Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08902.t1 | XP_013446514.1 | 96.4 | 362 | 13 | 0 | 5 | 366 | 75 | 436 | 6.10E-201 | 709.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08902.t1 | A0A2P1GIW7 | 33.5 | 358 | 190 | 10 | 5 | 346 | 79 | 404 | 1.2e-45 | 185.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08902.t1 | A0A072TTM6 | 96.4 | 362 | 13 | 0 | 5 | 366 | 75 | 436 | 4.4e-201 | 709.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04927 | MS.gene08902 | 0.821568 | 3.77E-53 | -1.69E-46 |
| MS.gene049549 | MS.gene08902 | 0.806334 | 8.65E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene08902 | 0.809637 | 1.72E-50 | -1.69E-46 |
| MS.gene05240 | MS.gene08902 | 0.824585 | 7.45E-54 | -1.69E-46 |
| MS.gene053406 | MS.gene08902 | 0.821721 | 3.47E-53 | -1.69E-46 |
| MS.gene054146 | MS.gene08902 | 0.811491 | 6.82E-51 | -1.69E-46 |
| MS.gene054421 | MS.gene08902 | 0.807349 | 5.28E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08902.t1 | MTR_8g079980 | 96.143 | 363 | 14 | 0 | 4 | 366 | 74 | 436 | 0.0 | 719 |
| MS.gene08902.t1 | MTR_8g079970 | 59.626 | 374 | 130 | 8 | 4 | 366 | 74 | 437 | 4.23e-152 | 436 |
| MS.gene08902.t1 | MTR_5g084870 | 57.808 | 365 | 141 | 5 | 4 | 364 | 74 | 429 | 4.20e-144 | 416 |
| MS.gene08902.t1 | MTR_5g084850 | 56.522 | 368 | 144 | 6 | 4 | 366 | 74 | 430 | 2.14e-140 | 406 |
| MS.gene08902.t1 | MTR_8g079950 | 54.595 | 370 | 155 | 6 | 4 | 366 | 74 | 437 | 3.40e-140 | 406 |
| MS.gene08902.t1 | MTR_5g084900 | 50.409 | 367 | 142 | 6 | 4 | 366 | 24 | 354 | 3.50e-118 | 347 |
| MS.gene08902.t1 | MTR_2g007880 | 36.292 | 383 | 209 | 12 | 4 | 366 | 89 | 456 | 3.81e-65 | 214 |
| MS.gene08902.t1 | MTR_3g086020 | 33.702 | 362 | 205 | 8 | 4 | 356 | 76 | 411 | 3.23e-58 | 194 |
| MS.gene08902.t1 | MTR_8g467580 | 30.909 | 385 | 227 | 15 | 4 | 366 | 75 | 442 | 1.39e-38 | 143 |
| MS.gene08902.t1 | MTR_8g467590 | 29.474 | 380 | 237 | 13 | 4 | 365 | 75 | 441 | 6.62e-38 | 141 |
| MS.gene08902.t1 | MTR_1g094790 | 28.831 | 385 | 240 | 12 | 4 | 366 | 75 | 447 | 8.92e-35 | 133 |
| MS.gene08902.t1 | MTR_7g110540 | 41.135 | 141 | 48 | 2 | 176 | 316 | 106 | 211 | 2.77e-26 | 105 |
| MS.gene08902.t1 | MTR_7g110540 | 54.902 | 51 | 22 | 1 | 4 | 54 | 56 | 105 | 5.94e-11 | 62.8 |
| MS.gene08902.t1 | MTR_8g096530 | 26.854 | 391 | 211 | 15 | 4 | 355 | 74 | 428 | 8.33e-21 | 93.6 |
| MS.gene08902.t1 | MTR_3g070170 | 23.716 | 409 | 241 | 15 | 4 | 360 | 81 | 470 | 2.88e-19 | 89.4 |
| MS.gene08902.t1 | MTR_7g086000 | 25.210 | 357 | 226 | 14 | 11 | 335 | 88 | 435 | 9.17e-18 | 84.7 |
| MS.gene08902.t1 | MTR_4g127650 | 24.538 | 379 | 238 | 13 | 5 | 352 | 90 | 451 | 9.42e-18 | 84.7 |
| MS.gene08902.t1 | MTR_4g013050 | 24.069 | 349 | 209 | 8 | 4 | 334 | 76 | 386 | 4.77e-17 | 82.4 |
