Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08571.t1 | AIY27528.1 | 100 | 250 | 0 | 0 | 1 | 250 | 1 | 250 | 8.20E-141 | 509.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08571.t1 | P48534 | 95.2 | 250 | 12 | 0 | 1 | 250 | 1 | 250 | 2.1e-137 | 489.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08571.t1 | A0A0H3UW77 | 100.0 | 250 | 0 | 0 | 1 | 250 | 1 | 250 | 5.9e-141 | 509.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055533 | MS.gene08571 | -0.807342 | 5.30E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08571 | MS.gene015008 | PPI |
| MS.gene08571 | MS.gene066508 | PPI |
| MS.gene08571 | MS.gene32806 | PPI |
| MS.gene08571 | MS.gene37417 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08571.t1 | MTR_4g061140 | 99.200 | 250 | 2 | 0 | 1 | 250 | 1 | 250 | 0.0 | 506 |
| MS.gene08571.t1 | MTR_4g061140 | 99.187 | 246 | 2 | 0 | 1 | 246 | 1 | 246 | 0.0 | 498 |
| MS.gene08571.t1 | MTR_4g061140 | 96.296 | 216 | 8 | 0 | 35 | 250 | 1 | 216 | 1.43e-153 | 426 |
| MS.gene08571.t1 | MTR_5g022510 | 64.167 | 240 | 85 | 1 | 8 | 247 | 6 | 244 | 8.95e-114 | 328 |
| MS.gene08571.t1 | MTR_4g073410 | 63.223 | 242 | 88 | 1 | 7 | 248 | 6 | 246 | 7.53e-110 | 318 |
| MS.gene08571.t1 | MTR_5g022510 | 64.251 | 207 | 73 | 1 | 41 | 247 | 14 | 219 | 1.45e-96 | 283 |
| MS.gene08571.t1 | MTR_5g008440 | 81.437 | 167 | 17 | 1 | 80 | 246 | 29 | 181 | 3.40e-91 | 267 |
| MS.gene08571.t1 | MTR_3g088160 | 46.094 | 256 | 112 | 6 | 16 | 246 | 101 | 355 | 6.60e-68 | 214 |
| MS.gene08571.t1 | MTR_3g088160 | 46.094 | 256 | 112 | 6 | 16 | 246 | 101 | 355 | 1.84e-67 | 215 |
| MS.gene08571.t1 | MTR_3g107060 | 39.407 | 236 | 120 | 7 | 20 | 246 | 93 | 314 | 3.72e-40 | 141 |
| MS.gene08571.t1 | MTR_4g122640 | 30.233 | 215 | 106 | 8 | 73 | 248 | 112 | 321 | 6.06e-15 | 73.6 |
| MS.gene08571.t1 | MTR_0155s0040 | 28.986 | 207 | 112 | 7 | 73 | 249 | 100 | 301 | 1.17e-14 | 72.4 |
| MS.gene08571.t1 | MTR_8g087680 | 68.293 | 41 | 13 | 0 | 66 | 106 | 32 | 72 | 1.05e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08571.t1 | AT1G07890 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.29e-155 | 432 |
| MS.gene08571.t1 | AT1G07890 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.29e-155 | 432 |
| MS.gene08571.t1 | AT1G07890 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.29e-155 | 432 |
| MS.gene08571.t1 | AT1G07890 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.29e-155 | 432 |
| MS.gene08571.t1 | AT1G07890 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.29e-155 | 432 |
| MS.gene08571.t1 | AT1G07890 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.29e-155 | 432 |
| MS.gene08571.t1 | AT1G07890 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.29e-155 | 432 |
| MS.gene08571.t1 | AT1G07890 | 80.567 | 247 | 48 | 0 | 1 | 247 | 1 | 247 | 7.87e-154 | 428 |
| MS.gene08571.t1 | AT3G09640 | 81.377 | 247 | 45 | 1 | 3 | 249 | 4 | 249 | 2.05e-149 | 417 |
| MS.gene08571.t1 | AT3G09640 | 81.377 | 247 | 45 | 1 | 3 | 249 | 4 | 249 | 2.05e-149 | 417 |
| MS.gene08571.t1 | AT4G35000 | 66.942 | 242 | 79 | 1 | 6 | 247 | 4 | 244 | 1.34e-116 | 335 |
| MS.gene08571.t1 | AT4G35970 | 60.166 | 241 | 94 | 2 | 7 | 247 | 4 | 242 | 1.99e-100 | 294 |
| MS.gene08571.t1 | AT4G35970 | 59.361 | 219 | 87 | 2 | 7 | 225 | 4 | 220 | 1.74e-89 | 264 |
| MS.gene08571.t1 | AT1G77490 | 45.865 | 266 | 118 | 5 | 6 | 246 | 76 | 340 | 9.72e-68 | 215 |
| MS.gene08571.t1 | AT1G77490 | 45.865 | 266 | 118 | 5 | 6 | 246 | 76 | 340 | 1.04e-67 | 215 |
