AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene074125


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene074125.t1 MTR_6g023610 93.633 267 17 0 1 267 1 267 0.0 511
MS.gene074125.t1 MTR_6g023910 81.298 262 49 0 1 262 1 262 8.32e-157 443
MS.gene074125.t1 MTR_6g023590 71.103 263 76 0 1 263 1 263 6.19e-137 393
MS.gene074125.t1 MTR_6g023990 69.925 266 79 1 1 265 1 266 1.08e-133 385
MS.gene074125.t1 MTR_6g023600 70.943 265 77 0 1 265 1 265 2.54e-131 379
MS.gene074125.t1 MTR_6g023950 72.414 261 72 0 1 261 1 261 4.04e-129 373
MS.gene074125.t1 MTR_6g023600 69.434 265 75 1 1 265 1 259 2.38e-125 363
MS.gene074125.t1 MTR_7g110130 50.800 250 122 1 12 261 5 253 7.62e-80 247
MS.gene074125.t1 MTR_2g090165 50.400 250 122 2 12 261 5 252 1.95e-76 239
MS.gene074125.t1 MTR_7g110140 46.565 262 138 2 11 272 4 263 3.09e-73 230
MS.gene074125.t1 MTR_7g110160 48.000 250 110 2 12 261 5 234 2.95e-70 222
MS.gene074125.t1 MTR_7g105460 42.960 277 150 3 1 277 1 269 3.10e-69 220
MS.gene074125.t1 MTR_4g052320 44.882 254 136 3 8 261 3 252 8.67e-66 211
MS.gene074125.t1 MTR_4g052300 45.635 252 132 3 8 259 3 249 1.15e-65 211
MS.gene074125.t1 MTR_4g052340 44.980 249 132 3 12 260 13 256 5.75e-65 209
MS.gene074125.t1 MTR_4g052350 45.565 248 130 3 12 259 13 255 5.64e-64 207
MS.gene074125.t1 MTR_6g035395 45.600 250 121 3 12 261 4 238 1.32e-62 202
MS.gene074125.t1 MTR_4g078630 42.647 272 136 5 12 267 18 285 8.03e-62 202
MS.gene074125.t1 MTR_7g071680 43.446 267 129 6 12 259 28 291 1.30e-60 199
MS.gene074125.t1 MTR_6g023940 54.167 216 35 4 1 214 1 154 1.32e-60 194
MS.gene074125.t1 MTR_7g107670 39.313 262 149 5 6 261 26 283 3.38e-56 187
MS.gene074125.t1 MTR_7g083870 39.773 264 146 6 6 261 28 286 3.12e-54 182
MS.gene074125.t1 MTR_7g105590 45.026 191 103 2 10 200 5 193 3.36e-50 168
MS.gene074125.t1 MTR_7g105580 41.200 250 127 4 12 261 7 236 1.21e-49 169
MS.gene074125.t1 MTR_3g020670 38.686 274 157 5 4 270 7 276 1.81e-47 164
MS.gene074125.t1 MTR_3g113870 41.622 185 105 3 21 205 29 210 3.54e-43 151
MS.gene074125.t1 MTR_4g084800 48.993 149 75 1 1 149 1 148 4.15e-43 148
MS.gene074125.t1 MTR_7g105570 34.340 265 115 3 13 277 21 226 1.92e-38 139
MS.gene074125.t1 MTR_3g031370 81.731 104 12 1 303 406 9 105 1.02e-36 131
MS.gene074125.t1 MTR_7g094510 32.296 257 164 5 11 262 4 255 4.93e-28 111
MS.gene074125.t1 MTR_7g113650 32.197 264 154 8 12 262 39 290 3.79e-27 110
MS.gene074125.t1 MTR_1g082760 33.208 265 150 8 12 262 39 290 4.68e-27 110
MS.gene074125.t1 MTR_7g094520 31.818 264 170 5 4 262 2 260 3.35e-26 106
MS.gene074125.t1 MTR_4g132850 31.873 251 158 6 12 259 6 246 5.77e-24 100
MS.gene074125.t1 MTR_3g085740 30.258 271 165 9 1 262 64 319 1.40e-23 100
MS.gene074125.t1 MTR_4g131740 30.075 266 158 8 12 262 39 291 5.73e-21 92.8
MS.gene074125.t1 MTR_4g058840 28.627 255 155 8 13 252 11 253 1.19e-19 88.6
MS.gene074125.t1 MTR_4g058820 28.627 255 155 8 13 252 11 253 1.19e-19 88.6
MS.gene074125.t1 MTR_4g064887 30.189 265 171 10 1 259 1 257 6.54e-19 86.7
MS.gene074125.t1 MTR_1g068955 31.518 257 161 7 11 259 12 261 2.47e-18 85.1
MS.gene074125.t1 MTR_4g058810 26.800 250 166 6 13 252 11 253 4.03e-18 84.3
MS.gene074125.t1 MTR_1196s0010 31.890 254 150 10 16 262 277 514 6.89e-18 86.3
MS.gene074125.t1 MTR_4g064887 31.308 214 136 8 1 208 1 209 3.63e-16 77.8
MS.gene074125.t1 MTR_3g068175 30.677 251 162 8 13 259 17 259 5.40e-16 78.2
MS.gene074125.t1 MTR_7g105560 59.701 67 26 1 1 67 1 66 2.36e-15 73.6
MS.gene074125.t1 MTR_1g051165 25.969 258 177 7 12 258 13 267 3.05e-15 76.3
MS.gene074125.t1 MTR_7g063320 29.688 256 168 7 13 262 15 264 6.54e-15 74.7
MS.gene074125.t1 MTR_7g063330 27.165 254 174 7 13 261 15 262 7.22e-15 74.7
MS.gene074125.t1 MTR_8g096580 30.653 199 121 7 16 206 48 237 1.20e-14 75.1
MS.gene074125.t1 MTR_3g068085 29.749 279 172 12 2 270 4 268 2.39e-14 73.2
MS.gene074125.t1 MTR_7g063270 27.308 260 166 8 13 261 16 263 7.45e-14 71.6
MS.gene074125.t1 MTR_7g063260 27.059 255 174 7 13 261 16 264 1.22e-13 71.2
MS.gene074125.t1 MTR_3g068070 27.444 266 175 9 3 261 5 259 1.25e-13 71.2
MS.gene074125.t1 MTR_8g096620 27.919 197 130 6 13 204 45 234 5.61e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene074125.t1 AT2G47140 49.802 253 125 2 9 261 2 252 3.02e-79 246
MS.gene074125.t1 AT2G47130 48.828 256 122 4 9 261 2 251 1.47e-74 233
MS.gene074125.t1 AT3G29260 50.198 253 123 3 9 261 2 251 1.30e-73 231
MS.gene074125.t1 AT2G47120 47.036 253 130 4 9 261 2 250 7.88e-72 226
MS.gene074125.t1 AT3G29250 46.667 255 134 2 7 261 36 288 6.00e-71 226
MS.gene074125.t1 AT3G29250 46.640 253 133 2 9 261 2 252 7.08e-71 224
MS.gene074125.t1 AT2G47120 46.800 250 129 4 12 261 6 251 3.56e-70 222
MS.gene074125.t1 AT3G29250 46.304 257 134 3 7 261 36 290 4.30e-69 221
MS.gene074125.t1 AT3G51680 43.321 277 135 5 1 259 20 292 8.38e-61 199
MS.gene074125.t1 AT3G26760 41.473 258 140 6 12 261 35 289 4.96e-57 190
MS.gene074125.t1 AT3G26770 40.078 257 139 6 12 259 40 290 8.49e-54 181
MS.gene074125.t1 AT4G03140 38.824 255 148 4 12 261 77 328 1.68e-50 174
MS.gene074125.t1 AT1G52340 40.385 260 143 5 12 261 17 274 1.50e-49 170
MS.gene074125.t1 AT3G42960 38.732 284 148 7 8 279 3 272 3.10e-46 160
