTGATTCAACTAA+AGG | - | chr5.1:29790515-29790534 | MS.gene074024:intron | 25.0% |
| !! | CTGAAGTAATTGCTAATTTT+TGG | + | chr5.1:29789327-29789346 | None:intergenic | 25.0% |
| !! | TATCATAGCATTGAAATCTT+GGG | + | chr5.1:29790752-29790771 | None:intergenic | 25.0% |
| !!! | AAGGTAATGTTTTTTCTCTT+TGG | + | chr5.1:29789982-29790001 | None:intergenic | 25.0% |
| !!! | AATTGCTAATTTTTGGTCAA+CGG | + | chr5.1:29789320-29789339 | None:intergenic | 25.0% |
| !!! | AGTTGATAATTGCAATTTTC+AGG | - | chr5.1:29791047-29791066 | MS.gene074024:intron | 25.0% |
| !!! | GTTTTGCTTTTGTCTTAAAA+GGG | - | chr5.1:29790405-29790424 | MS.gene074024:intron | 25.0% |
| AACTATGTGATCAAGTCATT+GGG | + | chr5.1:29790194-29790213 | None:intergenic | 30.0% | |
| AACTATGTTATCATGGAATC+AGG | + | chr5.1:29790291-29790310 | None:intergenic | 30.0% | |
| AACTTACACTTCAAGAACTT+TGG | + | chr5.1:29789020-29789039 | None:intergenic | 30.0% | |
| AGCCATTTGATTATGATATC+AGG | + | chr5.1:29790727-29790746 | None:intergenic | 30.0% | |
| ATAACAACAAAAAAGAGCAG+TGG | + | chr5.1:29790912-29790931 | None:intergenic | 30.0% | |
| ATGTATCTGATCTATACATC+AGG | + | chr5.1:29789352-29789371 | None:intergenic | 30.0% | |
| ATTTGAAAGACTCATCACAA+AGG | - | chr5.1:29791315-29791334 | MS.gene074024:intron | 30.0% | |
| GACAATATTCTTGGTTTCTA+TGG | + | chr5.1:29788930-29788949 | None:intergenic | 30.0% | |
| GCCATTTGATTATGATATCA+GGG | + | chr5.1:29790726-29790745 | None:intergenic | 30.0% | |
| GTACTTGAATGAATACGAAT+AGG | - | chr5.1:29789946-29789965 | MS.gene074024:intron | 30.0% | |
| GTTTGAAAAAGAATTGTTCC+AGG | - | chr5.1:29790473-29790492 | MS.gene074024:intron | 30.0% | |
| TAAACAAAAACACCAGTGAT+AGG | + | chr5.1:29789885-29789904 | None:intergenic | 30.0% | |
| TAACTATGTGATCAAGTCAT+TGG | + | chr5.1:29790195-29790214 | None:intergenic | 30.0% | |
| TCAACCAAGAGAAGAATTAA+AGG | - | chr5.1:29789539-29789558 | MS.gene074024:intron | 30.0% | |
| ! | AGCAAGAACATCAAAGTTTT+TGG | + | chr5.1:29788674-29788693 | None:intergenic | 30.0% |
| ! | GGAAAAAAGCTCTAGTAATT+TGG | - | chr5.1:29790426-29790445 | MS.gene074024:intron | 30.0% |
| ! | TTAACATGTCTAGTAGGTTT+TGG | - | chr5.1:29789643-29789662 | MS.gene074024:intron | 30.0% |
| ! | TTTTATGATATTGGAGGCAA+AGG | + | chr5.1:29790001-29790020 | None:intergenic | 30.0% |
| !! | AGTATTTGTACTAGTCTTCT+AGG | - | chr5.1:29789834-29789853 | MS.gene074024:intron | 30.0% |
| !! | ATTTGCGTGCTTTATTTAGT+GGG | - | chr5.1:29790951-29790970 | MS.gene074024:intron | 30.0% |
