Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05234.t1 | XP_003620188.1 | 94.8 | 213 | 11 | 0 | 1 | 213 | 1 | 213 | 4.60E-116 | 427.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05234.t1 | P13087 | 44.6 | 213 | 101 | 5 | 5 | 209 | 11 | 214 | 2.6e-43 | 176.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05234.t1 | G7KKR0 | 94.8 | 213 | 11 | 0 | 1 | 213 | 1 | 213 | 3.3e-116 | 427.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049217 | MS.gene05234 | -0.804333 | 2.27E-49 | -1.69E-46 |
MS.gene049222 | MS.gene05234 | -0.805903 | 1.07E-49 | -1.69E-46 |
MS.gene050380 | MS.gene05234 | 0.82262 | 2.15E-53 | -1.69E-46 |
MS.gene050381 | MS.gene05234 | 0.826804 | 2.22E-54 | -1.69E-46 |
MS.gene05104 | MS.gene05234 | 0.816143 | 6.44E-52 | -1.69E-46 |
MS.gene05141 | MS.gene05234 | 0.800104 | 1.69E-48 | -1.69E-46 |
MS.gene051694 | MS.gene05234 | -0.858301 | 9.05E-63 | -1.69E-46 |
MS.gene051858 | MS.gene05234 | -0.814857 | 1.24E-51 | -1.69E-46 |
MS.gene051946 | MS.gene05234 | 0.829249 | 5.72E-55 | -1.69E-46 |
MS.gene05234 | MS.gene053420 | 0.822802 | 1.95E-53 | -1.69E-46 |
MS.gene05234 | MS.gene053421 | 0.842885 | 1.97E-58 | -1.69E-46 |
MS.gene05234 | MS.gene054707 | 0.815933 | 7.17E-52 | -1.69E-46 |
MS.gene05234 | MS.gene055202 | 0.848324 | 6.59E-60 | -1.69E-46 |
MS.gene05234 | MS.gene055577 | -0.805787 | 1.13E-49 | -1.69E-46 |
MS.gene05234 | MS.gene056310 | 0.801778 | 7.67E-49 | -1.69E-46 |
MS.gene05234 | MS.gene056313 | 0.823072 | 1.69E-53 | -1.69E-46 |
MS.gene05234 | MS.gene057014 | 0.815458 | 9.15E-52 | -1.69E-46 |
MS.gene05234 | MS.gene058157 | -0.836902 | 7.13E-57 | -1.69E-46 |
MS.gene05234 | MS.gene058171 | 0.804481 | 2.12E-49 | -1.69E-46 |
MS.gene05234 | MS.gene058175 | 0.803435 | 3.49E-49 | -1.69E-46 |
MS.gene05234 | MS.gene05837 | -0.818268 | 2.14E-52 | -1.69E-46 |
MS.gene05234 | MS.gene059223 | 0.810684 | 1.02E-50 | -1.69E-46 |
MS.gene05234 | MS.gene059902 | -0.817603 | 3.03E-52 | -1.69E-46 |
MS.gene05234 | MS.gene060595 | 0.813165 | 2.94E-51 | -1.69E-46 |
MS.gene05234 | MS.gene06077 | -0.804895 | 1.73E-49 | -1.69E-46 |
MS.gene05234 | MS.gene061360 | -0.815316 | 9.84E-52 | -1.69E-46 |
MS.gene05234 | MS.gene061798 | 0.801971 | 7.00E-49 | -1.69E-46 |
MS.gene05234 | MS.gene061862 | -0.800734 | 1.25E-48 | -1.69E-46 |
MS.gene05234 | MS.gene063062 | 0.803874 | 2.83E-49 | -1.69E-46 |
MS.gene05234 | MS.gene063073 | 0.821163 | 4.67E-53 | -1.69E-46 |
MS.gene05234 | MS.gene06332 | -0.804041 | 2.61E-49 | -1.69E-46 |
MS.gene05234 | MS.gene06336 | -0.800368 | 1.49E-48 | -1.69E-46 |
MS.gene05234 | MS.gene064062 | 0.812484 | 4.14E-51 | -1.69E-46 |
MS.gene05234 | MS.gene065465 | 0.832549 | 8.87E-56 | -1.69E-46 |
MS.gene05234 | MS.gene066957 | 0.802294 | 6.01E-49 | -1.69E-46 |
MS.gene05234 | MS.gene068138 | -0.803551 | 3.30E-49 | -1.69E-46 |
MS.gene05234 | MS.gene069033 | 0.806055 | 9.91E-50 | -1.69E-46 |
MS.gene05234 | MS.gene069356 | -0.803354 | 3.63E-49 | -1.69E-46 |
MS.gene05234 | MS.gene069486 | 0.813458 | 2.53E-51 | -1.69E-46 |
MS.gene05234 | MS.gene071843 | 0.803827 | 2.89E-49 | -1.69E-46 |
MS.gene05234 | MS.gene071844 | 0.800537 | 1.38E-48 | -1.69E-46 |
MS.gene05234 | MS.gene072468 | -0.801455 | 8.93E-49 | -1.69E-46 |
MS.gene05234 | MS.gene072602 | 0.820008 | 8.60E-53 | -1.69E-46 |
MS.gene05234 | MS.gene072806 | 0.826089 | 3.28E-54 | -1.69E-46 |
MS.gene05234 | MS.gene072962 | -0.826025 | 3.40E-54 | -1.69E-46 |
MS.gene05234 | MS.gene073118 | -0.80545 | 1.33E-49 | -1.69E-46 |
MS.gene05234 | MS.gene07329 | -0.802732 | 4.88E-49 | -1.69E-46 |
MS.gene05234 | MS.gene073868 | 0.801719 | 7.88E-49 | -1.69E-46 |