| MS.gene08571.t1 | AT4G08390 | 46.484 | 256 | 111 | 6 | 16 | 246 | 107 | 361 | 8.16e-66 | 209 |
| MS.gene08571.t1 | AT4G08390 | 46.484 | 256 | 111 | 6 | 16 | 246 | 107 | 361 | 8.16e-66 | 209 |
| MS.gene08571.t1 | AT4G08390 | 46.484 | 256 | 111 | 6 | 16 | 246 | 107 | 361 | 8.16e-66 | 209 |
| MS.gene08571.t1 | AT4G08390 | 46.484 | 256 | 111 | 6 | 16 | 246 | 106 | 360 | 1.04e-65 | 208 |
| MS.gene08571.t1 | AT4G08390 | 42.969 | 256 | 94 | 8 | 16 | 246 | 107 | 335 | 1.21e-53 | 177 |
| MS.gene08571.t1 | AT4G32320 | 36.653 | 251 | 125 | 7 | 5 | 246 | 98 | 323 | 1.36e-38 | 137 |
| MS.gene08571.t1 | AT4G31760 | 32.663 | 199 | 84 | 7 | 91 | 246 | 118 | 309 | 2.38e-17 | 80.1 |
| MS.gene08571.t1 | AT3G28200 | 26.786 | 280 | 156 | 10 | 12 | 247 | 26 | 300 | 1.78e-14 | 72.0 |
| MS.gene08571.t1 | AT4G33420 | 32.474 | 194 | 96 | 8 | 82 | 245 | 119 | 307 | 1.21e-13 | 69.7 |
| MS.gene08571.t1 | AT4G09010 | 27.519 | 258 | 110 | 8 | 28 | 246 | 43 | 262 | 1.27e-13 | 69.3 |
| MS.gene08571.t1 | AT4G33420 | 32.474 | 194 | 96 | 8 | 82 | 245 | 166 | 354 | 1.43e-13 | 69.7 |
| MS.gene08571.t1 | AT4G09010 | 27.519 | 258 | 110 | 8 | 28 | 246 | 108 | 327 | 2.27e-13 | 69.3 |
| MS.gene08571.t1 | AT4G09010 | 27.519 | 258 | 110 | 8 | 28 | 246 | 155 | 374 | 4.79e-13 | 68.6 |
Find 85 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGTTGCTGTTGAGATTAC+TGG | 0.232804 | 4.1:+38142754 | MS.gene08571:CDS |
| TGATATCGCTGTTAGGCTTT+TGG | 0.241502 | 4.1:+38142583 | MS.gene08571:CDS |
| TCGCCTTCTCAACAGCCTTT+TGG | 0.306455 | 4.1:-38141988 | None:intergenic |
| AAGCTCAGCTTGGTGCTTGA+TGG | 0.336855 | 4.1:-38142537 | None:intergenic |
| TCAACAAGTGGGCGGAATAC+AGG | 0.362317 | 4.1:-38144202 | None:intergenic |
| CGCTCCTCTTATGCTCCGTT+TGG | 0.364102 | 4.1:+38142048 | MS.gene08571:CDS |
| ACAAAGACTGGTGGTCCTTT+CGG | 0.381599 | 4.1:+38142512 | MS.gene08571:CDS |
| CGACCCTCTGGTGGTGGCTC+AGG | 0.382379 | 4.1:-38143435 | None:intergenic |
| GCTGCACACAAGGAGCGTTC+TGG | 0.387014 | 4.1:+38143962 | MS.gene08571:CDS |
| CAGGACATCGTTGCTTTGTC+TGG | 0.410100 | 4.1:+38143614 | MS.gene08571:CDS |
| TCTTCAGTTGCCAAGTGATA+AGG | 0.411660 | 4.1:+38144165 | MS.gene08571:CDS |
| AAATCAGCATAGCTAATGAT+TGG | 0.419318 | 4.1:-38142626 | None:intergenic |
| ACGGTCTTGATATCGCTGTT+AGG | 0.422947 | 4.1:+38142576 | MS.gene08571:CDS |
| TGCAGGTTCTGACCATTTGA+GGG | 0.426677 | 4.1:+38143559 | MS.gene08571:intron |
| TTGTGTAGATGGCACTCTGC+TGG | 0.426968 | 4.1:+38142473 | MS.gene08571:intron |
| TGAAATGATTAGGGAGTTGT+TGG | 0.432563 | 4.1:+38144123 | MS.gene08571:intron |
| CACTAACCCTTGGTGGCATC+AGG | 0.433823 | 4.1:-38143462 | None:intergenic |
| CCGGGGTGGAAAGGAACTTC+AGG | 0.436434 | 4.1:-38142781 | None:intergenic |
| AGCGATATCAAGACCGTTGT+TGG | 0.440920 | 4.1:-38142570 | None:intergenic |
| GGATGTGTTTGGCAAAGCTA+TGG | 0.443040 | 4.1:+38143580 | MS.gene08571:CDS |
| ATTGGGAATTGCTCCTTAAG+AGG | 0.447187 | 4.1:-38142608 | None:intergenic |
| TTTGATTCAAAGACAAAGAC+TGG | 0.447588 | 4.1:+38142500 | MS.gene08571:CDS |
| CAAGGAGCGTTCTGGATTTG+AGG | 0.450558 | 4.1:+38143970 | MS.gene08571:CDS |
| GGAGTTGTTGGGTGGTGAGA+AGG | 0.456331 | 4.1:+38144135 | MS.gene08571:CDS |
| TTGCAGGTTCTGACCATTTG+AGG | 0.456831 | 4.1:+38143558 | MS.gene08571:intron |
| GGCAAGCGACCCTCTGGTGG+TGG | 0.457136 | 4.1:-38143441 | None:intergenic |
| GGTAATCAGCACTCACGGTT+GGG | 0.463922 | 4.1:-38141967 | None:intergenic |
| GCATCAGGCAAGCGACCCTC+TGG | 0.466554 | 4.1:-38143447 | None:intergenic |
