Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074357.t1 | XP_003601269.1 | 95 | 318 | 13 | 1 | 1 | 315 | 1 | 318 | 7.90E-165 | 589.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074357.t1 | Q9ZUD9 | 36.1 | 310 | 180 | 4 | 15 | 307 | 8 | 316 | 5.2e-48 | 193.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074357.t1 | G7J5G4 | 95.0 | 318 | 13 | 1 | 1 | 315 | 1 | 318 | 5.7e-165 | 589.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05234 | MS.gene074357 | 0.802034 | 6.79E-49 | -1.69E-46 |
| MS.gene053421 | MS.gene074357 | 0.853281 | 2.65E-61 | -1.69E-46 |
| MS.gene056647 | MS.gene074357 | 0.809181 | 2.15E-50 | -1.69E-46 |
| MS.gene057173 | MS.gene074357 | 0.832507 | 9.09E-56 | -1.69E-46 |
| MS.gene058157 | MS.gene074357 | -0.800185 | 1.62E-48 | -1.69E-46 |
| MS.gene061226 | MS.gene074357 | 0.816031 | 6.82E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074357.t1 | MTR_3g077870 | 94.969 | 318 | 13 | 1 | 1 | 315 | 1 | 318 | 0.0 | 620 |
| MS.gene074357.t1 | MTR_4g105740 | 49.518 | 311 | 141 | 5 | 9 | 315 | 11 | 309 | 2.10e-101 | 300 |
| MS.gene074357.t1 | MTR_4g105740 | 49.508 | 305 | 138 | 5 | 9 | 309 | 11 | 303 | 4.19e-99 | 295 |
| MS.gene074357.t1 | MTR_8g088250 | 35.507 | 276 | 166 | 4 | 39 | 303 | 5 | 279 | 1.68e-53 | 177 |
| MS.gene074357.t1 | MTR_1g112330 | 28.657 | 335 | 193 | 6 | 6 | 299 | 223 | 552 | 3.64e-39 | 145 |
| MS.gene074357.t1 | MTR_1g112330 | 28.402 | 338 | 193 | 6 | 6 | 299 | 223 | 555 | 8.83e-39 | 144 |
| MS.gene074357.t1 | MTR_5g032190 | 29.969 | 327 | 173 | 8 | 20 | 300 | 233 | 549 | 3.01e-36 | 137 |
| MS.gene074357.t1 | MTR_5g029580 | 29.021 | 286 | 160 | 8 | 58 | 305 | 64 | 344 | 5.30e-34 | 128 |
| MS.gene074357.t1 | MTR_1g112330 | 32.328 | 232 | 144 | 5 | 8 | 231 | 225 | 451 | 4.87e-33 | 127 |
| MS.gene074357.t1 | MTR_7g011550 | 29.643 | 280 | 159 | 7 | 64 | 309 | 257 | 532 | 1.51e-32 | 126 |
| MS.gene074357.t1 | MTR_5g032190 | 34.234 | 222 | 126 | 7 | 20 | 231 | 233 | 444 | 2.04e-30 | 120 |
| MS.gene074357.t1 | MTR_5g032190 | 34.234 | 222 | 126 | 7 | 20 | 231 | 233 | 444 | 2.48e-30 | 120 |
| MS.gene074357.t1 | MTR_7g011880 | 32.110 | 109 | 66 | 2 | 182 | 282 | 78 | 186 | 6.35e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074357.t1 | AT1G23550 | 37.500 | 280 | 162 | 3 | 47 | 314 | 45 | 323 | 9.89e-63 | 202 |
| MS.gene074357.t1 | AT3G47720 | 36.709 | 316 | 176 | 8 | 10 | 311 | 8 | 313 | 5.81e-57 | 187 |
| MS.gene074357.t1 | AT5G62520 | 40.727 | 275 | 145 | 8 | 47 | 311 | 42 | 308 | 1.44e-55 | 183 |
