AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050406


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050406.t1 MTR_7g109520 94.565 92 4 1 1 91 1 92 1.88e-58 177
MS.gene050406.t1 MTR_1g087030 53.191 94 39 3 2 91 3 95 3.57e-24 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050406.t1 AT3G62410 47.872 94 43 4 1 90 1 92 4.67e-19 77.4
MS.gene050406.t1 AT2G47400 56.897 58 23 1 33 90 30 85 8.66e-15 66.2

Find 0 sgRNAs with CRISPR-Local

Find 39 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
ACCAGAACAGATATCAAAGA+AGG + 51828:768-787 MS.gene050406:CDS 35.0%
ACCTTCTTTGATATCTGTTC+TGG - 51828:772-791 None:intergenic 35.0%
AAGCTTCTCTTCAACTCATC+AGG + 51828:643-662 MS.gene050406:CDS 40.0%
GAAGAAGGATTCTGATCCAT+TGG + 51828:911-930 MS.gene050406:CDS 40.0%
TCCATTGGAGGATTACTGTA+AGG + 51828:926-945 MS.gene050406:CDS 40.0%
TCCTTACAGTAATCCTCCAA+TGG - 51828:930-949 None:intergenic 40.0%
! ATGAGTTGAAGAGAAGCTTG+GGG - 51828:642-661 None:intergenic 40.0%
! GATGAGTTGAAGAGAAGCTT+GGG - 51828:643-662 None:intergenic 40.0%
! TGATGAGTTGAAGAGAAGCT+TGG - 51828:644-663 None:intergenic 40.0%
! TGTTGTTGGTGAGATCTTGA+TGG - 51828:680-699 None:intergenic 40.0%
! TTTTGCACTCATCAGTCTCA+GGG - 51828:956-975 None:intergenic 40.0%
AGAGAAGCTTGGGGTTTGAA+AGG - 51828:633-652 None:intergenic 45.0%
GAAGGATTCTGATCCATTGG+AGG + 51828:914-933 MS.gene050406:CDS 45.0%
TCATGCAAGGGATAGGAAGA+AGG + 51828:896-915 MS.gene050406:CDS 45.0%
! GGTGAGATCTTGATGGTTTG+TGG - 51828:673-692 None:intergenic 45.0%
! GTTTTGCACTCATCAGTCTC+AGG - 51828:957-976 None:intergenic 45.0%
AAGTGAGGAACTCAGTGCTG+CGG + 51828:869-888 MS.gene050406:CDS 50.0%
CAACAACACCACTGCAGACA+CGG + 51828:692-711 MS.gene050406:CDS 50.0%
CACCATCATTCGACCTGATC+CGG - 51828:728-747 None:intergenic 50.0%
CTACGCATTCTCCACTAACC+GGG - 51828:837-856 None:intergenic 50.0%
GCTACGCATTCTCCACTAAC+CGG - 51828:838-857 None:intergenic 50.0%
TAGCAGCATGGGATGAAGTG+AGG + 51828:854-873 MS.gene050406:CDS 50.0%
TGGAGAATGCGTAGCAGCAT+GGG + 51828:843-862 MS.gene050406:CDS 50.0%
! AGAGACATGTGCTGATGACC+CGG + 51828:816-835 MS.gene050406:CDS 50.0%
AACACCACTGCAGACACGGT+GGG + 51828:696-715 MS.gene050406:CDS 55.0%
AGCCGGATCAGGTCGAATGA+TGG + 51828:723-742 MS.gene050406:CDS 55.0%
CGGATCAGGTCGAATGATGG+TGG + 51828:726-745 MS.gene050406:CDS 55.0%
GTGGAGAATGCGTAGCAGCA+TGG + 51828:842-861 MS.gene050406:CDS 55.0%
TGTTCTGGTGCAGCACGAAC+TGG - 51828:757-776 None:intergenic 55.0%
! TGTGCTGATGACCCGGTTAG+TGG + 51828:823-842 MS.gene050406:CDS 55.0%
!! CGTGTCTGCAGTGGTGTTGT+TGG - 51828:694-713 None:intergenic 55.0%
ACACCACTGCAGACACGGTG+GGG + 51828:697-716 MS.gene050406:CDS 60.0%
CAACACCACTGCAGACACGG+TGG + 51828:695-714 MS.gene050406:CDS 60.0%
CGGCGAGTCATGCAAGGGAT+AGG + 51828:889-908 MS.gene050406:CDS 60.0%
TGCTGCGGCGAGTCATGCAA+GGG + 51828:884-903 MS.gene050406:CDS 60.0%
ACACCCCACCGTGTCTGCAG+TGG - 51828:703-722 None:intergenic 65.0%
CAGACACGGTGGGGTGTAGC+CGG + 51828:706-725 MS.gene050406:CDS 65.0%
GTGCTGCGGCGAGTCATGCA+AGG + 51828:883-902 MS.gene050406:CDS 65.0%
CGGTGGGGTGTAGCCGGATC+AGG + 51828:712-731 MS.gene050406:CDS 70.0%


Chromosome Type Strat End Strand Name
51828 gene 607 996 607 ID=MS.gene050406
51828 mRNA 607 996 607 ID=MS.gene050406.t1;Parent=MS.gene050406
51828 exon 607 996 607 ID=MS.gene050406.t1.exon1;Parent=MS.gene050406.t1
51828 CDS 607 996 607 ID=cds.MS.gene050406.t1;Parent=MS.gene050406.t1
Gene Sequence

>MS.gene050406

ATGGCAACAATAGGTGGTCTCAGCCTTTCAAACCCCAAGCTTCTCTTCAACTCATCAGGATTTCCACAAACCATCAAGATCTCACCAACAACACCACTGCAGACACGGTGGGGTGTAGCCGGATCAGGTCGAATGATGGTGGTTCGACCAGTTCGTGCTGCACCAGAACAGATATCAAAGAAGGTAGAAGAAAGCATTAAGAGTGCGCAAGAGACATGTGCTGATGACCCGGTTAGTGGAGAATGCGTAGCAGCATGGGATGAAGTGAGGAACTCAGTGCTGCGGCGAGTCATGCAAGGGATAGGAAGAAGGATTCTGATCCATTGGAGGATTACTGTAAGGATAACCCTGAGACTGATGAGTGCAAAACTTATGATAACTGATTTATGA

Protein sequence

>MS.gene050406.t1

MATIGGLSLSNPKLLFNSSGFPQTIKISPTTPLQTRWGVAGSGRMMVVRPVRAAPEQISKKVEESIKSAQETCADDPVSGECVAAWDEVRNSVLRRVMQGIGRRILIHWRITVRITLRLMSAKLMITDL