MS.gene074125.t1 AT5G18210 33.333 258 159 5 13 262 8 260 4.26e-28 112
MS.gene074125.t1 AT5G18210 34.855 241 144 5 13 245 8 243 5.23e-26 106
MS.gene074125.t1 AT3G05260 31.599 269 148 8 12 262 36 286 8.22e-26 106
MS.gene074125.t1 AT3G03980 31.439 264 164 5 11 262 12 270 3.77e-25 104
MS.gene074125.t1 AT2G47150 32.411 253 104 8 15 261 3 194 4.52e-25 102
MS.gene074125.t1 AT1G54870 35.323 201 116 5 12 203 81 276 5.36e-25 105
MS.gene074125.t1 AT1G54870 35.323 201 116 5 12 203 83 278 6.22e-25 105
MS.gene074125.t1 AT3G04000 32.234 273 166 6 1 259 1 268 1.73e-24 102
MS.gene074125.t1 AT4G13180 27.473 273 164 8 7 262 7 262 1.18e-21 94.4
MS.gene074125.t1 AT1G24360 27.778 252 159 7 17 259 78 315 4.64e-20 90.9
MS.gene074125.t1 AT4G05530 31.325 249 162 6 12 259 8 248 8.42e-20 89.0
MS.gene074125.t1 AT1G63380 27.668 253 161 9 13 252 17 260 5.43e-18 84.3
MS.gene074125.t1 AT1G63380 27.668 253 161 9 13 252 19 262 5.48e-18 84.3
MS.gene074125.t1 AT1G63380 27.668 253 161 9 13 252 15 258 6.44e-18 84.0
MS.gene074125.t1 AT1G62610 27.419 248 168 7 13 252 19 262 1.11e-17 83.2
MS.gene074125.t1 AT1G62610 27.419 248 168 7 13 252 13 256 1.25e-17 83.2
MS.gene074125.t1 AT1G62610 27.419 248 168 7 13 252 14 257 1.34e-17 82.8
MS.gene074125.t1 AT1G62610 27.419 248 168 7 13 252 15 258 1.41e-17 82.8
MS.gene074125.t1 AT1G63380 27.668 253 161 9 13 252 22 265 1.46e-17 83.2
MS.gene074125.t1 AT5G06060 27.178 287 163 8 7 272 3 264 1.88e-17 82.4
MS.gene074125.t1 AT3G46170 25.869 259 169 6 13 258 26 274 5.61e-17 81.3
MS.gene074125.t1 AT2G29340 28.571 252 166 7 13 259 7 249 8.84e-17 80.1
MS.gene074125.t1 AT2G29340 28.175 252 167 7 13 259 7 249 1.92e-16 80.1
MS.gene074125.t1 AT2G30670 26.692 266 172 8 13 266 7 261 2.65e-16 79.0
MS.gene074125.t1 AT5G50770 30.481 187 122 5 13 196 45 226 1.33e-15 78.2
MS.gene074125.t1 AT3G55310 25.984 254 163 8 13 252 17 259 1.60e-15 77.0
MS.gene074125.t1 AT2G29310 28.571 273 158 12 13 266 7 261 1.78e-15 76.6
MS.gene074125.t1 AT3G47350 25.381 197 135 5 13 204 44 233 2.07e-15 77.0
MS.gene074125.t1 AT3G47350 25.381 197 135 5 13 204 44 233 2.86e-15 76.6
MS.gene074125.t1 AT3G55290 25.397 252 167 7 13 252 17 259 3.24e-15 75.9
MS.gene074125.t1 AT3G55290 25.397 252 167 7 13 252 18 260 3.41e-15 75.9
MS.gene074125.t1 AT2G29370 28.740 254 167 7 13 261 16 260 4.20e-15 75.5
MS.gene074125.t1 AT2G29360 28.906 256 164 8 13 261 16 260 5.39e-15 75.1
MS.gene074125.t1 AT5G50690 29.444 180 112 6 12 184 44 215 6.07e-15 74.7
MS.gene074125.t1 AT5G50590 29.444 180 112 6 12 184 44 215 6.07e-15 74.7
MS.gene074125.t1 AT3G47360 26.904 197 132 5 13 204 45 234 7.26e-15 75.5
MS.gene074125.t1 AT2G29260 27.888 251 169 7 13 259 68 310 1.44e-14 74.7
MS.gene074125.t1 AT2G29340 28.856 201 132 6 13 208 7 201 1.46e-14 72.8
MS.gene074125.t1 AT2G29340 28.856 201 132 6 13 208 7 201 1.46e-14 72.8
MS.gene074125.t1 AT5G50690 29.444 180 112 6 12 184 44 215 1.74e-14 74.3
MS.gene074125.t1 AT5G50590 29.444 180 112 6 12 184 44 215 1.74e-14 74.3
MS.gene074125.t1 AT5G50600 25.258 194 139 4 13 204 45 234 2.75e-14 74.3
MS.gene074125.t1 AT5G50700 25.258 194 139 4 13 204 45 234 2.75e-14 74.3
MS.gene074125.t1 AT2G29320 28.016 257 162 9 13 259 13 256 1.91e-13 70.5
MS.gene074125.t1 AT2G29300 28.409 264 160 10 13 263 7 254 2.00e-13 70.9
MS.gene074125.t1 AT2G29300 28.462 260 157 10 13 259 7 250 2.18e-13 70.5
MS.gene074125.t1 AT1G07450 28.462 260 167 11 9 261 4 251 4.83e-13 69.3
MS.gene074125.t1 AT2G29310 30.000 210 118 9 13 208 7 201 5.20e-13 68.2
MS.gene074125.t1 AT2G29350 27.734 256 172 7 8 259 10 256 9.02e-13 68.6
MS.gene074125.t1 AT2G17845 26.437 261 168 9 13 258 47 298 1.47e-12 68.6
MS.gene074125.t1 AT2G29350 29.353 201 133 6 8 204 10 205 8.16e-12 65.1
MS.gene074125.t1 AT1G07440 28.063 253 165 7 13 259 12 253 8.41e-12 65.9
MS.gene074125.t1 AT2G29290 27.413 259 160 8 13 259 7 249 9.86e-12 65.5

Find 121 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTCATCACCAACAATTC+TGG 0.188504 6.1:+6637167 MS.gene074125:CDS
ATTCACCCTTATCCCATATT+TGG 0.193090 6.1:-6634775 None:intergenic
TCCATCTGATCAGACTATTT+TGG 0.219303 6.1:+6634530 MS.gene074125:CDS
ATATCGAAGCATGCAATAAT+AGG 0.242360 6.1:+6634723 MS.gene074125:CDS
CATCCACTAACAACGGTCTT+AGG 0.262828 6.1:+6633586 MS.gene074125:CDS
CCATTGACTATGAGATTGTT+AGG 0.292303 6.1:+6634825 MS.gene074125:CDS
AGTGTGCAACTTGCCAAATA+TGG 0.311353 6.1:+6634762 MS.gene074125:CDS
GGCAGATGCTGTGTTGTTCT+TGG 0.317529 6.1:+6634926 MS.gene074125:CDS
CAATCAACGGTCAATGCTTA+TGG 0.322095 6.1:+6633819 MS.gene074125:CDS
GATATTATGTTTAGCAATGC+TGG 0.362324 6.1:+6634498 MS.gene074125:CDS
TCGTCGTCAATGGCGGATAT+TGG 0.383960 6.1:-6637406 None:intergenic
GCCAATGCCACTGGCACCTC+CGG 0.395916 6.1:-6633634 None:intergenic
TGAGGGAAGAGGAGAGAAGA+AGG 0.409362 6.1:+6637617 MS.gene074125:CDS
CAATGGTGGAGGGGCGCGTG+AGG 0.412179 6.1:+6634634 MS.gene074125:CDS
CGTCTCTTTGCCAATGCCAC+TGG 0.416288 6.1:-6633643 None:intergenic
TGAGCTTCCGTCGTCGTCAA+TGG 0.419459 6.1:-6637416 None:intergenic
CACATGCGGATGAAATTAAC+CGG 0.423129 6.1:+6637674 MS.gene074125:CDS
AATGGTGTTGCTAATCCATT+TGG 0.430166 6.1:-6634807 None:intergenic
CACACGGTGGAGCGGAGAAC+GGG 0.433381 6.1:+6637488 MS.gene074125:CDS