| MS.gene074357.t1 | AT1G70440 | 31.908 | 304 | 185 | 7 | 20 | 307 | 7 | 304 | 1.42e-47 | 162 |
| MS.gene074357.t1 | AT1G70440 | 31.908 | 304 | 185 | 7 | 20 | 307 | 7 | 304 | 1.42e-47 | 162 |
| MS.gene074357.t1 | AT1G32230 | 31.333 | 300 | 155 | 7 | 58 | 311 | 276 | 570 | 4.84e-40 | 147 |
| MS.gene074357.t1 | AT1G32230 | 31.849 | 292 | 148 | 7 | 58 | 303 | 276 | 562 | 1.31e-39 | 147 |
| MS.gene074357.t1 | AT1G32230 | 31.849 | 292 | 148 | 7 | 58 | 303 | 276 | 562 | 1.31e-39 | 147 |
| MS.gene074357.t1 | AT1G32230 | 31.849 | 292 | 148 | 7 | 58 | 303 | 276 | 562 | 1.31e-39 | 147 |
| MS.gene074357.t1 | AT1G32230 | 31.849 | 292 | 148 | 7 | 58 | 303 | 276 | 562 | 1.31e-39 | 147 |
| MS.gene074357.t1 | AT1G32230 | 31.741 | 293 | 148 | 7 | 58 | 303 | 276 | 563 | 1.88e-39 | 146 |
| MS.gene074357.t1 | AT5G62520 | 40.104 | 192 | 100 | 7 | 47 | 228 | 42 | 228 | 2.00e-37 | 134 |
| MS.gene074357.t1 | AT2G35510 | 29.904 | 311 | 151 | 8 | 48 | 303 | 262 | 560 | 1.24e-31 | 124 |
| MS.gene074357.t1 | AT2G35510 | 29.904 | 311 | 151 | 8 | 48 | 303 | 262 | 560 | 1.24e-31 | 124 |
| MS.gene074357.t1 | AT2G35510 | 32.642 | 193 | 111 | 4 | 48 | 230 | 262 | 445 | 1.78e-25 | 106 |
Find 69 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATACTGTGCAGGGTTATTT+TGG | 0.115015 | 3.4:+74737420 | MS.gene074357:CDS |
| AGTTGTGCGGATTATGATTC+TGG | 0.187777 | 3.4:+74737487 | MS.gene074357:CDS |
| CGAATCTCCACCGCGAAGTT+TGG | 0.267880 | 3.4:-74736385 | None:intergenic |
| TTCTCCTAACCTAACTAAAA+AGG | 0.275442 | 3.4:-74736205 | None:intergenic |
| CTTTGTAGAACTTGCAAATC+AGG | 0.284073 | 3.4:-74737822 | None:intergenic |
| CTCCAACTAAGTACATGATT+TGG | 0.360085 | 3.4:+74737527 | MS.gene074357:CDS |
| CTAAAGACGAGGTTTCTTCA+TGG | 0.400145 | 3.4:+74736249 | MS.gene074357:CDS |
| GACGAGGTTTCTTCATGGCT+TGG | 0.402614 | 3.4:+74736254 | MS.gene074357:CDS |
| ACGAGGTTTCTTCATGGCTT+GGG | 0.407523 | 3.4:+74736255 | MS.gene074357:CDS |
| TTCTTCGCCGGTGGTGGTGG+CGG | 0.412701 | 3.4:-74736154 | None:intergenic |
| CAAGTTCTACAAAGCTAGAA+AGG | 0.426903 | 3.4:+74737831 | MS.gene074357:CDS |
| GTAGAATGAATACTCATGTT+TGG | 0.434386 | 3.4:+74737554 | MS.gene074357:CDS |
| ACTGGTGAGAATGACGTTAG+AGG | 0.440885 | 3.4:+74736435 | MS.gene074357:CDS |
| CATCATGATCCCATTCCTCT+TGG | 0.443393 | 3.4:-74736080 | None:intergenic |
| CTTTGAAGAGGAGAATCATC+TGG | 0.446663 | 3.4:-74736510 | None:intergenic |
| TTCAAGGTTTCTTCTTTGAA+AGG | 0.449498 | 3.4:+74737595 | MS.gene074357:CDS |
