Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074219.t1 | XP_024641320.1 | 81.8 | 336 | 11 | 1 | 1 | 286 | 1 | 336 | 6.30E-145 | 523.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074219.t1 | Q9C942 | 37.6 | 255 | 146 | 4 | 39 | 286 | 84 | 332 | 6.8e-39 | 162.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074219.t1 | G7KMS8 | 79.5 | 346 | 11 | 1 | 1 | 286 | 1 | 346 | 6.5e-144 | 519.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049419 | MS.gene074219 | -0.811767 | 5.94E-51 | -1.69E-46 |
| MS.gene050105 | MS.gene074219 | 0.810253 | 1.26E-50 | -1.69E-46 |
| MS.gene051064 | MS.gene074219 | 0.819626 | 1.05E-52 | -1.69E-46 |
| MS.gene051122 | MS.gene074219 | 0.83085 | 2.33E-55 | -1.69E-46 |
| MS.gene053298 | MS.gene074219 | 0.825211 | 5.30E-54 | -1.69E-46 |
| MS.gene053963 | MS.gene074219 | 0.83588 | 1.30E-56 | -1.69E-46 |
| MS.gene054479 | MS.gene074219 | 0.831881 | 1.30E-55 | -1.69E-46 |
| MS.gene060850 | MS.gene074219 | 0.826533 | 2.58E-54 | -1.69E-46 |
| MS.gene060851 | MS.gene074219 | 0.843805 | 1.12E-58 | -1.69E-46 |
| MS.gene060852 | MS.gene074219 | 0.846483 | 2.11E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074219.t1 | MTR_6g018490 | 96.787 | 249 | 8 | 0 | 38 | 286 | 98 | 346 | 2.48e-180 | 500 |
| MS.gene074219.t1 | MTR_6g025610 | 95.984 | 249 | 10 | 0 | 38 | 286 | 88 | 336 | 8.10e-180 | 499 |
| MS.gene074219.t1 | MTR_7g007260 | 61.677 | 334 | 68 | 3 | 3 | 276 | 4 | 337 | 2.47e-140 | 399 |
| MS.gene074219.t1 | MTR_7g007260 | 58.683 | 334 | 65 | 4 | 3 | 276 | 4 | 324 | 6.04e-127 | 365 |
| MS.gene074219.t1 | MTR_7g007260 | 58.507 | 335 | 65 | 5 | 3 | 276 | 4 | 325 | 4.29e-125 | 360 |
| MS.gene074219.t1 | MTR_6g084420 | 64.228 | 246 | 87 | 1 | 38 | 282 | 98 | 343 | 2.71e-115 | 335 |
| MS.gene074219.t1 | MTR_1g110670 | 59.664 | 238 | 96 | 0 | 38 | 275 | 118 | 355 | 7.09e-105 | 310 |
| MS.gene074219.t1 | MTR_5g056550 | 56.667 | 240 | 104 | 0 | 38 | 277 | 152 | 391 | 3.01e-101 | 301 |
| MS.gene074219.t1 | MTR_1g088470 | 52.016 | 248 | 118 | 1 | 39 | 285 | 53 | 300 | 2.80e-86 | 261 |
| MS.gene074219.t1 | MTR_7g108770 | 47.222 | 252 | 125 | 1 | 42 | 285 | 55 | 306 | 1.36e-82 | 252 |
| MS.gene074219.t1 | MTR_5g056550 | 48.750 | 240 | 90 | 1 | 38 | 277 | 152 | 358 | 2.83e-79 | 244 |
| MS.gene074219.t1 | MTR_1g115535 | 48.971 | 243 | 124 | 0 | 40 | 282 | 56 | 298 | 5.91e-78 | 239 |
| MS.gene074219.t1 | MTR_1g115535 | 48.971 | 243 | 124 | 0 | 40 | 282 | 60 | 302 | 7.21e-78 | 239 |
| MS.gene074219.t1 | MTR_4g089170 | 42.489 | 233 | 134 | 0 | 43 | 275 | 89 | 321 | 1.21e-65 | 208 |
| MS.gene074219.t1 | MTR_4g127220 | 38.400 | 250 | 141 | 4 | 39 | 281 | 75 | 318 | 3.19e-51 | 171 |
| MS.gene074219.t1 | MTR_1g095110 | 35.798 | 257 | 160 | 5 | 30 | 284 | 69 | 322 | 1.06e-47 | 162 |
| MS.gene074219.t1 | MTR_5g056550 | 65.263 | 95 | 33 | 0 | 38 | 132 | 152 | 246 | 1.19e-41 | 145 |
| MS.gene074219.t1 | MTR_5g056550 | 64.894 | 94 | 33 | 0 | 38 | 131 | 152 | 245 | 1.21e-40 | 141 |
| MS.gene074219.t1 | MTR_6g071475 | 36.777 | 242 | 137 | 7 | 39 | 275 | 158 | 388 | 5.12e-37 | 135 |
| MS.gene074219.t1 | MTR_3g109870 | 32.377 | 244 | 130 | 8 | 39 | 276 | 139 | 353 | 1.64e-27 | 109 |
| MS.gene074219.t1 | MTR_1g110680 | 38.144 | 97 | 56 | 1 | 179 | 275 | 10 | 102 | 1.45e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074219.t1 | AT5G16120 | 67.901 | 243 | 78 | 0 | 38 | 280 | 100 | 342 | 6.84e-126 | 363 |
| MS.gene074219.t1 | AT5G16120 | 67.901 | 243 | 78 | 0 | 38 | 280 | 100 | 342 | 6.84e-126 | 363 |
| MS.gene074219.t1 | AT5G16120 | 67.901 | 243 | 78 | 0 | 38 | 280 | 132 | 374 | 7.39e-126 | 363 |
| MS.gene074219.t1 | AT5G16120 | 67.901 | 243 | 78 | 0 | 38 | 280 | 118 | 360 | 1.05e-125 | 363 |