| !! | GGTTTTGCTTTTGTCTTAAA+AGG | - | chr5.1:29790404-29790423 | MS.gene074024:intron | 30.0% |
| !! | TAAGTTTTGACCAAGACAAA+AGG | + | chr5.1:29789294-29789313 | None:intergenic | 30.0% |
| AAAAAGAATTGTTCCAGGCA+GGG | - | chr5.1:29790478-29790497 | MS.gene074024:intron | 35.0% | |
| AACCATATGATCATGGTAAC+AGG | + | chr5.1:29790356-29790375 | None:intergenic | 35.0% | |
| AACTTTGCATAAGGCCAAAT+TGG | + | chr5.1:29791076-29791095 | None:intergenic | 35.0% | |
| AAGTGGTTGTACTCTACTAA+AGG | + | chr5.1:29789499-29789518 | None:intergenic | 35.0% | |
| AATTGTGGGTTCATGTAGAA+TGG | + | chr5.1:29791169-29791188 | None:intergenic | 35.0% | |
| ACTATGGTGAGATCACTATA+AGG | + | chr5.1:29790052-29790071 | None:intergenic | 35.0% | |
| ACTATGTGATCAAGTCATTG+GGG | + | chr5.1:29790193-29790212 | None:intergenic | 35.0% | |
| ATATTGTCGATGACCAACAA+TGG | - | chr5.1:29788942-29788961 | MS.gene074024:CDS | 35.0% | |
| ATCCTGTTACCATGATCATA+TGG | - | chr5.1:29790351-29790370 | MS.gene074024:intron | 35.0% | |
| ATGGCTAAACCATATGATCA+TGG | + | chr5.1:29790363-29790382 | None:intergenic | 35.0% | |
| ATGGGTGAACTATGTTATCA+TGG | + | chr5.1:29790298-29790317 | None:intergenic | 35.0% | |
| CCATGGAAATGACTACTTAT+AGG | - | chr5.1:29789913-29789932 | MS.gene074024:intron | 35.0% | |
| CCTATAAGTAGTCATTTCCA+TGG | + | chr5.1:29789916-29789935 | None:intergenic | 35.0% | |
| CGATTATGGAATTAGGTTCA+TGG | + | chr5.1:29790687-29790706 | None:intergenic | 35.0% | |
| CTCAGTATCAACTTTGCATA+AGG | + | chr5.1:29791085-29791104 | None:intergenic | 35.0% | |
| GCCCTGATATCATAATCAAA+TGG | - | chr5.1:29790722-29790741 | MS.gene074024:intron | 35.0% | |
| GGAAATGACTACTTATAGGT+TGG | - | chr5.1:29789917-29789936 | MS.gene074024:intron | 35.0% | |
| GTTGCATTAACATGTCTAGT+AGG | - | chr5.1:29789637-29789656 | MS.gene074024:intron | 35.0% | |
| TCACATAAAGAATCGCACTA+TGG | + | chr5.1:29790068-29790087 | None:intergenic | 35.0% | |
| TCACATCACAGTTTACCAAT+TGG | - | chr5.1:29790775-29790794 | MS.gene074024:intron | 35.0% | |
| TGATCAAGGTTTCAAAGTCA+TGG | + | chr5.1:29790654-29790673 | None:intergenic | 35.0% | |
| TGTCAGATATGCTTCAATCA+AGG | - | chr5.1:29788904-29788923 | MS.gene074024:CDS | 35.0% | |
| TTACTGAATATGTTCTTCCG+AGG | + | chr5.1:29791238-29791257 | None:intergenic | 35.0% | |
| TTGGTCATCGACAATATTCT+TGG | + | chr5.1:29788939-29788958 | None:intergenic | 35.0% | |