| GACCATTTGAGGGATGTGTT+TGG | 0.471367 | 4.1:+38143569 | MS.gene08571:CDS |
| ATCAAAAGCTATCTGAGCTT+GGG | 0.472564 | 4.1:+38144389 | MS.gene08571:CDS |
| CATCAAAAGCTATCTGAGCT+TGG | 0.474904 | 4.1:+38144388 | MS.gene08571:CDS |
| CTCAAAAGTGCCTTATCACT+TGG | 0.477819 | 4.1:-38144175 | None:intergenic |
| TACGCCAAACGGAGCATAAG+AGG | 0.478986 | 4.1:-38142052 | None:intergenic |
| AAAATAAAACTTACGCCAAA+CGG | 0.488936 | 4.1:-38142063 | None:intergenic |
| TATCACTTGGCAACTGAAGA+AGG | 0.489890 | 4.1:-38144162 | None:intergenic |
| GATGTGTTTGGCAAAGCTAT+GGG | 0.498498 | 4.1:+38143581 | MS.gene08571:CDS |
| CACCATGAGCAAGCTCAGCT+TGG | 0.499594 | 4.1:-38142547 | None:intergenic |
| AATCAGCATAGCTAATGATT+GGG | 0.504612 | 4.1:-38142625 | None:intergenic |
| TGCCAAACACATCCCTCAAA+TGG | 0.508400 | 4.1:-38143571 | None:intergenic |
| TTTGTGGTTATGCAGTTGGC+TGG | 0.509181 | 4.1:+38142730 | MS.gene08571:intron |
| AAGGAGCGTTCTGGATTTGA+GGG | 0.511703 | 4.1:+38143971 | MS.gene08571:CDS |
| CACCAAGCTGAGCTTGCTCA+TGG | 0.514212 | 4.1:+38142545 | MS.gene08571:CDS |
| AGCTATGGGGCTTAGTGACC+AGG | 0.514461 | 4.1:+38143595 | MS.gene08571:CDS |
| TAGTAAACGTACCTCCCTAC+CGG | 0.522438 | 4.1:-38142800 | None:intergenic |
| AAGTTCCTTTCCACCCCGGT+AGG | 0.526103 | 4.1:+38142785 | MS.gene08571:CDS |
| ATGAGAGGATTAGAAGTCCA+TGG | 0.528007 | 4.1:-38143995 | None:intergenic |
| CAACAAGTGGGCGGAATACA+GGG | 0.530888 | 4.1:-38144201 | None:intergenic |
| GACATCGTTGCTTTGTCTGG+TGG | 0.531812 | 4.1:+38143617 | MS.gene08571:CDS |
| ACCTCCCTACCGGGGTGGAA+AGG | 0.535670 | 4.1:-38142790 | None:intergenic |
| AGTAAACGTACCTCCCTACC+GGG | 0.538079 | 4.1:-38142799 | None:intergenic |
| CGTGAGTGCTGATTACCAAA+AGG | 0.551875 | 4.1:+38141973 | MS.gene08571:CDS |
| CAGACAAAGCAACGATGTCC+TGG | 0.552668 | 4.1:-38143613 | None:intergenic |
| TCCAGAACACTAACCCTTGG+TGG | 0.552948 | 4.1:-38143469 | None:intergenic |
| TCGCTTGCCTGATGCCACCA+AGG | 0.554221 | 4.1:+38143455 | MS.gene08571:CDS |
| TGGTAATCAGCACTCACGGT+TGG | 0.557293 | 4.1:-38141968 | None:intergenic |
| CGCTTGCCTGATGCCACCAA+GGG | 0.557551 | 4.1:+38143456 | MS.gene08571:CDS |
| CACAGATTTGCAGAAGCCTA+AGG | 0.566856 | 4.1:+38144516 | MS.gene08571:intron |
| AGTTCCTTTCCACCCCGGTA+GGG | 0.567360 | 4.1:+38142786 | MS.gene08571:CDS |
| TCAGGCAAGCGACCCTCTGG+TGG | 0.568572 | 4.1:-38143444 | None:intergenic |
| GCAGCATATTTCTCAACAAG+TGG | 0.582870 | 4.1:-38144214 | None:intergenic |
| TTACCAAAAGGCTGTTGAGA+AGG | 0.586567 | 4.1:+38141985 | MS.gene08571:CDS |
| TCCTTTCCACCCCGGTAGGG+AGG | 0.587045 | 4.1:+38142789 | MS.gene08571:CDS |
| TTGGTAGGGAGCTGCACACA+AGG | 0.589477 | 4.1:+38143952 | MS.gene08571:intron |
| GTTGCTGTTGAGATTACTGG+TGG | 0.592645 | 4.1:+38142757 | MS.gene08571:CDS |
| TAGCTATGCTGATTTCTACC+AGG | 0.595859 | 4.1:+38142634 | MS.gene08571:CDS |
| CAAGCCTGAGCCACCACCAG+AGG | 0.599599 | 4.1:+38143431 | MS.gene08571:CDS |
| GTTCTGGATTTGAGGGCCCA+TGG | 0.602005 | 4.1:+38143978 | MS.gene08571:CDS |
| CTTGCTCATGGTGCCAACAA+CGG | 0.603159 | 4.1:+38142557 | MS.gene08571:CDS |
| GAAATGATTAGGGAGTTGTT+GGG | 0.614317 | 4.1:+38144124 | MS.gene08571:intron |
| TGAGAGGATTAGAAGTCCAT+GGG | 0.619251 | 4.1:-38143994 | None:intergenic |
| AAGCCTGAGCCACCACCAGA+GGG | 0.625588 | 4.1:+38143432 | MS.gene08571:CDS |
| CCTGAAGTTCCTTTCCACCC+CGG | 0.635685 | 4.1:+38142781 | MS.gene08571:CDS |
| GATTCAAAGACAAAGACTGG+TGG | 0.639755 | 4.1:+38142503 | MS.gene08571:CDS |
| TTTCTTTGCTGATTATGCCG+AGG | 0.640041 | 4.1:+38144363 | MS.gene08571:CDS |