| GTTGTGCGGATTATGATTCT+GGG | 0.450865 | 3.4:+74737488 | MS.gene074357:CDS |
| CTCCAAATCATGTACTTAGT+TGG | 0.452958 | 3.4:-74737529 | None:intergenic |
| TTGTTCTTCGCCGGTGGTGG+TGG | 0.454132 | 3.4:-74736157 | None:intergenic |
| ATCAAGTTGTGGCGAAACCT+TGG | 0.465639 | 3.4:-74737794 | None:intergenic |
| TGAGGCATTTGATACTGTGC+AGG | 0.465779 | 3.4:+74737410 | MS.gene074357:CDS |
| GGAGGAGTCTTCACCGATGC+TGG | 0.466913 | 3.4:-74736103 | None:intergenic |
| TTTGCAGCGGTTGAGATTGA+AGG | 0.470522 | 3.4:+74737715 | MS.gene074357:intron |
| TATGGAATTCCAAGAGGAAT+GGG | 0.475448 | 3.4:+74736071 | None:intergenic |
| ATAGAAATCAAAGTCGGAAA+AGG | 0.484157 | 3.4:-74737766 | None:intergenic |
| TGCGAGACCAACTTCACCTT+CGG | 0.491538 | 3.4:+74737741 | MS.gene074357:CDS |
| ACCGCTTTCGCAGTCGGAAA+CGG | 0.496051 | 3.4:-74736127 | None:intergenic |
| TTTGATTTCTATGCTTTCCA+AGG | 0.497741 | 3.4:+74737777 | MS.gene074357:CDS |
| GAATCATAATCCGCACAACT+TGG | 0.501035 | 3.4:-74737484 | None:intergenic |
| TATGCTTGGTATGGAGCTAC+TGG | 0.501397 | 3.4:+74736417 | MS.gene074357:CDS |
| TTCGCAGTCGGAAACGGTGG+AGG | 0.502683 | 3.4:-74736121 | None:intergenic |
| TCGAAGCCGCGCCTGTGAAA+CGG | 0.510220 | 3.4:-74736334 | None:intergenic |
| TTGAAGCTTAAAACATATGC+AGG | 0.515889 | 3.4:-74737577 | None:intergenic |
| TAAAGAACTAACCTTTGAAG+AGG | 0.520559 | 3.4:-74736522 | None:intergenic |
| TTTGTAGAACTTGCAAATCA+GGG | 0.522828 | 3.4:-74737821 | None:intergenic |
| GTGTTCTGACGCCGTTTCAC+AGG | 0.529220 | 3.4:+74736323 | MS.gene074357:CDS |
| AACGGTTTCAGTCATGTCCA+TGG | 0.529234 | 3.4:+74736468 | MS.gene074357:CDS |
| GAAGAAACCTCGTCTTTAGT+AGG | 0.529434 | 3.4:-74736245 | None:intergenic |
| TCGTTGTTCTTCGCCGGTGG+TGG | 0.529479 | 3.4:-74736160 | None:intergenic |
| AGTTGTGCTGTTGGCAGAGA+TGG | 0.530261 | 3.4:+74737385 | MS.gene074357:CDS |
| CTATGGAATTCCAAGAGGAA+TGG | 0.530385 | 3.4:+74736070 | None:intergenic |
| ACCGTTTCCGACTGCGAAAG+CGG | 0.530594 | 3.4:+74736126 | MS.gene074357:CDS |
| GGTGTTTCCGCCACCACCAC+CGG | 0.531519 | 3.4:+74736147 | MS.gene074357:CDS |
| GTTAGAGGCATTCTATCAAA+CGG | 0.543708 | 3.4:+74736450 | MS.gene074357:CDS |
| ATTCGAATGTGAAATATGCT+TGG | 0.547805 | 3.4:+74736403 | MS.gene074357:CDS |
| CAGATGATTCTCCTCTTCAA+AGG | 0.551412 | 3.4:+74736511 | MS.gene074357:CDS |
| AATGTGAAATATGCTTGGTA+TGG | 0.558383 | 3.4:+74736408 | MS.gene074357:CDS |
| TCGTTGTCGTTGTTCTTCGC+CGG | 0.558549 | 3.4:-74736166 | None:intergenic |
| GGAAACACCGCTTTCGCAGT+CGG | 0.561570 | 3.4:-74736133 | None:intergenic |