| ! | ACTACTTATAGGTTGGATTG+AGG | - | chr5.1:29789924-29789943 | MS.gene074024:intron | 35.0% |
| ! | ATCCATGTGAACATGGTTTT+AGG | + | chr5.1:29790161-29790180 | None:intergenic | 35.0% |
| ! | ATGGATTAACCATGTGATCA+GGG | + | chr5.1:29790635-29790654 | None:intergenic | 35.0% |
| ! | ATGGATTATCCATGTGAACA+TGG | + | chr5.1:29790168-29790187 | None:intergenic | 35.0% |
| ! | TGCAGGTTGAAAATATGAAG+TGG | + | chr5.1:29789516-29789535 | None:intergenic | 35.0% |
| ! | TTGGTTCTTCCTCACTTTAA+TGG | - | chr5.1:29791112-29791131 | MS.gene074024:intron | 35.0% |
| !! | ACTTTGAAACCTTGATCACA+TGG | - | chr5.1:29790656-29790675 | MS.gene074024:intron | 35.0% |
| !! | CAAAGTTGATACTGAGTTGT+TGG | - | chr5.1:29791089-29791108 | MS.gene074024:intron | 35.0% |
| !! | CAATTTTCAGGCTTCCAATT+TGG | - | chr5.1:29791059-29791078 | MS.gene074024:intron | 35.0% |
| !! | CTGGTGTTTTTGTTTAGAGT+TGG | - | chr5.1:29789889-29789908 | MS.gene074024:intron | 35.0% |
| !! | CTTTGAAACCTTGATCACAT+GGG | - | chr5.1:29790657-29790676 | MS.gene074024:intron | 35.0% |
| !! | GATTTGCGTGCTTTATTTAG+TGG | - | chr5.1:29790950-29790969 | MS.gene074024:intron | 35.0% |
| !! | TTGTACTAGTCTTCTAGGTT+GGG | - | chr5.1:29789839-29789858 | MS.gene074024:intron | 35.0% |
| !! | TTTGTACTAGTCTTCTAGGT+TGG | - | chr5.1:29789838-29789857 | MS.gene074024:intron | 35.0% |
| !! | TTTTGTTTAGAGTTGGACCA+TGG | - | chr5.1:29789896-29789915 | MS.gene074024:intron | 35.0% |
| !!! | AGGTTTTGGCTAGGATAATT+AGG | - | chr5.1:29789657-29789676 | MS.gene074024:intron | 35.0% |
| !!! | TGTTTTTTTTTGCAGGCCTT+TGG | - | chr5.1:29788779-29788798 | MS.gene074024:intron | 35.0% |
| ACCAACAATGGCTCACTTAT+TGG | - | chr5.1:29788954-29788973 | MS.gene074024:CDS | 40.0% | |
| ACCATGTGATCATAGCATTG+AGG | + | chr5.1:29790387-29790406 | None:intergenic | 40.0% | |
| ACCCATGTGATCATTGTGTT+AGG | + | chr5.1:29790567-29790586 | None:intergenic | 40.0% | |
| ACCCTAACACAATGATCACA+TGG | - | chr5.1:29790562-29790581 | MS.gene074024:intron | 40.0% | |
| AGCAGTGCGATTATGGAATT+AGG | + | chr5.1:29790694-29790713 | None:intergenic | 40.0% | |
| ATTATGCAATCTTGCTCCCT+TGG | + | chr5.1:29790102-29790121 | None:intergenic | 40.0% | |
| CCAACAATGGCTCACTTATT+GGG | - | chr5.1:29788955-29788974 | MS.gene074024:CDS | 40.0% | |
| CCCATGTGATCATTGTGTTA+GGG | + | chr5.1:29790566-29790585 | None:intergenic | 40.0% | |
| CCCTAACACAATGATCACAT+GGG | - | chr5.1:29790563-29790582 | MS.gene074024:intron | 40.0% | |