AACTTGCCAAATATGGGATA+AGG 0.435956 6.1:+6634769 MS.gene074125:CDS
TCTGATGAAGAGAGGAGGAT+TGG 0.441122 6.1:-6637198 None:intergenic
TGAGATTCAGAGAGCGTTGA+GGG 0.442709 6.1:+6637600 MS.gene074125:CDS
CACCATGCGTGCACCTTGAT+CGG 0.442941 6.1:-6633679 None:intergenic
CTGCATCCATTGGCGGCCAC+AGG 0.444834 6.1:+6633742 MS.gene074125:CDS
CGCTTGATCTGAACGACGAC+GGG 0.445733 6.1:+6637518 MS.gene074125:CDS
ACCGGAGGTGCCAGTGGCAT+TGG 0.446047 6.1:+6633633 MS.gene074125:CDS
AATGGTGGAGGGGCGCGTGA+GGG 0.448062 6.1:+6634635 MS.gene074125:CDS
TATCGAAGCATGCAATAATA+GGG 0.448557 6.1:+6634724 MS.gene074125:CDS
GTGAATTGTGTCTCGCCAAA+TGG 0.451124 6.1:+6634792 MS.gene074125:CDS
TTGAGAAGAGGAGTGGGTGG+TGG 0.455819 6.1:-6637223 None:intergenic
CGCGGCGCGTGCAATGGTGG+AGG 0.462300 6.1:+6634623 MS.gene074125:CDS
ACTTGCCAAATATGGGATAA+GGG 0.469695 6.1:+6634770 MS.gene074125:CDS
AATCAAGTGGCTGCATCCAT+TGG 0.471481 6.1:+6633732 MS.gene074125:CDS
GTGTGCACAGCGAGCGTCCT+GGG 0.473161 6.1:+6634666 MS.gene074125:CDS
GCGCATCTCTTTGCCGATCA+AGG 0.473582 6.1:+6633666 MS.gene074125:CDS
GTGTTTGCAGTTAACATTCG+AGG 0.478434 6.1:+6634579 MS.gene074125:CDS
TGTAACCGTTCGGAATTTGA+TGG 0.479310 6.1:-6637462 None:intergenic
GAAGAGCAGCGACGAGGTGG+AGG 0.481631 6.1:+6637543 MS.gene074125:CDS
ATGGTGGAGGGGCGCGTGAG+GGG 0.485342 6.1:+6634636 MS.gene074125:CDS
CATTGACTATGAGATTGTTA+GGG 0.487258 6.1:+6634826 MS.gene074125:CDS
GGTGACGATGGCTACTTTGC+CGG 0.490347 6.1:-6633613 None:intergenic
GTGTGCAACTTGCCAAATAT+GGG 0.491153 6.1:+6634763 MS.gene074125:CDS
TGTGTGCACAGCGAGCGTCC+TGG 0.491477 6.1:+6634665 MS.gene074125:CDS
TCAGAGAGCGTTGAGGGAAG+AGG 0.492802 6.1:+6637606 MS.gene074125:CDS
AGCTGACATTCAAGACGAGT+TGG 0.493492 6.1:+6633707 MS.gene074125:CDS
CGACGAGGTGGAGGAAGAAG+AGG 0.495491 6.1:+6637552 MS.gene074125:CDS
GGTGCTCCTGTGGCCGCCAA+TGG 0.498816 6.1:-6633748 None:intergenic
GCGGCGCGTGCAATGGTGGA+GGG 0.502098 6.1:+6634624 MS.gene074125:CDS
CGTCAATGGCGGATATTGGC+TGG 0.512310 6.1:-6637402 None:intergenic
TTATGAACAAAACAAGAGGT+TGG 0.516866 6.1:+6634875 MS.gene074125:CDS
CCTAACAATCTCATAGTCAA+TGG 0.517810 6.1:-6634825 None:intergenic
ATATTATGTTTAGCAATGCT+GGG 0.517928 6.1:+6634499 MS.gene074125:CDS
GCTGACATTCAAGACGAGTT+GGG 0.518586 6.1:+6633708 MS.gene074125:CDS
AACAACGGTCTTAGGTTAGC+CGG 0.520911 6.1:+6633594 MS.gene074125:CDS
GAAATACGCGGCGCGTGCAA+TGG 0.524610 6.1:+6634617 MS.gene074125:CDS
AACGGTCAATGCTTATGGAC+AGG 0.524985 6.1:+6633824 MS.gene074125:CDS
GGTAACTGTTCCAGAATTGT+TGG 0.525748 6.1:-6637177 None:intergenic
GGCATTGATCTTCGTGTGGA+TGG 0.530191 6.1:+6634975 MS.gene074125:CDS
TCCAAAATAGTCTGATCAGA+TGG 0.534810 6.1:-6634531 None:intergenic
TAACCTAAGACCGTTGTTAG+TGG 0.538002 6.1:-6633589 None:intergenic
GGCAAAGTAGCCATCGTCAC+CGG 0.538495 6.1:+6633615 MS.gene074125:CDS
AATGAATCTGACTTTGTCAC+TGG 0.541395 6.1:+6634954 MS.gene074125:CDS
AAACAAGAGGTTGGAAGGAG+TGG 0.542973 6.1:+6634884 MS.gene074125:CDS
TGCCGATCAAGGTGCACGCA+TGG 0.543365 6.1:+6633677 MS.gene074125:CDS
GAGGAAGAAGAGGAGAGAAG+CGG 0.543458 6.1:+6637562 MS.gene074125:CDS
GTAGTATTCCGTAGCATCAT+CGG 0.546532 6.1:-6637380 None:intergenic
CTTCGATTGGTGTTGAGAAG+AGG 0.547132 6.1:-6637235 None:intergenic
ATACGCGGCGCGTGCAATGG+TGG 0.549661 6.1:+6634620 MS.gene074125:CDS
CCGTGTGCAGTGTAACCGTT+CGG 0.550202 6.1:-6637472 None:intergenic
GAACAAAACAAGAGGTTGGA+AGG 0.555611 6.1:+6634879 MS.gene074125:CDS
CGTGAATTCCGATGATGCTA+CGG 0.558912 6.1:+6637372 MS.gene074125:CDS
CAGTGGCATTGGCAAAGAGA+CGG 0.560685 6.1:+6633644 MS.gene074125:CDS
ACTGGCACCTCCGGTGACGA+TGG 0.561243 6.1:-6633625 None:intergenic
GAAATGAAATAGAGGGGTGA+GGG 0.561442 6.1:-6637150 None:intergenic
ATCGTCACCGGAGGTGCCAG+TGG 0.562053 6.1:+6633627 MS.gene074125:CDS
TGAAATGAAATAGAGGGGTG+AGG 0.562888 6.1:-6637151 None:intergenic
CAAGTGGCTGCATCCATTGG+CGG 0.565708 6.1:+6633735 MS.gene074125:CDS
CGGCGCGTGCAATGGTGGAG+GGG 0.566170 6.1:+6634625 MS.gene074125:CDS
GACGACGACGGAAGCTCAGA+CGG 0.571106 6.1:+6637421 MS.gene074125:CDS
GCACACGGTGGAGCGGAGAA+CGG 0.579593 6.1:+6637487 MS.gene074125:CDS
AGAAGAGGAGAGAAGCGGAG+AGG 0.586392 6.1:+6637567 MS.gene074125:CDS
TTGGTGATGAAATGAAATAG+AGG 0.589585 6.1:-6637158 None:intergenic
TGCTATGTCACAATGGATGA+AGG 0.590504 6.1:-6633769 None:intergenic
TTATTGGTAGAAATCAGAAA+CGG 0.594184 6.1:+6637337 MS.gene074125:intron
TCAAGACACCTACGCTACCC+AGG 0.598002 6.1:-6634683 None:intergenic
TGGTGGATTCTGATGAAGAG+AGG 0.603393 6.1:-6637206 None:intergenic
CACTGGCATTGATCTTCGTG+TGG 0.604023 6.1:+6634971 MS.gene074125:CDS
GCGAGCGTCCTGGGTAGCGT+AGG 0.605148 6.1:+6634675 MS.gene074125:CDS
AGACGAGTTGGGCAATCAAG+TGG 0.608891 6.1:+6633719 MS.gene074125:CDS
GGTGAAGAGCAGCGACGAGG+TGG 0.616881 6.1:+6637540 MS.gene074125:CDS
ACGCTTGATCTGAACGACGA+CGG 0.618941 6.1:+6637517 MS.gene074125:CDS
AATAATAGGGTTGATGCGCT+CGG 0.618943 6.1:+6634737 MS.gene074125:CDS
GATTTCCATCAAATTCCGAA+CGG 0.619226 6.1:+6637457 MS.gene074125:CDS
CTCTTCTCAACACCAATCGA+AGG 0.619635 6.1:+6637236 MS.gene074125:CDS
TGGTGATGAAATGAAATAGA+GGG 0.627093 6.1:-6637157 None:intergenic
ATTGGTGTTGAGAAGAGGAG+TGG 0.627230 6.1:-6637230 None:intergenic
GTGTTGAGAAGAGGAGTGGG+TGG 0.627736 6.1:-6637226 None:intergenic