| GAAGCTGTTTCCAAACTTCG+CGG | 0.562465 | 3.4:+74736375 | MS.gene074357:CDS |
| TTGTCGTTGTTCTTCGCCGG+TGG | 0.567729 | 3.4:-74736163 | None:intergenic |
| AAAGGCACCGAAGGTGAAGT+TGG | 0.570890 | 3.4:-74737748 | None:intergenic |
| CTGACGCCGTTTCACAGGCG+CGG | 0.588804 | 3.4:+74736328 | MS.gene074357:CDS |
| GAATGAAACTAGTTGTACCT+TGG | 0.596219 | 3.4:-74738051 | None:intergenic |
| ACGGTTTCAGTCATGTCCAT+GGG | 0.601023 | 3.4:+74736469 | MS.gene074357:CDS |
| TGGGATCATGATGCCAGCAT+CGG | 0.605132 | 3.4:+74736090 | MS.gene074357:CDS |
| AAAGTCGGAAAAGGCACCGA+AGG | 0.610022 | 3.4:-74737757 | None:intergenic |
| GAAAGCATAGAAATCAAAGT+CGG | 0.616257 | 3.4:-74737772 | None:intergenic |
| AGAGACAGATGCTATTCCCA+TGG | 0.619618 | 3.4:-74736485 | None:intergenic |
| GAGGCATTTGATACTGTGCA+GGG | 0.621915 | 3.4:+74737411 | MS.gene074357:CDS |
| ATCAGGGCAATATCAAGTTG+TGG | 0.630687 | 3.4:-74737805 | None:intergenic |
| GCTTTCGCAGTCGGAAACGG+TGG | 0.645384 | 3.4:-74736124 | None:intergenic |
| CATTAAGTATTATAGAGCCA+AGG | 0.648089 | 3.4:+74738034 | MS.gene074357:CDS |
| ACAATGTTATCCAAGTTGTG+CGG | 0.655418 | 3.4:+74737474 | MS.gene074357:CDS |
| TTCACGACCTACTAAAGACG+AGG | 0.669260 | 3.4:+74736238 | MS.gene074357:CDS |
| GCTGTTTCCAAACTTCGCGG+TGG | 0.670880 | 3.4:+74736378 | MS.gene074357:CDS |
| TTGTGCGGATTATGATTCTG+GGG | 0.671025 | 3.4:+74737489 | MS.gene074357:CDS |
| CTGTTGGCAGAGATGGCGTG+AGG | 0.672325 | 3.4:+74737392 | MS.gene074357:CDS |
| ATTCACTATGGAATTCCAAG+AGG | 0.710595 | 3.4:+74736065 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACCTAAATTCAAATTAACAT+TGG | - | chr3.4:74736552-74736571 | None:intergenic | 20.0% |
| !!! | AAGATAAAGTGTTTTATGTT+TGG | - | chr3.4:74737156-74737175 | None:intergenic | 20.0% |
| !!! | TCCAATGTTAATTTGAATTT+AGG | + | chr3.4:74736548-74736567 | MS.gene074357:intron | 20.0% |
| !!! | TTTTTTATTGTTTTTTGCAG+CGG | + | chr3.4:74737702-74737721 | MS.gene074357:intron | 20.0% |
| ! | ACTAAATTCATGAAACAACA+AGG | - | chr3.4:74737670-74737689 | None:intergenic | 25.0% |
| ! | TCAAGTATAATCAATTCTTG+AGG | - | chr3.4:74737059-74737078 | None:intergenic | 25.0% |
| ! | TTGAACAATAAGTGTATGTA+TGG | - | chr3.4:74737234-74737253 | None:intergenic | 25.0% |
| !! | CTTTTTCTATCAATTCATGT+CGG | - | chr3.4:74737977-74737996 | None:intergenic | 25.0% |
| !! | TTTTTCTATCAATTCATGTC+GGG | - | chr3.4:74737976-74737995 | None:intergenic | 25.0% |
| !!! | ATTCTGATTCCTTTTTAGTT+AGG | + | chr3.4:74736196-74736215 | MS.gene074357:CDS | 25.0% |