MS.gene05234 | MS.gene074357 | 0.802034 | 6.79E-49 | -1.69E-46 |
MS.gene05234 | MS.gene07612 | 0.821142 | 4.72E-53 | -1.69E-46 |
MS.gene05234 | MS.gene09072 | 0.815653 | 8.28E-52 | -1.69E-46 |
MS.gene05234 | MS.gene09798 | -0.80314 | 4.02E-49 | -1.69E-46 |
MS.gene05234 | MS.gene20027 | -0.803815 | 2.91E-49 | -1.69E-46 |
MS.gene05234 | MS.gene21577 | 0.801703 | 7.95E-49 | -1.69E-46 |
MS.gene05234 | MS.gene21794 | 0.806001 | 1.02E-49 | -1.69E-46 |
MS.gene05234 | MS.gene23413 | 0.828497 | 8.70E-55 | -1.69E-46 |
MS.gene05234 | MS.gene23503 | 0.808604 | 2.85E-50 | -1.69E-46 |
MS.gene05234 | MS.gene24080 | -0.830903 | 2.26E-55 | -1.69E-46 |
MS.gene05234 | MS.gene24082 | -0.829379 | 5.32E-55 | -1.69E-46 |
MS.gene05234 | MS.gene24272 | 0.807053 | 6.10E-50 | -1.69E-46 |
MS.gene05234 | MS.gene24474 | -0.830498 | 2.84E-55 | -1.69E-46 |
MS.gene05234 | MS.gene24491 | 0.800761 | 1.24E-48 | -1.69E-46 |
MS.gene05234 | MS.gene24631 | -0.830693 | 2.54E-55 | -1.69E-46 |
MS.gene05234 | MS.gene25964 | 0.804919 | 1.71E-49 | -1.69E-46 |
MS.gene05234 | MS.gene26285 | 0.808688 | 2.74E-50 | -1.69E-46 |
MS.gene05234 | MS.gene26517 | 0.816294 | 5.96E-52 | -1.69E-46 |
MS.gene05234 | MS.gene27116 | -0.814745 | 1.32E-51 | -1.69E-46 |
MS.gene05234 | MS.gene27117 | -0.822028 | 2.95E-53 | -1.69E-46 |
MS.gene05234 | MS.gene27308 | 0.825898 | 3.65E-54 | -1.69E-46 |
MS.gene05234 | MS.gene27876 | -0.806251 | 9.01E-50 | -1.69E-46 |
MS.gene05234 | MS.gene28057 | 0.825184 | 5.38E-54 | -1.69E-46 |
MS.gene05234 | MS.gene28290 | 0.811932 | 5.47E-51 | -1.69E-46 |
MS.gene05234 | MS.gene28744 | 0.802534 | 5.36E-49 | -1.69E-46 |
MS.gene05234 | MS.gene29928 | 0.805718 | 1.17E-49 | -1.69E-46 |
MS.gene05234 | MS.gene29992 | -0.813711 | 2.23E-51 | -1.69E-46 |
MS.gene05234 | MS.gene31403 | -0.804968 | 1.67E-49 | -1.69E-46 |
MS.gene05234 | MS.gene32061 | 0.802332 | 5.90E-49 | -1.69E-46 |
MS.gene05234 | MS.gene33139 | 0.808471 | 3.05E-50 | -1.69E-46 |
MS.gene05234 | MS.gene33535 | -0.81196 | 5.39E-51 | -1.69E-46 |
MS.gene05234 | MS.gene33803 | 0.804602 | 2.00E-49 | -1.69E-46 |
MS.gene05234 | MS.gene34092 | -0.828085 | 1.09E-54 | -1.69E-46 |
MS.gene05234 | MS.gene34373 | 0.812852 | 3.44E-51 | -1.69E-46 |
MS.gene05234 | MS.gene36337 | -0.803384 | 3.58E-49 | -1.69E-46 |
MS.gene05234 | MS.gene36419 | 0.802762 | 4.81E-49 | -1.69E-46 |
MS.gene05234 | MS.gene36927 | 0.805549 | 1.27E-49 | -1.69E-46 |
MS.gene05234 | MS.gene37079 | -0.811428 | 7.03E-51 | -1.69E-46 |
MS.gene05234 | MS.gene37743 | 0.883928 | 2.96E-71 | -1.69E-46 |
MS.gene05234 | MS.gene38172 | 0.818666 | 1.74E-52 | -1.69E-46 |
MS.gene05234 | MS.gene38173 | 0.804082 | 2.56E-49 | -1.69E-46 |
MS.gene05234 | MS.gene38174 | 0.801287 | 9.67E-49 | -1.69E-46 |
MS.gene05234 | MS.gene38588 | -0.805231 | 1.48E-49 | -1.69E-46 |
MS.gene05234 | MS.gene40322 | 0.829075 | 6.31E-55 | -1.69E-46 |
MS.gene05234 | MS.gene40493 | 0.811018 | 8.63E-51 | -1.69E-46 |
MS.gene05234 | MS.gene40875 | 0.81394 | 1.98E-51 | -1.69E-46 |
MS.gene05234 | MS.gene40954 | -0.802174 | 6.36E-49 | -1.69E-46 |
MS.gene05234 | MS.gene40958 | -0.808971 | 2.38E-50 | -1.69E-46 |
MS.gene05234 | MS.gene42343 | -0.802552 | 5.32E-49 | -1.69E-46 |
MS.gene05234 | MS.gene43874 | 0.805674 | 1.19E-49 | -1.69E-46 |
MS.gene05234 | MS.gene43940 | 0.825098 | 5.64E-54 | -1.69E-46 |
MS.gene05234 | MS.gene43963 | -0.811631 | 6.36E-51 | -1.69E-46 |
MS.gene05234 | MS.gene44099 | -0.81404 | 1.89E-51 | -1.69E-46 |
MS.gene05234 | MS.gene44721 | 0.81812 | 2.31E-52 | -1.69E-46 |
MS.gene05234 | MS.gene45747 | -0.800811 | 1.21E-48 | -1.69E-46 |