| MS.gene074219.t1 | AT1G77420 | 55.882 | 238 | 105 | 0 | 38 | 275 | 139 | 376 | 1.23e-97 | 292 |
| MS.gene074219.t1 | AT3G62860 | 51.055 | 237 | 116 | 0 | 42 | 278 | 13 | 249 | 1.03e-86 | 261 |
| MS.gene074219.t1 | AT3G62860 | 51.055 | 237 | 116 | 0 | 42 | 278 | 56 | 292 | 4.80e-86 | 261 |
| MS.gene074219.t1 | AT2G47630 | 53.419 | 234 | 109 | 0 | 42 | 275 | 13 | 246 | 1.04e-84 | 256 |
| MS.gene074219.t1 | AT2G47630 | 52.697 | 241 | 112 | 1 | 35 | 275 | 28 | 266 | 1.30e-84 | 257 |
| MS.gene074219.t1 | AT2G47630 | 53.419 | 234 | 109 | 0 | 42 | 275 | 58 | 291 | 5.25e-84 | 256 |
| MS.gene074219.t1 | AT2G39420 | 49.789 | 237 | 119 | 0 | 40 | 276 | 57 | 293 | 6.15e-81 | 247 |
| MS.gene074219.t1 | AT2G39400 | 48.148 | 243 | 126 | 0 | 40 | 282 | 51 | 293 | 9.76e-77 | 236 |
| MS.gene074219.t1 | AT2G39410 | 46.444 | 239 | 128 | 0 | 40 | 278 | 57 | 295 | 1.33e-75 | 233 |
| MS.gene074219.t1 | AT3G55180 | 47.280 | 239 | 126 | 0 | 40 | 278 | 52 | 290 | 1.36e-72 | 226 |
| MS.gene074219.t1 | AT1G11090 | 44.255 | 235 | 131 | 0 | 43 | 277 | 80 | 314 | 5.27e-70 | 219 |
| MS.gene074219.t1 | AT3G55190 | 43.673 | 245 | 133 | 2 | 31 | 274 | 52 | 292 | 1.39e-63 | 202 |
| MS.gene074219.t1 | AT5G14980 | 38.397 | 237 | 144 | 2 | 43 | 278 | 81 | 316 | 1.41e-55 | 182 |
| MS.gene074219.t1 | AT5G19290 | 37.339 | 233 | 144 | 2 | 43 | 274 | 82 | 313 | 1.93e-52 | 174 |
| MS.gene074219.t1 | AT1G52760 | 37.647 | 255 | 146 | 4 | 39 | 286 | 84 | 332 | 3.11e-51 | 171 |
| MS.gene074219.t1 | AT2G39400 | 46.629 | 178 | 95 | 0 | 40 | 217 | 51 | 228 | 7.99e-49 | 162 |
| MS.gene074219.t1 | AT1G73480 | 36.364 | 242 | 142 | 6 | 39 | 277 | 230 | 462 | 5.68e-39 | 142 |
| MS.gene074219.t1 | AT5G11650 | 35.124 | 242 | 139 | 8 | 39 | 274 | 146 | 375 | 2.06e-35 | 131 |
| MS.gene074219.t1 | AT1G18360 | 33.607 | 244 | 146 | 6 | 39 | 277 | 149 | 381 | 2.45e-33 | 125 |
| MS.gene074219.t1 | AT5G11650 | 33.125 | 160 | 94 | 6 | 39 | 193 | 146 | 297 | 2.05e-16 | 78.2 |
Find 48 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTAAGTACCTTTGATTT+TGG | 0.137143 | 6.2:-14597004 | None:intergenic |
| CATCAGACTCACCCTCAATT+AGG | 0.237730 | 6.2:-14598307 | None:intergenic |
| CTACCATTATTCATTCTTCA+TGG | 0.264378 | 6.2:+14598182 | MS.gene074219:CDS |
| TTCTTGGTGACATCATTTCT+TGG | 0.299252 | 6.2:+14598345 | MS.gene074219:CDS |
| GAAACAATAGTTCAAATTCT+TGG | 0.314715 | 6.2:+14598329 | MS.gene074219:CDS |
| GCTATGGATTATCCAGGATT+TGG | 0.314731 | 6.2:+14596910 | MS.gene074219:CDS |
| ATCAGACTCACCCTCAATTA+GGG | 0.336116 | 6.2:-14598306 | None:intergenic |
| GGTCTTTCAGAAGGTCTTCA+TGG | 0.347967 | 6.2:+14596931 | MS.gene074219:CDS |
| AAACTTGCATCATGCGGATA+TGG | 0.356929 | 6.2:+14596880 | MS.gene074219:CDS |
| ATCGCACCATTCCATGCTTT+AGG | 0.379419 | 6.2:-14597437 | None:intergenic |
| TCTCCATGAAGAATGAATAA+TGG | 0.413485 | 6.2:-14598185 | None:intergenic |
| GTCGGGACCATCTTATTCTT+CGG | 0.425573 | 6.2:-14597631 | None:intergenic |
| CAAACCTGTTCCCTCTTCTT+CGG | 0.431010 | 6.2:-14597685 | None:intergenic |
| TGTGTAGATTTCAGAGCAAA+TGG | 0.435653 | 6.2:+14597558 | MS.gene074219:intron |
| AGAAAGATGAAGAGGTTACC+AGG | 0.454554 | 6.2:+14594448 | None:intergenic |
| CTATAACGTTATTAGTTACA+AGG | 0.464116 | 6.2:+14597828 | MS.gene074219:CDS |
| TACAATGCTTTGCTCACTGA+TGG | 0.467237 | 6.2:-14598227 | None:intergenic |
| GCAAATGGTTCCACCAAAGT+TGG | 0.494646 | 6.2:+14597573 | MS.gene074219:CDS |
| CCAGGATTTGGTCTTTCAGA+AGG | 0.502384 | 6.2:+14596922 | MS.gene074219:CDS |
| TGCTCAACATGCCCTAATTG+AGG | 0.503834 | 6.2:+14598295 | MS.gene074219:CDS |
| CTTATTCTTCGGAAGAACAT+TGG | 0.509068 | 6.2:-14597620 | None:intergenic |