| !!! | TAGAATTGATTTTGCCATTT+TGG | + | chr3.4:74736737-74736756 | MS.gene074357:intron | 25.0% |
| AAATAAGGCAACATTCCATA+AGG | + | chr3.4:74736677-74736696 | MS.gene074357:intron | 30.0% | |
| AATGTGAAATATGCTTGGTA+TGG | + | chr3.4:74736408-74736427 | MS.gene074357:CDS | 30.0% | |
| AGCTTCTGCATAAAAAAGAA+AGG | - | chr3.4:74736361-74736380 | None:intergenic | 30.0% | |
| ATACTCAATAGCAACCAAAA+TGG | - | chr3.4:74736754-74736773 | None:intergenic | 30.0% | |
| ATAGAAATCAAAGTCGGAAA+AGG | - | chr3.4:74737769-74737788 | None:intergenic | 30.0% | |
| ATTCGAATGTGAAATATGCT+TGG | + | chr3.4:74736403-74736422 | MS.gene074357:CDS | 30.0% | |
| ATTTCATAAGCTATTCCAAC+CGG | + | chr3.4:74736647-74736666 | MS.gene074357:intron | 30.0% | |
| CATTAAGTATTATAGAGCCA+AGG | + | chr3.4:74738034-74738053 | MS.gene074357:CDS | 30.0% | |
| GTAGAATGAATACTCATGTT+TGG | + | chr3.4:74737554-74737573 | MS.gene074357:CDS | 30.0% | |
| TCTTAAACCAATATGCAAGT+AGG | - | chr3.4:74737875-74737894 | None:intergenic | 30.0% | |
| TTCAAGGTTTCTTCTTTGAA+AGG | + | chr3.4:74737595-74737614 | MS.gene074357:CDS | 30.0% | |
| TTCTCCTAACCTAACTAAAA+AGG | - | chr3.4:74736208-74736227 | None:intergenic | 30.0% | |
| TTGAAGCTTAAAACATATGC+AGG | - | chr3.4:74737580-74737599 | None:intergenic | 30.0% | |
| TTTGTAGAACTTGCAAATCA+GGG | - | chr3.4:74737824-74737843 | None:intergenic | 30.0% | |
| ! | AATTGATTCTACTTGAAGCT+AGG | + | chr3.4:74736778-74736797 | MS.gene074357:intron | 30.0% |
| ! | GAAAGCATAGAAATCAAAGT+CGG | - | chr3.4:74737775-74737794 | None:intergenic | 30.0% |
| ! | TAAAGAACTAACCTTTGAAG+AGG | - | chr3.4:74736525-74736544 | None:intergenic | 30.0% |
| ! | TTTGATTTCTATGCTTTCCA+AGG | + | chr3.4:74737777-74737796 | MS.gene074357:CDS | 30.0% |
| ! | TTTTCGTTTCTGACTAAAAG+TGG | - | chr3.4:74736887-74736906 | None:intergenic | 30.0% |
| !! | ACTGATTTTCACATGTTTGA+TGG | + | chr3.4:74737011-74737030 | MS.gene074357:intron | 30.0% |
| !! | TGCATATGTTTTAAGCTTCA+AGG | + | chr3.4:74737579-74737598 | MS.gene074357:CDS | 30.0% |
| !!! | GATTCCTTTTTAGTTAGGTT+AGG | + | chr3.4:74736201-74736220 | MS.gene074357:CDS | 30.0% |
| !!! | TTTTTAGTTAGGTTAGGAGA+AGG | + | chr3.4:74736207-74736226 | MS.gene074357:CDS | 30.0% |
| ACAATGTTATCCAAGTTGTG+CGG | + | chr3.4:74737474-74737493 | MS.gene074357:CDS | 35.0% | |
| ACACATGCTTAGTGTATGTT+TGG | + | chr3.4:74736945-74736964 | MS.gene074357:intron | 35.0% | |
| AGTGTAAAAAGTTGTGCTGT+TGG | + | chr3.4:74737376-74737395 | MS.gene074357:intron | 35.0% | |
