Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08939.t1 | XP_003629697.1 | 95.4 | 194 | 7 | 1 | 1 | 192 | 1 | 194 | 1.10E-97 | 365.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08939.t1 | O64864 | 34.2 | 193 | 109 | 2 | 15 | 192 | 15 | 204 | 1.6e-28 | 127.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08939.t1 | G7LHX9 | 95.4 | 194 | 7 | 1 | 1 | 192 | 1 | 194 | 8.1e-98 | 365.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049346 | MS.gene08939 | 0.814201 | 1.74E-51 | -1.69E-46 |
| MS.gene050406 | MS.gene08939 | 0.810292 | 1.24E-50 | -1.69E-46 |
| MS.gene05101 | MS.gene08939 | 0.820001 | 8.64E-53 | -1.69E-46 |
| MS.gene05702 | MS.gene08939 | 0.809988 | 1.44E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08939 | MS.gene066915 | PPI |
| MS.gene08939 | MS.gene59892 | PPI |
| MS.gene08939 | MS.gene016280 | PPI |
| MS.gene08939 | MS.gene067247 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08939.t1 | MTR_8g085560 | 95.361 | 194 | 7 | 1 | 1 | 192 | 1 | 194 | 1.44e-131 | 367 |
| MS.gene08939.t1 | MTR_3g083760 | 47.059 | 187 | 80 | 2 | 23 | 192 | 18 | 202 | 1.27e-52 | 167 |
| MS.gene08939.t1 | MTR_3g083760 | 54.098 | 122 | 56 | 0 | 23 | 144 | 18 | 139 | 8.64e-47 | 150 |
| MS.gene08939.t1 | MTR_8g446830 | 38.728 | 173 | 104 | 2 | 15 | 185 | 13 | 185 | 5.61e-39 | 132 |
| MS.gene08939.t1 | MTR_7g014880 | 37.234 | 188 | 99 | 4 | 15 | 189 | 10 | 191 | 2.71e-38 | 130 |
| MS.gene08939.t1 | MTR_1g103450 | 37.736 | 106 | 58 | 3 | 9 | 113 | 6 | 104 | 4.57e-12 | 61.6 |
| MS.gene08939.t1 | MTR_1g103470 | 41.096 | 73 | 40 | 1 | 33 | 105 | 25 | 94 | 8.59e-12 | 60.8 |
| MS.gene08939.t1 | MTR_5g006950 | 27.778 | 144 | 94 | 4 | 15 | 154 | 12 | 149 | 4.09e-11 | 59.3 |
| MS.gene08939.t1 | MTR_5g006940 | 34.862 | 109 | 64 | 4 | 10 | 113 | 6 | 112 | 6.10e-11 | 59.7 |
| MS.gene08939.t1 | MTR_1g103490 | 39.024 | 82 | 48 | 2 | 33 | 113 | 25 | 105 | 8.01e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08939.t1 | AT2G44300 | 36.275 | 204 | 110 | 3 | 6 | 192 | 3 | 203 | 4.46e-42 | 140 |
| MS.gene08939.t1 | AT2G44290 | 35.567 | 194 | 107 | 2 | 14 | 192 | 14 | 204 | 1.15e-41 | 139 |
| MS.gene08939.t1 | AT1G55260 | 41.622 | 185 | 96 | 5 | 10 | 190 | 50 | 226 | 1.35e-41 | 140 |
| MS.gene08939.t1 | AT1G55260 | 41.209 | 182 | 98 | 4 | 10 | 190 | 50 | 223 | 1.74e-41 | 139 |
| MS.gene08939.t1 | AT3G58550 | 39.333 | 150 | 88 | 2 | 8 | 154 | 10 | 159 | 2.84e-33 | 117 |
| MS.gene08939.t1 | AT3G22600 | 32.967 | 91 | 60 | 1 | 15 | 105 | 7 | 96 | 6.17e-14 | 67.0 |
| MS.gene08939.t1 | AT2G48130 | 35.000 | 100 | 63 | 2 | 15 | 113 | 9 | 107 | 1.74e-13 | 65.9 |
| MS.gene08939.t1 | AT2G48130 | 35.000 | 100 | 63 | 2 | 15 | 113 | 9 | 107 | 1.74e-13 | 65.9 |