TGATTTATGAACAAAACAAG+AGG 0.629161 6.1:+6634871 MS.gene074125:CDS
GAATGTTAACTGCAAACACA+TGG 0.631228 6.1:-6634575 None:intergenic
ATGAGATTCAGAGAGCGTTG+AGG 0.632077 6.1:+6637599 MS.gene074125:CDS
CTTCATTTGCTATGTCACAA+TGG 0.633784 6.1:-6633776 None:intergenic
TTGGTGTTGAGAAGAGGAGT+GGG 0.635795 6.1:-6637229 None:intergenic
GCTTCCGTCGTCGTCAATGG+CGG 0.636492 6.1:-6637413 None:intergenic
TGGATTCTGATGAAGAGAGG+AGG 0.638241 6.1:-6637203 None:intergenic
TTACACTGCACACGGTGGAG+CGG 0.644263 6.1:+6637480 MS.gene074125:CDS
AATGGATGAAGGTGCTCCTG+TGG 0.649213 6.1:-6633758 None:intergenic
CCGAACGGTTACACTGCACA+CGG 0.649523 6.1:+6637472 MS.gene074125:CDS
AAAGTAGCCATCGTCACCGG+AGG 0.651370 6.1:+6633618 MS.gene074125:CDS
ATTGACTATGAGATTGTTAG+GGG 0.661906 6.1:+6634827 MS.gene074125:CDS
TGGGTAGCGTAGGTGTCTTG+AGG 0.663825 6.1:+6634685 MS.gene074125:CDS
GACATTGTGCGTGAAATACG+CGG 0.664173 6.1:+6634605 MS.gene074125:CDS
CGATCAAGGTGCACGCATGG+TGG 0.678300 6.1:+6633680 MS.gene074125:CDS
GGTTCTTAACACTAAACATG+TGG 0.680290 6.1:+6634905 MS.gene074125:CDS
AAGCTCAGACGGAGAAAACG+CGG 0.682266 6.1:+6637432 MS.gene074125:CDS
ATATCCGCCATTGACGACGA+CGG 0.682820 6.1:+6637409 MS.gene074125:CDS
GAAGCTTCATCCACTAACAA+CGG 0.689074 6.1:+6633579 MS.gene074125:CDS
TAGATTAATAGATACACATG+CGG 0.695676 6.1:+6637660 MS.gene074125:CDS
AACGGTTACACTGCACACGG+TGG 0.699963 6.1:+6637475 MS.gene074125:CDS
GCTTGATCTGAACGACGACG+GGG 0.700063 6.1:+6637519 MS.gene074125:CDS
CGGGGTGAAGAGCAGCGACG+AGG 0.700765 6.1:+6637537 MS.gene074125:CDS
GGTGATGAAATGAAATAGAG+GGG 0.701915 6.1:-6637156 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTATATTAAATAAA+TGG - chr6.1:6635188-6635207 None:intergenic 0.0%
!! AAAAATTATATTAAATAAAT+GGG - chr6.1:6635187-6635206 None:intergenic 0.0%
!!! AATAAAATAAATTTTTTTAT+AGG + chr6.1:6634306-6634325 MS.gene074125:intron 0.0%
!!! ATAAAATAAATTTTTTTATA+GGG + chr6.1:6634307-6634326 MS.gene074125:intron 0.0%
!! ATAAAAATTAAACTATATCA+TGG + chr6.1:6635153-6635172 MS.gene074125:intron 10.0%
!! TAAAAATTAAACTATATCAT+GGG + chr6.1:6635154-6635173 MS.gene074125:intron 10.0%
!!! ATATTTTAATTTGAAAACTA+CGG - chr6.1:6636733-6636752 None:intergenic 10.0%
!!! ATTTTAATTTTGATCTTTAT+TGG + chr6.1:6637321-6637340 MS.gene074125:intron 10.0%
!!! TTCTTTTATTTTATTTTACT+AGG + chr6.1:6637268-6637287 MS.gene074125:intron 10.0%
!!! TTGACATTTATTTAATTTAA+TGG - chr6.1:6635602-6635621 None:intergenic 10.0%
!! ACATTATAATGTAGAAATTA+TGG - chr6.1:6634158-6634177 None:intergenic 15.0%
!! CTTATATTGAATTTATTTGA+AGG + chr6.1:6635051-6635070 MS.gene074125:intron 15.0%
!! TCTTAAAACTATTTAGATAA+TGG - chr6.1:6635337-6635356 None:intergenic 15.0%
!!! AAATATGAAAACTACAATTT+TGG + chr6.1:6636852-6636871 MS.gene074125:intron 15.0%
!!! AAATTGTAGTTTTCATATTT+AGG - chr6.1:6636852-6636871 None:intergenic 15.0%
!!! AATTGTAGTTTTCATATTTA+GGG - chr6.1:6636851-6636870 None:intergenic 15.0%
!!! ATAAAGTCTTATATAGTAAA+CGG - chr6.1:6634352-6634371 None:intergenic 15.0%
!!! TGTTTACTTTTTAATTCAAA+AGG + chr6.1:6635518-6635537 MS.gene074125:intron 15.0%
!! AAAAAATCTCATTCAATCAA+CGG + chr6.1:6633806-6633825 MS.gene074125:CDS 20.0%
!! CTACTTTAAATAAACAAACA+CGG + chr6.1:6635966-6635985 MS.gene074125:intron 20.0%
!! TAATTAATTAATTACACACG+TGG - chr6.1:6636953-6636972 None:intergenic 20.0%
!! TGCAACAATCTAAAAAATTT+AGG - chr6.1:6636045-6636064 None:intergenic 20.0%
!! TTATACTTATAATGAACCAA+AGG - chr6.1:6635393-6635412 None:intergenic 20.0%
!! TTTAGCCTAATATTTATAGT+AGG - chr6.1:6636783-6636802 None:intergenic 20.0%
!!! ATTGTAGTTTTCATATTTAG+GGG - chr6.1:6636850-6636869 None:intergenic 20.0%
!!! GAAAGAAAAAGTTGTTTTTT+AGG - chr6.1:6634462-6634481 None:intergenic 20.0%
!!! GATTTTAACATGATTGTTTT+TGG - chr6.1:6636570-6636589 None:intergenic 20.0%
!!! TAAAGTCTTATATAGTAAAC+GGG - chr6.1:6634351-6634370 None:intergenic 20.0%
!!! TACTGATAGTATAATTTTGT+AGG + chr6.1:6634245-6634264 MS.gene074125:intron 20.0%
!!! TGAAGAATTTGAAGTTTTTT+GGG - chr6.1:6634008-6634027 None:intergenic 20.0%
!!! TTGAAGAATTTGAAGTTTTT+TGG - chr6.1:6634009-6634028 None:intergenic 20.0%
! AAAAAGACCAAATATGCAAA+GGG - chr6.1:6636894-6636913 None:intergenic 25.0%
! AAATAGTTTGATCCTACAAA+GGG - chr6.1:6636365-6636384 None:intergenic 25.0%
! AAGAAGTAAGACATATAAGA+GGG + chr6.1:6635995-6636014 MS.gene074125:intron 25.0%
! AATTTAGGAAATGTGAAGTA+AGG - chr6.1:6636030-6636049 None:intergenic 25.0%
! ATATTATGTTTAGCAATGCT+GGG + chr6.1:6634499-6634518 MS.gene074125:CDS 25.0%
! CAAAATTTCATAATACACGT+AGG - chr6.1:6633884-6633903 None:intergenic 25.0%
! CATCACCTACTATAAATATT+AGG + chr6.1:6636775-6636794 MS.gene074125:intron 25.0%
! TAGATTAATAGATACACATG+CGG + chr6.1:6637660-6637679 MS.gene074125:CDS 25.0%
! TGATTTATGAACAAAACAAG+AGG + chr6.1:6634871-6634890 MS.gene074125:CDS 25.0%
! TTATTGGTAGAAATCAGAAA+CGG + chr6.1:6637337-6637356 MS.gene074125:intron 25.0%
!! AAAGGGTTCAAATTTTCTTT+TGG - chr6.1:6636348-6636367 None:intergenic 25.0%
!! AAAGTCTTATATAGTAAACG+GGG - chr6.1:6634350-6634369 None:intergenic 25.0%
!! CGTGTTTGTTTATTTAAAGT+AGG - chr6.1:6635968-6635987 None:intergenic 25.0%
!! TATTTTTCACTCTACAATGA+AGG + chr6.1:6635273-6635292 MS.gene074125:intron 25.0%
!! TTTCTTTTGGCATTAATTCT+TGG - chr6.1:6636335-6636354 None:intergenic 25.0%