MS.gene05234 | MS.gene46057 | 0.800828 | 1.20E-48 | -1.69E-46 |
MS.gene05234 | MS.gene46106 | 0.813649 | 2.30E-51 | -1.69E-46 |
MS.gene05234 | MS.gene46337 | 0.811492 | 6.81E-51 | -1.69E-46 |
MS.gene05234 | MS.gene46398 | 0.82157 | 3.76E-53 | -1.69E-46 |
MS.gene05234 | MS.gene46433 | 0.820462 | 6.77E-53 | -1.69E-46 |
MS.gene05234 | MS.gene46434 | 0.800007 | 1.76E-48 | -1.69E-46 |
MS.gene05234 | MS.gene46895 | -0.811887 | 5.59E-51 | -1.69E-46 |
MS.gene05234 | MS.gene47349 | 0.807554 | 4.78E-50 | -1.69E-46 |
MS.gene05234 | MS.gene47696 | 0.836799 | 7.57E-57 | -1.69E-46 |
MS.gene05234 | MS.gene48278 | -0.802032 | 6.80E-49 | -1.69E-46 |
MS.gene05234 | MS.gene49181 | 0.843909 | 1.05E-58 | -1.69E-46 |
MS.gene05234 | MS.gene49871 | -0.804719 | 1.89E-49 | -1.69E-46 |
MS.gene05234 | MS.gene49872 | -0.80019 | 1.62E-48 | -1.69E-46 |
MS.gene05234 | MS.gene49873 | -0.805612 | 1.23E-49 | -1.69E-46 |
MS.gene05234 | MS.gene50526 | -0.808686 | 2.74E-50 | -1.69E-46 |
MS.gene05234 | MS.gene51018 | 0.807938 | 3.96E-50 | -1.69E-46 |
MS.gene05234 | MS.gene53510 | -0.800864 | 1.18E-48 | -1.69E-46 |
MS.gene05234 | MS.gene54347 | 0.808272 | 3.36E-50 | -1.69E-46 |
MS.gene05234 | MS.gene54881 | -0.811606 | 6.44E-51 | -1.69E-46 |
MS.gene05234 | MS.gene55013 | 0.831567 | 1.55E-55 | -1.69E-46 |
MS.gene05234 | MS.gene55697 | 0.825009 | 5.92E-54 | -1.69E-46 |
MS.gene05234 | MS.gene55803 | -0.804498 | 2.10E-49 | -1.69E-46 |
MS.gene05234 | MS.gene57569 | -0.81379 | 2.14E-51 | -1.69E-46 |
MS.gene05234 | MS.gene57812 | 0.88237 | 1.10E-70 | -1.69E-46 |
MS.gene05234 | MS.gene58786 | 0.800503 | 1.40E-48 | -1.69E-46 |
MS.gene05234 | MS.gene59053 | 0.815612 | 8.46E-52 | -1.69E-46 |
MS.gene05234 | MS.gene59273 | 0.833314 | 5.73E-56 | -1.69E-46 |
MS.gene05234 | MS.gene59400 | 0.81257 | 3.97E-51 | -1.69E-46 |
MS.gene05234 | MS.gene59920 | 0.812333 | 4.47E-51 | -1.69E-46 |
MS.gene05234 | MS.gene60649 | 0.829265 | 5.67E-55 | -1.69E-46 |
MS.gene05234 | MS.gene60913 | 0.809386 | 1.94E-50 | -1.69E-46 |
MS.gene05234 | MS.gene61492 | 0.810005 | 1.43E-50 | -1.69E-46 |
MS.gene05234 | MS.gene62174 | 0.826305 | 2.92E-54 | -1.69E-46 |
MS.gene05234 | MS.gene62835 | 0.812708 | 3.70E-51 | -1.69E-46 |
MS.gene05234 | MS.gene63292 | 0.836542 | 8.80E-57 | -1.69E-46 |
MS.gene05234 | MS.gene63502 | 0.82751 | 1.50E-54 | -1.69E-46 |
MS.gene05234 | MS.gene63751 | 0.83274 | 7.95E-56 | -1.69E-46 |
MS.gene05234 | MS.gene63928 | 0.830012 | 3.73E-55 | -1.69E-46 |
MS.gene05234 | MS.gene65400 | -0.821797 | 3.33E-53 | -1.69E-46 |
MS.gene05234 | MS.gene65516 | 0.819978 | 8.74E-53 | -1.69E-46 |
MS.gene05234 | MS.gene66304 | 0.811861 | 5.67E-51 | -1.69E-46 |
MS.gene05234 | MS.gene66458 | -0.806655 | 7.40E-50 | -1.69E-46 |
MS.gene05234 | MS.gene67457 | 0.804386 | 2.21E-49 | -1.69E-46 |
MS.gene05234 | MS.gene68121 | 0.822506 | 2.28E-53 | -1.69E-46 |
MS.gene05234 | MS.gene68722 | 0.835446 | 1.67E-56 | -1.69E-46 |
MS.gene05234 | MS.gene68871 | 0.808404 | 3.15E-50 | -1.69E-46 |
MS.gene05234 | MS.gene68872 | 0.806559 | 7.76E-50 | -1.69E-46 |
MS.gene05234 | MS.gene68876 | 0.809031 | 2.31E-50 | -1.69E-46 |
MS.gene05234 | MS.gene68931 | 0.807125 | 5.89E-50 | -1.69E-46 |
MS.gene05234 | MS.gene68932 | 0.813815 | 2.11E-51 | -1.69E-46 |
MS.gene05234 | MS.gene68960 | 0.808995 | 2.35E-50 | -1.69E-46 |
MS.gene05234 | MS.gene70143 | -0.8048 | 1.81E-49 | -1.69E-46 |
MS.gene05234 | MS.gene70201 | -0.81015 | 1.33E-50 | -1.69E-46 |
MS.gene05234 | MS.gene70212 | -0.80475 | 1.86E-49 | -1.69E-46 |
MS.gene05234 | MS.gene70627 | 0.809887 | 1.52E-50 | -1.69E-46 |
MS.gene05234 | MS.gene70809 | -0.811167 | 8.02E-51 | -1.69E-46 |