| MS.gene08939.t1 | AT2G48130 | 35.000 | 100 | 63 | 2 | 15 | 113 | 9 | 107 | 1.74e-13 | 65.9 |
| MS.gene08939.t1 | AT2G48130 | 35.000 | 100 | 63 | 2 | 15 | 113 | 9 | 107 | 1.74e-13 | 65.9 |
| MS.gene08939.t1 | AT2G48130 | 35.000 | 100 | 63 | 2 | 15 | 113 | 9 | 107 | 1.74e-13 | 65.9 |
| MS.gene08939.t1 | AT2G48130 | 35.000 | 100 | 63 | 2 | 15 | 113 | 9 | 107 | 1.74e-13 | 65.9 |
| MS.gene08939.t1 | AT1G73890 | 36.471 | 85 | 54 | 0 | 29 | 113 | 23 | 107 | 4.03e-13 | 65.1 |
| MS.gene08939.t1 | AT4G14815 | 35.106 | 94 | 57 | 2 | 15 | 108 | 8 | 97 | 9.44e-12 | 60.8 |
| MS.gene08939.t1 | AT1G03103 | 32.967 | 91 | 57 | 1 | 15 | 105 | 8 | 94 | 3.82e-11 | 59.3 |
| MS.gene08939.t1 | AT1G05450 | 29.448 | 163 | 103 | 4 | 13 | 169 | 10 | 166 | 6.53e-11 | 59.3 |
Find 50 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTAGCCTCATGTGATTT+AGG | 0.238066 | 4.4:+14584253 | None:intergenic |
| ACAATCTATGGTTGGAGATT+TGG | 0.249161 | 4.4:+14584545 | None:intergenic |
| TACAATCCTTTGGTAACTTA+AGG | 0.268613 | 4.4:+14584415 | None:intergenic |
| GACACCAGTGCAACAATCTA+TGG | 0.281431 | 4.4:+14584533 | None:intergenic |
| ACCAATACATTGAGTTATAT+TGG | 0.304514 | 4.4:+14584383 | None:intergenic |
| TTTATAGTTAAACCAAGGTT+TGG | 0.345145 | 4.4:+14584450 | None:intergenic |
| GGTCATCATGATCTTTGATA+AGG | 0.380512 | 4.4:+14584472 | None:intergenic |
| ACAATCCTTTGGTAACTTAA+GGG | 0.380953 | 4.4:+14584416 | None:intergenic |
| GACAAGAACGGTGGCGGTTG+TGG | 0.396527 | 4.4:-14582530 | MS.gene08939:CDS |
| CGGTGCATTCTGCTTTGTCT+TGG | 0.411232 | 4.4:+14584616 | None:intergenic |
| GACAAACTCCTTACTTTGGC+TGG | 0.412680 | 4.4:-14584594 | MS.gene08939:CDS |
| GTAGGTGAGTTACAATCCTT+TGG | 0.416024 | 4.4:+14584405 | None:intergenic |
| TTATAGTTAAACCAAGGTTT+GGG | 0.422627 | 4.4:+14584451 | None:intergenic |
| CTCTTGGTAGAGGTGCTTTG+TGG | 0.443821 | 4.4:-14582497 | MS.gene08939:CDS |
| ACCAATATAACTCAATGTAT+TGG | 0.457228 | 4.4:-14584384 | MS.gene08939:intron |
| CACCGACAAACTCCTTACTT+TGG | 0.466376 | 4.4:-14584598 | MS.gene08939:CDS |
| GAAGACAACCAGCCAAAGTA+AGG | 0.470397 | 4.4:+14584586 | None:intergenic |
| ACATGAGGCTAAGGTATTTG+AGG | 0.480429 | 4.4:-14584245 | MS.gene08939:CDS |
| ACCTAAATCACATGAGGCTA+AGG | 0.495814 | 4.4:-14584254 | MS.gene08939:CDS |
| TTTGTCTTGGTTAATATCTG+AGG | 0.495906 | 4.4:+14584629 | None:intergenic |
| AAGTAGGAAACTAAAACAAA+TGG | 0.516446 | 4.4:+14582467 | None:intergenic |
| AAAGAGGTGGCTCTTGGTAG+AGG | 0.525495 | 4.4:-14582507 | MS.gene08939:CDS |
| ACTTCCACCGCAGTTCCTCC+AGG | 0.529242 | 4.4:-14584196 | MS.gene08939:intron |
| CATAAGGACTAGGAAAATCA+AGG | 0.531221 | 4.4:+14584665 | None:intergenic |