| ATGGTCCCGACACAGGATAT+AGG | 0.516637 | 6.2:+14597643 | MS.gene074219:CDS |
| TCAACAAGCTGATCAAAACT+TGG | 0.517735 | 6.2:-14596961 | None:intergenic |
| AGATCCGAAGAAGAGGGAAC+AGG | 0.520539 | 6.2:+14597681 | MS.gene074219:CDS |
| CCTTCTGAAAGACCAAATCC+TGG | 0.529189 | 6.2:-14596922 | None:intergenic |
| CATCTCCTATATCCTGTGTC+GGG | 0.529204 | 6.2:-14597648 | None:intergenic |
| GCTCAACATGCCCTAATTGA+GGG | 0.530025 | 6.2:+14598296 | MS.gene074219:CDS |
| TGTTAAAATGCTAATTGCTA+TGG | 0.532325 | 6.2:+14597597 | MS.gene074219:CDS |
| GCATCTCCTATATCCTGTGT+CGG | 0.533074 | 6.2:-14597649 | None:intergenic |
| CATGGAAGAGAATTGAACTC+TGG | 0.541050 | 6.2:-14597356 | None:intergenic |
| AGAGAGAGAGAAAGATGAAG+AGG | 0.543583 | 6.2:+14594440 | None:intergenic |
| TGCAATTCATCATCAACCCC+TGG | 0.546322 | 6.2:-14594466 | None:intergenic |
| TCACGAGCTTGTCTTCTAGC+AGG | 0.549660 | 6.2:-14594520 | None:intergenic |
| CATTCAAAGATCCGAAGAAG+AGG | 0.560078 | 6.2:+14597674 | MS.gene074219:CDS |
| GAAAGATGAAGAGGTTACCA+GGG | 0.569912 | 6.2:+14594449 | None:intergenic |
| TCTACAGCAGTCCGCAGGCG+TGG | 0.573560 | 6.2:-14597856 | None:intergenic |
| GCAGTTCTACAGCAGTCCGC+AGG | 0.575669 | 6.2:-14597861 | None:intergenic |
| GAATAAGATGGTCCCGACAC+AGG | 0.586122 | 6.2:+14597636 | MS.gene074219:CDS |
| GAACAGTACTCCAAAATCAA+AGG | 0.588011 | 6.2:+14596994 | MS.gene074219:CDS |
| TGTTCTTCCGAAGAATAAGA+TGG | 0.590037 | 6.2:+14597624 | MS.gene074219:CDS |
| TGCTAGAAGACAAGCTCGTG+AGG | 0.606036 | 6.2:+14594522 | MS.gene074219:CDS |
| AAACAACCTAAAGCATGGAA+TGG | 0.608006 | 6.2:+14597431 | MS.gene074219:CDS |
| ATTCAAAGATCCGAAGAAGA+GGG | 0.610929 | 6.2:+14597675 | MS.gene074219:CDS |
| AGAAAATGTACTTTACACAT+CGG | 0.615088 | 6.2:-14597470 | None:intergenic |
| GCTAGAAAACTTGCATCATG+CGG | 0.626869 | 6.2:+14596874 | MS.gene074219:CDS |
| ACTTGAAACAACCTAAAGCA+TGG | 0.648914 | 6.2:+14597426 | MS.gene074219:CDS |
| AAAGATGAAGAGGTTACCAG+GGG | 0.694425 | 6.2:+14594450 | None:intergenic |
| ACAAGGATAAACCACGCCTG+CGG | 0.714990 | 6.2:+14597845 | MS.gene074219:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTGTAAAATAATTGT+AGG | - | chr6.2:14595479-14595498 | None:intergenic | 10.0% |
| !! | ATTATTTAAATGTAATTGTT+TGG | - | chr6.2:14594890-14594909 | None:intergenic | 10.0% |
| !! | TAAATACCTTAAATAATATA+TGG | - | chr6.2:14594576-14594595 | None:intergenic | 10.0% |
| !!! | AAATTTTAATGCTAAAATAA+AGG | - | chr6.2:14595719-14595738 | None:intergenic | 10.0% |
| !!! | TTTTATTGAATTTTTAAAGT+TGG | + | chr6.2:14594683-14594702 | MS.gene074219:intron | 10.0% |
| !! | TATTGACCATATATTATTTA+AGG | + | chr6.2:14594567-14594586 | MS.gene074219:intron | 15.0% |
| !! | AATGCTAAAATAAAGGATTA+AGG | - | chr6.2:14595712-14595731 | None:intergenic | 20.0% |
| !! | GATACAATCTTAAAATTTCA+AGG | + | chr6.2:14596211-14596230 | MS.gene074219:intron | 20.0% |
| !! | GTAAATAGTTTACTTTGAAT+TGG | + | chr6.2:14595901-14595920 | MS.gene074219:intron | 20.0% |
| !! | TAAAATTTCAAGGATCAAAT+AGG | + | chr6.2:14596221-14596240 | MS.gene074219:intron | 20.0% |
| !! | TTTAGTGTAATTATATGTGT+CGG | + | chr6.2:14596736-14596755 | MS.gene074219:intron | 20.0% |
| !!! | ATTCACATTTTGCAATTTTA+AGG | + | chr6.2:14596152-14596171 | MS.gene074219:intron | 20.0% |
| !!! | TAGACTTTTATAATAGCTTA+CGG | - | chr6.2:14597991-14598010 | None:intergenic | 20.0% |
| !!! | TTAGACTATTGATAATTTGA+AGG | + | chr6.2:14596180-14596199 | MS.gene074219:intron | 20.0% |
| ! | AACTAAATTGAGTTATCTTG+TGG | + | chr6.2:14596805-14596824 | MS.gene074219:intron | 25.0% |
| ! | AATAACAAAGGACAATGATA+AGG | - | chr6.2:14596441-14596460 | None:intergenic | 25.0% |
| ! | AGAAAATGTACTTTACACAT+CGG | - | chr6.2:14597473-14597492 | None:intergenic | 25.0% |