MS.gene05234 | MS.gene72286 | 0.814565 | 1.44E-51 | -1.69E-46 |
MS.gene05234 | MS.gene74906 | 0.826019 | 3.41E-54 | -1.69E-46 |
MS.gene05234 | MS.gene75310 | 0.813682 | 2.26E-51 | -1.69E-46 |
MS.gene05234 | MS.gene75768 | -0.828876 | 7.05E-55 | -1.69E-46 |
MS.gene05234 | MS.gene76146 | 0.835157 | 1.98E-56 | -1.69E-46 |
MS.gene05234 | MS.gene76425 | -0.801515 | 8.68E-49 | -1.69E-46 |
MS.gene05234 | MS.gene76900 | 0.806734 | 7.12E-50 | -1.69E-46 |
MS.gene05234 | MS.gene77196 | -0.801055 | 1.08E-48 | -1.69E-46 |
MS.gene05234 | MS.gene77397 | 0.802922 | 4.46E-49 | -1.69E-46 |
MS.gene05234 | MS.gene78602 | -0.801941 | 7.10E-49 | -1.69E-46 |
MS.gene05234 | MS.gene79519 | 0.802563 | 5.29E-49 | -1.69E-46 |
MS.gene05234 | MS.gene80609 | 0.803604 | 3.22E-49 | -1.69E-46 |
MS.gene05234 | MS.gene80979 | 0.812362 | 4.41E-51 | -1.69E-46 |
MS.gene05234 | MS.gene81957 | 0.810225 | 1.28E-50 | -1.69E-46 |
MS.gene05234 | MS.gene81971 | -0.807186 | 5.72E-50 | -1.69E-46 |
MS.gene05234 | MS.gene82245 | 0.803815 | 2.91E-49 | -1.69E-46 |
MS.gene05234 | MS.gene83365 | 0.814802 | 1.28E-51 | -1.69E-46 |
MS.gene05234 | MS.gene85220 | 0.822044 | 2.92E-53 | -1.69E-46 |
MS.gene05234 | MS.gene87472 | -0.800843 | 1.19E-48 | -1.69E-46 |
MS.gene05234 | MS.gene87675 | -0.815101 | 1.10E-51 | -1.69E-46 |
MS.gene05234 | MS.gene88405 | 0.814289 | 1.66E-51 | -1.69E-46 |
MS.gene05234 | MS.gene88820 | -0.832981 | 6.93E-56 | -1.69E-46 |
MS.gene05234 | MS.gene88929 | -0.823387 | 1.42E-53 | -1.69E-46 |
MS.gene05234 | MS.gene89320 | 0.800638 | 1.31E-48 | -1.69E-46 |
MS.gene05234 | MS.gene89803 | 0.816081 | 6.64E-52 | -1.69E-46 |
MS.gene05234 | MS.gene90685 | 0.826534 | 2.57E-54 | -1.69E-46 |
MS.gene05234 | MS.gene91963 | -0.808869 | 2.51E-50 | -1.69E-46 |
MS.gene05234 | MS.gene92210 | 0.803499 | 3.39E-49 | -1.69E-46 |
MS.gene05234 | MS.gene92777 | 0.813628 | 2.33E-51 | -1.69E-46 |
MS.gene05234 | MS.gene92938 | 0.828543 | 8.48E-55 | -1.69E-46 |
MS.gene05234 | MS.gene95477 | 0.816203 | 6.24E-52 | -1.69E-46 |
MS.gene05234 | MS.gene95478 | 0.809542 | 1.80E-50 | -1.69E-46 |
MS.gene05234 | MS.gene96198 | -0.801665 | 8.09E-49 | -1.69E-46 |
MS.gene05234 | MS.gene97019 | 0.813633 | 2.32E-51 | -1.69E-46 |
MS.gene05234 | MS.gene97024 | 0.80746 | 5.00E-50 | -1.69E-46 |
MS.gene05234 | MS.gene97180 | 0.833783 | 4.37E-56 | -1.69E-46 |
MS.gene05234 | MS.gene97562 | 0.834288 | 3.27E-56 | -1.69E-46 |
MS.gene05234 | MS.gene98078 | 0.815712 | 8.03E-52 | -1.69E-46 |
MS.gene05234 | MS.gene98139 | -0.828147 | 1.06E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05234.t1 | MTR_6g078290 | 94.836 | 213 | 11 | 0 | 1 | 213 | 1 | 213 | 7.10e-151 | 417 |
MS.gene05234.t1 | MTR_6g078120 | 57.789 | 199 | 82 | 2 | 15 | 212 | 16 | 213 | 2.07e-74 | 224 |
MS.gene05234.t1 | MTR_6g078140 | 58.291 | 199 | 81 | 2 | 15 | 212 | 16 | 213 | 3.61e-74 | 223 |
MS.gene05234.t1 | MTR_6g078280 | 53.266 | 199 | 83 | 6 | 17 | 210 | 17 | 210 | 3.61e-63 | 195 |
MS.gene05234.t1 | MTR_6g078250 | 49.763 | 211 | 94 | 5 | 1 | 209 | 1 | 201 | 1.10e-59 | 186 |
MS.gene05234.t1 | MTR_7g037410 | 47.644 | 191 | 87 | 4 | 22 | 210 | 21 | 200 | 2.67e-54 | 172 |
MS.gene05234.t1 | MTR_6g078260 | 42.929 | 198 | 95 | 5 | 15 | 210 | 16 | 197 | 1.02e-47 | 155 |
MS.gene05234.t1 | MTR_6g078100 | 42.922 | 219 | 100 | 10 | 1 | 210 | 1 | 203 | 3.26e-46 | 152 |
MS.gene05234.t1 | MTR_6g078070 | 41.860 | 215 | 106 | 8 | 1 | 210 | 1 | 201 | 2.22e-44 | 147 |
MS.gene05234.t1 | MTR_3g106585 | 32.420 | 219 | 113 | 10 | 4 | 213 | 6 | 198 | 3.40e-21 | 87.8 |
MS.gene05234.t1 | MTR_2g073010 | 32.683 | 205 | 107 | 8 | 1 | 200 | 8 | 186 | 4.86e-21 | 87.0 |