| CAGCATATTTCTCAACAAGT+GGG | 0.640937 | 4.1:-38144213 | None:intergenic |
| AGGCTGTTGAGAAGGCGAAG+AGG | 0.646869 | 4.1:+38141993 | MS.gene08571:CDS |
| ATGTGTTTGGCAAAGCTATG+GGG | 0.650358 | 4.1:+38143582 | MS.gene08571:CDS |
| AGTCAATACATACAATGGTG+TGG | 0.652135 | 4.1:-38143640 | None:intergenic |
| AAGGCGAAGAGGAAGCTCAG+AGG | 0.652638 | 4.1:+38142004 | MS.gene08571:CDS |
| TGGTGCTTGATGGTTCCGAA+AGG | 0.654886 | 4.1:-38142527 | None:intergenic |
| TTGTTGGGTGGTGAGAAGGA+AGG | 0.658316 | 4.1:+38144139 | MS.gene08571:CDS |
| AACGTACCTCCCTACCGGGG+TGG | 0.660383 | 4.1:-38142795 | None:intergenic |
| ATGATTAGGGAGTTGTTGGG+TGG | 0.662546 | 4.1:+38144127 | MS.gene08571:intron |
| CATATTTCTCAACAAGTGGG+CGG | 0.689114 | 4.1:-38144210 | None:intergenic |
| GTAAACGTACCTCCCTACCG+GGG | 0.769408 | 4.1:-38142798 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CCAAATATAAAAAATAAATA+GGG | - | chr4.1:38143372-38143391 | None:intergenic | 10.0% |
| !! | TATATATATATTTATCTTCA+AGG | + | chr4.1:38144422-38144441 | MS.gene08571:intron | 10.0% |
| !! | TCCAAATATAAAAAATAAAT+AGG | - | chr4.1:38143373-38143392 | None:intergenic | 10.0% |
| !!! | ATTTAAAACACAAAAAAAAT+AGG | - | chr4.1:38144078-38144097 | None:intergenic | 10.0% |
| !!! | TATTTATTTTTTATATTTGG+AGG | + | chr4.1:38143372-38143391 | MS.gene08571:intron | 10.0% |
| !!! | TTTAAAACACAAAAAAAATA+GGG | - | chr4.1:38144077-38144096 | None:intergenic | 10.0% |
| !! | AGGAATATTAAATATACATA+CGG | - | chr4.1:38144239-38144258 | None:intergenic | 15.0% |
| !!! | ATCTGTTTGAATATTTTTTT+GGG | + | chr4.1:38142275-38142294 | MS.gene08571:intron | 15.0% |
| !!! | ATTATCAAAGTTTTAAACTA+TGG | + | chr4.1:38143728-38143747 | MS.gene08571:intron | 15.0% |
| !!! | ATTATCTAAGTTTTAAACTA+TGG | + | chr4.1:38143792-38143811 | MS.gene08571:intron | 15.0% |
| !!! | CCCTATTTATTTTTTATATT+TGG | + | chr4.1:38143369-38143388 | MS.gene08571:intron | 15.0% |
| !! | AACAAAAACAAAAAAACTCA+AGG | - | chr4.1:38142999-38143018 | None:intergenic | 20.0% |
| !! | ATTAAAGTCAATACATACAA+TGG | - | chr4.1:38143648-38143667 | None:intergenic | 20.0% |
| !! | GATAATTAAACCAAAACAAA+AGG | - | chr4.1:38143407-38143426 | None:intergenic | 20.0% |
| !! | TATACTTAATGTAATTGGTA+GGG | + | chr4.1:38143938-38143957 | MS.gene08571:intron | 20.0% |
| !! | TTATACTTAATGTAATTGGT+AGG | + | chr4.1:38143937-38143956 | MS.gene08571:intron | 20.0% |
| !! | TTGGTTATACTTAATGTAAT+TGG | + | chr4.1:38143933-38143952 | MS.gene08571:intron | 20.0% |
| !! | TTGTTAGATCTTAGTTATTT+CGG | + | chr4.1:38142686-38142705 | MS.gene08571:intron | 20.0% |
| !!! | AATATTTTTTTGGGATGAAT+CGG | + | chr4.1:38142284-38142303 | MS.gene08571:intron | 20.0% |
| !!! | AATCCTTTTCATCATATTAT+TGG | + | chr4.1:38144264-38144283 | MS.gene08571:intron | 20.0% |
| !!! | ATGATGTTTCTTTAACTTTT+TGG | + | chr4.1:38142880-38142899 | MS.gene08571:intron | 20.0% |
| !!! | ATGATTTGACAATCAATTTT+TGG | + | chr4.1:38142933-38142952 | MS.gene08571:intron | 20.0% |
| !!! | ATGATTTGTTTGAGATTTTT+TGG | + | chr4.1:38142247-38142266 | MS.gene08571:intron | 20.0% |
| !!! | ATTTTCTGCTTATTTTTTGT+AGG | + | chr4.1:38142081-38142100 | MS.gene08571:intron | 20.0% |
| !!! | GATCTGTTTGAATATTTTTT+TGG | + | chr4.1:38142274-38142293 | MS.gene08571:intron | 20.0% |
| !!! | TTTGTTTTGGTTTAATTATC+AGG | + | chr4.1:38143407-38143426 | MS.gene08571:intron | 20.0% |
| ! | AAAATAAAACTTACGCCAAA+CGG | - | chr4.1:38142066-38142085 | None:intergenic | 25.0% |
| ! | AAACAACTACAATCAATTGT+AGG | - | chr4.1:38143514-38143533 | None:intergenic | 25.0% |