| ! | CATGTAATGACTATGTTTAT+AGG | + | chr6.2:14598154-14598173 | MS.gene074219:intron | 25.0% |
| ! | CTATAACGTTATTAGTTACA+AGG | + | chr6.2:14597828-14597847 | MS.gene074219:CDS | 25.0% |
| ! | GAAACAATAGTTCAAATTCT+TGG | + | chr6.2:14598329-14598348 | MS.gene074219:CDS | 25.0% |
| ! | GAAGATATTGAATGCAAAAA+TGG | + | chr6.2:14594489-14594508 | MS.gene074219:CDS | 25.0% |
| ! | GATAATAGAAAATGTGTTGT+TGG | - | chr6.2:14595437-14595456 | None:intergenic | 25.0% |
| ! | TATTAAGTGTGAGAGTTAAT+TGG | + | chr6.2:14595540-14595559 | MS.gene074219:intron | 25.0% |
| ! | TGTTAAAATGCTAATTGCTA+TGG | + | chr6.2:14597597-14597616 | MS.gene074219:CDS | 25.0% |
| !! | AAAGGTTTGGTTTATTTGTA+TGG | + | chr6.2:14597325-14597344 | MS.gene074219:intron | 25.0% |
| !! | AATTGGTTTATCAGTAAACA+TGG | + | chr6.2:14595557-14595576 | MS.gene074219:intron | 25.0% |
| !! | AATTTTCTTGTTACACTCTT+TGG | + | chr6.2:14597953-14597972 | MS.gene074219:intron | 25.0% |
| !! | ACCTTTTGTAGTATTTAATG+TGG | + | chr6.2:14595648-14595667 | MS.gene074219:intron | 25.0% |
| !! | AGTAATGATTGATGATACTA+AGG | + | chr6.2:14597292-14597311 | MS.gene074219:intron | 25.0% |
| !! | CAATTTTTGTTCGATTTCTT+CGG | - | chr6.2:14597896-14597915 | None:intergenic | 25.0% |
| !!! | ACTTTTGATGCGTTATTTTT+TGG | + | chr6.2:14597745-14597764 | MS.gene074219:intron | 25.0% |
| !!! | GTTTCTAGCTATTTAATGAT+AGG | + | chr6.2:14595156-14595175 | MS.gene074219:intron | 25.0% |
| !!! | TAGTACATTGACTTTCATAT+TGG | + | chr6.2:14595061-14595080 | MS.gene074219:intron | 25.0% |
| !!! | TTGAATTTTTAAAGTTGGTC+TGG | + | chr6.2:14594688-14594707 | MS.gene074219:intron | 25.0% |
| !!! | TTTCTTTTTGGAGAATCTAT+GGG | + | chr6.2:14597380-14597399 | MS.gene074219:CDS | 25.0% |
| AAAAGTCTATCTTCACGTTA+AGG | + | chr6.2:14598002-14598021 | MS.gene074219:intron | 30.0% | |
| AAATAGCTAGAAACTAGAAC+AGG | - | chr6.2:14595150-14595169 | None:intergenic | 30.0% | |
| AACTCAATCATGTGTTACAT+TGG | + | chr6.2:14596834-14596853 | MS.gene074219:intron | 30.0% | |
| ACATATGCACATAAAACACA+TGG | - | chr6.2:14595219-14595238 | None:intergenic | 30.0% | |
| ACTCATATAACTTCAAGAAC+AGG | - | chr6.2:14595937-14595956 | None:intergenic | 30.0% | |
| CGAAGAAATCGAACAAAAAT+TGG | + | chr6.2:14597894-14597913 | MS.gene074219:CDS | 30.0% | |
| CTACCATTATTCATTCTTCA+TGG | + | chr6.2:14598182-14598201 | MS.gene074219:CDS | 30.0% | |
| CTTATGAGGTAAACTCAAAA+GGG | + | chr6.2:14596503-14596522 | MS.gene074219:intron | 30.0% | |
| GAAAGAAAATTAGCGCAAAA+AGG | - | chr6.2:14597722-14597741 | None:intergenic | 30.0% | |
| GCCACATTAAATACTACAAA+AGG | - | chr6.2:14595652-14595671 | None:intergenic | 30.0% | |
| TAATCACATGTATGTAACCA+AGG | - | chr6.2:14594821-14594840 | None:intergenic | 30.0% | |
| TATAGACAAAGCAGTATAAG+AGG | - | chr6.2:14598051-14598070 | None:intergenic | 30.0% | |
| TCTCCATGAAGAATGAATAA+TGG | - | chr6.2:14598188-14598207 | None:intergenic | 30.0% | |
| TCTTATGAGGTAAACTCAAA+AGG | + | chr6.2:14596502-14596521 | MS.gene074219:intron | 30.0% | |
| TGAAAACAGCTCATAATCTT+AGG | + | chr6.2:14597189-14597208 | MS.gene074219:intron | 30.0% | |
| TGCATCACATCACATTATTT+GGG | + | chr6.2:14595739-14595758 | MS.gene074219:intron | 30.0% | |
| TTATTAGTGATGTCTATGTG+TGG | - | chr6.2:14596324-14596343 | None:intergenic | 30.0% | |
| TTCATTTCTAATCCATCACA+TGG | - | chr6.2:14595877-14595896 | None:intergenic | 30.0% | |
| TTGCATCACATCACATTATT+TGG | + | chr6.2:14595738-14595757 | MS.gene074219:intron | 30.0% | |
| ! | AAACACATGGAGAATTTTCT+TGG | - | chr6.2:14595206-14595225 | None:intergenic | 30.0% |
| ! | GGTATTTATGTCTTTGCTTT+TGG | + | chr6.2:14594588-14594607 | MS.gene074219:intron | 30.0% |
| ! | GTATTTTTCTGTCATGGATA+TGG | + | chr6.2:14596580-14596599 | MS.gene074219:intron | 30.0% |