MS.gene05234.t1 | MTR_6g065460 | 32.864 | 213 | 127 | 7 | 1 | 209 | 1 | 201 | 1.03e-20 | 86.3 |
MS.gene05234.t1 | MTR_3g014870 | 32.569 | 218 | 114 | 10 | 3 | 210 | 7 | 201 | 3.15e-20 | 84.7 |
MS.gene05234.t1 | MTR_0100s0150 | 33.333 | 207 | 116 | 8 | 11 | 210 | 8 | 199 | 4.06e-20 | 84.7 |
MS.gene05234.t1 | MTR_3g014820 | 34.211 | 190 | 101 | 8 | 30 | 210 | 27 | 201 | 1.17e-19 | 83.6 |
MS.gene05234.t1 | MTR_0211s0080 | 33.173 | 208 | 112 | 9 | 11 | 210 | 8 | 196 | 1.62e-19 | 82.8 |
MS.gene05234.t1 | MTR_3g106620 | 28.182 | 220 | 125 | 8 | 3 | 213 | 5 | 200 | 3.06e-19 | 82.4 |
MS.gene05234.t1 | MTR_0084s0030 | 32.093 | 215 | 118 | 9 | 3 | 210 | 7 | 200 | 1.17e-18 | 80.9 |
MS.gene05234.t1 | MTR_8g059790 | 35.638 | 188 | 100 | 9 | 30 | 210 | 29 | 202 | 2.85e-18 | 79.7 |
MS.gene05234.t1 | MTR_0302s0030 | 31.884 | 207 | 120 | 7 | 11 | 210 | 8 | 200 | 4.96e-18 | 79.0 |
MS.gene05234.t1 | MTR_8g461050 | 29.952 | 207 | 124 | 7 | 11 | 210 | 8 | 200 | 1.57e-17 | 77.8 |
MS.gene05234.t1 | MTR_8g060550 | 30.622 | 209 | 118 | 9 | 11 | 210 | 8 | 198 | 2.32e-16 | 74.7 |
MS.gene05234.t1 | MTR_8g461690 | 30.622 | 209 | 118 | 9 | 11 | 210 | 8 | 198 | 2.32e-16 | 74.7 |
MS.gene05234.t1 | MTR_7g108815 | 32.778 | 180 | 98 | 10 | 28 | 200 | 25 | 188 | 8.19e-15 | 70.5 |
MS.gene05234.t1 | MTR_6g078040 | 49.351 | 77 | 35 | 3 | 103 | 177 | 1 | 75 | 1.54e-14 | 67.0 |
MS.gene05234.t1 | MTR_6g059650 | 30.303 | 198 | 112 | 8 | 25 | 213 | 23 | 203 | 5.67e-14 | 68.2 |
MS.gene05234.t1 | MTR_2g072980 | 31.863 | 204 | 117 | 8 | 1 | 202 | 5 | 188 | 3.50e-12 | 63.2 |
MS.gene05234.t1 | MTR_6g059410 | 30.556 | 216 | 118 | 9 | 1 | 209 | 1 | 191 | 6.91e-12 | 62.4 |
MS.gene05234.t1 | MTR_6g017225 | 28.402 | 169 | 103 | 4 | 5 | 172 | 11 | 162 | 9.86e-12 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05234.t1 | AT1G17860 | 45.933 | 209 | 91 | 7 | 4 | 210 | 5 | 193 | 4.20e-50 | 161 |
MS.gene05234.t1 | AT1G73260 | 36.416 | 173 | 96 | 6 | 44 | 212 | 43 | 205 | 4.58e-23 | 92.8 |
MS.gene05234.t1 | AT1G73325 | 31.651 | 218 | 117 | 10 | 5 | 212 | 8 | 203 | 4.10e-17 | 77.0 |
Find 71 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCCTAATAACACCTTTCTT+AGG | 0.178129 | 6.2:-77795126 | None:intergenic |
AATCTTGACATGATGTATTA+AGG | 0.223838 | 6.2:-77795176 | None:intergenic |
GCAGGAATGTTGGGGTCTTT+AGG | 0.226794 | 6.2:+77795379 | MS.gene05234:CDS |
CAGGAATGTTGGGGTCTTTA+GGG | 0.264531 | 6.2:+77795380 | MS.gene05234:CDS |
ACCCTAAGAAAGGTGTTATT+AGG | 0.266748 | 6.2:+77795124 | MS.gene05234:CDS |
TAATATGTATATTGATTTCA+TGG | 0.281019 | 6.2:-77794830 | None:intergenic |
CCCTAAGAAAGGTGTTATTA+GGG | 0.319854 | 6.2:+77795125 | MS.gene05234:CDS |
GTCACTACCGGTGGGGTTCT+TGG | 0.322883 | 6.2:+77795249 | MS.gene05234:CDS |
GACCGTCACATGGGGTTGTT+GGG | 0.328174 | 6.2:-77794978 | None:intergenic |
ACACCTTTCTTAGGGTTAAC+AGG | 0.334323 | 6.2:-77795117 | None:intergenic |
CTCAATGTTGTTGTGGTTGA+GGG | 0.359220 | 6.2:+77795066 | MS.gene05234:CDS |
ATTGTCAACGGTGTCCTTGC+CGG | 0.371760 | 6.2:-77795277 | None:intergenic |
CTGATGTGCCATACAAAGTT+AGG | 0.386416 | 6.2:+77795433 | MS.gene05234:CDS |
AGCTTCTCCGAGCAAGGGTT+GGG | 0.386871 | 6.2:-77794878 | None:intergenic |
GGTTGACACAAAAGGCAAAA+AGG | 0.391711 | 6.2:+77794921 | MS.gene05234:CDS |
CATGTCAAGATTCGACGATA+TGG | 0.398267 | 6.2:+77795187 | MS.gene05234:CDS |
CGACCGTCACATGGGGTTGT+TGG | 0.401200 | 6.2:-77794979 | None:intergenic |
AGGTCATGTGCAGGAATGTT+GGG | 0.410673 | 6.2:+77795370 | MS.gene05234:CDS |
ATCTTGACATGATGTATTAA+GGG | 0.411850 | 6.2:-77795175 | None:intergenic |
CCCTAATAACACCTTTCTTA+GGG | 0.414565 | 6.2:-77795125 | None:intergenic |