| GATCATGATGACCCAAACCT+TGG | 0.532203 | 4.4:-14584462 | MS.gene08939:CDS |
| TTGGCTTGATTAGTCACAAA+GGG | 0.535509 | 4.4:+14584564 | None:intergenic |
| TTGTGGAAAGAGGTGGCTCT+TGG | 0.535765 | 4.4:-14582513 | MS.gene08939:CDS |
| AGTTCAAACTACGAAGAAGT+AGG | 0.542772 | 4.4:+14582451 | None:intergenic |
| CTTTGGTAACTTAAGGGCAA+GGG | 0.546332 | 4.4:+14584422 | None:intergenic |
| CCTTTGGTAACTTAAGGGCA+AGG | 0.546657 | 4.4:+14584421 | None:intergenic |
| AGGTTACAAGACCAAACATA+AGG | 0.547469 | 4.4:+14584649 | None:intergenic |
| CCAACCATAGATTGTTGCAC+TGG | 0.548725 | 4.4:-14584537 | MS.gene08939:CDS |
| TGTGCTTGTTTCATTTCCAG+TGG | 0.551525 | 4.4:+14582562 | None:intergenic |
| ATTGCAGCTAGTGGTACCAC+TGG | 0.560811 | 4.4:-14582578 | MS.gene08939:intron |
| CCTTGCCCTTAAGTTACCAA+AGG | 0.561963 | 4.4:-14584421 | MS.gene08939:CDS |
| ACGGTGGCGGTTGTGGAAAG+AGG | 0.565669 | 4.4:-14582523 | MS.gene08939:CDS |
| CAAGACCAAACATAAGGACT+AGG | 0.566810 | 4.4:+14584655 | None:intergenic |
| AGCCAAAGTAAGGAGTTTGT+CGG | 0.567852 | 4.4:+14584596 | None:intergenic |
| ATACATTGAGTTATATTGGT+AGG | 0.586657 | 4.4:+14584387 | None:intergenic |
| GCTCAAGACAAGAACGGTGG+CGG | 0.587172 | 4.4:-14582536 | MS.gene08939:CDS |
| CCAGTGCAACAATCTATGGT+TGG | 0.604106 | 4.4:+14584537 | None:intergenic |
| GTGGCGGTTGTGGAAAGAGG+TGG | 0.614207 | 4.4:-14582520 | MS.gene08939:CDS |
| TAACATTTATAGTTAAACCA+AGG | 0.621795 | 4.4:+14584445 | None:intergenic |
| TTTGGCTTGATTAGTCACAA+AGG | 0.627914 | 4.4:+14584563 | None:intergenic |
| TTTGAAACCTAAATCACATG+AGG | 0.643872 | 4.4:-14584260 | MS.gene08939:CDS |
| TTTACCTGGAGGAACTGCGG+TGG | 0.660595 | 4.4:+14584192 | None:intergenic |
| AAATTTACCTGGAGGAACTG+CGG | 0.666666 | 4.4:+14584189 | None:intergenic |
| ACAATTGCTCAAGACAAGAA+CGG | 0.667135 | 4.4:-14582542 | MS.gene08939:CDS |
| TTGTTGCACTGGTGTCAAAG+AGG | 0.679195 | 4.4:-14584526 | MS.gene08939:CDS |
| ATTGCTCAAGACAAGAACGG+TGG | 0.760005 | 4.4:-14582539 | MS.gene08939:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTATTAAAATATTTA+GGG | - | chr4.4:14583824-14583843 | MS.gene08939:intron | 0.0% |
| !! | AAAAATGTACTATAAATAAA+GGG | + | chr4.4:14583511-14583530 | None:intergenic | 10.0% |
| !! | AATTAAATATCAAATTTAAC+AGG | + | chr4.4:14583950-14583969 | None:intergenic | 10.0% |
| !! | ATATATACATTATTATGTAA+TGG | + | chr4.4:14583248-14583267 | None:intergenic | 10.0% |
| !!! | ATTTTGTATAATTTCATATT+AGG | - | chr4.4:14583894-14583913 | MS.gene08939:intron | 10.0% |
| !! | AAAATGTACTATAAATAAAG+GGG | + | chr4.4:14583510-14583529 | None:intergenic | 15.0% |
| !! | AATAGTAAATAAAATTTACC+TGG | + | chr4.4:14582984-14583003 | None:intergenic | 15.0% |