AAAAAATTCCTCACACTTCT+AGG + chr6.1:6635077-6635096 MS.gene074125:intron 30.0%
AAAAGACCAAATATGCAAAG+GGG - chr6.1:6636893-6636912 None:intergenic 30.0%
AAACTACGGATATTTGTGTT+TGG - chr6.1:6636719-6636738 None:intergenic 30.0%
AACATAATATCTACCTGTTG+TGG - chr6.1:6634489-6634508 None:intergenic 30.0%
AACTACATCTACAATACAAG+TGG + chr6.1:6636208-6636227 MS.gene074125:intron 30.0%
AGAAAATTTGAACCCTTTGT+AGG + chr6.1:6636350-6636369 MS.gene074125:intron 30.0%
ATATCGAAGCATGCAATAAT+AGG + chr6.1:6634723-6634742 MS.gene074125:CDS 30.0%
ATTGACTATGAGATTGTTAG+GGG + chr6.1:6634827-6634846 MS.gene074125:CDS 30.0%
CAAAAAGACCAAATATGCAA+AGG - chr6.1:6636895-6636914 None:intergenic 30.0%
CAAGAAGTAAGACATATAAG+AGG + chr6.1:6635994-6636013 MS.gene074125:intron 30.0%
CATTGTAGAGTGAAAAATAC+AGG - chr6.1:6635272-6635291 None:intergenic 30.0%
CTCTTATATGTCTTACTTCT+TGG - chr6.1:6635996-6636015 None:intergenic 30.0%
GAAAATACTCATTGGTCAAA+TGG + chr6.1:6635811-6635830 MS.gene074125:intron 30.0%
GAAATAGTTTGATCCTACAA+AGG - chr6.1:6636366-6636385 None:intergenic 30.0%
GATATTATGTTTAGCAATGC+TGG + chr6.1:6634498-6634517 MS.gene074125:CDS 30.0%
GATGAAATTAACCGGATTTA+GGG + chr6.1:6637682-6637701 MS.gene074125:CDS 30.0%
GCTAATCATATCCAAAAATG+TGG - chr6.1:6636142-6636161 None:intergenic 30.0%
GGACAGGTAAAAATTAACTA+GGG + chr6.1:6633840-6633859 MS.gene074125:intron 30.0%
GTAAACAAGACACTTATGTA+TGG + chr6.1:6635738-6635757 MS.gene074125:intron 30.0%
TAAATCTTGCATTATGCACA+AGG + chr6.1:6635546-6635565 MS.gene074125:intron 30.0%
TAAGAAGACTAATGATCACT+GGG - chr6.1:6636602-6636621 None:intergenic 30.0%
TATCGAAGCATGCAATAATA+GGG + chr6.1:6634724-6634743 MS.gene074125:CDS 30.0%
TGGACAGGTAAAAATTAACT+AGG + chr6.1:6633839-6633858 MS.gene074125:intron 30.0%
TTAAACTATATCATGGGCTT+TGG + chr6.1:6635160-6635179 MS.gene074125:intron 30.0%
TTAAGAAGACTAATGATCAC+TGG - chr6.1:6636603-6636622 None:intergenic 30.0%
TTATGAACAAAACAAGAGGT+TGG + chr6.1:6634875-6634894 MS.gene074125:CDS 30.0%
TTGAATGTGTTTCACGTTTA+GGG - chr6.1:6636251-6636270 None:intergenic 30.0%
TTTGAATGTGTTTCACGTTT+AGG - chr6.1:6636252-6636271 None:intergenic 30.0%
TTTGTAAGTGTGTTTGAACA+AGG - chr6.1:6636164-6636183 None:intergenic 30.0%
! ATTAGGCTAAAGTGCAATTT+TGG + chr6.1:6636792-6636811 MS.gene074125:intron 30.0%
! CATTGACTATGAGATTGTTA+GGG + chr6.1:6634826-6634845 MS.gene074125:CDS 30.0%
! TAACTTTAATTAGTCTCTGC+TGG - chr6.1:6634227-6634246 None:intergenic 30.0%
! TAAGCTTTTCTGATACTTCT+TGG + chr6.1:6636079-6636098 MS.gene074125:intron 30.0%
! TATGAGAGAAACCACATTTT+TGG + chr6.1:6636128-6636147 MS.gene074125:intron 30.0%
! TGGTGATGAAATGAAATAGA+GGG - chr6.1:6637160-6637179 None:intergenic 30.0%
! TGTTGTTCTTCATTTGTTAG+TGG - chr6.1:6637122-6637141 None:intergenic 30.0%
! TTTTCTTTCTTTTCCACAAC+AGG + chr6.1:6634473-6634492 MS.gene074125:intron 30.0%
!! ATCGCAACTTTTTGAAAGAT+AGG - chr6.1:6636821-6636840 None:intergenic 30.0%
!! TCGCAACTTTTTGAAAGATA+GGG - chr6.1:6636820-6636839 None:intergenic 30.0%
!! TTGGTGATGAAATGAAATAG+AGG - chr6.1:6637161-6637180 None:intergenic 30.0%
!!! CACAAACTAGTTTTCACTAT+TGG + chr6.1:6635664-6635683 MS.gene074125:intron 30.0%
AACTTGCCAAATATGGGATA+AGG + chr6.1:6634769-6634788 MS.gene074125:CDS 35.0%
AATGAATCTGACTTTGTCAC+TGG + chr6.1:6634954-6634973 MS.gene074125:CDS 35.0%
ACTTGCCAAATATGGGATAA+GGG + chr6.1:6634770-6634789 MS.gene074125:CDS 35.0%
ATTCACCCTTATCCCATATT+TGG - chr6.1:6634778-6634797 None:intergenic 35.0%
ATTTAGCCCCTTTGCATATT+TGG + chr6.1:6636884-6636903 MS.gene074125:intron 35.0%
CATTTCATCACCAACAATTC+TGG + chr6.1:6637167-6637186 MS.gene074125:CDS 35.0%
CCTAACAATCTCATAGTCAA+TGG - chr6.1:6634828-6634847 None:intergenic 35.0%
CGAATCAGGAAAATACTCAT+TGG + chr6.1:6635803-6635822 MS.gene074125:intron 35.0%
GAAAAAGCAATACCTTCGAT+TGG - chr6.1:6637251-6637270 None:intergenic 35.0%
GAAAGAAGAAGAAAGAAAGG+AGG - chr6.1:6637091-6637110 None:intergenic 35.0%
GAATGTTAACTGCAAACACA+TGG - chr6.1:6634578-6634597 None:intergenic 35.0%
GACAAAGTCTTAAACGAATC+AGG + chr6.1:6635789-6635808 MS.gene074125:intron 35.0%
GATGTGAGTTATTGATCTAG+TGG + chr6.1:6635716-6635735 MS.gene074125:intron 35.0%
GATTTCCATCAAATTCCGAA+CGG + chr6.1:6637457-6637476 MS.gene074125:CDS 35.0%
GGAGAAAGAAGAAGAAAGAA+AGG - chr6.1:6637094-6637113 None:intergenic 35.0%
GGATGAAATTAACCGGATTT+AGG + chr6.1:6637681-6637700 MS.gene074125:CDS 35.0%
GGTGATGAAATGAAATAGAG+GGG - chr6.1:6637159-6637178 None:intergenic 35.0%
GGTTCTTAACACTAAACATG+TGG + chr6.1:6634905-6634924 MS.gene074125:CDS 35.0%
TCCAAAATAGTCTGATCAGA+TGG - chr6.1:6634534-6634553 None:intergenic 35.0%
TCTAACATGCGCAAACAAAA+TGG - chr6.1:6635771-6635790 None:intergenic 35.0%
TCTTGGTAGACTTTCTATCT+GGG - chr6.1:6636318-6636337 None:intergenic 35.0%
TTCTTGGTAGACTTTCTATC+TGG - chr6.1:6636319-6636338 None:intergenic 35.0%
! CCATTGACTATGAGATTGTT+AGG + chr6.1:6634825-6634844 MS.gene074125:CDS 35.0%
! TCCATCTGATCAGACTATTT+TGG + chr6.1:6634530-6634549 MS.gene074125:CDS 35.0%
!! AATGGTGTTGCTAATCCATT+TGG - chr6.1:6634810-6634829 None:intergenic 35.0%
!! ATGTGATGATAGTGGAAAGT+GGG - chr6.1:6636758-6636777 None:intergenic 35.0%
!! ATTTAGAAGAGGAGTGTTGT+TGG - chr6.1:6636285-6636304 None:intergenic 35.0%