| ! | TATGGTGTTAGAGTTTATGA+TGG | - | chr6.2:14595282-14595301 | None:intergenic | 30.0% |
| ! | TGGTTATGTACTAGACATTT+TGG | + | chr6.2:14595577-14595596 | MS.gene074219:intron | 30.0% |
| ! | TTGACTTTCATATTGGTAGT+TGG | + | chr6.2:14595068-14595087 | MS.gene074219:intron | 30.0% |
| !! | AAAGGTACTTAGGTTCTATT+TGG | + | chr6.2:14597012-14597031 | MS.gene074219:intron | 30.0% |
| !! | AACCTAAGTACCTTTGATTT+TGG | - | chr6.2:14597007-14597026 | None:intergenic | 30.0% |
| !! | AGCATTTTAACAACCAACTT+TGG | - | chr6.2:14597589-14597608 | None:intergenic | 30.0% |
| !! | ATGTTGTTTCAAAGCCAATT+GGG | + | chr6.2:14595373-14595392 | MS.gene074219:intron | 30.0% |
| !! | ATTTTAACAACCAACTTTGG+TGG | - | chr6.2:14597586-14597605 | None:intergenic | 30.0% |
| !! | CTTCTTGAGTTTTTGTTTCT+GGG | + | chr6.2:14594733-14594752 | MS.gene074219:intron | 30.0% |
| !! | CTTTCTTTTTGGAGAATCTA+TGG | + | chr6.2:14597379-14597398 | MS.gene074219:CDS | 30.0% |
| !! | TACTAAGGTATTGATGCAAA+AGG | + | chr6.2:14597307-14597326 | MS.gene074219:intron | 30.0% |
| !! | TCTTCTTGAGTTTTTGTTTC+TGG | + | chr6.2:14594732-14594751 | MS.gene074219:intron | 30.0% |
| !! | TGATGGATTAGAAATGAAAG+AGG | + | chr6.2:14595879-14595898 | MS.gene074219:intron | 30.0% |
| !! | TTGAGATCTTTTGGAAAAGT+TGG | + | chr6.2:14596527-14596546 | MS.gene074219:intron | 30.0% |
| !!! | ACTTGCACTTTTTTCTTTGA+AGG | + | chr6.2:14596607-14596626 | MS.gene074219:intron | 30.0% |
| !!! | GTTTTTTTAGTGCACCAAAT+TGG | + | chr6.2:14594778-14594797 | MS.gene074219:intron | 30.0% |
| !!! | TTCCGGTCTGTAATTTTTTT+GGG | + | chr6.2:14595326-14595345 | MS.gene074219:intron | 30.0% |
| AAACAACCTAAAGCATGGAA+TGG | + | chr6.2:14597431-14597450 | MS.gene074219:CDS | 35.0% | |
| AAACAGCTCATAATCTTAGG+CGG | + | chr6.2:14597192-14597211 | MS.gene074219:intron | 35.0% | |
| ACATAATACGTCGATAATGC+AGG | - | chr6.2:14598083-14598102 | None:intergenic | 35.0% | |
| ACTTGAAACAACCTAAAGCA+TGG | + | chr6.2:14597426-14597445 | MS.gene074219:CDS | 35.0% | |
| AGAAAATTAGCGCAAAAAGG+AGG | - | chr6.2:14597719-14597738 | None:intergenic | 35.0% | |
| AGTCCTAGTAAATATCAACG+AGG | - | chr6.2:14596034-14596053 | None:intergenic | 35.0% | |
| ATTCAAAGATCCGAAGAAGA+GGG | + | chr6.2:14597675-14597694 | MS.gene074219:CDS | 35.0% | |
| CACATATATCGAACACAACA+CGG | - | chr6.2:14594954-14594973 | None:intergenic | 35.0% | |
| CACATCACATTATTTGGGAA+GGG | + | chr6.2:14595744-14595763 | MS.gene074219:intron | 35.0% | |
| CGATGTTGTTGATATAACCT+TGG | + | chr6.2:14594801-14594820 | MS.gene074219:intron | 35.0% | |
| CGATTGTTACATTACAGTTC+CGG | + | chr6.2:14595309-14595328 | MS.gene074219:intron | 35.0% | |
| CTAGTATCTGACACATATTG+CGG | + | chr6.2:14594857-14594876 | MS.gene074219:intron | 35.0% | |
| CTATAATGTAACGATTGAGG+AGG | + | chr6.2:14595350-14595369 | MS.gene074219:intron | 35.0% | |
| CTTATTCTTCGGAAGAACAT+TGG | - | chr6.2:14597623-14597642 | None:intergenic | 35.0% | |
| GAACAGTACTCCAAAATCAA+AGG | + | chr6.2:14596994-14597013 | MS.gene074219:CDS | 35.0% | |
| GAACTGTAATGTAACAATCG+AGG | - | chr6.2:14595309-14595328 | None:intergenic | 35.0% | |
| GATTCTCCAAAAAGAAAGCA+TGG | - | chr6.2:14597377-14597396 | None:intergenic | 35.0% | |
| GGACTATAATGACGTTAAGT+TGG | + | chr6.2:14596049-14596068 | MS.gene074219:intron | 35.0% | |
| GGACTATAATGTAACGATTG+AGG | + | chr6.2:14595347-14595366 | MS.gene074219:intron | 35.0% | |
| GTCCCAAAAAAATTACAGAC+CGG | - | chr6.2:14595331-14595350 | None:intergenic | 35.0% | |
| GTCCTAGTAAATATCAACGA+GGG | - | chr6.2:14596033-14596052 | None:intergenic | 35.0% | |
| GTTACATTGGAAACATTTGC+AGG | + | chr6.2:14596847-14596866 | MS.gene074219:intron | 35.0% | |