| ! | AAACGCATTTGCAATTATTA+CGG | + | chr4.1:38143088-38143107 | MS.gene08571:intron | 25.0% |
| ! | AATCCAAAAACTCATTGATA+AGG | - | chr4.1:38143183-38143202 | None:intergenic | 25.0% |
| ! | ATGATGAAAAGGATTATCAT+AGG | - | chr4.1:38144259-38144278 | None:intergenic | 25.0% |
| ! | ATGCCAATAATATGATGAAA+AGG | - | chr4.1:38144270-38144289 | None:intergenic | 25.0% |
| ! | TACAATTGATTGTAGTTGTT+TGG | + | chr4.1:38143513-38143532 | MS.gene08571:intron | 25.0% |
| ! | TGATGTTGTTGAAATGATTA+GGG | + | chr4.1:38144114-38144133 | MS.gene08571:intron | 25.0% |
| ! | TTCATGTGGTATATAATGAT+AGG | + | chr4.1:38142965-38142984 | MS.gene08571:intron | 25.0% |
| ! | TTGATGTTGTTGAAATGATT+AGG | + | chr4.1:38144113-38144132 | MS.gene08571:intron | 25.0% |
| ! | TTTCTCATTGTTGATGTATA+TGG | + | chr4.1:38142830-38142849 | MS.gene08571:intron | 25.0% |
| !! | TTTGGTTATAACTTTTCATG+TGG | + | chr4.1:38142951-38142970 | MS.gene08571:intron | 25.0% |
| !! | TTTTATATTTGGAGGCTAAT+TGG | + | chr4.1:38143380-38143399 | MS.gene08571:intron | 25.0% |
| !!! | ATATTTTTTTGGGATGAATC+GGG | + | chr4.1:38142285-38142304 | MS.gene08571:intron | 25.0% |
| !!! | TGCATTTGATATTTTGATAC+TGG | + | chr4.1:38143701-38143720 | MS.gene08571:intron | 25.0% |
| AAATACAACAAATCACTACC+TGG | - | chr4.1:38142655-38142674 | None:intergenic | 30.0% | |
| AAATCAGCATAGCTAATGAT+TGG | - | chr4.1:38142629-38142648 | None:intergenic | 30.0% | |
| AACACAAAAAAAATAGGGCA+TGG | - | chr4.1:38144072-38144091 | None:intergenic | 30.0% | |
| AATCAGCATAGCTAATGATT+GGG | - | chr4.1:38142628-38142647 | None:intergenic | 30.0% | |
| AATTAACCACATGTGATAAC+TGG | + | chr4.1:38143300-38143319 | MS.gene08571:intron | 30.0% | |
| ACACAAAAAAAATAGGGCAT+GGG | - | chr4.1:38144071-38144090 | None:intergenic | 30.0% | |
| TATGAGTTGTCAAAAATGAG+AGG | - | chr4.1:38144013-38144032 | None:intergenic | 30.0% | |
| TGGATTTCATACATTTCTGT+TGG | + | chr4.1:38143197-38143216 | MS.gene08571:intron | 30.0% | |
| TTTGATTCAAAGACAAAGAC+TGG | + | chr4.1:38142500-38142519 | MS.gene08571:CDS | 30.0% | |
| ! | AGTCCTTATCAATGAGTTTT+TGG | + | chr4.1:38143177-38143196 | MS.gene08571:intron | 30.0% |
| ! | CTTTGATTCTTGATTTTTGC+AGG | + | chr4.1:38143542-38143561 | MS.gene08571:intron | 30.0% |
| !! | ATTTCGGTCATTGATTTATG+TGG | + | chr4.1:38142702-38142721 | MS.gene08571:intron | 30.0% |
| !! | TGATGATTTGTTTGTGTAGA+TGG | + | chr4.1:38142462-38142481 | MS.gene08571:intron | 30.0% |
| AGTCAATACATACAATGGTG+TGG | - | chr4.1:38143643-38143662 | None:intergenic | 35.0% | |
| ATCAAAAGCTATCTGAGCTT+GGG | + | chr4.1:38144389-38144408 | MS.gene08571:CDS | 35.0% | |
| ATTGCAAATGCGTTTCAAAC+AGG | - | chr4.1:38143083-38143102 | None:intergenic | 35.0% | |
| CAGCATATTTCTCAACAAGT+GGG | - | chr4.1:38144216-38144235 | None:intergenic | 35.0% | |
| CTACAGACAACTTTCAAAAC+AGG | - | chr4.1:38143159-38143178 | None:intergenic | 35.0% | |
| GAAATGATTAGGGAGTTGTT+GGG | + | chr4.1:38144124-38144143 | MS.gene08571:intron | 35.0% | |
| TCTCATTTGTCAATGATTGC+AGG | + | chr4.1:38144330-38144349 | MS.gene08571:intron | 35.0% | |
| TGAAATGATTAGGGAGTTGT+TGG | + | chr4.1:38144123-38144142 | MS.gene08571:intron | 35.0% | |
| TTGCAATGCTATCTACAAGT+TGG | - | chr4.1:38143226-38143245 | None:intergenic | 35.0% | |
| TTTAAACTATGGCTGCATTG+TGG | + | chr4.1:38143739-38143758 | MS.gene08571:intron | 35.0% | |
| ! | GATTTATGTGGTTCGTTTTG+TGG | + | chr4.1:38142714-38142733 | MS.gene08571:intron | 35.0% |
| !! | GCTAATTGGTCCTTTTGTTT+TGG | + | chr4.1:38143394-38143413 | MS.gene08571:intron | 35.0% |