!! CGCAACTTTTTGAAAGATAG+GGG - chr6.1:6636819-6636838 None:intergenic 35.0%
!! CTTCATTTGCTATGTCACAA+TGG - chr6.1:6633779-6633798 None:intergenic 35.0%
!! GCAACTTTTTGAAAGATAGG+GGG - chr6.1:6636818-6636837 None:intergenic 35.0%
AAATTCCTCACACTTCTAGG+TGG + chr6.1:6635080-6635099 MS.gene074125:intron 40.0%
AGTAGGTGATGTGATGATAG+TGG - chr6.1:6636766-6636785 None:intergenic 40.0%
AGTGTGCAACTTGCCAAATA+TGG + chr6.1:6634762-6634781 MS.gene074125:CDS 40.0%
ATACTTCTTGGTCAGAGAAG+AGG + chr6.1:6636091-6636110 MS.gene074125:intron 40.0%
ATGCAAAGGGGCTAAATCTT+AGG - chr6.1:6636881-6636900 None:intergenic 40.0%
ATTTGAACACGACGTCTAGA+AGG - chr6.1:6636405-6636424 None:intergenic 40.0%
CAATCAACGGTCAATGCTTA+TGG + chr6.1:6633819-6633838 MS.gene074125:CDS 40.0%
CACATGCGGATGAAATTAAC+CGG + chr6.1:6637674-6637693 MS.gene074125:CDS 40.0%
CTTGGTAGACTTTCTATCTG+GGG - chr6.1:6636317-6636336 None:intergenic 40.0%
GAAATGAAATAGAGGGGTGA+GGG - chr6.1:6637153-6637172 None:intergenic 40.0%
GAACAAAACAAGAGGTTGGA+AGG + chr6.1:6634879-6634898 MS.gene074125:CDS 40.0%
GAAGCTTCATCCACTAACAA+CGG + chr6.1:6633579-6633598 MS.gene074125:CDS 40.0%
GGTAACTGTTCCAGAATTGT+TGG - chr6.1:6637180-6637199 None:intergenic 40.0%
GTAGTATTCCGTAGCATCAT+CGG - chr6.1:6637383-6637402 None:intergenic 40.0%
GTGTGCAACTTGCCAAATAT+GGG + chr6.1:6634763-6634782 MS.gene074125:CDS 40.0%
GTGTTTGCAGTTAACATTCG+AGG + chr6.1:6634579-6634598 MS.gene074125:CDS 40.0%
TAACCTAAGACCGTTGTTAG+TGG - chr6.1:6633592-6633611 None:intergenic 40.0%
TACTTCTTGGTCAGAGAAGA+GGG + chr6.1:6636092-6636111 MS.gene074125:intron 40.0%
TGAAATGAAATAGAGGGGTG+AGG - chr6.1:6637154-6637173 None:intergenic 40.0%
TGCAAAGGGGCTAAATCTTA+GGG - chr6.1:6636880-6636899 None:intergenic 40.0%
TGCTATGTCACAATGGATGA+AGG - chr6.1:6633772-6633791 None:intergenic 40.0%
TGTAACCGTTCGGAATTTGA+TGG - chr6.1:6637465-6637484 None:intergenic 40.0%
TTCACGTTTAGGGACCATAA+AGG - chr6.1:6636241-6636260 None:intergenic 40.0%
TTGGTAGACTTTCTATCTGG+GGG - chr6.1:6636316-6636335 None:intergenic 40.0%
TTTGAACACGACGTCTAGAA+GGG - chr6.1:6636404-6636423 None:intergenic 40.0%
! CTTCATTTGTTAGTGGAGAG+AGG - chr6.1:6637115-6637134 None:intergenic 40.0%
!! AATAATAGGGTTGATGCGCT+CGG + chr6.1:6634737-6634756 MS.gene074125:CDS 40.0%
!! GATGTGATGATAGTGGAAAG+TGG - chr6.1:6636759-6636778 None:intergenic 40.0%
!! GGGGGACTTTTATTTAGAAG+AGG - chr6.1:6636296-6636315 None:intergenic 40.0%
AAACAAGAGGTTGGAAGGAG+TGG + chr6.1:6634884-6634903 MS.gene074125:CDS 45.0%
AACAACGGTCTTAGGTTAGC+CGG + chr6.1:6633594-6633613 MS.gene074125:CDS 45.0%
AACGGTCAATGCTTATGGAC+AGG + chr6.1:6633824-6633843 MS.gene074125:CDS 45.0%
AAGAAAGGAGGAGATCAGAG+AGG - chr6.1:6637079-6637098 None:intergenic 45.0%
AATCAAGTGGCTGCATCCAT+TGG + chr6.1:6633732-6633751 MS.gene074125:CDS 45.0%
ACGTCTAGAAGGGGTCTAAA+GGG - chr6.1:6636394-6636413 None:intergenic 45.0%
ACGTTTAGGGACCATAAAGG+AGG - chr6.1:6636238-6636257 None:intergenic 45.0%
AGCTGACATTCAAGACGAGT+TGG + chr6.1:6633707-6633726 MS.gene074125:CDS 45.0%
CAAAGGGGCTAAATCTTAGG+GGG - chr6.1:6636878-6636897 None:intergenic 45.0%
CATATTCGACATGTACCACG+TGG + chr6.1:6636649-6636668 MS.gene074125:intron 45.0%
CATCCACTAACAACGGTCTT+AGG + chr6.1:6633586-6633605 MS.gene074125:CDS 45.0%
CGTGAATTCCGATGATGCTA+CGG + chr6.1:6637372-6637391 MS.gene074125:CDS 45.0%
CTCTTCTCAACACCAATCGA+AGG + chr6.1:6637236-6637255 MS.gene074125:CDS 45.0%
GACATTGTGCGTGAAATACG+CGG + chr6.1:6634605-6634624 MS.gene074125:CDS 45.0%
GCAAAGGGGCTAAATCTTAG+GGG - chr6.1:6636879-6636898 None:intergenic 45.0%
GCTGACATTCAAGACGAGTT+GGG + chr6.1:6633708-6633727 MS.gene074125:CDS 45.0%
GTGAATTGTGTCTCGCCAAA+TGG + chr6.1:6634792-6634811 MS.gene074125:CDS 45.0%
TCTGATGAAGAGAGGAGGAT+TGG - chr6.1:6637201-6637220 None:intergenic 45.0%
TGGATTCTGATGAAGAGAGG+AGG - chr6.1:6637206-6637225 None:intergenic 45.0%
TGGTAGACTTTCTATCTGGG+GGG - chr6.1:6636315-6636334 None:intergenic 45.0%
TTGAACACGACGTCTAGAAG+GGG - chr6.1:6636403-6636422 None:intergenic 45.0%
TTGCTATGTTTCTCTCCACG+TGG - chr6.1:6636667-6636686 None:intergenic 45.0%
TTTAGGGACCATAAAGGAGG+AGG - chr6.1:6636235-6636254 None:intergenic 45.0%
! ACTTCTAGGTGGAGTGTTAG+AGG + chr6.1:6635091-6635110 MS.gene074125:intron 45.0%
! TGTTAGAGGTGTATGGAGTG+AGG + chr6.1:6635105-6635124 MS.gene074125:intron 45.0%
!! AGAAGAGGAGTGTTGTTGGT+TGG - chr6.1:6636281-6636300 None:intergenic 45.0%
!! ATGAGATTCAGAGAGCGTTG+AGG + chr6.1:6637599-6637618 MS.gene074125:CDS 45.0%
!! ATTGGTGTTGAGAAGAGGAG+TGG - chr6.1:6637233-6637252 None:intergenic 45.0%
!! CTTCGATTGGTGTTGAGAAG+AGG - chr6.1:6637238-6637257 None:intergenic 45.0%
!! TGAGATTCAGAGAGCGTTGA+GGG + chr6.1:6637600-6637619 MS.gene074125:CDS 45.0%
!! TGGTGGATTCTGATGAAGAG+AGG - chr6.1:6637209-6637228 None:intergenic 45.0%
!! TTGGTGTTGAGAAGAGGAGT+GGG - chr6.1:6637232-6637251 None:intergenic 45.0%
!!! ATTTAATATAATTTTTTAAG+TGG + chr6.1:6635191-6635210 MS.gene074125:intron 5.0%
AAGCTCAGACGGAGAAAACG+CGG + chr6.1:6637432-6637451 MS.gene074125:CDS 50.0%
ACGCTTGATCTGAACGACGA+CGG + chr6.1:6637517-6637536 MS.gene074125:CDS 50.0%
AGGAGGAGATCAGAGAGGAA+AGG - chr6.1:6637074-6637093 None:intergenic 50.0%
