Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08580.t1 | XP_013456039.1 | 98.5 | 341 | 5 | 0 | 1 | 341 | 1 | 341 | 2.10E-195 | 691.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08580.t1 | Q9LZG0 | 83.1 | 337 | 57 | 0 | 4 | 340 | 8 | 344 | 8.3e-169 | 594.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08580.t1 | A0A072UW36 | 98.5 | 341 | 5 | 0 | 1 | 341 | 1 | 341 | 1.5e-195 | 691.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08580 | MS.gene003877 | PPI |
| MS.gene08580 | MS.gene052011 | PPI |
| MS.gene08580 | MS.gene98726 | PPI |
| MS.gene056386 | MS.gene08580 | PPI |
| MS.gene28335 | MS.gene08580 | PPI |
| MS.gene46881 | MS.gene08580 | PPI |
| MS.gene85276 | MS.gene08580 | PPI |
| MS.gene032177 | MS.gene08580 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08580.t1 | MTR_4g461070 | 98.534 | 341 | 5 | 0 | 1 | 341 | 1 | 341 | 0.0 | 702 |
| MS.gene08580.t1 | MTR_1g064060 | 95.894 | 341 | 14 | 0 | 1 | 341 | 1 | 341 | 0.0 | 686 |
| MS.gene08580.t1 | MTR_1g064060 | 94.649 | 299 | 16 | 0 | 1 | 299 | 1 | 299 | 0.0 | 593 |
| MS.gene08580.t1 | MTR_3g112040 | 26.586 | 331 | 203 | 16 | 12 | 326 | 27 | 333 | 4.94e-13 | 69.7 |
| MS.gene08580.t1 | MTR_3g081400 | 63.636 | 44 | 13 | 1 | 263 | 306 | 34 | 74 | 1.96e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08580.t1 | AT5G03300 | 83.086 | 337 | 57 | 0 | 4 | 340 | 8 | 344 | 0.0 | 605 |
| MS.gene08580.t1 | AT3G09820 | 83.432 | 338 | 56 | 0 | 3 | 340 | 6 | 343 | 0.0 | 601 |
| MS.gene08580.t1 | AT3G09820 | 84.694 | 294 | 45 | 0 | 47 | 340 | 8 | 301 | 0.0 | 530 |
| MS.gene08580.t1 | AT5G03300 | 83.505 | 291 | 48 | 0 | 50 | 340 | 1 | 291 | 0.0 | 525 |
| MS.gene08580.t1 | AT5G03300 | 83.505 | 291 | 48 | 0 | 50 | 340 | 1 | 291 | 0.0 | 525 |
| MS.gene08580.t1 | AT1G19600 | 25.904 | 332 | 217 | 14 | 14 | 336 | 23 | 334 | 2.37e-14 | 73.6 |
| MS.gene08580.t1 | AT4G27600 | 23.270 | 318 | 205 | 11 | 7 | 308 | 123 | 417 | 8.59e-11 | 63.2 |
Find 90 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGTATATGGACTATGTATT+TGG | 0.205120 | 4.1:-38289335 | MS.gene08580:CDS |
| ACCAGCTTGTTTAGAGTTCT+TGG | 0.208302 | 4.1:+38290134 | None:intergenic |
| ATTTGAAGAAACCCGAAAAT+TGG | 0.225304 | 4.1:-38289785 | MS.gene08580:CDS |
| TTCCTGATGCCTTTGGCAAC+TGG | 0.236821 | 4.1:+38289141 | None:intergenic |
| CATTCTGGGATTCAGGTATA+TGG | 0.238438 | 4.1:-38289348 | MS.gene08580:intron |
| GTATCAACTAATTTCTCTTT+AGG | 0.253965 | 4.1:+38289026 | None:intergenic |
| TCTTTAGGTAATAGAATTAC+AGG | 0.256176 | 4.1:+38289041 | None:intergenic |
| CTTGAAGAACTCACATATAA+AGG | 0.274936 | 4.1:+38289461 | None:intergenic |
| AATGTACTCCACGTTATATT+TGG | 0.281042 | 4.1:+38290462 | None:intergenic |
| GCCAGATATTTCTATATTGC+TGG | 0.281839 | 4.1:-38289653 | MS.gene08580:CDS |
| TATTGAAAATCAGGCTTCTC+TGG | 0.291194 | 4.1:+38288782 | None:intergenic |
| GCTTTGGAAGGTGTTCTTCT+TGG | 0.324177 | 4.1:-38291775 | MS.gene08580:CDS |
| AGAATCACTTATTGAAAATC+AGG | 0.327042 | 4.1:+38288773 | None:intergenic |
| AGCAACTAATTGAATGGATT+CGG | 0.333100 | 4.1:+38289610 | None:intergenic |
| GGAAGGTGTTCTTCTTGGTA+TGG | 0.348012 | 4.1:-38291770 | MS.gene08580:CDS |
| GCAACTAATTGAATGGATTC+GGG | 0.354886 | 4.1:+38289611 | None:intergenic |
| TAGTGGTTGCTTCAAGTTCC+CGG | 0.356075 | 4.1:-38290210 | MS.gene08580:CDS |
| TGGAGGATTTCTTTCACAAT+TGG | 0.357365 | 4.1:-38288888 | MS.gene08580:CDS |
| GCTCTCACACATTCTTCAAT+AGG | 0.364927 | 4.1:+38288854 | None:intergenic |
| TCCTGATGCCTTTGGCAACT+GGG | 0.376131 | 4.1:+38289142 | None:intergenic |
| CGAGAATAGCATTGTTCAAC+TGG | 0.377377 | 4.1:+38291536 | None:intergenic |
| TCTCGCATCAACAATGGCTT+TGG | 0.379448 | 4.1:-38291791 | None:intergenic |
| TCCAGCAATATAGAAATATC+TGG | 0.381323 | 4.1:+38289652 | None:intergenic |