| MS.gene08902.t1 | MTR_7g085990 | 24.934 | 377 | 232 | 12 | 1 | 338 | 75 | 439 | 1.84e-16 | 80.9 |
| MS.gene08902.t1 | MTR_3g026950 | 24.725 | 364 | 228 | 14 | 4 | 334 | 77 | 427 | 2.63e-16 | 80.5 |
| MS.gene08902.t1 | MTR_7g085930 | 24.202 | 376 | 236 | 11 | 1 | 338 | 79 | 443 | 3.68e-16 | 80.1 |
| MS.gene08902.t1 | MTR_3g098980 | 23.669 | 338 | 215 | 11 | 36 | 353 | 118 | 432 | 9.26e-15 | 75.5 |
| MS.gene08902.t1 | MTR_6g015850 | 24.528 | 318 | 210 | 9 | 55 | 349 | 139 | 449 | 3.99e-13 | 70.9 |
| MS.gene08902.t1 | MTR_1g053315 | 24.207 | 347 | 213 | 16 | 14 | 333 | 110 | 433 | 1.01e-12 | 69.3 |
| MS.gene08902.t1 | MTR_7g014200 | 23.249 | 357 | 231 | 11 | 11 | 334 | 98 | 444 | 3.21e-12 | 67.8 |
| MS.gene08902.t1 | MTR_7g084940 | 25.628 | 398 | 205 | 21 | 2 | 350 | 82 | 437 | 8.47e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08902.t1 | AT3G26040 | 35.340 | 382 | 208 | 12 | 4 | 366 | 74 | 435 | 3.81e-66 | 216 |
| MS.gene08902.t1 | AT1G24420 | 36.957 | 368 | 198 | 14 | 13 | 366 | 88 | 435 | 5.87e-59 | 197 |
| MS.gene08902.t1 | AT1G24420 | 36.957 | 368 | 198 | 14 | 13 | 366 | 88 | 435 | 5.87e-59 | 197 |
| MS.gene08902.t1 | AT1G24430 | 33.867 | 375 | 216 | 12 | 4 | 366 | 77 | 431 | 1.40e-53 | 183 |
| MS.gene08902.t1 | AT4G15390 | 31.234 | 381 | 230 | 13 | 4 | 366 | 79 | 445 | 2.78e-49 | 172 |
| MS.gene08902.t1 | AT4G15390 | 31.234 | 381 | 230 | 13 | 4 | 366 | 79 | 445 | 2.78e-49 | 172 |
| MS.gene08902.t1 | AT3G30280 | 30.688 | 378 | 235 | 12 | 4 | 366 | 77 | 442 | 1.31e-48 | 170 |
| MS.gene08902.t1 | AT5G47950 | 30.607 | 379 | 217 | 14 | 4 | 366 | 77 | 425 | 1.36e-45 | 161 |
| MS.gene08902.t1 | AT5G47980 | 31.818 | 374 | 230 | 13 | 8 | 366 | 79 | 442 | 2.48e-45 | 161 |
| MS.gene08902.t1 | AT5G23970 | 28.646 | 384 | 228 | 16 | 4 | 366 | 69 | 427 | 3.96e-38 | 142 |
| MS.gene08902.t1 | AT4G15400 | 30.366 | 382 | 227 | 15 | 4 | 366 | 73 | 434 | 5.27e-34 | 130 |
| MS.gene08902.t1 | AT2G19070 | 27.451 | 357 | 221 | 14 | 5 | 334 | 82 | 427 | 1.05e-21 | 96.3 |
| MS.gene08902.t1 | AT5G41040 | 24.294 | 354 | 200 | 14 | 8 | 327 | 92 | 411 | 1.13e-13 | 72.4 |
| MS.gene08902.t1 | AT5G41040 | 24.294 | 354 | 200 | 14 | 8 | 327 | 108 | 427 | 1.34e-13 | 72.0 |
| MS.gene08902.t1 | AT1G78990 | 25.157 | 318 | 205 | 12 | 13 | 312 | 95 | 397 | 1.36e-12 | 68.9 |
| MS.gene08902.t1 | AT1G32910 | 23.423 | 333 | 222 | 12 | 2 | 312 | 79 | 400 | 4.79e-11 | 64.3 |
Find 69 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCACATTCTGGGAAATT+TGG | 0.164798 | 4.4:-16530805 | None:intergenic |
| CCAATGTATGAAGCTGATTT+TGG | 0.192287 | 4.4:+16531300 | MS.gene08902:CDS |
| TCTATTACAAACTCACATTC+TGG | 0.246799 | 4.4:-16530814 | None:intergenic |
| TTCTCCTTCGCTATTCAATT+TGG | 0.251393 | 4.4:-16530704 | None:intergenic |
| TCTTTCCCTGCAAATTTCTT+TGG | 0.253467 | 4.4:-16531171 | None:intergenic |