ATATCCGCCATTGACGACGA+CGG + chr6.1:6637409-6637428 MS.gene074125:CDS 50.0%
CAAGTGGTCCTCCTCCTTTA+TGG + chr6.1:6636224-6636243 MS.gene074125:intron 50.0%
GACGTCTAGAAGGGGTCTAA+AGG - chr6.1:6636395-6636414 None:intergenic 50.0%
GGTAGACTTTCTATCTGGGG+GGG - chr6.1:6636314-6636333 None:intergenic 50.0%
TGACCAAGTCAACGCATACG+CGG + chr6.1:6636923-6636942 MS.gene074125:intron 50.0%
TGAGGGAAGAGGAGAGAAGA+AGG + chr6.1:6637617-6637636 MS.gene074125:CDS 50.0%
TGTGTCGTGCATGTTGCCTT+TGG + chr6.1:6635374-6635393 MS.gene074125:intron 50.0%
! ACACTCCACCTAGAAGTGTG+AGG - chr6.1:6635088-6635107 None:intergenic 50.0%
! AGACGAGTTGGGCAATCAAG+TGG + chr6.1:6633719-6633738 MS.gene074125:CDS 50.0%
! GGCAGATGCTGTGTTGTTCT+TGG + chr6.1:6634926-6634945 MS.gene074125:CDS 50.0%
! GGTGGAGTGTTAGAGGTGTA+TGG + chr6.1:6635098-6635117 MS.gene074125:intron 50.0%
!! AATGGATGAAGGTGCTCCTG+TGG - chr6.1:6633761-6633780 None:intergenic 50.0%
!! CACTGGCATTGATCTTCGTG+TGG + chr6.1:6634971-6634990 MS.gene074125:CDS 50.0%
!! CAGTGGCATTGGCAAAGAGA+CGG + chr6.1:6633644-6633663 MS.gene074125:CDS 50.0%
!! GGCATTGATCTTCGTGTGGA+TGG + chr6.1:6634975-6634994 MS.gene074125:CDS 50.0%
!! TCGTCGTCAATGGCGGATAT+TGG - chr6.1:6637409-6637428 None:intergenic 50.0%
AAAGTAGCCATCGTCACCGG+AGG + chr6.1:6633618-6633637 MS.gene074125:CDS 55.0%
AACGGTTACACTGCACACGG+TGG + chr6.1:6637475-6637494 MS.gene074125:CDS 55.0%
CAAGTGGCTGCATCCATTGG+CGG + chr6.1:6633735-6633754 MS.gene074125:CDS 55.0%
CACCATGCGTGCACCTTGAT+CGG - chr6.1:6633682-6633701 None:intergenic 55.0%
CCGAACGGTTACACTGCACA+CGG + chr6.1:6637472-6637491 MS.gene074125:CDS 55.0%
CCGTGTGCAGTGTAACCGTT+CGG - chr6.1:6637475-6637494 None:intergenic 55.0%
CGCTTGATCTGAACGACGAC+GGG + chr6.1:6637518-6637537 MS.gene074125:CDS 55.0%
CGTCTCTTTGCCAATGCCAC+TGG - chr6.1:6633646-6633665 None:intergenic 55.0%
GCGCATCTCTTTGCCGATCA+AGG + chr6.1:6633666-6633685 MS.gene074125:CDS 55.0%
GCTTGATCTGAACGACGACG+GGG + chr6.1:6637519-6637538 MS.gene074125:CDS 55.0%
GGCAAAGTAGCCATCGTCAC+CGG + chr6.1:6633615-6633634 MS.gene074125:CDS 55.0%
GTGTTGAGAAGAGGAGTGGG+TGG - chr6.1:6637229-6637248 None:intergenic 55.0%
TCAAGACACCTACGCTACCC+AGG - chr6.1:6634686-6634705 None:intergenic 55.0%
TGAGCTTCCGTCGTCGTCAA+TGG - chr6.1:6637419-6637438 None:intergenic 55.0%
TGGGTAGCGTAGGTGTCTTG+AGG + chr6.1:6634685-6634704 MS.gene074125:CDS 55.0%
TTACACTGCACACGGTGGAG+CGG + chr6.1:6637480-6637499 MS.gene074125:CDS 55.0%
TTGAGAAGAGGAGTGGGTGG+TGG - chr6.1:6637226-6637245 None:intergenic 55.0%
! GGTGACGATGGCTACTTTGC+CGG - chr6.1:6633616-6633635 None:intergenic 55.0%
!! CGTCAATGGCGGATATTGGC+TGG - chr6.1:6637405-6637424 None:intergenic 55.0%
!! TCAGAGAGCGTTGAGGGAAG+AGG + chr6.1:6637606-6637625 MS.gene074125:CDS 55.0%
CGATCAAGGTGCACGCATGG+TGG + chr6.1:6633680-6633699 MS.gene074125:CDS 60.0%
GAAATACGCGGCGCGTGCAA+TGG + chr6.1:6634617-6634636 MS.gene074125:CDS 60.0%
GACGACGACGGAAGCTCAGA+CGG + chr6.1:6637421-6637440 MS.gene074125:CDS 60.0%
GCTTCCGTCGTCGTCAATGG+CGG - chr6.1:6637416-6637435 None:intergenic 60.0%
TGCCGATCAAGGTGCACGCA+TGG + chr6.1:6633677-6633696 MS.gene074125:CDS 60.0%
!! ACGCCGCGTATGCGTTGACT+TGG - chr6.1:6636929-6636948 None:intergenic 60.0%
ACTGGCACCTCCGGTGACGA+TGG - chr6.1:6633628-6633647 None:intergenic 65.0%
ATACGCGGCGCGTGCAATGG+TGG + chr6.1:6634620-6634639 MS.gene074125:CDS 65.0%
CACACGGTGGAGCGGAGAAC+GGG + chr6.1:6637488-6637507 MS.gene074125:CDS 65.0%
CTGCATCCATTGGCGGCCAC+AGG + chr6.1:6633742-6633761 MS.gene074125:CDS 65.0%
GAAGAGCAGCGACGAGGTGG+AGG + chr6.1:6637543-6637562 MS.gene074125:CDS 65.0%
GCACACGGTGGAGCGGAGAA+CGG + chr6.1:6637487-6637506 MS.gene074125:CDS 65.0%
GCCAATGCCACTGGCACCTC+CGG - chr6.1:6633637-6633656 None:intergenic 65.0%
GGTGAAGAGCAGCGACGAGG+TGG + chr6.1:6637540-6637559 MS.gene074125:CDS 65.0%
GTGTGCACAGCGAGCGTCCT+GGG + chr6.1:6634666-6634685 MS.gene074125:CDS 65.0%
TGTGTGCACAGCGAGCGTCC+TGG + chr6.1:6634665-6634684 MS.gene074125:CDS 65.0%
! AATGGTGGAGGGGCGCGTGA+GGG + chr6.1:6634635-6634654 MS.gene074125:CDS 65.0%
!! ACCGGAGGTGCCAGTGGCAT+TGG + chr6.1:6633633-6633652 MS.gene074125:CDS 65.0%
!! ATCGTCACCGGAGGTGCCAG+TGG + chr6.1:6633627-6633646 MS.gene074125:CDS 65.0%
CGGGGTGAAGAGCAGCGACG+AGG + chr6.1:6637537-6637556 MS.gene074125:CDS 70.0%
GCGAGCGTCCTGGGTAGCGT+AGG + chr6.1:6634675-6634694 MS.gene074125:CDS 70.0%
GGTGCTCCTGTGGCCGCCAA+TGG - chr6.1:6633751-6633770 None:intergenic 70.0%
! ATGGTGGAGGGGCGCGTGAG+GGG + chr6.1:6634636-6634655 MS.gene074125:CDS 70.0%
! CAATGGTGGAGGGGCGCGTG+AGG + chr6.1:6634634-6634653 MS.gene074125:CDS 70.0%
! CGGCGCGTGCAATGGTGGAG+GGG + chr6.1:6634625-6634644 MS.gene074125:CDS 70.0%
! GCGGCGCGTGCAATGGTGGA+GGG + chr6.1:6634624-6634643 MS.gene074125:CDS 70.0%
CGCGGCGCGTGCAATGGTGG+AGG + chr6.1:6634623-6634642 MS.gene074125:CDS 75.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 6633573 6637702 6633573 ID=MS.gene074125
chr6.1 mRNA 6633573 6637702 6633573 ID=MS.gene074125.t1;Parent=MS.gene074125
chr6.1 exon 6633573 6633845 6633573 ID=MS.gene074125.t1.exon1;Parent=MS.gene074125.t1
chr6.1 CDS 6633573 6633845 6633573 ID=cds.MS.gene074125.t1;Parent=MS.gene074125.t1
chr6.1 exon 6634495 6635011 6634495 ID=MS.gene074125.t1.exon2;Parent=MS.gene074125.t1