| TTGTGTGTTCCTGATGCCTT+TGG | 0.383545 | 4.1:+38289134 | None:intergenic |
| TGCATTGGGAAGGACAAGTT+TGG | 0.384984 | 4.1:-38290168 | MS.gene08580:CDS |
| AAACCCGAAAATTGGGCATT+AGG | 0.397247 | 4.1:-38289777 | MS.gene08580:intron |
| CTTTATATGTGAGTTCTTCA+AGG | 0.401114 | 4.1:-38289460 | MS.gene08580:CDS |
| TTTGAAGAAACCCGAAAATT+GGG | 0.414245 | 4.1:-38289784 | MS.gene08580:CDS |
| AGCTATCTCCTCGACATTAT+CGG | 0.414959 | 4.1:+38289175 | None:intergenic |
| ACTTGTGCTGTTTGTGTCGT+TGG | 0.426149 | 4.1:-38289977 | MS.gene08580:CDS |
| ACCGATGTAACTAGTGGCTC+CGG | 0.432188 | 4.1:+38290191 | None:intergenic |
| CTAGTTACATCGGTTGCATT+GGG | 0.448977 | 4.1:-38290182 | MS.gene08580:CDS |
| TTTGTAGGAGATGCCTTTGT+TGG | 0.450937 | 4.1:-38288908 | MS.gene08580:intron |
| ACTAGTTACATCGGTTGCAT+TGG | 0.454698 | 4.1:-38290183 | MS.gene08580:CDS |
| TTGAAGAACTCACATATAAA+GGG | 0.455056 | 4.1:+38289462 | None:intergenic |
| GTAGGAGATGCCTTTGTTGG+AGG | 0.455368 | 4.1:-38288905 | MS.gene08580:intron |
| TCCCAGTTGCCAAAGGCATC+AGG | 0.461050 | 4.1:-38289143 | MS.gene08580:CDS |
| ATTCTTCAATAGGTTTCTCC+TGG | 0.464884 | 4.1:+38288864 | None:intergenic |
| GAATTCAATCAGGGTTGCTC+AGG | 0.465156 | 4.1:-38290328 | MS.gene08580:intron |
| GTGCTACTCAGAATTCAATC+AGG | 0.465309 | 4.1:-38290338 | MS.gene08580:CDS |
| GAAGGTGTTCTTCTTGGTAT+GGG | 0.471521 | 4.1:-38291769 | MS.gene08580:CDS |
| TAGGGCATTACCTGCTCCAT+TGG | 0.477788 | 4.1:+38289004 | None:intergenic |
| ATGTTCAGCAACTAATTGAA+TGG | 0.478120 | 4.1:+38289604 | None:intergenic |
| GCAATTTGCAGCTGATAAGT+TGG | 0.489440 | 4.1:+38289821 | None:intergenic |
| CTTCTCTGGGTAAGTGCAGC+CGG | 0.491076 | 4.1:+38288796 | None:intergenic |
| ATTGAAAATCAGGCTTCTCT+GGG | 0.503018 | 4.1:+38288783 | None:intergenic |
| CCCGTGTGTGTTGCTCAAGA+TGG | 0.504240 | 4.1:-38289080 | MS.gene08580:CDS |
| ATTTCTTTCACAATTGGTCC+AGG | 0.505204 | 4.1:-38288882 | MS.gene08580:CDS |
| AATGTTATCATTCAAAGGTC+CGG | 0.511083 | 4.1:-38288815 | MS.gene08580:CDS |
| TATAACGTGGAGTACATTGC+TGG | 0.514705 | 4.1:-38290457 | MS.gene08580:CDS |
| ATCAGCACCCTGTGTGATAA+CGG | 0.517329 | 4.1:+38289103 | None:intergenic |
| TACGGAAGAGCTTTCTCCTG+TGG | 0.523507 | 4.1:+38289435 | None:intergenic |
| GAGAAATTAGTTGATACCAA+TGG | 0.529177 | 4.1:-38289020 | MS.gene08580:CDS |
| AGGCATCAGGAACACACAAA+AGG | 0.529385 | 4.1:-38289130 | MS.gene08580:CDS |
| TTAGTTGATACCAATGGAGC+AGG | 0.536544 | 4.1:-38289014 | MS.gene08580:intron |
| TTTGTGTCGTTGGTGGTGAA+AGG | 0.544058 | 4.1:-38289967 | MS.gene08580:intron |
| TGTGCTGTTTGTGTCGTTGG+TGG | 0.549931 | 4.1:-38289974 | MS.gene08580:CDS |
| CAGCAAATGTTATCATTCAA+AGG | 0.551386 | 4.1:-38288820 | MS.gene08580:CDS |
| ATTGAAGAATGTGTGAGAGC+TGG | 0.554569 | 4.1:-38288851 | MS.gene08580:CDS |
| CCGTGTGTGTTGCTCAAGAT+GGG | 0.565237 | 4.1:-38289079 | MS.gene08580:CDS |
| CCCATCTTGAGCAACACACA+CGG | 0.565436 | 4.1:+38289079 | None:intergenic |
| GACAGCAGAAATGTCGAGAA+GGG | 0.565725 | 4.1:+38291741 | None:intergenic |
| CGACAGCAGAAATGTCGAGA+AGG | 0.566798 | 4.1:+38291740 | None:intergenic |
| TGAGTTCTTCAAGGATCCAC+AGG | 0.569756 | 4.1:-38289451 | MS.gene08580:CDS |
| TTGAAGAATGTGTGAGAGCT+GGG | 0.569874 | 4.1:-38288850 | MS.gene08580:CDS |
| CACATATAAAGGGTGCAGAA+AGG | 0.573702 | 4.1:+38289472 | None:intergenic |
| GAAGACGAGAATACACCTAC+AGG | 0.574426 | 4.1:-38290001 | MS.gene08580:CDS |
| ACCAAGAACTCTAAACAAGC+TGG | 0.574572 | 4.1:-38290135 | MS.gene08580:CDS |
| TGAAAGAAATCCTCCAACAA+AGG | 0.578951 | 4.1:+38288895 | None:intergenic |
| CCGATGTAACTAGTGGCTCC+GGG | 0.591002 | 4.1:+38290192 | None:intergenic |
| CCCGGAGCCACTAGTTACAT+CGG | 0.598586 | 4.1:-38290192 | MS.gene08580:CDS |
| TTACATCGGTTGCATTGGGA+AGG | 0.601422 | 4.1:-38290178 | MS.gene08580:CDS |