| ATTTGTGTTTGAAGCTTCTA+AGG | 0.271551 | 4.4:+16530858 | MS.gene08902:CDS |
| AGCTTCAAACACAAATCTTT+TGG | 0.272043 | 4.4:-16530851 | None:intergenic |
| CTTTCAACTTCATGAATGAT+TGG | 0.304970 | 4.4:+16530680 | MS.gene08902:CDS |
| TTGGATGGGGAAAACCGATA+TGG | 0.308270 | 4.4:+16531319 | MS.gene08902:CDS |
| TTCTTCCATTGTAATTCATC+AGG | 0.324345 | 4.4:-16530550 | None:intergenic |
| AATACCAAGTCATGTAGTTC+CGG | 0.332848 | 4.4:-16531108 | None:intergenic |
| ACAAGTTACTACACCGGTTT+CGG | 0.350311 | 4.4:+16531227 | MS.gene08902:CDS |
| GTTTATCCAAAGAAATTTGC+AGG | 0.360964 | 4.4:+16531165 | MS.gene08902:CDS |
| TAAGTCCATGATGGTAAATC+TGG | 0.361121 | 4.4:+16530891 | MS.gene08902:CDS |
| AGTGTGTAGGGAACATAGTT+TGG | 0.402810 | 4.4:+16531067 | MS.gene08902:CDS |
| TTTCAACTTCATGAATGATT+GGG | 0.416199 | 4.4:+16530681 | MS.gene08902:CDS |
| ATACCAAGTCATGTAGTTCC+GGG | 0.423875 | 4.4:-16531107 | None:intergenic |
| GTTTGATTGTTTATGCTAGT+TGG | 0.451953 | 4.4:+16531268 | MS.gene08902:CDS |
| CTATTACAAACTCACATTCT+GGG | 0.456233 | 4.4:-16530813 | None:intergenic |
| TGGATGGGGAAAACCGATAT+GGG | 0.462617 | 4.4:+16531320 | MS.gene08902:CDS |
| TCCTGCATGAAGTAAATTGT+AGG | 0.464671 | 4.4:-16530755 | None:intergenic |
| TACAATGGAAGAACATGGAT+TGG | 0.478008 | 4.4:+16530560 | MS.gene08902:CDS |
| AAAACTATTGCATTCTTCAC+AGG | 0.486117 | 4.4:-16531360 | None:intergenic |
| GAAATTTGCAGGGAAAGAAA+AGG | 0.492493 | 4.4:+16531176 | MS.gene08902:CDS |
| CACTGTCTGATAAGTGTGTA+GGG | 0.492717 | 4.4:+16531055 | MS.gene08902:CDS |
| TTATAATCACTCTCCGAAAC+CGG | 0.495695 | 4.4:-16531240 | None:intergenic |
| CCAAAATCAGCTTCATACAT+TGG | 0.497579 | 4.4:-16531300 | None:intergenic |
| GTAATTCATCAGGGAACAAA+GGG | 0.498617 | 4.4:-16530540 | None:intergenic |
| GTACTCGTTGTCACCCATAT+CGG | 0.503047 | 4.4:-16531333 | None:intergenic |
| TAAGTGTGTGGTTTCTGCAT+TGG | 0.503085 | 4.4:+16530969 | MS.gene08902:CDS |
| CCCTACAATTTACTTCATGC+AGG | 0.509113 | 4.4:+16530754 | MS.gene08902:CDS |
| CAACCCGGAACTACATGACT+TGG | 0.515523 | 4.4:+16531104 | MS.gene08902:CDS |
| CAAAACGACATCGCTTCGCA+TGG | 0.522509 | 4.4:+16531002 | MS.gene08902:CDS |
| GGTTAGATTTGAACGAGAAG+TGG | 0.532468 | 4.4:+16531443 | MS.gene08902:CDS |
| TTTCTAGTTGCAAATATCGC+AGG | 0.535623 | 4.4:+16530469 | MS.gene08902:CDS |
| ATGGATACAAGAAATGGAGA+TGG | 0.538458 | 4.4:+16531384 | MS.gene08902:CDS |
| TGTAATTCATCAGGGAACAA+AGG | 0.542689 | 4.4:-16530541 | None:intergenic |
| GACATCGCTTCGCATGGCTG+TGG | 0.547958 | 4.4:+16531008 | MS.gene08902:CDS |
| ACCTTGATCGTTACATTCGA+TGG | 0.556319 | 4.4:-16530440 | None:intergenic |
| CCTGCATGAAGTAAATTGTA+GGG | 0.557210 | 4.4:-16530754 | None:intergenic |
| CAAAATTATAGACGCTGCAA+CGG | 0.559345 | 4.4:+16530657 | MS.gene08902:CDS |
| TGTGGATCTTCGTAGAAGAA+TGG | 0.565376 | 4.4:+16531026 | MS.gene08902:CDS |
| CCACTGTCTGATAAGTGTGT+AGG | 0.568598 | 4.4:+16531054 | MS.gene08902:CDS |