chr6.1 CDS 6634495 6635011 6634495 ID=cds.MS.gene074125.t1;Parent=MS.gene074125.t1
chr6.1 exon 6637135 6637257 6637135 ID=MS.gene074125.t1.exon3;Parent=MS.gene074125.t1
chr6.1 CDS 6637135 6637257 6637135 ID=cds.MS.gene074125.t1;Parent=MS.gene074125.t1
chr6.1 exon 6637347 6637702 6637347 ID=MS.gene074125.t1.exon4;Parent=MS.gene074125.t1
chr6.1 CDS 6637347 6637702 6637347 ID=cds.MS.gene074125.t1;Parent=MS.gene074125.t1
Gene Sequence

>MS.gene074125

ATGGCAGAAGCTTCATCCACTAACAACGGTCTTAGGTTAGCCGGCAAAGTAGCCATCGTCACCGGAGGTGCCAGTGGCATTGGCAAAGAGACGGCGCATCTCTTTGCCGATCAAGGTGCACGCATGGTGGTGATAGCTGACATTCAAGACGAGTTGGGCAATCAAGTGGCTGCATCCATTGGCGGCCACAGGAGCACCTTCATCCATTGTGACATAGCAAATGAAGATCAAGTAAAAAATCTCATTCAATCAACGGTCAATGCTTATGGACAGGTAAAAATTAACTAGGGTTAAATATATGTTTTGTTCCTACGTGTATTATGAAATTTTGTCTTTAGTCTCTATGAAAAAAATAGCACTTATGTTTGTGTTTATACAAATGTCTTACGTTGTCATGTTAATGTTGTTTTAACATGTTTAAATTTTTCATTTCCCAAAAAACTTCAAATTCTTCAATGATTTTTTTACAGCTATGTATATTTAGCACATTATAAAAAGTTCATTAACAAAAATTTAAATTTTTTAACATGAGATGAATCAAATATAAATTATTTCAACTTCAAAAGTTTAAGATAAAAGTAACCATAATTTCTACATTATAATGTGCTAAACACGCATACAAATAAGCACTAAAAAATTTAAATAGACTTACCAGCAGAGACTAATTAAAGTTACTGATAGTATAATTTTGTAGGAACTAAAAGTTGACGAAAAAAATATAGAGAAAATAAAAAATAAAATAAATTTTTTTATAGGGTGTAAAAACACATATAACCCCGTTTACTATATAAGACTTTATTTATAGTTTACATTATCAAGATTTTTCTAATGTAAAACAATGTAAAGATAAATATATGATTAAAATCAATAACTTTTTCTTTCTTTTCCTAAAAAACAACTTTTTCTTTCTTTTCCACAACAGGTAGATATTATGTTTAGCAATGCTGGGATTGCAAGTCCATCTGATCAGACTATTTTGGAACTCGACATTTCTCAAGCTGACCATGTGTTTGCAGTTAACATTCGAGGAACGACATTGTGCGTGAAATACGCGGCGCGTGCAATGGTGGAGGGGCGCGTGAGGGGTAGCATTGTGTGCACAGCGAGCGTCCTGGGTAGCGTAGGTGTCTTGAGGTTAACAGATTACACAATATCGAAGCATGCAATAATAGGGTTGATGCGCTCGGCGAGTGTGCAACTTGCCAAATATGGGATAAGGGTGAATTGTGTCTCGCCAAATGGATTAGCAACACCATTGACTATGAGATTGTTAGGGGCGAGTACTAAGACAGTCGAGCTGATTTATGAACAAAACAAGAGGTTGGAAGGAGTGGTTCTTAACACTAAACATGTGGCAGATGCTGTGTTGTTCTTGGTATCTAATGAATCTGACTTTGTCACTGGCATTGATCTTCGTGTGGATGGCAGCTATGTTTATAGTAAATATGAACTTTTATAAATAAATAAAAATGTTTGTACTTATATTGAATTTATTTGAAGGATAAAAAAATTCCTCACACTTCTAGGTGGAGTGTTAGAGGTGTATGGAGTGAGGTATATAAAATAAATGTAATAAATAAATAAAAATTAAACTATATCATGGGCTTTGGACCCATTTATTTAATATAATTTTTTAAGTGGAGTTTGAGACAAGTGAAAAGATATTGTGCTTTCATAGCTACTTTTTCTATAATCACCTGTATTTTTCACTCTACAATGAAGGTGTTTATATTAGTTGATAGTACTAAGTAGAAGAAACAGCCATTATCTAAATAGTTTTAAGACTGAATTAAAATTAAAATGTGTCGTGCATGTTGCCTTTGGTTCATTATAAGTATAAATTGATTTCAAATAAAATAATTTATCTAAAATTGAATTGAATTGAATTTAAAGTTATTTATGTGATTTATGTATGACATTTAAATTCACTCAATGTGAGTTTAATTGTTTACTTTTTAATTCAAAAGGTGAGATAAATCTTGCATTATGCACAAGGTTGTTTCTACTATTTGATAAATAAATATCACCATTAAATTAAATAAATGTCAATTATGTTATGTGATGCACAAACGAGACAAATATTACATCTTACACAAACTAGTTTTCACTATTGGATCAATAAATCTCACGATTAAATTAATATGATGTGAGTTATTGATCTAGTGGTAAACAAGACACTTATGTATGGTGTGAGACCATTTTGTTTGCGCATGTTAGACAAAGTCTTAAACGAATCAGGAAAATACTCATTGGTCAAATGGTGAAAAATTAATTTATGCATTCTGAAAAATTAAAAGATATAGTTTTTTTTTTAACATCAAATTTATTATTAAGAAGAGAAGTACAAATAGTATTAAACTCATAACTCAGAAAAAGTACAAGTAGTACTCAGCCTACTTTAAATAAACAAACACGGTACACCAAGAAGTAAGACATATAAGAGGGTTCAAATGACCTTACTTCACATTTCCTAAATTTTTTAGATTGTTGCATGTCAAATAAATGTTAAGCTTTTCTGATACTTCTTGGTCAGAGAAGAGGGATAAAAAATAATCTATGAGAGAAACCACATTTTTGGATATGATTAGCCTTGTTCAAACACACTTACAAATCAAATACTAAATCTTACTAACAAAACTACATCTACAATACAAGTGGTCCTCCTCCTTTATGGTCCCTAAACGTGAAACACATTCAAACTAGATCCAACCAACAACACTCCTCTTCTAAATAAAAGTCCCCCCCAGATAGAAAGTCTACCAAGAATTAATGCCAAAAGAAAATTTGAACCCTTTGTAGGATCAAACTATTTCATTTTCCCTTTAGACCCCTTCTAGACGTCGTGTTCAAATCAAAGATAAGAATTAAAAGATATAGTAATGAAATTCAAAGAAAAAAATCACTTATTTAAAGAAAATAAGTTAAAGATAAATATAAAATGATGCAAAAATTATACAAACATGAAAATTCAAACTCATTTTGATAATTATGCAACCAAAAACAATCATGTTAAAATCACTTTTAATCCCAGTGATCATTAGTCTTCTTAATCTATATACTAACAGCAAAGACATGTCATATTCGACATGTACCACGTGGAGAGAAACATAGCAACACGAGACAATAATTTGAAAAACAAATATCCAAACACAAATATCCGTAGTTTTCAAATTAAAATATGTCCCACTTTCCACTATCATCACATCACCTACTATAAATATTAGGCTAAAGTGCAATTTTGGCCCCCTATCTTTCAAAAAGTTGCGATTTTGATCCCCTAAATATGAAAACTACAATTTTGGCCCCCTAAGATTTAGCCCCTTTGCATATTTGGTCTTTTTGATCAATTTTGACCAAGTCAACGCATACGCGGCGTGCCACGTGTGTAATTAATTAATTAAAAAAATAAAAAAACGAAAAAATCAATTTTTAAATTAAATAAATGAAAAAAAAAATTAAAAAATCAGAAAAAAATAATAAACGTTTTCTCTTCTCTCTCCTTTCCTCTCTGATCTCCTCCTTTCTTTCTTCTTCTTTCTCCTCTCTCCACTAACAAATGAAGAACAACAACAACATACCCTCACCCCTCTATTTCATTTCATCACCAACAATTCTGGAACAGTTACCAATCCTCCTCTCTTCATCAGAATCCACCACCCACTCCTCTTCTCAACACCAATCGAAGGTATTGCTTTTTCTTTTATTTTATTTTACTAGGAAAAAAAACTATTAACTGCTTCATGAATTGATTTTAATTTTGATCTTTATTGGTAGAAATCAGAAACGGAAGCGATTCAGACGTGAATTCCGATGATGCTACGGAATACTACCAGCCAATATCCGCCATTGACGACGACGGAAGCTCAGACGGAGAAAACGCGGATGATTTCCATCAAATTCCGAACGGTTACACTGCACACGGTGGAGCGGAGAACGGGATCTCGACGCTTGATCTGAACGACGACGGGGTGAAGAGCAGCGACGAGGTGGAGGAAGAAGAGGAGAGAAGCGGAGAGGAAATTGAAAATGAGATTCAGAGAGCGTTGAGGGAAGAGGAGAGAAGAAGGATTGCATCGTTAAATACTAATAGATTAATAGATACACATGCGGATGAAATTAACCGGATTTAG

Protein sequence

>MS.gene074125.t1

MAEASSTNNGLRLAGKVAIVTGGASGIGKETAHLFADQGARMVVIADIQDELGNQVAASIGGHRSTFIHCDIANEDQVKNLIQSTVNAYGQVDIMFSNAGIASPSDQTILELDISQADHVFAVNIRGTTLCVKYAARAMVEGRVRGSIVCTASVLGSVGVLRLTDYTISKHAIIGLMRSASVQLAKYGIRVNCVSPNGLATPLTMRLLGASTKTVELIYEQNKRLEGVVLNTKHVADAVLFLVSNESDFVTGIDLRVDGSYVYKQQQHTLTPLFHFITNNSGTVTNPPLFIRIHHPLLFSTPIEEIRNGSDSDVNSDDATEYYQPISAIDDDGSSDGENADDFHQIPNGYTAHGGAENGISTLDLNDDGVKSSDEVEEEEERSGEEIENEIQRALREEERRRIASLNTNRLIDTHADEINRI