| TAAGCTATGAAGCATGGATA+CGG | + | chr6.2:14596663-14596682 | MS.gene074219:intron | 35.0% | |
| TACTTATAGCCTATGAAGCA+CGG | - | chr6.2:14596786-14596805 | None:intergenic | 35.0% | |
| TAGCTATAAGCTATGAAGCA+TGG | + | chr6.2:14596657-14596676 | MS.gene074219:intron | 35.0% | |
| TATCAACAACATCGCCAATT+TGG | - | chr6.2:14594795-14594814 | None:intergenic | 35.0% | |
| TCAACAAGCTGATCAAAACT+TGG | - | chr6.2:14596964-14596983 | None:intergenic | 35.0% | |
| TCACATCACATTATTTGGGA+AGG | + | chr6.2:14595743-14595762 | MS.gene074219:intron | 35.0% | |
| TCCTAGTAAATATCAACGAG+GGG | - | chr6.2:14596032-14596051 | None:intergenic | 35.0% | |
| TGAAATCTACACAAAGTTGC+AGG | - | chr6.2:14597551-14597570 | None:intergenic | 35.0% | |
| TGTAACAATCGAGGAGAATA+TGG | - | chr6.2:14595300-14595319 | None:intergenic | 35.0% | |
| TGTGTAGATTTCAGAGCAAA+TGG | + | chr6.2:14597558-14597577 | MS.gene074219:intron | 35.0% | |
| TGTTCGCAGATGAACTTAAT+AGG | + | chr6.2:14596107-14596126 | MS.gene074219:intron | 35.0% | |
| TGTTCTTCCGAAGAATAAGA+TGG | + | chr6.2:14597624-14597643 | MS.gene074219:CDS | 35.0% | |
| TTGAAACTTGAAAGAGAGAG+AGG | + | chr6.2:14595123-14595142 | MS.gene074219:intron | 35.0% | |
| ! | ACATTTTACAACAGTCTTCG+AGG | - | chr6.2:14597232-14597251 | None:intergenic | 35.0% |
| ! | ACTTTCATATTGGTAGTTGG+TGG | + | chr6.2:14595071-14595090 | MS.gene074219:intron | 35.0% |
| ! | ATTTTACAACAGTCTTCGAG+GGG | - | chr6.2:14597230-14597249 | None:intergenic | 35.0% |
| ! | CAAAAGGGATTGAGATCTTT+TGG | + | chr6.2:14596518-14596537 | MS.gene074219:intron | 35.0% |
| ! | CATTTTACAACAGTCTTCGA+GGG | - | chr6.2:14597231-14597250 | None:intergenic | 35.0% |
| ! | CATTTTCTCAAACTCAGTCA+TGG | + | chr6.2:14597485-14597504 | MS.gene074219:intron | 35.0% |
| ! | TCTCTTCCATGCTTTCTTTT+TGG | + | chr6.2:14597368-14597387 | MS.gene074219:CDS | 35.0% |
| ! | TGCTATGAAACAGTCTTATG+AGG | + | chr6.2:14596489-14596508 | MS.gene074219:intron | 35.0% |
| ! | TGTGTCTGTGTCATAGTTTT+AGG | + | chr6.2:14594970-14594989 | MS.gene074219:intron | 35.0% |
| ! | TTCTTGGTGACATCATTTCT+TGG | + | chr6.2:14598345-14598364 | MS.gene074219:CDS | 35.0% |
| ! | TTTCTTTGAAGGCATGTAAC+TGG | + | chr6.2:14596618-14596637 | MS.gene074219:intron | 35.0% |
| !! | AGGTATTGATGCAAAAGGTT+TGG | + | chr6.2:14597312-14597331 | MS.gene074219:intron | 35.0% |
| !! | AGGTTTGAGGTTTTAGTACA+AGG | + | chr6.2:14594990-14595009 | MS.gene074219:intron | 35.0% |
| !! | CTCCAAAATCAAAGGTACTT+AGG | + | chr6.2:14597002-14597021 | MS.gene074219:intron | 35.0% |
| !! | GATGTTGTTTCAAAGCCAAT+TGG | + | chr6.2:14595372-14595391 | MS.gene074219:intron | 35.0% |
| !! | GCTTTTAAGGATATTCAGCT+TGG | + | chr6.2:14594544-14594563 | MS.gene074219:CDS | 35.0% |
| !! | GGTTTTAGTACAAGGTTGTT+TGG | + | chr6.2:14594998-14595017 | MS.gene074219:intron | 35.0% |
| !! | GTTTTTGCTATGGATTATCC+AGG | + | chr6.2:14596904-14596923 | MS.gene074219:CDS | 35.0% |
| !!! | CAGAAAAATACTGCTGCTTT+TGG | - | chr6.2:14596571-14596590 | None:intergenic | 35.0% |
| !!! | GTGTCATAGTTTTAGGTTTG+AGG | + | chr6.2:14594977-14594996 | MS.gene074219:intron | 35.0% |
| !!! | GTTCCGGTCTGTAATTTTTT+TGG | + | chr6.2:14595325-14595344 | MS.gene074219:intron | 35.0% |
| AAACTTGCATCATGCGGATA+TGG | + | chr6.2:14596880-14596899 | MS.gene074219:CDS | 40.0% | |
| AACTTAATAGGTCCAGACAC+AGG | + | chr6.2:14596119-14596138 | MS.gene074219:intron | 40.0% | |
| ACCCTACGTAACCATATCAA+GGG | - | chr6.2:14595033-14595052 | None:intergenic | 40.0% | |
| ACGTTAAGGCGACACTTAAA+AGG | + | chr6.2:14598016-14598035 | MS.gene074219:intron | 40.0% | |
| ACTTAATAGGTCCAGACACA+GGG | + | chr6.2:14596120-14596139 | MS.gene074219:intron | 40.0% | |
| ATCAGACTCACCCTCAATTA+GGG | - | chr6.2:14598309-14598328 | None:intergenic | 40.0% | |