GGTCGTGGGCCTTGTGTTGT+TGG | 0.417036 | 6.2:+77794997 | MS.gene05234:CDS |
TTTGTGTCAACCACTTGCTC+AGG | 0.429530 | 6.2:-77794910 | None:intergenic |
ACTCAATGTTGTTGTGGTTG+AGG | 0.433155 | 6.2:+77795065 | MS.gene05234:CDS |
GCAAGGACACCGTTGACAAT+TGG | 0.438091 | 6.2:+77795280 | MS.gene05234:CDS |
TTGTCAACGGTGTCCTTGCC+GGG | 0.438512 | 6.2:-77795276 | None:intergenic |
GGGTCTTTAGGGATAGTAAT+GGG | 0.453756 | 6.2:+77795391 | MS.gene05234:CDS |
GGTTGGAACCTAACTTTGTA+TGG | 0.454358 | 6.2:-77795441 | None:intergenic |
CAGCTTCTCCGAGCAAGGGT+TGG | 0.454758 | 6.2:-77794879 | None:intergenic |
GGGCCTTGTGTTGTTGGTAG+TGG | 0.482437 | 6.2:+77795003 | MS.gene05234:CDS |
ACAACCCCATGTGACGGTCG+TGG | 0.487075 | 6.2:+77794982 | MS.gene05234:CDS |
TTGTCCACCCAACCCTTGCT+CGG | 0.489235 | 6.2:+77794871 | MS.gene05234:CDS |
TCACATGGGGTTGTTGGGAC+TGG | 0.490110 | 6.2:-77794973 | None:intergenic |
ACACCTGTTAACCCTAAGAA+AGG | 0.504784 | 6.2:+77795114 | MS.gene05234:CDS |
TTGAGTGGACATGTCTCGTT+TGG | 0.518641 | 6.2:-77795048 | None:intergenic |
GAGCAAGTGGTTGACACAAA+AGG | 0.520071 | 6.2:+77794913 | MS.gene05234:CDS |
AAATACTTCAAGCAGATGGT+TGG | 0.522101 | 6.2:-77795458 | None:intergenic |
AGCGTCAGCTTCTCCGAGCA+AGG | 0.525965 | 6.2:-77794884 | None:intergenic |
TTGAAAATACTTCAAGCAGA+TGG | 0.530226 | 6.2:-77795462 | None:intergenic |
CAAGGCCCACGACCGTCACA+TGG | 0.530644 | 6.2:-77794988 | None:intergenic |
GAGCAAGGGTTGGGTGGACA+AGG | 0.544353 | 6.2:-77794869 | None:intergenic |
AAGGTCATGTGCAGGAATGT+TGG | 0.544552 | 6.2:+77795369 | MS.gene05234:CDS |
ATGGGGTTGTTGGGACTGGT+CGG | 0.548036 | 6.2:-77794969 | None:intergenic |
CAACCCCATGTGACGGTCGT+GGG | 0.550816 | 6.2:+77794983 | MS.gene05234:CDS |
GGTGGGGTTCTTGGAAATCC+CGG | 0.552765 | 6.2:+77795258 | MS.gene05234:CDS |
TTGATTCCTCATCTGGACAA+TGG | 0.554639 | 6.2:+77795223 | MS.gene05234:CDS |
CAATGGTTTGTCACTACCGG+TGG | 0.561342 | 6.2:+77795240 | MS.gene05234:CDS |
AATGGTTTGTCACTACCGGT+GGG | 0.564160 | 6.2:+77795241 | MS.gene05234:CDS |
GGACAATGGTTTGTCACTAC+CGG | 0.566652 | 6.2:+77795237 | MS.gene05234:CDS |
AAGGCCCACGACCGTCACAT+GGG | 0.567219 | 6.2:-77794987 | None:intergenic |
TGACGCTTCACCTGAGCAAG+TGG | 0.575987 | 6.2:+77794900 | MS.gene05234:CDS |
AATCTTGAACCAATTGTCAA+CGG | 0.580218 | 6.2:-77795289 | None:intergenic |
TGTCTTAATGTTGAGATCAG+TGG | 0.582629 | 6.2:-77795151 | None:intergenic |
GGGGTCTTTAGGGATAGTAA+TGG | 0.589720 | 6.2:+77795390 | MS.gene05234:CDS |
TTCTCCGAGCAAGGGTTGGG+TGG | 0.598373 | 6.2:-77794875 | None:intergenic |
GTCCCAACAACCCCATGTGA+CGG | 0.605160 | 6.2:+77794976 | MS.gene05234:CDS |
AAACCACTACCAACAACACA+AGG | 0.606805 | 6.2:-77795006 | None:intergenic |
ATGTCCACTCAATGTTGTTG+TGG | 0.608157 | 6.2:+77795059 | MS.gene05234:CDS |
GACAAACCATTGTCCAGATG+AGG | 0.609229 | 6.2:-77795229 | None:intergenic |
TGCAGAAATCACATACCGTA+GGG | 0.614159 | 6.2:-77795347 | None:intergenic |
GCGTCAGCTTCTCCGAGCAA+GGG | 0.616662 | 6.2:-77794883 | None:intergenic |
TCAACCACAACAACATTGAG+TGG | 0.618826 | 6.2:-77795063 | None:intergenic |
GGTCATGTGCAGGAATGTTG+GGG | 0.620344 | 6.2:+77795371 | MS.gene05234:CDS |
ATTTCTGCAAGGTCATGTGC+AGG | 0.628252 | 6.2:+77795361 | MS.gene05234:CDS |
TTGCAGAAATCACATACCGT+AGG | 0.628538 | 6.2:-77795348 | None:intergenic |
TACGGTATGTGATTTCTGCA+AGG | 0.630885 | 6.2:+77795350 | MS.gene05234:CDS |
GGGATTTCCAAGAACCCCAC+CGG | 0.635438 | 6.2:-77795256 | None:intergenic |
AGGCCCACGACCGTCACATG+GGG | 0.644940 | 6.2:-77794986 | None:intergenic |
TAGTAATGGGAACCAGCGTG+TGG | 0.674297 | 6.2:+77795404 | MS.gene05234:CDS |
ATGGTTTGTCACTACCGGTG+GGG | 0.675340 | 6.2:+77795242 | MS.gene05234:CDS |