| CTTTAGGTAATAGAATTACA+GGG | 0.605211 | 4.1:+38289042 | None:intergenic |
| GCATCAACAATGGCTTTGGA+AGG | 0.614210 | 4.1:-38291787 | None:intergenic |
| CAAGATATCCCAGTTGCCAA+AGG | 0.619346 | 4.1:-38289150 | MS.gene08580:CDS |
| AAGGATTACCGTTATCACAC+AGG | 0.620728 | 4.1:-38289111 | MS.gene08580:CDS |
| AACTAATTGAATGGATTCGG+GGG | 0.625445 | 4.1:+38289613 | None:intergenic |
| CCATCTTGAGCAACACACAC+GGG | 0.628074 | 4.1:+38289080 | None:intergenic |
| TGCTACTCAGAATTCAATCA+GGG | 0.630239 | 4.1:-38290337 | MS.gene08580:CDS |
| TGGGAAGGACAAGTTTGGCG+AGG | 0.639413 | 4.1:-38290163 | MS.gene08580:CDS |
| TTCGAAAGTTCGTGGCTGGG+AGG | 0.641794 | 4.1:-38289288 | MS.gene08580:intron |
| CAACTAATTGAATGGATTCG+GGG | 0.644425 | 4.1:+38289612 | None:intergenic |
| ACATGCAGCTGCAAATAACA+AGG | 0.645685 | 4.1:-38289585 | MS.gene08580:intron |
| ACAGCAGAAATGTCGAGAAG+GGG | 0.652637 | 4.1:+38291742 | None:intergenic |
| CAAACAGCACAAGTTCCTGT+AGG | 0.659898 | 4.1:+38289986 | None:intergenic |
| TGACCAGACCGATAATGTCG+AGG | 0.675199 | 4.1:-38289183 | MS.gene08580:intron |
| AATGCAACCGATGTAACTAG+TGG | 0.675466 | 4.1:+38290185 | None:intergenic |
| AGGATTACCGTTATCACACA+GGG | 0.685783 | 4.1:-38289110 | MS.gene08580:CDS |
| AACGTGGAGTACATTGCTGG+AGG | 0.692110 | 4.1:-38290454 | MS.gene08580:intron |
| AATGACTGCCAAATATAACG+TGG | 0.704099 | 4.1:-38290470 | MS.gene08580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTTATTTGAATTTGA+CGG | + | chr4.1:38291161-38291180 | None:intergenic | 10.0% |
| !!! | TTGAATTCTAAAAAAAATAT+CGG | + | chr4.1:38289897-38289916 | None:intergenic | 10.0% |
| !!! | TTTTAAATATATAGTTGAAA+AGG | - | chr4.1:38290884-38290903 | MS.gene08580:intron | 10.0% |
| !!! | TTTTTTCTTATTGATTTTTA+AGG | - | chr4.1:38291183-38291202 | MS.gene08580:intron | 10.0% |
| !! | AACTTATTTATTTAACAACT+AGG | - | chr4.1:38290524-38290543 | MS.gene08580:intron | 15.0% |
| !! | GTAAAAAAAATGAATGATTT+GGG | + | chr4.1:38290651-38290670 | None:intergenic | 15.0% |
| !!! | ATTTTGATGTAATTATTTCT+TGG | - | chr4.1:38289544-38289563 | MS.gene08580:intron | 15.0% |
| !!! | CACTTTTCATTTTTAAATTA+CGG | - | chr4.1:38289629-38289648 | MS.gene08580:CDS | 15.0% |
| !!! | TAATTTTTTTTCTTTTTTGC+AGG | - | chr4.1:38290199-38290218 | MS.gene08580:CDS | 15.0% |
| !!! | TACTTTTCCTTTTTAAATTA+CGG | + | chr4.1:38289758-38289777 | None:intergenic | 15.0% |
| !! | AAATAAGTTAATTTCAGAAG+TGG | + | chr4.1:38290513-38290532 | None:intergenic | 20.0% |
| !! | ATATAGTCCGTAATTTAAAA+AGG | - | chr4.1:38289748-38289767 | MS.gene08580:intron | 20.0% |
| !! | CGTAAAAAAAATGAATGATT+TGG | + | chr4.1:38290652-38290671 | None:intergenic | 20.0% |
| !! | TTATTCAATGAACCTAAAAA+AGG | + | chr4.1:38289358-38289377 | None:intergenic | 20.0% |
| !!! | ATTCATTTTTTTTACGTCTT+TGG | - | chr4.1:38290656-38290675 | MS.gene08580:intron | 20.0% |
| !!! | TAAGAAAAGATTCCTTTTTT+AGG | - | chr4.1:38289343-38289362 | MS.gene08580:intron | 20.0% |
| !!! | TAAGAAAAGATTCCTTTTTT+AGG | + | chr4.1:38289362-38289343 | None:intergenic | 20.0% |
| !!! | TGTACAATGTTATGTTATTT+AGG | - | chr4.1:38289143-38289162 | MS.gene08580:CDS | 20.0% |
| !!! | TTCTTTTGTTTTGTTTTTGT+AGG | - | chr4.1:38291636-38291655 | MS.gene08580:intron | 20.0% |
| ! | AAAAAGATCCTGAATTAAGA+AGG | + | chr4.1:38290810-38290829 | None:intergenic | 25.0% |
| ! | AAGAAGAAGAAGAAGAATAA+TGG | - | chr4.1:38288922-38288941 | MS.gene08580:intron | 25.0% |
| ! | AATGTAAAATCAAAACTGCA+AGG | + | chr4.1:38291323-38291342 | None:intergenic | 25.0% |
| ! | ATGTAAAATCAAAACTGCAA+GGG | + | chr4.1:38291322-38291341 | None:intergenic | 25.0% |
| ! | CATAGATACAAAAACACAAA+GGG | + | chr4.1:38289825-38289844 | None:intergenic | 25.0% |
| ! | CTTTAGGTAATAGAATTACA+GGG | + | chr4.1:38291520-38291539 | None:intergenic | 25.0% |