| TGAATCCAGATTTACCATCA+TGG | 0.569462 | 4.4:-16530896 | None:intergenic |
| CTTAAAACAAGTTACTACAC+CGG | 0.579115 | 4.4:+16531221 | MS.gene08902:CDS |
| AAAGTTACTTAAGTCCATGA+TGG | 0.580203 | 4.4:+16530882 | MS.gene08902:CDS |
| TCCATCGAATGTAACGATCA+AGG | 0.583886 | 4.4:+16530439 | MS.gene08902:CDS |
| TCTTCCATTGTAATTCATCA+GGG | 0.587466 | 4.4:-16530549 | None:intergenic |
| TTTATCCAAAGAAATTTGCA+GGG | 0.591630 | 4.4:+16531166 | MS.gene08902:CDS |
| ACATCATATCAAACAATACT+CGG | 0.595620 | 4.4:-16531492 | None:intergenic |
| TGCAATGATTTATAAGTGTG+TGG | 0.599319 | 4.4:+16530957 | MS.gene08902:CDS |
| AGTGACAACTTCTACACGTG+TGG | 0.613702 | 4.4:-16530935 | None:intergenic |
| GTTCTTGTTTGTTATCAACC+CGG | 0.616177 | 4.4:+16531089 | MS.gene08902:CDS |
| AACAATACTCGGATTAAGAG+AGG | 0.618426 | 4.4:-16531481 | None:intergenic |
| TGGGCCAAATTGAATAGCGA+AGG | 0.623888 | 4.4:+16530700 | MS.gene08902:CDS |
| TGAATTACAATGGAAGAACA+TGG | 0.628831 | 4.4:+16530555 | MS.gene08902:CDS |
| TTGGTATTCAAAATTAGACA+AGG | 0.635078 | 4.4:+16531123 | MS.gene08902:CDS |
| AAATTTGGCAAACTCCCTCG+TGG | 0.644808 | 4.4:-16530790 | None:intergenic |
| AATTTGGCAAACTCCCTCGT+GGG | 0.645915 | 4.4:-16530789 | None:intergenic |
| TGTTCCCTGATGAATTACAA+TGG | 0.646300 | 4.4:+16530545 | MS.gene08902:CDS |
| GTGACAACTTCTACACGTGT+GGG | 0.646828 | 4.4:-16530934 | None:intergenic |
| TGGTATTCAAAATTAGACAA+GGG | 0.652202 | 4.4:+16531124 | MS.gene08902:CDS |
| GATTAAGAGAGGCATACTGA+AGG | 0.662777 | 4.4:-16531470 | None:intergenic |
| CCTACACACTTATCAGACAG+TGG | 0.701128 | 4.4:-16531054 | None:intergenic |
| GGTAAATCTGGATTCACATG+AGG | 0.704642 | 4.4:+16530903 | MS.gene08902:CDS |
| GAGATACAATATTCCCACGA+GGG | 0.719170 | 4.4:+16530776 | MS.gene08902:CDS |
| ACACACTTATCAGACAGTGG+AGG | 0.730201 | 4.4:-16531051 | None:intergenic |
| GGAGATACAATATTCCCACG+AGG | 0.760478 | 4.4:+16530775 | MS.gene08902:CDS |
| GAATATGAAAGAGAGTGACA+TGG | 0.783909 | 4.4:+16531422 | MS.gene08902:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGCAAAAAAAAAAAAAATTA+AGG | + | chr4.4:16529992-16530011 | MS.gene08902:intron | 10.0% |
| !! | TTAAACACTTAATAACATTA+AGG | - | chr4.4:16529776-16529795 | None:intergenic | 15.0% |
| !! | AAAATAATATCGATGAAGTT+AGG | - | chr4.4:16530020-16530039 | None:intergenic | 20.0% |
| !! | GTTAAATTTAACCAATAATG+AGG | - | chr4.4:16529842-16529861 | None:intergenic | 20.0% |
| !!! | AGATTGCTTTAAAAAAACAA+AGG | + | chr4.4:16530154-16530173 | MS.gene08902:intron | 20.0% |
| !!! | ATTTTATTAATGAGAGTACA+AGG | + | chr4.4:16529948-16529967 | MS.gene08902:intron | 20.0% |
| !!! | ATTTTTCTATTTTTCCCAAT+TGG | + | chr4.4:16530035-16530054 | MS.gene08902:intron | 20.0% |
| ! | AATAACATTAAGGAACAAGT+GGG | - | chr4.4:16529766-16529785 | None:intergenic | 25.0% |