| CAAGTTCTACAAAGCTAGAA+AGG | + | chr3.4:74737831-74737850 | MS.gene074357:CDS | 35.0% | |
| CGAAATGTCTAGTGTATGTT+TGG | + | chr3.4:74736705-74736724 | MS.gene074357:intron | 35.0% | |
| CTCCAAATCATGTACTTAGT+TGG | - | chr3.4:74737532-74737551 | None:intergenic | 35.0% | |
| CTCCAACTAAGTACATGATT+TGG | + | chr3.4:74737527-74737546 | MS.gene074357:CDS | 35.0% | |
| CTTTGTAGAACTTGCAAATC+AGG | - | chr3.4:74737825-74737844 | None:intergenic | 35.0% | |
| GAAAAAGTGAGACAAATTGC+AGG | + | chr3.4:74737990-74738009 | MS.gene074357:CDS | 35.0% | |
| GAATGAAACTAGTTGTACCT+TGG | - | chr3.4:74738054-74738073 | None:intergenic | 35.0% | |
| GACTAAAAGTGGTATGTGTT+TGG | - | chr3.4:74736876-74736895 | None:intergenic | 35.0% | |
| TTCTACAAAGCTAGAAAGGT+AGG | + | chr3.4:74737835-74737854 | MS.gene074357:intron | 35.0% | |
| TTTCATAAGCTATTCCAACC+GGG | + | chr3.4:74736648-74736667 | MS.gene074357:intron | 35.0% | |
| TTTGCTTCCTACTTGCATAT+TGG | + | chr3.4:74737865-74737884 | MS.gene074357:intron | 35.0% | |
| ! | ACTTCTAGAGGGATCAAAAT+TGG | + | chr3.4:74736972-74736991 | MS.gene074357:intron | 35.0% |
| ! | ATGTTTGGTTTCACTTCTAG+AGG | + | chr3.4:74736960-74736979 | MS.gene074357:intron | 35.0% |
| ! | GGCAAAATCAATTCTAAGAG+TGG | - | chr3.4:74736733-74736752 | None:intergenic | 35.0% |
| ! | TCATTTGCTCTATTTCTTGC+AGG | + | chr3.4:74737938-74737957 | MS.gene074357:intron | 35.0% |
| ! | TGTTTGGTTTCACTTCTAGA+GGG | + | chr3.4:74736961-74736980 | MS.gene074357:intron | 35.0% |
| !! | ATACTGTGCAGGGTTATTTT+GGG | + | chr3.4:74737421-74737440 | MS.gene074357:CDS | 35.0% |
| !! | GTTAGAGGCATTCTATCAAA+CGG | + | chr3.4:74736450-74736469 | MS.gene074357:CDS | 35.0% |
| !! | GTTGCCTTATTTCTATAACC+CGG | - | chr3.4:74736669-74736688 | None:intergenic | 35.0% |
| AAAGCTAGAAAGGTAGGTGT+TGG | + | chr3.4:74737841-74737860 | MS.gene074357:intron | 40.0% | |
| AGACATTTCGAGAGACCTTA+TGG | - | chr3.4:74736695-74736714 | None:intergenic | 40.0% | |
| CAGATGATTCTCCTCTTCAA+AGG | + | chr3.4:74736511-74736530 | MS.gene074357:CDS | 40.0% | |
| CCAACCGGGTTATAGAAATA+AGG | + | chr3.4:74736662-74736681 | MS.gene074357:intron | 40.0% | |
| CTAAAGACGAGGTTTCTTCA+TGG | + | chr3.4:74736249-74736268 | MS.gene074357:CDS | 40.0% | |
| GAAGAAACCTCGTCTTTAGT+AGG | - | chr3.4:74736248-74736267 | None:intergenic | 40.0% | |
| GAATCATAATCCGCACAACT+TGG | - | chr3.4:74737487-74737506 | None:intergenic | 40.0% | |
| ! | AGTTGTGCGGATTATGATTC+TGG | + | chr3.4:74737487-74737506 | MS.gene074357:CDS | 40.0% |