| ! | GTATCAACTAATTTCTCTTT+AGG | + | chr4.1:38291536-38291555 | None:intergenic | 25.0% |
| ! | TCATAGATACAAAAACACAA+AGG | + | chr4.1:38289826-38289845 | None:intergenic | 25.0% |
| ! | TCATCAAAATGACTAACATT+TGG | - | chr4.1:38290850-38290869 | MS.gene08580:intron | 25.0% |
| ! | TCTAAAAAAAATATCGGTGT+CGG | + | chr4.1:38289891-38289910 | None:intergenic | 25.0% |
| ! | TCTTTAGGTAATAGAATTAC+AGG | + | chr4.1:38291521-38291540 | None:intergenic | 25.0% |
| ! | TTGAAGAACTCACATATAAA+GGG | + | chr4.1:38291100-38291119 | None:intergenic | 25.0% |
| ! | TTTGTATTTGCTTCTTATAG+TGG | - | chr4.1:38290332-38290351 | MS.gene08580:CDS | 25.0% |
| !! | TCAGTTTAGCTTATTTACTT+TGG | - | chr4.1:38289489-38289508 | MS.gene08580:CDS | 25.0% |
| !! | TTTTACTTAATAACTCGTCT+TGG | - | chr4.1:38291341-38291360 | MS.gene08580:intron | 25.0% |
| !!! | ATTTTGGTAGTTTTAGAGAT+TGG | - | chr4.1:38289257-38289276 | MS.gene08580:intron | 25.0% |
| !!! | ATTTTTAAGGATTTGCATTC+TGG | - | chr4.1:38291196-38291215 | MS.gene08580:intron | 25.0% |
| !!! | TCTTTTCTTATATTTGAGAC+CGG | - | chr4.1:38289442-38289461 | MS.gene08580:CDS | 25.0% |
| !!! | TCTTTTCTTATATTTGAGAC+CGG | + | chr4.1:38289461-38289442 | None:intergenic | 25.0% |
| !!! | TTTTTAAGGATTTGCATTCT+GGG | - | chr4.1:38291197-38291216 | MS.gene08580:intron | 25.0% |
| AATGTACTCCACGTTATATT+TGG | + | chr4.1:38290100-38290119 | None:intergenic | 30.0% | |
| AATGTTATCATTCAAAGGTC+CGG | - | chr4.1:38291744-38291763 | MS.gene08580:CDS | 30.0% | |
| ACACACCCTAAATAGAAAAA+TGG | + | chr4.1:38289570-38289589 | None:intergenic | 30.0% | |
| ATCAAATACTTCTAGCAGAA+AGG | + | chr4.1:38291026-38291045 | None:intergenic | 30.0% | |
| ATGTAATTACAAGTGTCAGT+CGG | - | chr4.1:38289916-38289935 | MS.gene08580:intron | 30.0% | |
| ATGTTCAGCAACTAATTGAA+TGG | + | chr4.1:38290958-38290977 | None:intergenic | 30.0% | |
| ATTAGGTACCTTCTTAATTC+AGG | - | chr4.1:38290799-38290818 | MS.gene08580:intron | 30.0% | |
| ATTCCACTTCAAAAAGCAAT+AGG | + | chr4.1:38291577-38291596 | None:intergenic | 30.0% | |
| ATTTGAAGAAACCCGAAAAT+TGG | - | chr4.1:38290774-38290793 | MS.gene08580:intron | 30.0% | |
| CAAAAAGGTTTCAAAGAACT+GGG | + | chr4.1:38290696-38290715 | None:intergenic | 30.0% | |
| CAGCAAATGTTATCATTCAA+AGG | - | chr4.1:38291739-38291758 | MS.gene08580:CDS | 30.0% | |
| CTACTCAATGAACCTAAAAA+AGG | - | chr4.1:38289417-38289436 | MS.gene08580:intron | 30.0% | |
| CTTGAAGAACTCACATATAA+AGG | + | chr4.1:38291101-38291120 | None:intergenic | 30.0% | |
| CTTTAGATTATTGCGTTTCT+GGG | - | chr4.1:38290146-38290165 | MS.gene08580:CDS | 30.0% | |
| CTTTATATGTGAGTTCTTCA+AGG | - | chr4.1:38291099-38291118 | MS.gene08580:intron | 30.0% | |
| GTATGCTAAATTCTTTGTGA+TGG | - | chr4.1:38289992-38290011 | MS.gene08580:CDS | 30.0% | |
| TATGATTCCACAATCATTTC+AGG | - | chr4.1:38290058-38290077 | MS.gene08580:intron | 30.0% | |
| TCAAAAAGGTTTCAAAGAAC+TGG | + | chr4.1:38290697-38290716 | None:intergenic | 30.0% | |
| TCCAGCAATATAGAAATATC+TGG | + | chr4.1:38290910-38290929 | None:intergenic | 30.0% | |
| TCTTTAGATTATTGCGTTTC+TGG | - | chr4.1:38290145-38290164 | MS.gene08580:CDS | 30.0% | |
| TTCCACTTCAAAAAGCAATA+GGG | + | chr4.1:38291576-38291595 | None:intergenic | 30.0% | |
| TTTGAAGAAACCCGAAAATT+GGG | - | chr4.1:38290775-38290794 | MS.gene08580:intron | 30.0% | |
| ! | AAAAACACAAAGGGTTTGTT+TGG | + | chr4.1:38289816-38289835 | None:intergenic | 30.0% |
| ! | AATTTCAGAAGTGGATTCTA+CGG | + | chr4.1:38290504-38290523 | None:intergenic | 30.0% |
| ! | AGCAACTAATTGAATGGATT+CGG | + | chr4.1:38290952-38290971 | None:intergenic | 30.0% |
| ! | AGGTATATGGACTATGTATT+TGG | - | chr4.1:38291224-38291243 | MS.gene08580:intron | 30.0% |
| ! | ATTTGGGCATTTAAAACACA+AGG | + | chr4.1:38290635-38290654 | None:intergenic | 30.0% |