| !! | AATATAAAAACAAAAGACTA+AGG | - | chr4.4:14583023-14583042 | MS.gene08939:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | + | chr4.4:14583446-14583465 | None:intergenic | 15.0% |
| !! | GAAAAATGTACTATAAATAA+AGG | + | chr4.4:14583512-14583531 | None:intergenic | 15.0% |
| !! | GTTTAAAAATTAATGAAGTA+TGG | - | chr4.4:14583760-14583779 | MS.gene08939:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | chr4.4:14583447-14583466 | None:intergenic | 15.0% |
| !! | TTCTATTTGTTTGTTTATAT+GGG | + | chr4.4:14584224-14584243 | None:intergenic | 15.0% |
| !! | TTTCTATTTGTTTGTTTATA+TGG | + | chr4.4:14584225-14584244 | None:intergenic | 15.0% |
| !!! | ACAAATAAAAAGTATCATTT+GGG | + | chr4.4:14584392-14584411 | None:intergenic | 15.0% |
| !!! | CAATTTCTTTTTTTAAAGTT+AGG | + | chr4.4:14584304-14584323 | None:intergenic | 15.0% |
| !!! | GACACTTTTTTTAAAAAAAT+GGG | + | chr4.4:14583377-14583396 | None:intergenic | 15.0% |
| !!! | TTTTTAAACTTTTAATGCAA+TGG | - | chr4.4:14584125-14584144 | MS.gene08939:intron | 15.0% |
| !! | AAAAAAAGAAATTGATGTAG+AGG | - | chr4.4:14584310-14584329 | MS.gene08939:intron | 20.0% |
| !! | GTTTGAAGAGAATAAAAATT+AGG | - | chr4.4:14583916-14583935 | MS.gene08939:intron | 20.0% |
| !! | TAACATTTATAGTTAAACCA+AGG | + | chr4.4:14582717-14582736 | None:intergenic | 20.0% |
| !! | TTATTAAAGATCATATAGTG+TGG | + | chr4.4:14583303-14583322 | None:intergenic | 20.0% |
| !!! | GACAAATAAAAAGTATCATT+TGG | + | chr4.4:14584393-14584412 | None:intergenic | 20.0% |
| !!! | GGACACTTTTTTTAAAAAAA+TGG | + | chr4.4:14583378-14583397 | None:intergenic | 20.0% |
| !!! | TATTTTTGGATAAAAGTGAT+TGG | - | chr4.4:14584542-14584561 | MS.gene08939:CDS | 20.0% |
| !!! | TCCTTGTATTTTACTAATTT+GGG | + | chr4.4:14583058-14583077 | None:intergenic | 20.0% |
| !!! | TGAAACAAATATCAAACTTT+TGG | + | chr4.4:14582868-14582887 | None:intergenic | 20.0% |
| !!! | TGATTTAAAATTTCCACTTT+TGG | + | chr4.4:14584095-14584114 | None:intergenic | 20.0% |
| !!! | TTCCTTGTATTTTACTAATT+TGG | + | chr4.4:14583059-14583078 | None:intergenic | 20.0% |
| !!! | TTTTCTATCACATAATAAAG+TGG | - | chr4.4:14583166-14583185 | MS.gene08939:intron | 20.0% |
| ! | AAGTAGGAAACTAAAACAAA+TGG | + | chr4.4:14584695-14584714 | None:intergenic | 25.0% |
| ! | ACCAATACATTGAGTTATAT+TGG | + | chr4.4:14582779-14582798 | None:intergenic | 25.0% |
| ! | ACCAATATAACTCAATGTAT+TGG | - | chr4.4:14582775-14582794 | MS.gene08939:intron | 25.0% |
| ! | ACCCAAATTAGTAAAATACA+AGG | - | chr4.4:14583054-14583073 | MS.gene08939:intron | 25.0% |
| ! | AGTAAATAAAATTTACCTGG+AGG | + | chr4.4:14582981-14583000 | None:intergenic | 25.0% |
| ! | ATACATTGAGTTATATTGGT+AGG | + | chr4.4:14582775-14582794 | None:intergenic | 25.0% |