| ! | ATCAGGGCAATATCAAGTTG+TGG | - | chr3.4:74737808-74737827 | None:intergenic | 40.0% |
| ! | CTTTGAAGAGGAGAATCATC+TGG | - | chr3.4:74736513-74736532 | None:intergenic | 40.0% |
| ! | GATACTGTGCAGGGTTATTT+TGG | + | chr3.4:74737420-74737439 | MS.gene074357:CDS | 40.0% |
| ! | GTTGTGCGGATTATGATTCT+GGG | + | chr3.4:74737488-74737507 | MS.gene074357:CDS | 40.0% |
| ! | TTGTGCGGATTATGATTCTG+GGG | + | chr3.4:74737489-74737508 | MS.gene074357:CDS | 40.0% |
| !! | CCTTATTTCTATAACCCGGT+TGG | - | chr3.4:74736665-74736684 | None:intergenic | 40.0% |
| AACGGTTTCAGTCATGTCCA+TGG | + | chr3.4:74736468-74736487 | MS.gene074357:CDS | 45.0% | |
| ACGAGGTTTCTTCATGGCTT+GGG | + | chr3.4:74736255-74736274 | MS.gene074357:CDS | 45.0% | |
| ACGGTTTCAGTCATGTCCAT+GGG | + | chr3.4:74736469-74736488 | MS.gene074357:CDS | 45.0% | |
| ACTGGTGAGAATGACGTTAG+AGG | + | chr3.4:74736435-74736454 | MS.gene074357:CDS | 45.0% | |
| AGAGACAGATGCTATTCCCA+TGG | - | chr3.4:74736488-74736507 | None:intergenic | 45.0% | |
| CATCATGATCCCATTCCTCT+TGG | - | chr3.4:74736083-74736102 | None:intergenic | 45.0% | |
| TATGCTTGGTATGGAGCTAC+TGG | + | chr3.4:74736417-74736436 | MS.gene074357:CDS | 45.0% | |
| TTCACGACCTACTAAAGACG+AGG | + | chr3.4:74736238-74736257 | MS.gene074357:CDS | 45.0% | |
| TTTGCAGCGGTTGAGATTGA+AGG | + | chr3.4:74737715-74737734 | MS.gene074357:intron | 45.0% | |
| ! | ATCAAGTTGTGGCGAAACCT+TGG | - | chr3.4:74737797-74737816 | None:intergenic | 45.0% |
| ! | GAAGCTGTTTCCAAACTTCG+CGG | + | chr3.4:74736375-74736394 | MS.gene074357:CDS | 45.0% |
| ! | GAGGCATTTGATACTGTGCA+GGG | + | chr3.4:74737411-74737430 | MS.gene074357:CDS | 45.0% |
| ! | TGAGGCATTTGATACTGTGC+AGG | + | chr3.4:74737410-74737429 | MS.gene074357:CDS | 45.0% |
| GACGAGGTTTCTTCATGGCT+TGG | + | chr3.4:74736254-74736273 | MS.gene074357:CDS | 50.0% | |
| TCGTTGTCGTTGTTCTTCGC+CGG | - | chr3.4:74736169-74736188 | None:intergenic | 50.0% | |
| TGCGAGACCAACTTCACCTT+CGG | + | chr3.4:74737741-74737760 | MS.gene074357:CDS | 50.0% | |
| TGGGATCATGATGCCAGCAT+CGG | + | chr3.4:74736090-74736109 | MS.gene074357:CDS | 50.0% | |
| ! | AGTTGTGCTGTTGGCAGAGA+TGG | + | chr3.4:74737385-74737404 | MS.gene074357:CDS | 50.0% |
| !! | AAAGGCACCGAAGGTGAAGT+TGG | - | chr3.4:74737751-74737770 | None:intergenic | 50.0% |
| !! | AAAGTCGGAAAAGGCACCGA+AGG | - | chr3.4:74737760-74737779 | None:intergenic | 50.0% |
| ACCGCTTTCGCAGTCGGAAA+CGG | - | chr3.4:74736130-74736149 | None:intergenic | 55.0% | |