| ! | GAGAAATTAGTTGATACCAA+TGG | - | chr4.1:38291539-38291558 | MS.gene08580:CDS | 30.0% |
| !! | AAACCTTTTTGATTGCATGT+AGG | - | chr4.1:38290705-38290724 | MS.gene08580:intron | 30.0% |
| !! | TTTTCTATTTAGGGTGTGTT+TGG | - | chr4.1:38289571-38289590 | MS.gene08580:intron | 30.0% |
| !!! | CGAGTTTAGCTTATTGATTT+TGG | - | chr4.1:38289241-38289260 | MS.gene08580:intron | 30.0% |
| !!! | CTTGGCCATTTTTCTATTTA+GGG | - | chr4.1:38289562-38289581 | MS.gene08580:intron | 30.0% |
| !!! | TCTTGGCCATTTTTCTATTT+AGG | - | chr4.1:38289561-38289580 | MS.gene08580:intron | 30.0% |
| !!! | TTGCTTTTTGAAGTGGAATA+TGG | - | chr4.1:38291578-38291597 | MS.gene08580:intron | 30.0% |
| AATGACTGCCAAATATAACG+TGG | - | chr4.1:38290089-38290108 | MS.gene08580:intron | 35.0% | |
| ATACTTCTAGCAGAAAGGTT+AGG | + | chr4.1:38291021-38291040 | None:intergenic | 35.0% | |
| ATCCTAAAATATACTCCCTC+CGG | + | chr4.1:38289464-38289483 | None:intergenic | 35.0% | |
| ATTCTTCAATAGGTTTCTCC+TGG | + | chr4.1:38291698-38291717 | None:intergenic | 35.0% | |
| ATTGAAAATCAGGCTTCTCT+GGG | + | chr4.1:38291779-38291798 | None:intergenic | 35.0% | |
| ATTTCTTTCACAATTGGTCC+AGG | - | chr4.1:38291677-38291696 | MS.gene08580:intron | 35.0% | |
| CATCATACCTGAAATGATTG+TGG | + | chr4.1:38290068-38290087 | None:intergenic | 35.0% | |
| CATCATGAAAATCTGCACAA+GGG | + | chr4.1:38291065-38291084 | None:intergenic | 35.0% | |
| TATTGAAAATCAGGCTTCTC+TGG | + | chr4.1:38291780-38291799 | None:intergenic | 35.0% | |
| TCATCATGAAAATCTGCACA+AGG | + | chr4.1:38291066-38291085 | None:intergenic | 35.0% | |
| TGAAAGAAATCCTCCAACAA+AGG | + | chr4.1:38291667-38291686 | None:intergenic | 35.0% | |
| TGACCTACATGCAATCAAAA+AGG | + | chr4.1:38290711-38290730 | None:intergenic | 35.0% | |
| TGCTACTCAGAATTCAATCA+GGG | - | chr4.1:38290222-38290241 | MS.gene08580:intron | 35.0% | |
| TGGAGGATTTCTTTCACAAT+TGG | - | chr4.1:38291671-38291690 | MS.gene08580:intron | 35.0% | |
| TTATTTGAATTTGACGGCGA+AGG | + | chr4.1:38291155-38291174 | None:intergenic | 35.0% | |
| TTGGATTGAGGGTTTATGAA+GGG | + | chr4.1:38289797-38289816 | None:intergenic | 35.0% | |
| TTTGGATTGAGGGTTTATGA+AGG | + | chr4.1:38289798-38289817 | None:intergenic | 35.0% | |
| ! | AAAGGGTTTGTTTGGATTGA+GGG | + | chr4.1:38289808-38289827 | None:intergenic | 35.0% |
| ! | AACTAATTGAATGGATTCGG+GGG | + | chr4.1:38290949-38290968 | None:intergenic | 35.0% |
| ! | CAACTAATTGAATGGATTCG+GGG | + | chr4.1:38290950-38290969 | None:intergenic | 35.0% |
| ! | GCAACTAATTGAATGGATTC+GGG | + | chr4.1:38290951-38290970 | None:intergenic | 35.0% |
| ! | GCCAGATATTTCTATATTGC+TGG | - | chr4.1:38290906-38290925 | MS.gene08580:intron | 35.0% |
| ! | TTCTTATATTTGAGACCGGA+GGG | - | chr4.1:38289446-38289465 | MS.gene08580:CDS | 35.0% |
| ! | TTCTTATATTTGAGACCGGA+GGG | + | chr4.1:38289465-38289446 | None:intergenic | 35.0% |
| ! | TTTCTTATATTTGAGACCGG+AGG | - | chr4.1:38289445-38289464 | MS.gene08580:CDS | 35.0% |
| ! | TTTCTTATATTTGAGACCGG+AGG | + | chr4.1:38289464-38289445 | None:intergenic | 35.0% |
| !! | TTGAGTCTTGTTTGCTATCA+AGG | - | chr4.1:38289516-38289535 | MS.gene08580:intron | 35.0% |
| !!! | TGCTTGTTTTGGTTGTTTAC+AGG | - | chr4.1:38288992-38289011 | MS.gene08580:intron | 35.0% |
| AAACCCGAAAATTGGGCATT+AGG | - | chr4.1:38290782-38290801 | MS.gene08580:intron | 40.0% | |
| AAGGATTACCGTTATCACAC+AGG | - | chr4.1:38291448-38291467 | MS.gene08580:intron | 40.0% | |
| AATGCAACCGATGTAACTAG+TGG | + | chr4.1:38290377-38290396 | None:intergenic | 40.0% | |
| ACATGCAGCTGCAAATAACA+AGG | - | chr4.1:38290974-38290993 | MS.gene08580:intron | 40.0% | |
| ACCAAGAACTCTAAACAAGC+TGG | - | chr4.1:38290424-38290443 | MS.gene08580:intron | 40.0% | |
| AGCTATCTCCTCGACATTAT+CGG | + | chr4.1:38291387-38291406 | None:intergenic | 40.0% | |