| ! | TTATAGTTAAACCAAGGTTT+GGG | + | chr4.4:14582711-14582730 | None:intergenic | 25.0% |
| ! | TTTATAGTTAAACCAAGGTT+TGG | + | chr4.4:14582712-14582731 | None:intergenic | 25.0% |
| !! | ATCTCATTTGATTTCATTCT+AGG | - | chr4.4:14584481-14584500 | MS.gene08939:CDS | 25.0% |
| !! | TATTTTTCTCCAAGGATTTT+TGG | + | chr4.4:14582944-14582963 | None:intergenic | 25.0% |
| !! | TTGAAATGACTCAGTTATTT+TGG | + | chr4.4:14583400-14583419 | None:intergenic | 25.0% |
| !!! | CACTATTTTGATTGACATTT+GGG | + | chr4.4:14583597-14583616 | None:intergenic | 25.0% |
| !!! | TCACTATTTTGATTGACATT+TGG | + | chr4.4:14583598-14583617 | None:intergenic | 25.0% |
| !!! | TGAAATGACTCAGTTATTTT+GGG | + | chr4.4:14583399-14583418 | None:intergenic | 25.0% |
| !!! | TGATCTTGCTTGTTTATTTT+TGG | - | chr4.4:14584528-14584547 | MS.gene08939:CDS | 25.0% |
| AAAAAATGGGTCAGATATTC+TGG | + | chr4.4:14583364-14583383 | None:intergenic | 30.0% | |
| AAAAATGGGTCAGATATTCT+GGG | + | chr4.4:14583363-14583382 | None:intergenic | 30.0% | |
| AAAATACAAGGAAGTCAAGA+AGG | - | chr4.4:14583066-14583085 | MS.gene08939:intron | 30.0% | |
| AAATACAAGGAAGTCAAGAA+GGG | - | chr4.4:14583067-14583086 | MS.gene08939:intron | 30.0% | |
| AATTCATTAATTGCAGCTAG+TGG | - | chr4.4:14584572-14584591 | MS.gene08939:CDS | 30.0% | |
| ACTATAAATAAAGGGGAAAG+TGG | + | chr4.4:14583503-14583522 | None:intergenic | 30.0% | |
| AGACTCGAAAAACAAATTGA+GGG | - | chr4.4:14584365-14584384 | MS.gene08939:intron | 30.0% | |
| CCTAGGTTTGTATATATCAA+CGG | - | chr4.4:14583107-14583126 | MS.gene08939:intron | 30.0% | |
| CTAGGTTTGTATATATCAAC+GGG | - | chr4.4:14583108-14583127 | MS.gene08939:intron | 30.0% | |
| CTTAATAGAGATTAGAGTGA+AGG | + | chr4.4:14584460-14584479 | None:intergenic | 30.0% | |
| GTTCTCTTAACAAAACATGA+AGG | + | chr4.4:14584438-14584457 | None:intergenic | 30.0% | |
| TTTACTAATTTGGGTCATGT+GGG | + | chr4.4:14583049-14583068 | None:intergenic | 30.0% | |
| TTTGTCTTGGTTAATATCTG+AGG | + | chr4.4:14582533-14582552 | None:intergenic | 30.0% | |
| ! | ACAATCCTTTGGTAACTTAA+GGG | + | chr4.4:14582746-14582765 | None:intergenic | 30.0% |
| ! | ATTTTCCTAGTCCTTATGTT+TGG | - | chr4.4:14582499-14582518 | MS.gene08939:CDS | 30.0% |
| ! | TACAATCCTTTGGTAACTTA+AGG | + | chr4.4:14582747-14582766 | None:intergenic | 30.0% |
| ! | TTTGAAACCTAAATCACATG+AGG | - | chr4.4:14582899-14582918 | MS.gene08939:intron | 30.0% |
| ! | TTTTACTAATTTGGGTCATG+TGG | + | chr4.4:14583050-14583069 | None:intergenic | 30.0% |
| ACAATCTATGGTTGGAGATT+TGG | + | chr4.4:14582617-14582636 | None:intergenic | 35.0% | |
| ACAATTGCTCAAGACAAGAA+CGG | - | chr4.4:14584617-14584636 | MS.gene08939:CDS | 35.0% | |