| CACATTATTTGGGAAGGGAA+TGG | + | chr6.2:14595749-14595768 | MS.gene074219:intron | 40.0% | |
| CATGGAAGAGAATTGAACTC+TGG | - | chr6.2:14597359-14597378 | None:intergenic | 40.0% | |
| CATTCAAAGATCCGAAGAAG+AGG | + | chr6.2:14597674-14597693 | MS.gene074219:CDS | 40.0% | |
| CGTTAAGGCGACACTTAAAA+GGG | + | chr6.2:14598017-14598036 | MS.gene074219:intron | 40.0% | |
| CTGGGAAGATTGCATTTAGT+TGG | + | chr6.2:14594751-14594770 | MS.gene074219:intron | 40.0% | |
| GCTAGAAAACTTGCATCATG+CGG | + | chr6.2:14596874-14596893 | MS.gene074219:CDS | 40.0% | |
| GGTACTTCTTACTCCTAAGA+GGG | + | chr6.2:14595092-14595111 | MS.gene074219:intron | 40.0% | |
| GTACTTCTTACTCCTAAGAG+GGG | + | chr6.2:14595093-14595112 | MS.gene074219:intron | 40.0% | |
| TACAATGCTTTGCTCACTGA+TGG | - | chr6.2:14598230-14598249 | None:intergenic | 40.0% | |
| TACTTCTTACTCCTAAGAGG+GGG | + | chr6.2:14595094-14595113 | MS.gene074219:intron | 40.0% | |
| TCCCTTGATATGGTTACGTA+GGG | + | chr6.2:14595029-14595048 | MS.gene074219:intron | 40.0% | |
| TGGTACTTCTTACTCCTAAG+AGG | + | chr6.2:14595091-14595110 | MS.gene074219:intron | 40.0% | |
| TGTTTCAAAGCCAATTGGGT+CGG | + | chr6.2:14595377-14595396 | MS.gene074219:intron | 40.0% | |
| TTATTAGCAGTGTCTGTGTC+CGG | - | chr6.2:14596698-14596717 | None:intergenic | 40.0% | |
| ! | AAGCTAGTCTGATGCACTTA+TGG | + | chr6.2:14597159-14597178 | MS.gene074219:intron | 40.0% |
| ! | CGGATATGGAGTTTTTGCTA+TGG | + | chr6.2:14596894-14596913 | MS.gene074219:CDS | 40.0% |
| ! | GCAGCAGTATTTTTCTGTCA+TGG | + | chr6.2:14596574-14596593 | MS.gene074219:intron | 40.0% |
| ! | GCTATGGATTATCCAGGATT+TGG | + | chr6.2:14596910-14596929 | MS.gene074219:CDS | 40.0% |
| ! | TGTATTGATACCGACCCAAT+TGG | - | chr6.2:14595390-14595409 | None:intergenic | 40.0% |
| ! | TTGGAAAAGTTGGCTTCCTA+AGG | + | chr6.2:14596537-14596556 | MS.gene074219:intron | 40.0% |
| !! | CTTTTTGGAGAATCTATGGG+TGG | + | chr6.2:14597383-14597402 | MS.gene074219:CDS | 40.0% |
| !!! | GCTTTTGGCTTAGATTCCTT+AGG | - | chr6.2:14596556-14596575 | None:intergenic | 40.0% |
| ACTTCAGACTGAACACGTCT+CGG | - | chr6.2:14596390-14596409 | None:intergenic | 45.0% | |
| ATCGCACCATTCCATGCTTT+AGG | - | chr6.2:14597440-14597459 | None:intergenic | 45.0% | |
| CAAACCTGTTCCCTCTTCTT+CGG | - | chr6.2:14597688-14597707 | None:intergenic | 45.0% | |
| CACCCTACGTAACCATATCA+AGG | - | chr6.2:14595034-14595053 | None:intergenic | 45.0% | |
| CATCAGACTCACCCTCAATT+AGG | - | chr6.2:14598310-14598329 | None:intergenic | 45.0% | |
| CATCTCCTATATCCTGTGTC+GGG | - | chr6.2:14597651-14597670 | None:intergenic | 45.0% | |
| CTTGATATGGTTACGTAGGG+TGG | + | chr6.2:14595032-14595051 | MS.gene074219:intron | 45.0% | |
| GCAAATGGTTCCACCAAAGT+TGG | + | chr6.2:14597573-14597592 | MS.gene074219:CDS | 45.0% | |
| GCATCTCCTATATCCTGTGT+CGG | - | chr6.2:14597652-14597671 | None:intergenic | 45.0% | |
| GCCCCTCGTTGATATTTACT+AGG | + | chr6.2:14596028-14596047 | MS.gene074219:intron | 45.0% | |
| GCTCAACATGCCCTAATTGA+GGG | + | chr6.2:14598296-14598315 | MS.gene074219:CDS | 45.0% | |
| GGAGATCATGTCCCTTGATA+TGG | + | chr6.2:14595019-14595038 | MS.gene074219:intron | 45.0% | |
| GGTCTTTCAGAAGGTCTTCA+TGG | + | chr6.2:14596931-14596950 | MS.gene074219:CDS | 45.0% | |
| GTCCCTTGATATGGTTACGT+AGG | + | chr6.2:14595028-14595047 | MS.gene074219:intron | 45.0% | |
| GTCGGGACCATCTTATTCTT+CGG | - | chr6.2:14597634-14597653 | None:intergenic | 45.0% | |
| TGCAATTCATCATCAACCCC+TGG | - | chr6.2:14594469-14594488 | None:intergenic | 45.0% | |
| TGCTCAACATGCCCTAATTG+AGG | + | chr6.2:14598295-14598314 | MS.gene074219:CDS | 45.0% | |
| ! | ACAAGCTCGTGAGGCTTTTA+AGG | + | chr6.2:14594531-14594550 | MS.gene074219:CDS | 45.0% |
