Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09078.t1 | RHN42616.1 | 100 | 1117 | 0 | 0 | 1 | 1117 | 1 | 1117 | 0.00E+00 | 2082.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09078.t1 | Q8BKC5 | 35.2 | 1108 | 670 | 15 | 30 | 1117 | 17 | 1096 | 5.0e-178 | 626.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09078.t1 | A0A396GNB0 | 100.0 | 1117 | 0 | 0 | 1 | 1117 | 1 | 1117 | 0.0e+00 | 2082.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049180 | MS.gene09078 | 0.87481 | 5.05E-68 | -1.69E-46 |
| MS.gene049209 | MS.gene09078 | 0.849536 | 3.04E-60 | -1.69E-46 |
| MS.gene050817 | MS.gene09078 | 0.823735 | 1.18E-53 | -1.69E-46 |
| MS.gene050818 | MS.gene09078 | 0.805345 | 1.40E-49 | -1.69E-46 |
| MS.gene050894 | MS.gene09078 | 0.807423 | 5.09E-50 | -1.69E-46 |
| MS.gene051020 | MS.gene09078 | 0.800777 | 1.23E-48 | -1.69E-46 |
| MS.gene052678 | MS.gene09078 | 0.818854 | 1.58E-52 | -1.69E-46 |
| MS.gene053278 | MS.gene09078 | 0.801997 | 6.91E-49 | -1.69E-46 |
| MS.gene054585 | MS.gene09078 | 0.859196 | 4.89E-63 | -1.69E-46 |
| MS.gene058404 | MS.gene09078 | 0.809336 | 1.99E-50 | -1.69E-46 |
| MS.gene060077 | MS.gene09078 | 0.830144 | 3.47E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09078.t1 | MTR_8g085950 | 99.821 | 1117 | 2 | 0 | 1 | 1117 | 1 | 1117 | 0.0 | 2292 |
| MS.gene09078.t1 | MTR_7g085820 | 80.054 | 1113 | 217 | 3 | 9 | 1117 | 7 | 1118 | 0.0 | 1807 |
| MS.gene09078.t1 | MTR_2g006750 | 26.518 | 1120 | 714 | 34 | 24 | 1114 | 5 | 1044 | 2.40e-96 | 330 |
| MS.gene09078.t1 | MTR_3g064980 | 25.143 | 1046 | 724 | 22 | 55 | 1086 | 113 | 1113 | 4.16e-78 | 280 |
| MS.gene09078.t1 | MTR_3g064930 | 26.762 | 979 | 641 | 29 | 54 | 1012 | 110 | 1032 | 1.11e-75 | 271 |
| MS.gene09078.t1 | MTR_3g064910 | 30.035 | 576 | 363 | 15 | 7 | 550 | 8 | 575 | 5.41e-59 | 218 |
| MS.gene09078.t1 | MTR_3g064910 | 45.455 | 231 | 124 | 1 | 887 | 1117 | 533 | 761 | 2.68e-58 | 216 |
| MS.gene09078.t1 | MTR_3g065010 | 25.534 | 936 | 571 | 28 | 7 | 908 | 76 | 919 | 5.59e-50 | 192 |
| MS.gene09078.t1 | MTR_3g064940 | 24.259 | 911 | 612 | 24 | 27 | 908 | 64 | 925 | 3.20e-49 | 190 |
| MS.gene09078.t1 | MTR_7g098920 | 51.613 | 124 | 26 | 3 | 892 | 1011 | 6 | 99 | 4.98e-27 | 107 |
| MS.gene09078.t1 | MTR_3g064935 | 41.837 | 98 | 56 | 1 | 989 | 1086 | 38 | 134 | 7.59e-19 | 84.7 |
| MS.gene09078.t1 | MTR_8g099855 | 34.667 | 150 | 80 | 3 | 938 | 1086 | 252 | 384 | 1.17e-18 | 90.1 |
| MS.gene09078.t1 | MTR_8g099785 | 21.209 | 844 | 542 | 31 | 39 | 813 | 20 | 809 | 1.77e-15 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09078.t1 | AT5G19820 | 81.558 | 1117 | 205 | 1 | 1 | 1117 | 1 | 1116 | 0.0 | 1885 |
| MS.gene09078.t1 | AT4G27640 | 25.275 | 1092 | 735 | 28 | 24 | 1094 | 5 | 1036 | 2.80e-87 | 305 |