| ACCGTTTCCGACTGCGAAAG+CGG | + | chr3.4:74736126-74736145 | MS.gene074357:CDS | 55.0% | |
| CGAATCTCCACCGCGAAGTT+TGG | - | chr3.4:74736388-74736407 | None:intergenic | 55.0% | |
| GGAAACACCGCTTTCGCAGT+CGG | - | chr3.4:74736136-74736155 | None:intergenic | 55.0% | |
| GTGTTCTGACGCCGTTTCAC+AGG | + | chr3.4:74736323-74736342 | MS.gene074357:CDS | 55.0% | |
| TTGTCGTTGTTCTTCGCCGG+TGG | - | chr3.4:74736166-74736185 | None:intergenic | 55.0% | |
| ! | GCTGTTTCCAAACTTCGCGG+TGG | + | chr3.4:74736378-74736397 | MS.gene074357:CDS | 55.0% |
| CTGTTGGCAGAGATGGCGTG+AGG | + | chr3.4:74737392-74737411 | MS.gene074357:CDS | 60.0% | |
| GCTTTCGCAGTCGGAAACGG+TGG | - | chr3.4:74736127-74736146 | None:intergenic | 60.0% | |
| GGAGGAGTCTTCACCGATGC+TGG | - | chr3.4:74736106-74736125 | None:intergenic | 60.0% | |
| TCGAAGCCGCGCCTGTGAAA+CGG | - | chr3.4:74736337-74736356 | None:intergenic | 60.0% | |
| TCGTTGTTCTTCGCCGGTGG+TGG | - | chr3.4:74736163-74736182 | None:intergenic | 60.0% | |
| TTCGCAGTCGGAAACGGTGG+AGG | - | chr3.4:74736124-74736143 | None:intergenic | 60.0% | |
| ! | TTGTTCTTCGCCGGTGGTGG+TGG | - | chr3.4:74736160-74736179 | None:intergenic | 60.0% |
| CTGACGCCGTTTCACAGGCG+CGG | + | chr3.4:74736328-74736347 | MS.gene074357:CDS | 65.0% | |
| GGTGTTTCCGCCACCACCAC+CGG | + | chr3.4:74736147-74736166 | MS.gene074357:CDS | 65.0% | |
| !! | TTCTTCGCCGGTGGTGGTGG+CGG | - | chr3.4:74736157-74736176 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 74736072 | 74738076 | 74736072 | ID=MS.gene074357 |
| chr3.4 | mRNA | 74736072 | 74738076 | 74736072 | ID=MS.gene074357.t1;Parent=MS.gene074357 |
| chr3.4 | exon | 74736072 | 74736532 | 74736072 | ID=MS.gene074357.t1.exon1;Parent=MS.gene074357.t1 |
| chr3.4 | CDS | 74736072 | 74736532 | 74736072 | ID=cds.MS.gene074357.t1;Parent=MS.gene074357.t1 |
| chr3.4 | exon | 74737378 | 74737616 | 74737378 | ID=MS.gene074357.t1.exon2;Parent=MS.gene074357.t1 |
| chr3.4 | CDS | 74737378 | 74737616 | 74737378 | ID=cds.MS.gene074357.t1;Parent=MS.gene074357.t1 |
| chr3.4 | exon | 74737722 | 74737852 | 74737722 | ID=MS.gene074357.t1.exon3;Parent=MS.gene074357.t1 |
| chr3.4 | CDS | 74737722 | 74737852 | 74737722 | ID=cds.MS.gene074357.t1;Parent=MS.gene074357.t1 |
| chr3.4 | exon | 74737960 | 74738076 | 74737960 | ID=MS.gene074357.t1.exon4;Parent=MS.gene074357.t1 |
| chr3.4 | CDS | 74737960 | 74738076 | 74737960 | ID=cds.MS.gene074357.t1;Parent=MS.gene074357.t1 |
| Gene Sequence |
| Protein sequence |