| AAATCCAGAACACTAACCCT+TGG | - | chr4.1:38143475-38143494 | None:intergenic | 40.0% | |
| ATGAGAGGATTAGAAGTCCA+TGG | - | chr4.1:38143998-38144017 | None:intergenic | 40.0% | |
| ATGTGTTTGGCAAAGCTATG+GGG | + | chr4.1:38143582-38143601 | MS.gene08571:CDS | 40.0% | |
| ATTGGGAATTGCTCCTTAAG+AGG | - | chr4.1:38142611-38142630 | None:intergenic | 40.0% | |
| CATATTTCTCAACAAGTGGG+CGG | - | chr4.1:38144213-38144232 | None:intergenic | 40.0% | |
| CATCAAAAGCTATCTGAGCT+TGG | + | chr4.1:38144388-38144407 | MS.gene08571:CDS | 40.0% | |
| GATGTGTTTGGCAAAGCTAT+GGG | + | chr4.1:38143581-38143600 | MS.gene08571:CDS | 40.0% | |
| GATTCAAAGACAAAGACTGG+TGG | + | chr4.1:38142503-38142522 | MS.gene08571:CDS | 40.0% | |
| GCAGCATATTTCTCAACAAG+TGG | - | chr4.1:38144217-38144236 | None:intergenic | 40.0% | |
| GCATTTCCAGTTATCACATG+AGG | - | chr4.1:38143261-38143280 | None:intergenic | 40.0% | |
| GCATTTCCAGTTATCACATG+TGG | - | chr4.1:38143261-38143280 | None:intergenic | 40.0% | |
| TAAGTTCCGCATTATCCACT+GGG | + | chr4.1:38144466-38144485 | MS.gene08571:intron | 40.0% | |
| TATCACTTGGCAACTGAAGA+AGG | - | chr4.1:38144165-38144184 | None:intergenic | 40.0% | |
| TCTTCAGTTGCCAAGTGATA+AGG | + | chr4.1:38144165-38144184 | MS.gene08571:CDS | 40.0% | |
| TGAGAGGATTAGAAGTCCAT+GGG | - | chr4.1:38143997-38144016 | None:intergenic | 40.0% | |
| TGTCTTGCAGTTCATGTTCT+TGG | + | chr4.1:38143119-38143138 | MS.gene08571:intron | 40.0% | |
| TTAAGTTCCGCATTATCCAC+TGG | + | chr4.1:38144465-38144484 | MS.gene08571:intron | 40.0% | |
| TTACCAAAAGGCTGTTGAGA+AGG | + | chr4.1:38141985-38142004 | MS.gene08571:CDS | 40.0% | |
| ! | AGATAGCTTTTGATGAGCCT+CGG | - | chr4.1:38144383-38144402 | None:intergenic | 40.0% |
| ! | CGTTGAGATTGTGACTGTTT+TGG | + | chr4.1:38143914-38143933 | MS.gene08571:intron | 40.0% |
| ! | GTTGTTGCTGTTGAGATTAC+TGG | + | chr4.1:38142754-38142773 | MS.gene08571:CDS | 40.0% |
| ! | TCGTTTTGTGGTTATGCAGT+TGG | + | chr4.1:38142726-38142745 | MS.gene08571:intron | 40.0% |
| ! | TGATATCGCTGTTAGGCTTT+TGG | + | chr4.1:38142583-38142602 | MS.gene08571:CDS | 40.0% |
| ! | TTTCTTTGCTGATTATGCCG+AGG | + | chr4.1:38144363-38144382 | MS.gene08571:CDS | 40.0% |
| !! | CTCAAAAGTGCCTTATCACT+TGG | - | chr4.1:38144178-38144197 | None:intergenic | 40.0% |
| !! | CTTTTGGTAATCAGCACTCA+CGG | - | chr4.1:38141975-38141994 | None:intergenic | 40.0% |
| !! | GGAGGTACGTTTACTACTTT+TGG | + | chr4.1:38142807-38142826 | MS.gene08571:intron | 40.0% |
| !! | TAGCTATGCTGATTTCTACC+AGG | + | chr4.1:38142634-38142653 | MS.gene08571:CDS | 40.0% |
| ACAAAGACTGGTGGTCCTTT+CGG | + | chr4.1:38142512-38142531 | MS.gene08571:CDS | 45.0% | |
| ACCTGTCCTCATGTGATAAC+TGG | + | chr4.1:38143252-38143271 | MS.gene08571:intron | 45.0% | |
| ACGGTCTTGATATCGCTGTT+AGG | + | chr4.1:38142576-38142595 | MS.gene08571:CDS | 45.0% | |
| AGCGATATCAAGACCGTTGT+TGG | - | chr4.1:38142573-38142592 | None:intergenic | 45.0% | |
| ATGATTAGGGAGTTGTTGGG+TGG | + | chr4.1:38144127-38144146 | MS.gene08571:intron | 45.0% | |
| CAACATGAATCAACTCCCAG+TGG | - | chr4.1:38144484-38144503 | None:intergenic | 45.0% | |
| GACCATTTGAGGGATGTGTT+TGG | + | chr4.1:38143569-38143588 | MS.gene08571:CDS | 45.0% | |
| GGATGTGTTTGGCAAAGCTA+TGG | + | chr4.1:38143580-38143599 | MS.gene08571:CDS | 45.0% | |
| TAGGCTTCTGCAAATCTGTG+TGG | - | chr4.1:38144516-38144535 | None:intergenic | 45.0% | |
| TAGTAAACGTACCTCCCTAC+CGG | - | chr4.1:38142803-38142822 | None:intergenic | 45.0% | |