| CTAATCATAACTGAAGGTCG+TGG | + | chr5.1:29789712-29789731 | None:intergenic | 40.0% | |
| GAAAAAGAATTGTTCCAGGC+AGG | - | chr5.1:29790477-29790496 | MS.gene074024:intron | 40.0% | |
| GGATAAACAAGGGTTACCAA+AGG | + | chr5.1:29788798-29788817 | None:intergenic | 40.0% | |
| GTCTGCACATCAACAACAAT+AGG | + | chr5.1:29791506-29791525 | None:intergenic | 40.0% | |
| GTGGAACAATTGCAGAACAA+CGG | + | chr5.1:29789693-29789712 | None:intergenic | 40.0% | |
| GTTGATACTGAGTTGTTGGT+TGG | - | chr5.1:29791093-29791112 | MS.gene074024:intron | 40.0% | |
| TCCTCAATGCTATGATCACA+TGG | - | chr5.1:29790383-29790402 | MS.gene074024:intron | 40.0% | |
| TGATAGGACTTAACCCCATT+AGG | + | chr5.1:29789869-29789888 | None:intergenic | 40.0% | |
| TGATTGTGACTTCGTGTCAT+GGG | + | chr5.1:29790316-29790335 | None:intergenic | 40.0% | |
| TTATAATAGAGACTGGGCAG+AGG | - | chr5.1:29789408-29789427 | MS.gene074024:intron | 40.0% | |
| ! | ACAGAGAATCTAAAGCAAGG+AGG | - | chr5.1:29791528-29791547 | MS.gene074024:intron | 40.0% |
| ! | ATGGATTACCCATGTGATCA+AGG | + | chr5.1:29790668-29790687 | None:intergenic | 40.0% |
| ! | CATGGATTAACCATGTGATC+AGG | + | chr5.1:29790636-29790655 | None:intergenic | 40.0% |
| ! | CTGACAGAGAATCTAAAGCA+AGG | - | chr5.1:29791525-29791544 | MS.gene074024:intron | 40.0% |
| ! | GAATCTAAAGCAAGGAGGAA+TGG | - | chr5.1:29791533-29791552 | MS.gene074024:CDS | 40.0% |
| ! | GAGAGGTACATGCAAGAAAA+TGG | - | chr5.1:29791283-29791302 | MS.gene074024:CDS | 40.0% |
| ! | GTGATCATAGCATTGAGGAA+TGG | + | chr5.1:29790382-29790401 | None:intergenic | 40.0% |
| ! | TTGACCAAGACAAAAGGCAT+TGG | + | chr5.1:29789288-29789307 | None:intergenic | 40.0% |
| !! | ATGTGATCTGACTTGTTCCA+AGG | - | chr5.1:29790082-29790101 | MS.gene074024:intron | 40.0% |
| !! | TGACCAAGACAAAAGGCATT+GGG | + | chr5.1:29789287-29789306 | None:intergenic | 40.0% |
| !! | TGTGATCTGACTTGTTCCAA+GGG | - | chr5.1:29790083-29790102 | MS.gene074024:intron | 40.0% |
| !!! | ATGTCTAGTAGGTTTTGGCT+AGG | - | chr5.1:29789648-29789667 | MS.gene074024:intron | 40.0% |
| AACTATGTGACCATAGCCAC+AGG | + | chr5.1:29790259-29790278 | None:intergenic | 45.0% | |
| ACTAAAGGTCATCAACCACC+TGG | - | chr5.1:29790530-29790549 | MS.gene074024:intron | 45.0% | |
| ACTATGTGACCATAGCCACA+GGG | + | chr5.1:29790258-29790277 | None:intergenic | 45.0% | |
| AGCGGCATTTGTGGTAATTG+TGG | + | chr5.1:29791184-29791203 | None:intergenic | 45.0% | |
| ATGGGGTTAAGTCCTATCAC+TGG | - | chr5.1:29789870-29789889 | MS.gene074024:intron | 45.0% | |