| AGCTGAATCTTGAGTACTTG+TGG | - | chr4.1:38290292-38290311 | MS.gene08580:intron | 40.0% | |
| AGGATTACCGTTATCACACA+GGG | - | chr4.1:38291449-38291468 | MS.gene08580:intron | 40.0% | |
| ATTGAAGAATGTGTGAGAGC+TGG | - | chr4.1:38291708-38291727 | MS.gene08580:intron | 40.0% | |
| ATTGAGGGTTTATGAAGGGA+AGG | + | chr4.1:38289793-38289812 | None:intergenic | 40.0% | |
| CGAGAATAGCATTGTTCAAC+TGG | + | chr4.1:38289026-38289045 | None:intergenic | 40.0% | |
| GCAATTTGCAGCTGATAAGT+TGG | + | chr4.1:38290741-38290760 | None:intergenic | 40.0% | |
| GCTCTCACACATTCTTCAAT+AGG | + | chr4.1:38291708-38291727 | None:intergenic | 40.0% | |
| TATAACGTGGAGTACATTGC+TGG | - | chr4.1:38290102-38290121 | MS.gene08580:intron | 40.0% | |
| TGAAGCACAAACATAGACAC+CGG | - | chr4.1:38289843-38289862 | MS.gene08580:intron | 40.0% | |
| TTGAAGAATGTGTGAGAGCT+GGG | - | chr4.1:38291709-38291728 | MS.gene08580:intron | 40.0% | |
| TTGAGGGTTTATGAAGGGAA+GGG | + | chr4.1:38289792-38289811 | None:intergenic | 40.0% | |
| TTTGTAGGAGATGCCTTTGT+TGG | - | chr4.1:38291651-38291670 | MS.gene08580:intron | 40.0% | |
| ! | ACCAGCTTGTTTAGAGTTCT+TGG | + | chr4.1:38290428-38290447 | None:intergenic | 40.0% |
| ! | ACTAGTTACATCGGTTGCAT+TGG | - | chr4.1:38290376-38290395 | MS.gene08580:intron | 40.0% |
| ! | AGATTATTGCGTTTCTGGGA+AGG | - | chr4.1:38290150-38290169 | MS.gene08580:CDS | 40.0% |
| ! | ATTTTCGAAAGTTCGTGGCT+GGG | - | chr4.1:38291268-38291287 | MS.gene08580:intron | 40.0% |
| ! | CAAAGGGTTTGTTTGGATTG+AGG | + | chr4.1:38289809-38289828 | None:intergenic | 40.0% |
| ! | CACATATAAAGGGTGCAGAA+AGG | + | chr4.1:38291090-38291109 | None:intergenic | 40.0% |
| ! | CGTACATTTTCGAAAGTTCG+TGG | - | chr4.1:38291263-38291282 | MS.gene08580:intron | 40.0% |
| ! | CTAGTTACATCGGTTGCATT+GGG | - | chr4.1:38290377-38290396 | MS.gene08580:intron | 40.0% |
| ! | CTATTTAGGGTGTGTTTGGA+TGG | - | chr4.1:38289575-38289594 | MS.gene08580:intron | 40.0% |
| ! | GCACTGACAATTATGACTGA+AGG | + | chr4.1:38289961-38289980 | None:intergenic | 40.0% |
| ! | GGTACCTAATGCCCAATTTT+CGG | + | chr4.1:38290789-38290808 | None:intergenic | 40.0% |
| ! | GTACCTAATGCCCAATTTTC+GGG | + | chr4.1:38290788-38290807 | None:intergenic | 40.0% |
| ! | GTGCTACTCAGAATTCAATC+AGG | - | chr4.1:38290221-38290240 | MS.gene08580:intron | 40.0% |
| ! | TCTCATGCTTCTGCTTGTTT+TGG | - | chr4.1:38288981-38289000 | MS.gene08580:intron | 40.0% |
| ! | TTAGTTGATACCAATGGAGC+AGG | - | chr4.1:38291545-38291564 | MS.gene08580:CDS | 40.0% |
| !! | CATTCTGGGATTCAGGTATA+TGG | - | chr4.1:38291211-38291230 | MS.gene08580:intron | 40.0% |
| !! | GAAGGTGTTCTTCTTGGTAT+GGG | - | chr4.1:38288790-38288809 | MS.gene08580:CDS | 40.0% |
| !!! | TGCCCTATTGCTTTTTGAAG+TGG | - | chr4.1:38291571-38291590 | MS.gene08580:intron | 40.0% |
| ACAGCAGAAATGTCGAGAAG+GGG | + | chr4.1:38288820-38288839 | None:intergenic | 45.0% | |
| AGGCATCAGGAACACACAAA+AGG | - | chr4.1:38291429-38291448 | MS.gene08580:intron | 45.0% | |
| ATCAGCACCCTGTGTGATAA+CGG | + | chr4.1:38291459-38291478 | None:intergenic | 45.0% | |
| CAAACAGCACAAGTTCCTGT+AGG | + | chr4.1:38290576-38290595 | None:intergenic | 45.0% | |
| CAAGATATCCCAGTTGCCAA+AGG | - | chr4.1:38291409-38291428 | MS.gene08580:intron | 45.0% | |
| GAAGACGAGAATACACCTAC+AGG | - | chr4.1:38290558-38290577 | MS.gene08580:intron | 45.0% | |
| GAATTCAATCAGGGTTGCTC+AGG | - | chr4.1:38290231-38290250 | MS.gene08580:intron | 45.0% | |
| GACAGCAGAAATGTCGAGAA+GGG | + | chr4.1:38288821-38288840 | None:intergenic | 45.0% | |
| GTGCTACAATATACTCCCTC+CGG | - | chr4.1:38289311-38289330 | MS.gene08580:CDS | 45.0% | |
| TGAGTTCTTCAAGGATCCAC+AGG | - | chr4.1:38291108-38291127 | MS.gene08580:intron | 45.0% | |