| ! | AATGATTACATCGATAATGA+TGG | + | chr4.4:16529811-16529830 | MS.gene08902:intron | 25.0% |
| ! | ATCATCGTAAAAGAAAAGTA+GGG | - | chr4.4:16530314-16530333 | None:intergenic | 25.0% |
| ! | TAATAACATTAAGGAACAAG+TGG | - | chr4.4:16529767-16529786 | None:intergenic | 25.0% |
| ! | TATATCAAGTGTTAGAATAC+TGG | + | chr4.4:16530103-16530122 | MS.gene08902:intron | 25.0% |
| ! | TATCATCGTAAAAGAAAAGT+AGG | - | chr4.4:16530315-16530334 | None:intergenic | 25.0% |
| ! | TGGTATTCAAAATTAGACAA+GGG | + | chr4.4:16531124-16531143 | MS.gene08902:CDS | 25.0% |
| ! | TTGGTATTCAAAATTAGACA+AGG | + | chr4.4:16531123-16531142 | MS.gene08902:CDS | 25.0% |
| ! | TTTATCCAAAGAAATTTGCA+GGG | + | chr4.4:16531166-16531185 | MS.gene08902:CDS | 25.0% |
| ! | TTTCAACTTCATGAATGATT+GGG | + | chr4.4:16530681-16530700 | MS.gene08902:CDS | 25.0% |
| !! | TTTGAGATAAAGAATTCTTG+AGG | - | chr4.4:16530372-16530391 | None:intergenic | 25.0% |
| !! | TTTTTAGACAAACTCCAATT+GGG | - | chr4.4:16530052-16530071 | None:intergenic | 25.0% |
| !!! | TTTTTTAGACAAACTCCAAT+TGG | - | chr4.4:16530053-16530072 | None:intergenic | 25.0% |
| AAAACTATTGCATTCTTCAC+AGG | - | chr4.4:16531363-16531382 | None:intergenic | 30.0% | |
| AAAGTTACTTAAGTCCATGA+TGG | + | chr4.4:16530882-16530901 | MS.gene08902:CDS | 30.0% | |
| AAGAGATAGGGAAATTTCTA+AGG | - | chr4.4:16530258-16530277 | None:intergenic | 30.0% | |
| ATGTGATCTATGAAAGAGAT+AGG | - | chr4.4:16530271-16530290 | None:intergenic | 30.0% | |
| CTATTACAAACTCACATTCT+GGG | - | chr4.4:16530816-16530835 | None:intergenic | 30.0% | |
| CTTAAAACAAGTTACTACAC+CGG | + | chr4.4:16531221-16531240 | MS.gene08902:CDS | 30.0% | |
| CTTTCAACTTCATGAATGAT+TGG | + | chr4.4:16530680-16530699 | MS.gene08902:CDS | 30.0% | |
| GTTTATCCAAAGAAATTTGC+AGG | + | chr4.4:16531165-16531184 | MS.gene08902:CDS | 30.0% | |
| GTTTGATTGTTTATGCTAGT+TGG | + | chr4.4:16531268-16531287 | MS.gene08902:CDS | 30.0% | |
| TCATCGTAAAAGAAAAGTAG+GGG | - | chr4.4:16530313-16530332 | None:intergenic | 30.0% | |
| TCTATTACAAACTCACATTC+TGG | - | chr4.4:16530817-16530836 | None:intergenic | 30.0% | |
| TCTTCCATTGTAATTCATCA+GGG | - | chr4.4:16530552-16530571 | None:intergenic | 30.0% | |
| TGAATTACAATGGAAGAACA+TGG | + | chr4.4:16530555-16530574 | MS.gene08902:CDS | 30.0% | |
| TGCAATGATTTATAAGTGTG+TGG | + | chr4.4:16530957-16530976 | MS.gene08902:CDS | 30.0% | |
| TGTGATCTATGAAAGAGATA+GGG | - | chr4.4:16530270-16530289 | None:intergenic | 30.0% | |
| TTCTTCCATTGTAATTCATC+AGG | - | chr4.4:16530553-16530572 | None:intergenic | 30.0% | |
| ! | AGCTTCAAACACAAATCTTT+TGG | - | chr4.4:16530854-16530873 | None:intergenic | 30.0% |
| ! | ATTTGTGTTTGAAGCTTCTA+AGG | + | chr4.4:16530858-16530877 | MS.gene08902:CDS | 30.0% |
| ! | CAAAGGGTTAAGCAAATTTT+CGG | - | chr4.4:16530527-16530546 | None:intergenic | 30.0% |
| !! | CAAATCAATTGTTTTGCATG+TGG | + | chr4.4:16530604-16530623 | MS.gene08902:CDS | 30.0% |