| AGGTTACAAGACCAAACATA+AGG | + | chr4.4:14582513-14582532 | None:intergenic | 35.0% | |
| CATAAGGACTAGGAAAATCA+AGG | + | chr4.4:14582497-14582516 | None:intergenic | 35.0% | |
| CCGTTGATATATACAAACCT+AGG | + | chr4.4:14583110-14583129 | None:intergenic | 35.0% | |
| GAGACTCGAAAAACAAATTG+AGG | - | chr4.4:14584364-14584383 | MS.gene08939:intron | 35.0% | |
| GATATATACAAACCTAGGTG+TGG | + | chr4.4:14583105-14583124 | None:intergenic | 35.0% | |
| GGTCATCATGATCTTTGATA+AGG | + | chr4.4:14582690-14582709 | None:intergenic | 35.0% | |
| TAACAAAACATGAAGGCCTA+AGG | + | chr4.4:14584431-14584450 | None:intergenic | 35.0% | |
| ! | TTGGCTTGATTAGTCACAAA+GGG | + | chr4.4:14582598-14582617 | None:intergenic | 35.0% |
| !! | TTTGGCTTGATTAGTCACAA+AGG | + | chr4.4:14582599-14582618 | None:intergenic | 35.0% |
| AAATTTACCTGGAGGAACTG+CGG | + | chr4.4:14582973-14582992 | None:intergenic | 40.0% | |
| ACCTAAATCACATGAGGCTA+AGG | - | chr4.4:14582905-14582924 | MS.gene08939:intron | 40.0% | |
| ACCTTAGCCTCATGTGATTT+AGG | + | chr4.4:14582909-14582928 | None:intergenic | 40.0% | |
| AGCCAAAGTAAGGAGTTTGT+CGG | + | chr4.4:14582566-14582585 | None:intergenic | 40.0% | |
| CAACGACTCTAAATAGCCTT+AGG | - | chr4.4:14584412-14584431 | MS.gene08939:CDS | 40.0% | |
| CAAGACCAAACATAAGGACT+AGG | + | chr4.4:14582507-14582526 | None:intergenic | 40.0% | |
| CATATAGTGTGGTCCAGTAA+GGG | + | chr4.4:14583292-14583311 | None:intergenic | 40.0% | |
| CTGGTTAAGGAATCCAAAAG+TGG | - | chr4.4:14584079-14584098 | MS.gene08939:intron | 40.0% | |
| GTAGGTGAGTTACAATCCTT+TGG | + | chr4.4:14582757-14582776 | None:intergenic | 40.0% | |
| TATACAAACCTAGGTGTGGA+TGG | + | chr4.4:14583101-14583120 | None:intergenic | 40.0% | |
| TCATATAGTGTGGTCCAGTA+AGG | + | chr4.4:14583293-14583312 | None:intergenic | 40.0% | |
| TCCCAATTTATCTGAGCCAA+GGG | + | chr4.4:14583554-14583573 | None:intergenic | 40.0% | |
| TGAGGACTTCCAAAAATCCT+TGG | - | chr4.4:14582932-14582951 | MS.gene08939:intron | 40.0% | |
| TGTGCTTGTTTCATTTCCAG+TGG | + | chr4.4:14584600-14584619 | None:intergenic | 40.0% | |
| TTGGCTCAGATAAATTGGGA+CGG | - | chr4.4:14583554-14583573 | MS.gene08939:intron | 40.0% | |
| ! | ACATGAGGCTAAGGTATTTG+AGG | - | chr4.4:14582914-14582933 | MS.gene08939:intron | 40.0% |
| ! | AGCGTAGCATTGAAACTTCA+AGG | - | chr4.4:14584255-14584274 | MS.gene08939:CDS | 40.0% |
| ! | CTTTGGTAACTTAAGGGCAA+GGG | + | chr4.4:14582740-14582759 | None:intergenic | 40.0% |
| !!! | GGTGGAAGTATTTTTCTCCA+AGG | + | chr4.4:14582952-14582971 | None:intergenic | 40.0% |
| AGCCCTTGGCTCAGATAAAT+TGG | - | chr4.4:14583549-14583568 | MS.gene08939:intron | 45.0% | |
| ATCTGTGTGAAATGAGCCCT+TGG | - | chr4.4:14583535-14583554 | MS.gene08939:intron | 45.0% | |