CATCAGTGAGAGCCACACGC+TGG | 0.681901 | 6.2:-77795416 | None:intergenic |
GGTTCTTGGAAATCCCGGCA+AGG | 0.687124 | 6.2:+77795263 | MS.gene05234:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AATCTTGACATGATGTATTA+AGG | - | chr6.2:77795179-77795198 | None:intergenic | 25.0% |
! | ATCTTGACATGATGTATTAA+GGG | - | chr6.2:77795178-77795197 | None:intergenic | 25.0% |
AATCTTGAACCAATTGTCAA+CGG | - | chr6.2:77795292-77795311 | None:intergenic | 30.0% | |
ACACAAAAGGCAAAAAGGTT+CGG | + | chr6.2:77794926-77794945 | MS.gene05234:CDS | 35.0% | |
ACCCTAATAACACCTTTCTT+AGG | - | chr6.2:77795129-77795148 | None:intergenic | 35.0% | |
CCCTAATAACACCTTTCTTA+GGG | - | chr6.2:77795128-77795147 | None:intergenic | 35.0% | |
TGTCTTAATGTTGAGATCAG+TGG | - | chr6.2:77795154-77795173 | None:intergenic | 35.0% | |
!! | ACCCTAAGAAAGGTGTTATT+AGG | + | chr6.2:77795124-77795143 | MS.gene05234:CDS | 35.0% |
!! | CCCTAAGAAAGGTGTTATTA+GGG | + | chr6.2:77795125-77795144 | MS.gene05234:CDS | 35.0% |
!!! | GATGATTTTGATTCCTCATC+TGG | + | chr6.2:77795216-77795235 | MS.gene05234:CDS | 35.0% |
AAACCACTACCAACAACACA+AGG | - | chr6.2:77795009-77795028 | None:intergenic | 40.0% | |
ACACCTGTTAACCCTAAGAA+AGG | + | chr6.2:77795114-77795133 | MS.gene05234:CDS | 40.0% | |
ACACCTTTCTTAGGGTTAAC+AGG | - | chr6.2:77795120-77795139 | None:intergenic | 40.0% | |
ACTCAATGTTGTTGTGGTTG+AGG | + | chr6.2:77795065-77795084 | MS.gene05234:CDS | 40.0% | |
ATGTCCACTCAATGTTGTTG+TGG | + | chr6.2:77795059-77795078 | MS.gene05234:CDS | 40.0% | |
CACAAAAGGCAAAAAGGTTC+GGG | + | chr6.2:77794927-77794946 | MS.gene05234:CDS | 40.0% | |
CATGTCAAGATTCGACGATA+TGG | + | chr6.2:77795187-77795206 | MS.gene05234:CDS | 40.0% | |
CTCAATGTTGTTGTGGTTGA+GGG | + | chr6.2:77795066-77795085 | MS.gene05234:CDS | 40.0% | |
CTGATGTGCCATACAAAGTT+AGG | + | chr6.2:77795433-77795452 | MS.gene05234:CDS | 40.0% | |
GGTTGACACAAAAGGCAAAA+AGG | + | chr6.2:77794921-77794940 | MS.gene05234:CDS | 40.0% | |
GGTTGGAACCTAACTTTGTA+TGG | - | chr6.2:77795444-77795463 | None:intergenic | 40.0% | |
TACGGTATGTGATTTCTGCA+AGG | + | chr6.2:77795350-77795369 | MS.gene05234:CDS | 40.0% | |
TCAACCACAACAACATTGAG+TGG | - | chr6.2:77795066-77795085 | None:intergenic | 40.0% | |
TGCAGAAATCACATACCGTA+GGG | - | chr6.2:77795350-77795369 | None:intergenic | 40.0% | |
TTGATTCCTCATCTGGACAA+TGG | + | chr6.2:77795223-77795242 | MS.gene05234:CDS | 40.0% | |
TTGCAGAAATCACATACCGT+AGG | - | chr6.2:77795351-77795370 | None:intergenic | 40.0% | |
! | GGGTCTTTAGGGATAGTAAT+GGG | + | chr6.2:77795391-77795410 | MS.gene05234:CDS | 40.0% |
! | TAAGCTTGTGTTTTGCCCTA+CGG | + | chr6.2:77795332-77795351 | MS.gene05234:CDS | 40.0% |
AAGGTCATGTGCAGGAATGT+TGG | + | chr6.2:77795369-77795388 | MS.gene05234:CDS | 45.0% | |
AGGTCATGTGCAGGAATGTT+GGG | + | chr6.2:77795370-77795389 | MS.gene05234:CDS | 45.0% | |
ATTTCTGCAAGGTCATGTGC+AGG | + | chr6.2:77795361-77795380 | MS.gene05234:CDS | 45.0% | |
CAGGAATGTTGGGGTCTTTA+GGG | + | chr6.2:77795380-77795399 | MS.gene05234:CDS | 45.0% | |
GACAAACCATTGTCCAGATG+AGG | - | chr6.2:77795232-77795251 | None:intergenic | 45.0% | |
GAGCAAGTGGTTGACACAAA+AGG | + | chr6.2:77794913-77794932 | MS.gene05234:CDS | 45.0% | |
TTGAGTGGACATGTCTCGTT+TGG | - | chr6.2:77795051-77795070 | None:intergenic | 45.0% | |
TTTGTGTCAACCACTTGCTC+AGG | - | chr6.2:77794913-77794932 | None:intergenic | 45.0% | |
! | AATGGTTTGTCACTACCGGT+GGG | + | chr6.2:77795241-77795260 | MS.gene05234:CDS | 45.0% |
! | GGACAATGGTTTGTCACTAC+CGG | + | chr6.2:77795237-77795256 | MS.gene05234:CDS | 45.0% |
! | GGGGTCTTTAGGGATAGTAA+TGG | + | chr6.2:77795390-77795409 | MS.gene05234:CDS | 45.0% |