| !! | GTTTTGATGGATACAAGAAA+TGG | + | chr4.4:16531378-16531397 | MS.gene08902:CDS | 30.0% |
| !!! | GAAGAATGCAATAGTTTTGA+TGG | + | chr4.4:16531365-16531384 | MS.gene08902:CDS | 30.0% |
| AACAATACTCGGATTAAGAG+AGG | - | chr4.4:16531484-16531503 | None:intergenic | 35.0% | |
| AACAGAAACCTAGTGAGATA+TGG | + | chr4.4:16530177-16530196 | MS.gene08902:intron | 35.0% | |
| AACCTAGTGAGATATGGAAA+TGG | + | chr4.4:16530183-16530202 | MS.gene08902:intron | 35.0% | |
| AATACCAAGTCATGTAGTTC+CGG | - | chr4.4:16531111-16531130 | None:intergenic | 35.0% | |
| ATGGATACAAGAAATGGAGA+TGG | + | chr4.4:16531384-16531403 | MS.gene08902:CDS | 35.0% | |
| CAAAATTATAGACGCTGCAA+CGG | + | chr4.4:16530657-16530676 | MS.gene08902:CDS | 35.0% | |
| CCAAAATCAGCTTCATACAT+TGG | - | chr4.4:16531303-16531322 | None:intergenic | 35.0% | |
| CCTGCATGAAGTAAATTGTA+GGG | - | chr4.4:16530757-16530776 | None:intergenic | 35.0% | |
| GAAATTTGCAGGGAAAGAAA+AGG | + | chr4.4:16531176-16531195 | MS.gene08902:CDS | 35.0% | |
| GAATATGAAAGAGAGTGACA+TGG | + | chr4.4:16531422-16531441 | MS.gene08902:CDS | 35.0% | |
| GTAATTCATCAGGGAACAAA+GGG | - | chr4.4:16530543-16530562 | None:intergenic | 35.0% | |
| TAAGTCCATGATGGTAAATC+TGG | + | chr4.4:16530891-16530910 | MS.gene08902:CDS | 35.0% | |
| TACAATGGAAGAACATGGAT+TGG | + | chr4.4:16530560-16530579 | MS.gene08902:CDS | 35.0% | |
| TCCTGCATGAAGTAAATTGT+AGG | - | chr4.4:16530758-16530777 | None:intergenic | 35.0% | |
| TCTTTCCCTGCAAATTTCTT+TGG | - | chr4.4:16531174-16531193 | None:intergenic | 35.0% | |
| TGAATCCAGATTTACCATCA+TGG | - | chr4.4:16530899-16530918 | None:intergenic | 35.0% | |
| TGATGGAGATACCTCATTAT+TGG | + | chr4.4:16529828-16529847 | MS.gene08902:intron | 35.0% | |
| TGTAATTCATCAGGGAACAA+AGG | - | chr4.4:16530544-16530563 | None:intergenic | 35.0% | |
| TGTTCCCTGATGAATTACAA+TGG | + | chr4.4:16530545-16530564 | MS.gene08902:CDS | 35.0% | |
| TTATAATCACTCTCCGAAAC+CGG | - | chr4.4:16531243-16531262 | None:intergenic | 35.0% | |
| TTCCATTTCCATATCTCACT+AGG | - | chr4.4:16530188-16530207 | None:intergenic | 35.0% | |
| TTCTCCTTCGCTATTCAATT+TGG | - | chr4.4:16530707-16530726 | None:intergenic | 35.0% | |
| ! | AACTCACATTCTGGGAAATT+TGG | - | chr4.4:16530808-16530827 | None:intergenic | 35.0% |
| ! | AGATAGGGAAATTTCTAAGG+TGG | - | chr4.4:16530255-16530274 | None:intergenic | 35.0% |
| ! | ATTCTTGAGGTGTGAGATTT+TGG | - | chr4.4:16530359-16530378 | None:intergenic | 35.0% |
| ! | CAAGTGTTAGAATACTGGTT+AGG | + | chr4.4:16530108-16530127 | MS.gene08902:intron | 35.0% |
| !! | ATAGGGAAATTTCTAAGGTG+GGG | - | chr4.4:16530253-16530272 | None:intergenic | 35.0% |
| !! | ATCAATTGTTTTGCATGTGG+AGG | + | chr4.4:16530607-16530626 | MS.gene08902:CDS | 35.0% |
| !! | CCAATGTATGAAGCTGATTT+TGG | + | chr4.4:16531300-16531319 | MS.gene08902:CDS | 35.0% |