| TGCATTGGGAAGGACAAGTT+TGG | - | chr4.1:38290391-38290410 | MS.gene08580:intron | 45.0% | |
| TGTGTTTGGATGGAGGGTTT+AGG | - | chr4.1:38289585-38289604 | MS.gene08580:intron | 45.0% | |
| TTAGGGTGTGTTTGGATGGA+GGG | - | chr4.1:38289579-38289598 | MS.gene08580:intron | 45.0% | |
| TTGACGGCGAAGGATTCTTA+CGG | + | chr4.1:38291145-38291164 | None:intergenic | 45.0% | |
| TTGTGTGTTCCTGATGCCTT+TGG | + | chr4.1:38291428-38291447 | None:intergenic | 45.0% | |
| TTTGGATGGAGGGTTTAGGA+GGG | - | chr4.1:38289589-38289608 | MS.gene08580:CDS | 45.0% | |
| ! | CATTTTCGAAAGTTCGTGGC+TGG | - | chr4.1:38291267-38291286 | MS.gene08580:intron | 45.0% |
| ! | TAGTGGTTGCTTCAAGTTCC+CGG | - | chr4.1:38290349-38290368 | MS.gene08580:intron | 45.0% |
| ! | TTACATCGGTTGCATTGGGA+AGG | - | chr4.1:38290381-38290400 | MS.gene08580:intron | 45.0% |
| ! | TTTAGGGTGTGTTTGGATGG+AGG | - | chr4.1:38289578-38289597 | MS.gene08580:intron | 45.0% |
| !! | ACTTGTGCTGTTTGTGTCGT+TGG | - | chr4.1:38290582-38290601 | MS.gene08580:intron | 45.0% |
| !! | GACCGGAGGGAGTATATTTT+AGG | - | chr4.1:38289459-38289478 | MS.gene08580:CDS | 45.0% |
| !! | GCTTTGGAAGGTGTTCTTCT+TGG | - | chr4.1:38288784-38288803 | MS.gene08580:CDS | 45.0% |
| !! | GGAAGGTGTTCTTCTTGGTA+TGG | - | chr4.1:38288789-38288808 | MS.gene08580:CDS | 45.0% |
| !! | GGATTTGCATTCTGGGATTC+AGG | - | chr4.1:38291204-38291223 | MS.gene08580:intron | 45.0% |
| !! | TTTGTGTCGTTGGTGGTGAA+AGG | - | chr4.1:38290592-38290611 | MS.gene08580:intron | 45.0% |
| AACGTGGAGTACATTGCTGG+AGG | - | chr4.1:38290105-38290124 | MS.gene08580:intron | 50.0% | |
| ACCGATGTAACTAGTGGCTC+CGG | + | chr4.1:38290371-38290390 | None:intergenic | 50.0% | |
| AGGGTTTATGAAGGGAAGGG+AGG | + | chr4.1:38289789-38289808 | None:intergenic | 50.0% | |
| CCATCTTGAGCAACACACAC+GGG | + | chr4.1:38291482-38291501 | None:intergenic | 50.0% | |
| CCCATCTTGAGCAACACACA+CGG | + | chr4.1:38291483-38291502 | None:intergenic | 50.0% | |
| CGACAGCAGAAATGTCGAGA+AGG | + | chr4.1:38288822-38288841 | None:intergenic | 50.0% | |
| GAGTGTCAGTGTTAGTGTCG+TGG | + | chr4.1:38289869-38289888 | None:intergenic | 50.0% | |
| GGGTTTATGAAGGGAAGGGA+GGG | + | chr4.1:38289788-38289807 | None:intergenic | 50.0% | |
| GGTTTATGAAGGGAAGGGAG+GGG | + | chr4.1:38289787-38289806 | None:intergenic | 50.0% | |
| GTAGGAGATGCCTTTGTTGG+AGG | - | chr4.1:38291654-38291673 | MS.gene08580:intron | 50.0% | |
| GTTTGGATGGAGGGTTTAGG+AGG | - | chr4.1:38289588-38289607 | MS.gene08580:CDS | 50.0% | |
| TACGGAAGAGCTTTCTCCTG+TGG | + | chr4.1:38291127-38291146 | None:intergenic | 50.0% | |
| TCCTGATGCCTTTGGCAACT+GGG | + | chr4.1:38291420-38291439 | None:intergenic | 50.0% | |
| TCTCCTCGACATTATCGGTC+TGG | + | chr4.1:38291382-38291401 | None:intergenic | 50.0% | |
| TGACCAGACCGATAATGTCG+AGG | - | chr4.1:38291376-38291395 | MS.gene08580:intron | 50.0% | |
| TTCCTGATGCCTTTGGCAAC+TGG | + | chr4.1:38291421-38291440 | None:intergenic | 50.0% | |
| TTGGATGGAGGGTTTAGGAG+GGG | - | chr4.1:38289590-38289609 | MS.gene08580:CDS | 50.0% | |
| ! | CAGAAGTGGATTCTACGGTC+TGG | + | chr4.1:38290499-38290518 | None:intergenic | 50.0% |
| ! | CCGTGTGTGTTGCTCAAGAT+GGG | - | chr4.1:38291480-38291499 | MS.gene08580:intron | 50.0% |
| ! | TAGGGCATTACCTGCTCCAT+TGG | + | chr4.1:38291558-38291577 | None:intergenic | 50.0% |
| !! | TGTGCTGTTTGTGTCGTTGG+TGG | - | chr4.1:38290585-38290604 | MS.gene08580:intron | 50.0% |
| ATGGAGGGTTTAGGAGGGGA+AGG | - | chr4.1:38289594-38289613 | MS.gene08580:CDS | 55.0% | |
| CCCGGAGCCACTAGTTACAT+CGG | - | chr4.1:38290367-38290386 | MS.gene08580:intron | 55.0% | |
| CCGATGTAACTAGTGGCTCC+GGG | + | chr4.1:38290370-38290389 | None:intergenic | 55.0% | |
| CTTCTCTGGGTAAGTGCAGC+CGG | + | chr4.1:38291766-38291785 | None:intergenic | 55.0% | |