| ATTGCTCAAGACAAGAACGG+TGG | - | chr4.4:14584620-14584639 | MS.gene08939:CDS | 45.0% | |
| CACCGACAAACTCCTTACTT+TGG | - | chr4.4:14582561-14582580 | MS.gene08939:CDS | 45.0% | |
| CCAACCATAGATTGTTGCAC+TGG | - | chr4.4:14582622-14582641 | MS.gene08939:intron | 45.0% | |
| CCAGTGCAACAATCTATGGT+TGG | + | chr4.4:14582625-14582644 | None:intergenic | 45.0% | |
| CCTTGCCCTTAAGTTACCAA+AGG | - | chr4.4:14582738-14582757 | MS.gene08939:intron | 45.0% | |
| CTCAGATAAATTGGGACGGA+GGG | - | chr4.4:14583558-14583577 | MS.gene08939:intron | 45.0% | |
| GAAGACAACCAGCCAAAGTA+AGG | + | chr4.4:14582576-14582595 | None:intergenic | 45.0% | |
| GACAAACTCCTTACTTTGGC+TGG | - | chr4.4:14582565-14582584 | MS.gene08939:CDS | 45.0% | |
| GACACCAGTGCAACAATCTA+TGG | + | chr4.4:14582629-14582648 | None:intergenic | 45.0% | |
| GATCATGATGACCCAAACCT+TGG | - | chr4.4:14582697-14582716 | MS.gene08939:intron | 45.0% | |
| GCCCTTGGCTCAGATAAATT+GGG | - | chr4.4:14583550-14583569 | MS.gene08939:intron | 45.0% | |
| GGTTGCACAACTTTCAAAGC+AGG | - | chr4.4:14584146-14584165 | MS.gene08939:intron | 45.0% | |
| GTCCCAATTTATCTGAGCCA+AGG | + | chr4.4:14583555-14583574 | None:intergenic | 45.0% | |
| TACAAGGAAGTCAAGAAGGG+TGG | - | chr4.4:14583070-14583089 | MS.gene08939:intron | 45.0% | |
| TGGAATTTCCATCCACACCT+AGG | - | chr4.4:14583090-14583109 | MS.gene08939:intron | 45.0% | |
| TTGACTCCTTAACCAGTGTC+CGG | - | chr4.4:14584181-14584200 | MS.gene08939:intron | 45.0% | |
| ! | CCTTTGGTAACTTAAGGGCA+AGG | + | chr4.4:14582741-14582760 | None:intergenic | 45.0% |
| ! | TTGTTGCACTGGTGTCAAAG+AGG | - | chr4.4:14582633-14582652 | MS.gene08939:intron | 45.0% |
| !! | GTAGATTTTAACCAGTGCCC+CGG | - | chr4.4:14584052-14584071 | MS.gene08939:intron | 45.0% |
| !! | GTCAGATATTCTGGGACGAA+GGG | + | chr4.4:14583355-14583374 | None:intergenic | 45.0% |
| !! | TAGATTTTAACCAGTGCCCC+GGG | - | chr4.4:14584053-14584072 | MS.gene08939:intron | 45.0% |
| !!! | CATATTTTATTAAAATATTT+AGG | - | chr4.4:14583823-14583842 | MS.gene08939:intron | 5.0% |
| AAAGAGGTGGCTCTTGGTAG+AGG | - | chr4.4:14584652-14584671 | MS.gene08939:CDS | 50.0% | |
| ATTGCAGCTAGTGGTACCAC+TGG | - | chr4.4:14584581-14584600 | MS.gene08939:CDS | 50.0% | |
| CGGTGCATTCTGCTTTGTCT+TGG | + | chr4.4:14582546-14582565 | None:intergenic | 50.0% | |
| GCTCAGATAAATTGGGACGG+AGG | - | chr4.4:14583557-14583576 | MS.gene08939:intron | 50.0% | |
| GGAAATGTTAACCAGTGCCC+CGG | + | chr4.4:14584203-14584222 | None:intergenic | 50.0% | |
| GTTAATCGAGCTGCCCTTAC+TGG | - | chr4.4:14583276-14583295 | MS.gene08939:intron | 50.0% | |
| TGACTCCTTAACCAGTGTCC+GGG | - | chr4.4:14584182-14584201 | MS.gene08939:intron | 50.0% | |