| !! | GATAGGGAAATTTCTAAGGT+GGG | - | chr4.4:16530254-16530273 | None:intergenic | 35.0% |
| !! | GTATGAAGCTGATTTTGGAT+GGG | + | chr4.4:16531305-16531324 | MS.gene08902:CDS | 35.0% |
| !! | GTTCTTGTTTGTTATCAACC+CGG | + | chr4.4:16531089-16531108 | MS.gene08902:CDS | 35.0% |
| !! | TATGAAGCTGATTTTGGATG+GGG | + | chr4.4:16531306-16531325 | MS.gene08902:CDS | 35.0% |
| !! | TGTATGAAGCTGATTTTGGA+TGG | + | chr4.4:16531304-16531323 | MS.gene08902:CDS | 35.0% |
| !! | TTTCTAGTTGCAAATATCGC+AGG | + | chr4.4:16530469-16530488 | MS.gene08902:CDS | 35.0% |
| !! | TTTTGAGAACATCACACTCT+AGG | - | chr4.4:16529913-16529932 | None:intergenic | 35.0% |
| ACCTTGATCGTTACATTCGA+TGG | - | chr4.4:16530443-16530462 | None:intergenic | 40.0% | |
| AGTGTGTAGGGAACATAGTT+TGG | + | chr4.4:16531067-16531086 | MS.gene08902:CDS | 40.0% | |
| ATACCAAGTCATGTAGTTCC+GGG | - | chr4.4:16531110-16531129 | None:intergenic | 40.0% | |
| CACTGTCTGATAAGTGTGTA+GGG | + | chr4.4:16531055-16531074 | MS.gene08902:CDS | 40.0% | |
| CCCTACAATTTACTTCATGC+AGG | + | chr4.4:16530754-16530773 | MS.gene08902:CDS | 40.0% | |
| GAGATACAATATTCCCACGA+GGG | + | chr4.4:16530776-16530795 | MS.gene08902:CDS | 40.0% | |
| GGTAAATCTGGATTCACATG+AGG | + | chr4.4:16530903-16530922 | MS.gene08902:CDS | 40.0% | |
| GGTTAGATTTGAACGAGAAG+TGG | + | chr4.4:16531443-16531462 | MS.gene08902:CDS | 40.0% | |
| TAAGTGTGTGGTTTCTGCAT+TGG | + | chr4.4:16530969-16530988 | MS.gene08902:CDS | 40.0% | |
| TCCATCGAATGTAACGATCA+AGG | + | chr4.4:16530439-16530458 | MS.gene08902:CDS | 40.0% | |
| TGTGGATCTTCGTAGAAGAA+TGG | + | chr4.4:16531026-16531045 | MS.gene08902:CDS | 40.0% | |
| ! | AAAGTAGGGGCACATAGTTA+CGG | - | chr4.4:16530300-16530319 | None:intergenic | 40.0% |
| ! | AATTTTCGGTGGGGTTTTTG+AGG | - | chr4.4:16530513-16530532 | None:intergenic | 40.0% |
| ! | AGAATACTGGTTAGGAACAC+AGG | + | chr4.4:16530116-16530135 | MS.gene08902:intron | 40.0% |
| ! | AGGGTTAAGCAAATTTTCGG+TGG | - | chr4.4:16530524-16530543 | None:intergenic | 40.0% |
| ! | GATTAAGAGAGGCATACTGA+AGG | - | chr4.4:16531473-16531492 | None:intergenic | 40.0% |
| ! | GGGTTAAGCAAATTTTCGGT+GGG | - | chr4.4:16530523-16530542 | None:intergenic | 40.0% |
| ! | GGTTAAGCAAATTTTCGGTG+GGG | - | chr4.4:16530522-16530541 | None:intergenic | 40.0% |
| !! | ACAAGTTACTACACCGGTTT+CGG | + | chr4.4:16531227-16531246 | MS.gene08902:CDS | 40.0% |
| !! | GGAACAAGTGGGTTAAATGA+TGG | - | chr4.4:16529755-16529774 | None:intergenic | 40.0% |
| AAATTTGGCAAACTCCCTCG+TGG | - | chr4.4:16530793-16530812 | None:intergenic | 45.0% | |
| AATTTGGCAAACTCCCTCGT+GGG | - | chr4.4:16530792-16530811 | None:intergenic | 45.0% | |
| ACACACTTATCAGACAGTGG+AGG | - | chr4.4:16531054-16531073 | None:intergenic | 45.0% | |
| AGTGACAACTTCTACACGTG+TGG | - | chr4.4:16530938-16530957 | None:intergenic | 45.0% | |