| GTCAGTGTTAGTGTCGTGGC+CGG | + | chr4.1:38289865-38289884 | None:intergenic | 55.0% | |
| TGGAGGGTTTAGGAGGGGAA+GGG | - | chr4.1:38289595-38289614 | MS.gene08580:CDS | 55.0% | |
| TGGATTCGGGGGATACAGTG+AGG | + | chr4.1:38290938-38290957 | None:intergenic | 55.0% | |
| TGGGAAGGACAAGTTTGGCG+AGG | - | chr4.1:38290396-38290415 | MS.gene08580:intron | 55.0% | |
| TTCGAAAGTTCGTGGCTGGG+AGG | - | chr4.1:38291271-38291290 | MS.gene08580:intron | 55.0% | |
| ! | CCCGTGTGTGTTGCTCAAGA+TGG | - | chr4.1:38291479-38291498 | MS.gene08580:intron | 55.0% |
| !! | CGTTGGTGGTGAAAGGTGAG+AGG | - | chr4.1:38290599-38290618 | MS.gene08580:intron | 55.0% |
| !! | GTCAGTCGGTGTCAGACATC+TGG | - | chr4.1:38289930-38289949 | MS.gene08580:intron | 55.0% |
| !! | TCCCAGTTGCCAAAGGCATC+AGG | - | chr4.1:38291416-38291435 | MS.gene08580:intron | 55.0% |
| AGGGTTTAGGAGGGGAAGGG+AGG | - | chr4.1:38289598-38289617 | MS.gene08580:CDS | 60.0% | |
| GGGTTTAGGAGGGGAAGGGA+GGG | - | chr4.1:38289599-38289618 | MS.gene08580:CDS | 60.0% | |
| GGTTTAGGAGGGGAAGGGAG+GGG | - | chr4.1:38289600-38289619 | MS.gene08580:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 38288781 | 38291800 | 38288781 | ID=MS.gene08580 |
| chr4.1 | mRNA | 38288781 | 38291800 | 38288781 | ID=MS.gene08580.t1;Parent=MS.gene08580 |
| chr4.1 | exon | 38291718 | 38291800 | 38291718 | ID=MS.gene08580.t1.exon1;Parent=MS.gene08580.t1 |
| chr4.1 | CDS | 38291718 | 38291800 | 38291718 | ID=cds.MS.gene08580.t1;Parent=MS.gene08580.t1 |
| chr4.1 | exon | 38291514 | 38291567 | 38291514 | ID=MS.gene08580.t1.exon2;Parent=MS.gene08580.t1 |
| chr4.1 | CDS | 38291514 | 38291567 | 38291514 | ID=cds.MS.gene08580.t1;Parent=MS.gene08580.t1 |
| chr4.1 | exon | 38290455 | 38290501 | 38290455 | ID=MS.gene08580.t1.exon3;Parent=MS.gene08580.t1 |
| chr4.1 | CDS | 38290455 | 38290501 | 38290455 | ID=cds.MS.gene08580.t1;Parent=MS.gene08580.t1 |
| chr4.1 | exon | 38290329 | 38290360 | 38290329 | ID=MS.gene08580.t1.exon4;Parent=MS.gene08580.t1 |
| chr4.1 | CDS | 38290329 | 38290360 | 38290329 | ID=cds.MS.gene08580.t1;Parent=MS.gene08580.t1 |
| chr4.1 | exon | 38290128 | 38290229 | 38290128 | ID=MS.gene08580.t1.exon5;Parent=MS.gene08580.t1 |
| chr4.1 | CDS | 38290128 | 38290229 | 38290128 | ID=cds.MS.gene08580.t1;Parent=MS.gene08580.t1 |
| chr4.1 | exon | 38289968 | 38290035 | 38289968 | ID=MS.gene08580.t1.exon6;Parent=MS.gene08580.t1 |
| chr4.1 | CDS | 38289968 | 38290035 | 38289968 | ID=cds.MS.gene08580.t1;Parent=MS.gene08580.t1 |
| chr4.1 | exon | 38289778 | 38289854 | 38289778 | ID=MS.gene08580.t1.exon7;Parent=MS.gene08580.t1 |
| chr4.1 | CDS | 38289778 | 38289854 | 38289778 | ID=cds.MS.gene08580.t1;Parent=MS.gene08580.t1 |
| chr4.1 | exon | 38289586 | 38289683 | 38289586 | ID=MS.gene08580.t1.exon8;Parent=MS.gene08580.t1 |
| chr4.1 | CDS | 38289586 | 38289683 | 38289586 | ID=cds.MS.gene08580.t1;Parent=MS.gene08580.t1 |
| chr4.1 | exon | 38289438 | 38289508 | 38289438 | ID=MS.gene08580.t1.exon9;Parent=MS.gene08580.t1 |
| chr4.1 | CDS | 38289438 | 38289508 | 38289438 | ID=cds.MS.gene08580.t1;Parent=MS.gene08580.t1 |
| chr4.1 | exon | 38289289 | 38289355 | 38289289 | ID=MS.gene08580.t1.exon10;Parent=MS.gene08580.t1 |
| chr4.1 | CDS | 38289289 | 38289355 | 38289289 | ID=cds.MS.gene08580.t1;Parent=MS.gene08580.t1 |
| chr4.1 | exon | 38289015 | 38289198 | 38289015 | ID=MS.gene08580.t1.exon11;Parent=MS.gene08580.t1 |
| chr4.1 | CDS | 38289015 | 38289198 | 38289015 | ID=cds.MS.gene08580.t1;Parent=MS.gene08580.t1 |
| chr4.1 | exon | 38288781 | 38288923 | 38288781 | ID=MS.gene08580.t1.exon12;Parent=MS.gene08580.t1 |
| chr4.1 | CDS | 38288781 | 38288923 | 38288781 | ID=cds.MS.gene08580.t1;Parent=MS.gene08580.t1 |
| Gene Sequence |
| Protein sequence |