AAAGGCAAAAAGGTTCGGGC+TGG | + | chr6.2:77794931-77794950 | MS.gene05234:CDS | 50.0% | |
ATTGTCAACGGTGTCCTTGC+CGG | - | chr6.2:77795280-77795299 | None:intergenic | 50.0% | |
GCAAGGACACCGTTGACAAT+TGG | + | chr6.2:77795280-77795299 | MS.gene05234:CDS | 50.0% | |
GCAGGAATGTTGGGGTCTTT+AGG | + | chr6.2:77795379-77795398 | MS.gene05234:CDS | 50.0% | |
GGTCATGTGCAGGAATGTTG+GGG | + | chr6.2:77795371-77795390 | MS.gene05234:CDS | 50.0% | |
! | ATGGTTTGTCACTACCGGTG+GGG | + | chr6.2:77795242-77795261 | MS.gene05234:CDS | 50.0% |
! | CAATGGTTTGTCACTACCGG+TGG | + | chr6.2:77795240-77795259 | MS.gene05234:CDS | 50.0% |
! | GTTGAGGGTTTTCGTGGTCA+AGG | + | chr6.2:77795081-77795100 | MS.gene05234:CDS | 50.0% |
! | GTTGTGGTTGAGGGTTTTCG+TGG | + | chr6.2:77795075-77795094 | MS.gene05234:CDS | 50.0% |
! | TAGTAATGGGAACCAGCGTG+TGG | + | chr6.2:77795404-77795423 | MS.gene05234:CDS | 50.0% |
AGCTTCTCCGAGCAAGGGTT+GGG | - | chr6.2:77794881-77794900 | None:intergenic | 55.0% | |
GACCGTCACATGGGGTTGTT+GGG | - | chr6.2:77794981-77795000 | None:intergenic | 55.0% | |
GGGATTTCCAAGAACCCCAC+CGG | - | chr6.2:77795259-77795278 | None:intergenic | 55.0% | |
GGTGGGGTTCTTGGAAATCC+CGG | + | chr6.2:77795258-77795277 | MS.gene05234:CDS | 55.0% | |
GGTTCTTGGAAATCCCGGCA+AGG | + | chr6.2:77795263-77795282 | MS.gene05234:CDS | 55.0% | |
GTCCCAACAACCCCATGTGA+CGG | + | chr6.2:77794976-77794995 | MS.gene05234:CDS | 55.0% | |
TCACATGGGGTTGTTGGGAC+TGG | - | chr6.2:77794976-77794995 | None:intergenic | 55.0% | |
TGACGCTTCACCTGAGCAAG+TGG | + | chr6.2:77794900-77794919 | MS.gene05234:CDS | 55.0% | |
TTGTCAACGGTGTCCTTGCC+GGG | - | chr6.2:77795279-77795298 | None:intergenic | 55.0% | |
TTGTCCACCCAACCCTTGCT+CGG | + | chr6.2:77794871-77794890 | MS.gene05234:CDS | 55.0% | |
! | ATGGGGTTGTTGGGACTGGT+CGG | - | chr6.2:77794972-77794991 | None:intergenic | 55.0% |
! | GGGCCTTGTGTTGTTGGTAG+TGG | + | chr6.2:77795003-77795022 | MS.gene05234:CDS | 55.0% |
AAGGCCCACGACCGTCACAT+GGG | - | chr6.2:77794990-77795009 | None:intergenic | 60.0% | |
ACAACCCCATGTGACGGTCG+TGG | + | chr6.2:77794982-77795001 | MS.gene05234:CDS | 60.0% | |
AGCGTCAGCTTCTCCGAGCA+AGG | - | chr6.2:77794887-77794906 | None:intergenic | 60.0% | |
CAACCCCATGTGACGGTCGT+GGG | + | chr6.2:77794983-77795002 | MS.gene05234:CDS | 60.0% | |
CAGCTTCTCCGAGCAAGGGT+TGG | - | chr6.2:77794882-77794901 | None:intergenic | 60.0% | |
CATCAGTGAGAGCCACACGC+TGG | - | chr6.2:77795419-77795438 | None:intergenic | 60.0% | |
CGACCGTCACATGGGGTTGT+TGG | - | chr6.2:77794982-77795001 | None:intergenic | 60.0% | |
GAGCAAGGGTTGGGTGGACA+AGG | - | chr6.2:77794872-77794891 | None:intergenic | 60.0% | |
GCGTCAGCTTCTCCGAGCAA+GGG | - | chr6.2:77794886-77794905 | None:intergenic | 60.0% | |
GTCACTACCGGTGGGGTTCT+TGG | + | chr6.2:77795249-77795268 | MS.gene05234:CDS | 60.0% | |
TTCTCCGAGCAAGGGTTGGG+TGG | - | chr6.2:77794878-77794897 | None:intergenic | 60.0% | |
! | GGTCGTGGGCCTTGTGTTGT+TGG | + | chr6.2:77794997-77795016 | MS.gene05234:CDS | 60.0% |
AGGCCCACGACCGTCACATG+GGG | - | chr6.2:77794989-77795008 | None:intergenic | 65.0% | |
CAAGGCCCACGACCGTCACA+TGG | - | chr6.2:77794991-77795010 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 77794832 | 77795473 | 77794832 | ID=MS.gene05234 |
chr6.2 | mRNA | 77794832 | 77795473 | 77794832 | ID=MS.gene05234.t1;Parent=MS.gene05234 |
chr6.2 | exon | 77794832 | 77795473 | 77794832 | ID=MS.gene05234.t1.exon1;Parent=MS.gene05234.t1 |
chr6.2 | CDS | 77794832 | 77795473 | 77794832 | ID=cds.MS.gene05234.t1;Parent=MS.gene05234.t1 |
Gene Sequence |
Protein sequence |