| ATCTTTGAACCTGCCTGCAA+AGG | - | chr4.4:16530413-16530432 | None:intergenic | 45.0% | |
| CCACTGTCTGATAAGTGTGT+AGG | + | chr4.4:16531054-16531073 | MS.gene08902:CDS | 45.0% | |
| CCTACACACTTATCAGACAG+TGG | - | chr4.4:16531057-16531076 | None:intergenic | 45.0% | |
| GGAGATACAATATTCCCACG+AGG | + | chr4.4:16530775-16530794 | MS.gene08902:CDS | 45.0% | |
| GTACTCGTTGTCACCCATAT+CGG | - | chr4.4:16531336-16531355 | None:intergenic | 45.0% | |
| GTGACAACTTCTACACGTGT+GGG | - | chr4.4:16530937-16530956 | None:intergenic | 45.0% | |
| TCCATATACTACCCCTTTGC+AGG | + | chr4.4:16530397-16530416 | MS.gene08902:intron | 45.0% | |
| TCTTTGAACCTGCCTGCAAA+GGG | - | chr4.4:16530412-16530431 | None:intergenic | 45.0% | |
| TGGATGGGGAAAACCGATAT+GGG | + | chr4.4:16531320-16531339 | MS.gene08902:CDS | 45.0% | |
| TGGGCCAAATTGAATAGCGA+AGG | + | chr4.4:16530700-16530719 | MS.gene08902:CDS | 45.0% | |
| TTGGATGGGGAAAACCGATA+TGG | + | chr4.4:16531319-16531338 | MS.gene08902:CDS | 45.0% | |
| !! | AGGGTTGTGTGAGTTTTGTG+AGG | + | chr4.4:16531143-16531162 | MS.gene08902:CDS | 45.0% |
| !! | GAAATTTCTAAGGTGGGGTG+GGG | - | chr4.4:16530248-16530267 | None:intergenic | 45.0% |
| !! | GGAAATTTCTAAGGTGGGGT+GGG | - | chr4.4:16530249-16530268 | None:intergenic | 45.0% |
| CAAAACGACATCGCTTCGCA+TGG | + | chr4.4:16531002-16531021 | MS.gene08902:CDS | 50.0% | |
| CAACCCGGAACTACATGACT+TGG | + | chr4.4:16531104-16531123 | MS.gene08902:CDS | 50.0% | |
| CTTTGAACCTGCCTGCAAAG+GGG | - | chr4.4:16530411-16530430 | None:intergenic | 50.0% | |
| GCCTGCAAAGGGGTAGTATA+TGG | - | chr4.4:16530401-16530420 | None:intergenic | 50.0% | |
| TATACTACCCCTTTGCAGGC+AGG | + | chr4.4:16530401-16530420 | MS.gene08902:intron | 50.0% | |
| !! | GGGAAATTTCTAAGGTGGGG+TGG | - | chr4.4:16530250-16530269 | None:intergenic | 50.0% |
| !! | TTTCTAAGGTGGGGTGGGGT+TGG | - | chr4.4:16530244-16530263 | None:intergenic | 55.0% |
| GACATCGCTTCGCATGGCTG+TGG | + | chr4.4:16531008-16531027 | MS.gene08902:CDS | 60.0% | |
| !! | TGGGGTGGGGTTGGTGATGA+GGG | - | chr4.4:16530235-16530254 | None:intergenic | 60.0% |
| !! | GTGGGGTGGGGTTGGTGATG+AGG | - | chr4.4:16530236-16530255 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 16529733 | 16531506 | 16529733 | ID=MS.gene08902 |
| chr4.4 | mRNA | 16529733 | 16531506 | 16529733 | ID=MS.gene08902.t1;Parent=MS.gene08902 |
| chr4.4 | exon | 16529733 | 16529745 | 16529733 | ID=MS.gene08902.t1.exon1;Parent=MS.gene08902.t1 |
| chr4.4 | CDS | 16529733 | 16529745 | 16529733 | ID=cds.MS.gene08902.t1;Parent=MS.gene08902.t1 |
| chr4.4 | exon | 16530419 | 16531506 | 16530419 | ID=MS.gene08902.t1.exon2;Parent=MS.gene08902.t1 |
| chr4.4 | CDS | 16530419 | 16531506 | 16530419 | ID=cds.MS.gene08902.t1;Parent=MS.gene08902.t1 |
| Gene Sequence |
| Protein sequence |