| ! | ACGTGTTCAGTCTGAAGTGT+CGG | + | chr6.2:14596392-14596411 | MS.gene074219:intron | 45.0% |
| ! | CCAGGATTTGGTCTTTCAGA+AGG | + | chr6.2:14596922-14596941 | MS.gene074219:CDS | 45.0% |
| ! | CCTTCTGAAAGACCAAATCC+TGG | - | chr6.2:14596925-14596944 | None:intergenic | 45.0% |
| ! | GTTTTGCAGACTCCATGTGA+TGG | + | chr6.2:14595862-14595881 | MS.gene074219:intron | 45.0% |
| !! | CGGTGCTACATAGTTCATCA+AGG | + | chr6.2:14596412-14596431 | MS.gene074219:intron | 45.0% |
| !! | AATTCAATAAAAAATAAAAA+AGG | - | chr6.2:14594675-14594694 | None:intergenic | 5.0% |
| !! | ATATTATATATTAATAACAA+AGG | - | chr6.2:14596453-14596472 | None:intergenic | 5.0% |
| !! | ATTCAATAAAAAATAAAAAA+GGG | - | chr6.2:14594674-14594693 | None:intergenic | 5.0% |
| !!! | ATTTTGAAATATTTATAAAA+TGG | - | chr6.2:14595975-14595994 | None:intergenic | 5.0% |
| ACAAGGATAAACCACGCCTG+CGG | + | chr6.2:14597845-14597864 | MS.gene074219:CDS | 50.0% | |
| AGATCCGAAGAAGAGGGAAC+AGG | + | chr6.2:14597681-14597700 | MS.gene074219:CDS | 50.0% | |
| ATCAAGTTCGTCCCTGTGTC+TGG | - | chr6.2:14596134-14596153 | None:intergenic | 50.0% | |
| ATGGATACGGATGCAGACAC+CGG | + | chr6.2:14596676-14596695 | MS.gene074219:intron | 50.0% | |
| ATGGTCCCGACACAGGATAT+AGG | + | chr6.2:14597643-14597662 | MS.gene074219:CDS | 50.0% | |
| GAATAAGATGGTCCCGACAC+AGG | + | chr6.2:14597636-14597655 | MS.gene074219:CDS | 50.0% | |
| GATGAGTGTCCGTGCTTCAT+AGG | + | chr6.2:14596774-14596793 | MS.gene074219:intron | 50.0% | |
| GCACGGACACTCATCGAATT+AGG | - | chr6.2:14596769-14596788 | None:intergenic | 50.0% | |
| TCACGAGCTTGTCTTCTAGC+AGG | - | chr6.2:14594523-14594542 | None:intergenic | 50.0% | |
| TGCTAGAAGACAAGCTCGTG+AGG | + | chr6.2:14594522-14594541 | MS.gene074219:CDS | 50.0% | |
| TTCAACTACCACCCCCTCTT+AGG | - | chr6.2:14595108-14595127 | None:intergenic | 50.0% | |
| TTCTTACTCCTAAGAGGGGG+TGG | + | chr6.2:14595097-14595116 | MS.gene074219:intron | 50.0% | |
| ACGTCTCGGTCTGACACATG+TGG | - | chr6.2:14596376-14596395 | None:intergenic | 55.0% | |
| GCAGTTCTACAGCAGTCCGC+AGG | - | chr6.2:14597864-14597883 | None:intergenic | 60.0% | |
| TCTACAGCAGTCCGCAGGCG+TGG | - | chr6.2:14597859-14597878 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 14594454 | 14598409 | 14594454 | ID=MS.gene074219 |
| chr6.2 | mRNA | 14594454 | 14598409 | 14594454 | ID=MS.gene074219.t1;Parent=MS.gene074219 |
| chr6.2 | exon | 14594454 | 14594565 | 14594454 | ID=MS.gene074219.t1.exon1;Parent=MS.gene074219.t1 |
| chr6.2 | CDS | 14594454 | 14594565 | 14594454 | ID=cds.MS.gene074219.t1;Parent=MS.gene074219.t1 |
| chr6.2 | exon | 14596869 | 14597015 | 14596869 | ID=MS.gene074219.t1.exon2;Parent=MS.gene074219.t1 |
| chr6.2 | CDS | 14596869 | 14597015 | 14596869 | ID=cds.MS.gene074219.t1;Parent=MS.gene074219.t1 |
| chr6.2 | exon | 14597351 | 14597481 | 14597351 | ID=MS.gene074219.t1.exon3;Parent=MS.gene074219.t1 |
| chr6.2 | CDS | 14597351 | 14597481 | 14597351 | ID=cds.MS.gene074219.t1;Parent=MS.gene074219.t1 |
| chr6.2 | exon | 14597565 | 14597702 | 14597565 | ID=MS.gene074219.t1.exon4;Parent=MS.gene074219.t1 |
| chr6.2 | CDS | 14597565 | 14597702 | 14597565 | ID=cds.MS.gene074219.t1;Parent=MS.gene074219.t1 |
| chr6.2 | exon | 14597823 | 14597921 | 14597823 | ID=MS.gene074219.t1.exon5;Parent=MS.gene074219.t1 |
| chr6.2 | CDS | 14597823 | 14597921 | 14597823 | ID=cds.MS.gene074219.t1;Parent=MS.gene074219.t1 |
| chr6.2 | exon | 14598176 | 14598409 | 14598176 | ID=MS.gene074219.t1.exon6;Parent=MS.gene074219.t1 |
| chr6.2 | CDS | 14598176 | 14598409 | 14598176 | ID=cds.MS.gene074219.t1;Parent=MS.gene074219.t1 |
| Gene Sequence |
| Protein sequence |