| ATGTTCTTAGTGCTGCAGAG+AGG | - | chr5.1:29791266-29791285 | MS.gene074024:CDS | 45.0% | |
| CCCAATAAGTGAGCCATTGT+TGG | + | chr5.1:29788958-29788977 | None:intergenic | 45.0% | |
| CGCAAATGTGGTATGTTCCT+CGG | - | chr5.1:29791218-29791237 | MS.gene074024:CDS | 45.0% | |
| CTAAAGGTCATCAACCACCT+GGG | - | chr5.1:29790531-29790550 | MS.gene074024:intron | 45.0% | |
| CTTCTCTTGGTTGAGTTTGC+AGG | + | chr5.1:29789533-29789552 | None:intergenic | 45.0% | |
| GCGGCATTTGTGGTAATTGT+GGG | + | chr5.1:29791183-29791202 | None:intergenic | 45.0% | |
| GGCCTAAAACCATGTTCACA+TGG | - | chr5.1:29790156-29790175 | MS.gene074024:intron | 45.0% | |
| GTGATTGTGACTTCGTGTCA+TGG | + | chr5.1:29790317-29790336 | None:intergenic | 45.0% | |
| GTGTGTTAGCAGTGCGATTA+TGG | + | chr5.1:29790701-29790720 | None:intergenic | 45.0% | |
| TGATCAAGTCATTGGGGTCA+TGG | + | chr5.1:29790187-29790206 | None:intergenic | 45.0% | |
| TGTTAGGGTAACCTTTACCC+AGG | + | chr5.1:29790551-29790570 | None:intergenic | 45.0% | |
| TTGAGTACGCGTTAGCCAAT+TGG | + | chr5.1:29790793-29790812 | None:intergenic | 45.0% | |
| ! | CATGTGATCAGGGTTAGCAA+GGG | + | chr5.1:29790625-29790644 | None:intergenic | 45.0% |
| ! | CTAGGTTGGGCTTTCCTAAT+GGG | - | chr5.1:29789852-29789871 | MS.gene074024:intron | 45.0% |
| ! | TAGGTTGGGCTTTCCTAATG+GGG | - | chr5.1:29789853-29789872 | MS.gene074024:intron | 45.0% |
| ! | TCTAGGTTGGGCTTTCCTAA+TGG | - | chr5.1:29789851-29789870 | MS.gene074024:intron | 45.0% |
| ! | TGTGCTGCTCCATTAAAGTG+AGG | + | chr5.1:29791124-29791143 | None:intergenic | 45.0% |
| CCTTGCTAACCCTGATCACA+TGG | - | chr5.1:29790623-29790642 | MS.gene074024:intron | 50.0% | |
| GTCATCAACCACCTGGGTAA+AGG | - | chr5.1:29790537-29790556 | MS.gene074024:intron | 50.0% | |
| TAACCCAAACCCTGTGGCTA+TGG | - | chr5.1:29790246-29790265 | MS.gene074024:intron | 50.0% | |
| TACCACATTTGCGAAGCTCC+TGG | + | chr5.1:29791211-29791230 | None:intergenic | 50.0% | |
| TAGGGTAACCTTTACCCAGG+TGG | + | chr5.1:29790548-29790567 | None:intergenic | 50.0% | |
| TCTGGATAACCCAAACCCTG+TGG | - | chr5.1:29790240-29790259 | MS.gene074024:intron | 50.0% | |
| TCTTGAGTTCAAACCCTGCC+TGG | + | chr5.1:29790494-29790513 | None:intergenic | 50.0% | |
| TGACCATAGCCACAGGGTTT+GGG | + | chr5.1:29790252-29790271 | None:intergenic | 50.0% | |
| TTGGGTTATCCAGATGGTCC+TGG | + | chr5.1:29790234-29790253 | None:intergenic | 50.0% | |
| ! | AGGCCCAATGCCTTTTGTCT+TGG | - | chr5.1:29789281-29789300 | MS.gene074024:intron | 50.0% |