| TCAACTCCCAGTGGATAATG+CGG | - | chr4.1:38144475-38144494 | None:intergenic | 45.0% | |
| TCCAGTTATCACATGAGGAC+AGG | - | chr4.1:38143256-38143275 | None:intergenic | 45.0% | |
| TGCCAAACACATCCCTCAAA+TGG | - | chr4.1:38143574-38143593 | None:intergenic | 45.0% | |
| TTTGTGGTTATGCAGTTGGC+TGG | + | chr4.1:38142730-38142749 | MS.gene08571:intron | 45.0% | |
| ! | GTTGCTGTTGAGATTACTGG+TGG | + | chr4.1:38142757-38142776 | MS.gene08571:CDS | 45.0% |
| ! | TGCAGGTTCTGACCATTTGA+GGG | + | chr4.1:38143559-38143578 | MS.gene08571:intron | 45.0% |
| ! | TTGCAGGTTCTGACCATTTG+AGG | + | chr4.1:38143558-38143577 | MS.gene08571:intron | 45.0% |
| !! | AAGGAGCGTTCTGGATTTGA+GGG | + | chr4.1:38143971-38143990 | MS.gene08571:CDS | 45.0% |
| !! | CGTGAGTGCTGATTACCAAA+AGG | + | chr4.1:38141973-38141992 | MS.gene08571:CDS | 45.0% |
| !!! | TAGGCTTTTGGAGCCTCTTA+AGG | + | chr4.1:38142595-38142614 | MS.gene08571:CDS | 45.0% |
| AGTAAACGTACCTCCCTACC+GGG | - | chr4.1:38142802-38142821 | None:intergenic | 50.0% | |
| CAACAAGTGGGCGGAATACA+GGG | - | chr4.1:38144204-38144223 | None:intergenic | 50.0% | |
| CAGACAAAGCAACGATGTCC+TGG | - | chr4.1:38143616-38143635 | None:intergenic | 50.0% | |
| GGTAATCAGCACTCACGGTT+GGG | - | chr4.1:38141970-38141989 | None:intergenic | 50.0% | |
| TACGCCAAACGGAGCATAAG+AGG | - | chr4.1:38142055-38142074 | None:intergenic | 50.0% | |
| TCAACAAGTGGGCGGAATAC+AGG | - | chr4.1:38144205-38144224 | None:intergenic | 50.0% | |
| TCCAGAACACTAACCCTTGG+TGG | - | chr4.1:38143472-38143491 | None:intergenic | 50.0% | |
| TGGTAATCAGCACTCACGGT+TGG | - | chr4.1:38141971-38141990 | None:intergenic | 50.0% | |
| TTGTGTAGATGGCACTCTGC+TGG | + | chr4.1:38142473-38142492 | MS.gene08571:intron | 50.0% | |
| TTGTTGGGTGGTGAGAAGGA+AGG | + | chr4.1:38144139-38144158 | MS.gene08571:CDS | 50.0% | |
| ! | CAGGACATCGTTGCTTTGTC+TGG | + | chr4.1:38143614-38143633 | MS.gene08571:CDS | 50.0% |
| ! | CTTGCTCATGGTGCCAACAA+CGG | + | chr4.1:38142557-38142576 | MS.gene08571:CDS | 50.0% |
| ! | GACATCGTTGCTTTGTCTGG+TGG | + | chr4.1:38143617-38143636 | MS.gene08571:CDS | 50.0% |
| ! | TCGCCTTCTCAACAGCCTTT+TGG | - | chr4.1:38141991-38142010 | None:intergenic | 50.0% |
| ! | TGGTGCTTGATGGTTCCGAA+AGG | - | chr4.1:38142530-38142549 | None:intergenic | 50.0% |
| !! | AAGCTCAGCTTGGTGCTTGA+TGG | - | chr4.1:38142540-38142559 | None:intergenic | 50.0% |
| !! | CAAGGAGCGTTCTGGATTTG+AGG | + | chr4.1:38143970-38143989 | MS.gene08571:CDS | 50.0% |
| AAGGCGAAGAGGAAGCTCAG+AGG | + | chr4.1:38142004-38142023 | MS.gene08571:CDS | 55.0% | |
| AAGTTCCTTTCCACCCCGGT+AGG | + | chr4.1:38142785-38142804 | MS.gene08571:CDS | 55.0% | |
| AGCTATGGGGCTTAGTGACC+AGG | + | chr4.1:38143595-38143614 | MS.gene08571:CDS | 55.0% | |
| AGGCTGTTGAGAAGGCGAAG+AGG | + | chr4.1:38141993-38142012 | MS.gene08571:CDS | 55.0% | |
| AGTTCCTTTCCACCCCGGTA+GGG | + | chr4.1:38142786-38142805 | MS.gene08571:CDS | 55.0% | |
| CACCATGAGCAAGCTCAGCT+TGG | - | chr4.1:38142550-38142569 | None:intergenic | 55.0% | |
| CCTGAAGTTCCTTTCCACCC+CGG | + | chr4.1:38142781-38142800 | MS.gene08571:CDS | 55.0% | |
| CGCTCCTCTTATGCTCCGTT+TGG | + | chr4.1:38142048-38142067 | MS.gene08571:CDS | 55.0% | |
| GGAGTTGTTGGGTGGTGAGA+AGG | + | chr4.1:38144135-38144154 | MS.gene08571:CDS | 55.0% | |
| GTAAACGTACCTCCCTACCG+GGG | - | chr4.1:38142801-38142820 | None:intergenic | 55.0% | |
| TTGGTAGGGAGCTGCACACA+AGG | + | chr4.1:38143952-38143971 | MS.gene08571:intron | 55.0% | |
| ! | CACCAAGCTGAGCTTGCTCA+TGG | + | chr4.1:38142545-38142564 | MS.gene08571:CDS | 55.0% |