| TTGTGGAAAGAGGTGGCTCT+TGG | - | chr4.4:14584646-14584665 | MS.gene08939:CDS | 50.0% | |
| !! | AGATTTTAACCAGTGCCCCG+GGG | - | chr4.4:14584054-14584073 | MS.gene08939:intron | 50.0% |
| !! | CTCTTGGTAGAGGTGCTTTG+TGG | - | chr4.4:14584662-14584681 | MS.gene08939:CDS | 50.0% |
| !! | GGTCAGATATTCTGGGACGA+AGG | + | chr4.4:14583356-14583375 | None:intergenic | 50.0% |
| ATTCCTTAACCAGTGCCCCG+GGG | + | chr4.4:14584072-14584091 | None:intergenic | 55.0% | |
| GACTCCTTAACCAGTGTCCG+GGG | - | chr4.4:14584183-14584202 | MS.gene08939:intron | 55.0% | |
| GATTCCTTAACCAGTGCCCC+GGG | + | chr4.4:14584073-14584092 | None:intergenic | 55.0% | |
| GCTCAAGACAAGAACGGTGG+CGG | - | chr4.4:14584623-14584642 | MS.gene08939:CDS | 55.0% | |
| GGATTCCTTAACCAGTGCCC+CGG | + | chr4.4:14584074-14584093 | None:intergenic | 55.0% | |
| TTTACCTGGAGGAACTGCGG+TGG | + | chr4.4:14582970-14582989 | None:intergenic | 55.0% | |
| ACTTCCACCGCAGTTCCTCC+AGG | - | chr4.4:14582963-14582982 | MS.gene08939:intron | 60.0% | |
| GTGGCGGTTGTGGAAAGAGG+TGG | - | chr4.4:14584639-14584658 | MS.gene08939:CDS | 60.0% | |
| TTAACCAGTGCCCCGGACAC+TGG | + | chr4.4:14584196-14584215 | None:intergenic | 60.0% | |
| TTAACCAGTGTCCGGGGCAC+TGG | - | chr4.4:14584189-14584208 | MS.gene08939:intron | 60.0% | |
| ! | ACGGTGGCGGTTGTGGAAAG+AGG | - | chr4.4:14584636-14584655 | MS.gene08939:CDS | 60.0% |
| ! | AGTGCCCCGGACACTGGTTA+AGG | + | chr4.4:14584190-14584209 | None:intergenic | 60.0% |
| ! | GACAAGAACGGTGGCGGTTG+TGG | - | chr4.4:14584629-14584648 | MS.gene08939:CDS | 60.0% |
| TAACCAGTGCCCCGGGGCAC+TGG | - | chr4.4:14584060-14584079 | MS.gene08939:intron | 70.0% | |
| TAACCAGTGCCCCGGGGCAC+TGG | + | chr4.4:14584079-14584060 | None:intergenic | 70.0% | |
| !! | GTGCCCCGGGGCACTGGTTA+AGG | - | chr4.4:14584066-14584085 | MS.gene08939:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 14582454 | 14584727 | 14582454 | ID=MS.gene08939 |
| chr4.4 | mRNA | 14582454 | 14584727 | 14582454 | ID=MS.gene08939.t1;Parent=MS.gene08939 |
| chr4.4 | exon | 14584385 | 14584727 | 14584385 | ID=MS.gene08939.t1.exon1;Parent=MS.gene08939.t1 |
| chr4.4 | CDS | 14584385 | 14584727 | 14584385 | ID=cds.MS.gene08939.t1;Parent=MS.gene08939.t1 |
| chr4.4 | exon | 14584197 | 14584292 | 14584197 | ID=MS.gene08939.t1.exon2;Parent=MS.gene08939.t1 |
| chr4.4 | CDS | 14584197 | 14584292 | 14584197 | ID=cds.MS.gene08939.t1;Parent=MS.gene08939.t1 |
| chr4.4 | exon | 14582454 | 14582593 | 14582454 | ID=MS.gene08939.t1.exon3;Parent=MS.gene08939.t1 |
| chr4.4 | CDS | 14582454 | 14582593 | 14582454 | ID=cds.MS.gene08939.t1;Parent=MS.gene08939.t1 |
| Gene Sequence |
| Protein sequence |