| ! | CAGGGTTTGGGTTATCCAGA+TGG | + | chr5.1:29790240-29790259 | None:intergenic | 50.0% |
| ! | CCATGTGATCAGGGTTAGCA+AGG | + | chr5.1:29790626-29790645 | None:intergenic | 50.0% |
| ATCCAGATGGTCCTGGCATC+TGG | + | chr5.1:29790227-29790246 | None:intergenic | 55.0% | |
| CCACAAATGCCGCTAATGCC+AGG | - | chr5.1:29791190-29791209 | MS.gene074024:intron | 55.0% | |
| CCTGGCATTAGCGGCATTTG+TGG | + | chr5.1:29791193-29791212 | None:intergenic | 55.0% | |
| GTGACCATAGCCACAGGGTT+TGG | + | chr5.1:29790253-29790272 | None:intergenic | 55.0% | |
| TAACCCATCACCCAGATGCC+AGG | - | chr5.1:29790213-29790232 | MS.gene074024:intron | 55.0% | |
| TCCAGATGGTCCTGGCATCT+GGG | + | chr5.1:29790226-29790245 | None:intergenic | 55.0% | |
| TGCCAGGAGCTTCGCAAATG+TGG | - | chr5.1:29791206-29791225 | MS.gene074024:CDS | 55.0% | |
| TGCGAAGCTCCTGGCATTAG+CGG | + | chr5.1:29791202-29791221 | None:intergenic | 55.0% | |
| ACCCAGATGCCAGGACCATC+TGG | - | chr5.1:29790222-29790241 | MS.gene074024:intron | 60.0% | |
| GGTCCTGGCATCTGGGTGAT+GGG | + | chr5.1:29790219-29790238 | None:intergenic | 60.0% | |
| TGGTCCTGGCATCTGGGTGA+TGG | + | chr5.1:29790220-29790239 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 29788634 | 29791592 | 29788634 | ID=MS.gene074024 |
| chr5.1 | mRNA | 29788634 | 29791592 | 29788634 | ID=MS.gene074024.t1;Parent=MS.gene074024 |
| chr5.1 | exon | 29791531 | 29791592 | 29791531 | ID=MS.gene074024.t1.exon1;Parent=MS.gene074024.t1 |
| chr5.1 | CDS | 29791531 | 29791592 | 29791531 | ID=cds.MS.gene074024.t1;Parent=MS.gene074024.t1 |
| chr5.1 | exon | 29791406 | 29791432 | 29791406 | ID=MS.gene074024.t1.exon2;Parent=MS.gene074024.t1 |
| chr5.1 | CDS | 29791406 | 29791432 | 29791406 | ID=cds.MS.gene074024.t1;Parent=MS.gene074024.t1 |
| chr5.1 | exon | 29791194 | 29791316 | 29791194 | ID=MS.gene074024.t1.exon3;Parent=MS.gene074024.t1 |
| chr5.1 | CDS | 29791194 | 29791316 | 29791194 | ID=cds.MS.gene074024.t1;Parent=MS.gene074024.t1 |
| chr5.1 | exon | 29788890 | 29789157 | 29788890 | ID=MS.gene074024.t1.exon4;Parent=MS.gene074024.t1 |
| chr5.1 | CDS | 29788890 | 29789157 | 29788890 | ID=cds.MS.gene074024.t1;Parent=MS.gene074024.t1 |
| chr5.1 | exon | 29788634 | 29788702 | 29788634 | ID=MS.gene074024.t1.exon5;Parent=MS.gene074024.t1 |
| chr5.1 | CDS | 29788634 | 29788702 | 29788634 | ID=cds.MS.gene074024.t1;Parent=MS.gene074024.t1 |
| Gene Sequence |
| Protein sequence |