| ! | CACTAACCCTTGGTGGCATC+AGG | - | chr4.1:38143465-38143484 | None:intergenic | 55.0% |
| ! | GCCACCAAGGGTTAGTGTTC+TGG | + | chr4.1:38143468-38143487 | MS.gene08571:intron | 55.0% |
| ! | GTTCTGGATTTGAGGGCCCA+TGG | + | chr4.1:38143978-38143997 | MS.gene08571:CDS | 55.0% |
| AAGCCTGAGCCACCACCAGA+GGG | + | chr4.1:38143432-38143451 | MS.gene08571:CDS | 60.0% | |
| CCGGGGTGGAAAGGAACTTC+AGG | - | chr4.1:38142784-38142803 | None:intergenic | 60.0% | |
| CGCTTGCCTGATGCCACCAA+GGG | + | chr4.1:38143456-38143475 | MS.gene08571:CDS | 60.0% | |
| TCGCTTGCCTGATGCCACCA+AGG | + | chr4.1:38143455-38143474 | MS.gene08571:CDS | 60.0% | |
| !! | GCTGCACACAAGGAGCGTTC+TGG | + | chr4.1:38143962-38143981 | MS.gene08571:CDS | 60.0% |
| AACGTACCTCCCTACCGGGG+TGG | - | chr4.1:38142798-38142817 | None:intergenic | 65.0% | |
| ACCTCCCTACCGGGGTGGAA+AGG | - | chr4.1:38142793-38142812 | None:intergenic | 65.0% | |
| CAAGCCTGAGCCACCACCAG+AGG | + | chr4.1:38143431-38143450 | MS.gene08571:CDS | 65.0% | |
| GCATCAGGCAAGCGACCCTC+TGG | - | chr4.1:38143450-38143469 | None:intergenic | 65.0% | |
| TCAGGCAAGCGACCCTCTGG+TGG | - | chr4.1:38143447-38143466 | None:intergenic | 65.0% | |
| TCCTTTCCACCCCGGTAGGG+AGG | + | chr4.1:38142789-38142808 | MS.gene08571:CDS | 65.0% | |
| GGCAAGCGACCCTCTGGTGG+TGG | - | chr4.1:38143444-38143463 | None:intergenic | 70.0% | |
| !! | CGACCCTCTGGTGGTGGCTC+AGG | - | chr4.1:38143438-38143457 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 38141953 | 38144536 | 38141953 | ID=MS.gene08571 |
| chr4.1 | mRNA | 38141953 | 38144536 | 38141953 | ID=MS.gene08571.t1;Parent=MS.gene08571 |
| chr4.1 | exon | 38141953 | 38142071 | 38141953 | ID=MS.gene08571.t1.exon1;Parent=MS.gene08571.t1 |
| chr4.1 | CDS | 38141953 | 38142071 | 38141953 | ID=cds.MS.gene08571.t1;Parent=MS.gene08571.t1 |
| chr4.1 | exon | 38142481 | 38142655 | 38142481 | ID=MS.gene08571.t1.exon2;Parent=MS.gene08571.t1 |
| chr4.1 | CDS | 38142481 | 38142655 | 38142481 | ID=cds.MS.gene08571.t1;Parent=MS.gene08571.t1 |
| chr4.1 | exon | 38142745 | 38142810 | 38142745 | ID=MS.gene08571.t1.exon3;Parent=MS.gene08571.t1 |
| chr4.1 | CDS | 38142745 | 38142810 | 38142745 | ID=cds.MS.gene08571.t1;Parent=MS.gene08571.t1 |
| chr4.1 | exon | 38143429 | 38143477 | 38143429 | ID=MS.gene08571.t1.exon4;Parent=MS.gene08571.t1 |
| chr4.1 | CDS | 38143429 | 38143477 | 38143429 | ID=cds.MS.gene08571.t1;Parent=MS.gene08571.t1 |
| chr4.1 | exon | 38143564 | 38143649 | 38143564 | ID=MS.gene08571.t1.exon5;Parent=MS.gene08571.t1 |
| chr4.1 | CDS | 38143564 | 38143649 | 38143564 | ID=cds.MS.gene08571.t1;Parent=MS.gene08571.t1 |
| chr4.1 | exon | 38143959 | 38144038 | 38143959 | ID=MS.gene08571.t1.exon6;Parent=MS.gene08571.t1 |
| chr4.1 | CDS | 38143959 | 38144038 | 38143959 | ID=cds.MS.gene08571.t1;Parent=MS.gene08571.t1 |
| chr4.1 | exon | 38144135 | 38144237 | 38144135 | ID=MS.gene08571.t1.exon7;Parent=MS.gene08571.t1 |
| chr4.1 | CDS | 38144135 | 38144237 | 38144135 | ID=cds.MS.gene08571.t1;Parent=MS.gene08571.t1 |
| chr4.1 | exon | 38144352 | 38144410 | 38144352 | ID=MS.gene08571.t1.exon8;Parent=MS.gene08571.t1 |
| chr4.1 | CDS | 38144352 | 38144410 | 38144352 | ID=cds.MS.gene08571.t1;Parent=MS.gene08571.t1 |
| chr4.1 | exon | 38144521 | 38144536 | 38144521 | ID=MS.gene08571.t1.exon9;Parent=MS.gene08571.t1 |
| chr4.1 | CDS | 38144521 | 38144536 | 38144521 | ID=cds.MS.gene08571.t1;Parent=MS.gene08571.t1 |
| Gene Sequence |
| Protein sequence |