Find 256 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAATACCGCTACTATTT+TGG | 0.031192 | 4.4:+14116792 | None:intergenic |
| CAATTGTCCAATTGCATTAA+TGG | 0.133282 | 4.4:+14124524 | None:intergenic |
| CCTCGTGGAAATAAAATTTA+AGG | 0.186312 | 4.4:+14120392 | None:intergenic |
| TCATATGCCATTACATTATC+TGG | 0.189146 | 4.4:+14117264 | None:intergenic |
| CTCGGTGTTTGTGCTGAGTT+TGG | 0.199189 | 4.4:-14117440 | MS.gene09078:CDS |
| TGAACAATTACCTGCGTATT+TGG | 0.203462 | 4.4:-14124821 | MS.gene09078:CDS |
| CTCAATCAAATCACCTTTAA+TGG | 0.208670 | 4.4:+14116971 | None:intergenic |
| TGGACAATTGTCTACTGATT+TGG | 0.219251 | 4.4:-14124511 | MS.gene09078:CDS |
| TGACAGCATCATAATATTTC+TGG | 0.220680 | 4.4:+14122047 | None:intergenic |
| CTGTCGGAAAGGAGAAATTT+AGG | 0.230051 | 4.4:-14121928 | MS.gene09078:CDS |
| CGCCGATAGAGATAGGTTTC+AGG | 0.232336 | 4.4:-14125301 | MS.gene09078:CDS |
| GTTAGAAAAGCTGCCGTTTC+AGG | 0.232754 | 4.4:-14120367 | MS.gene09078:intron |
| TTGGGAAGGTATTGATTGTT+TGG | 0.242619 | 4.4:+14116811 | None:intergenic |
| CAAATTGCTTGTACTTCTTC+AGG | 0.252482 | 4.4:-14122341 | MS.gene09078:intron |
| GGCTAGACTCTGCAAGTGTC+TGG | 0.264832 | 4.4:-14121102 | MS.gene09078:CDS |
| CTATCAGGTGGGCGAGATAT+TGG | 0.266277 | 4.4:-14118647 | MS.gene09078:intron |
| ACAGATCTCCGGGATGCTTT+TGG | 0.283742 | 4.4:-14118944 | MS.gene09078:intron |
| CAATACTGTCCTGGTGAAAT+TGG | 0.284416 | 4.4:+14117211 | None:intergenic |
| TTGACGGAGGCGTTGAATTC+AGG | 0.293964 | 4.4:-14125252 | MS.gene09078:CDS |
| GGATAGGTTATCGATATCTT+TGG | 0.294948 | 4.4:-14124872 | MS.gene09078:CDS |
| TCGGTGTTTGTGCTGAGTTT+GGG | 0.303824 | 4.4:-14117439 | MS.gene09078:CDS |
| TTCAGTAAATGAATGCTTAC+AGG | 0.307262 | 4.4:-14119747 | MS.gene09078:intron |
| CTAACTATTCCATCCAAGTA+TGG | 0.308374 | 4.4:+14122364 | None:intergenic |
| AACATAAACGGAAGCAATTC+AGG | 0.309427 | 4.4:+14125537 | None:intergenic |
| TATTCTGATGAAGATGCTTT+TGG | 0.313367 | 4.4:-14124986 | MS.gene09078:CDS |
| AAGTATGGCGTTAAAATTTC+AGG | 0.313954 | 4.4:+14122379 | None:intergenic |
| TCACCTGTACGCGGGGATTC+TGG | 0.316888 | 4.4:+14124421 | None:intergenic |
| GGACAATTGTCTACTGATTT+GGG | 0.318866 | 4.4:-14124510 | MS.gene09078:CDS |
| ATTGCGATCCTTCTCTCTTC+AGG | 0.323866 | 4.4:+14117787 | None:intergenic |
| GCTCAATTGTCGCAGTATAT+TGG | 0.327463 | 4.4:-14125459 | MS.gene09078:CDS |
| CATGCTTCGTGCTAAGTCTA+TGG | 0.334668 | 4.4:-14121975 | MS.gene09078:CDS |
| TCACGATCAACTTTGTTCTA+TGG | 0.339301 | 4.4:-14116937 | MS.gene09078:CDS |
| TTGAACTGTCTGCCCATTAA+AGG | 0.352539 | 4.4:-14116984 | MS.gene09078:CDS |
| GGCATGACAAATTCCATATA+AGG | 0.363015 | 4.4:+14121065 | None:intergenic |
| TGGGAAGGTATTGATTGTTT+GGG | 0.363550 | 4.4:+14116812 | None:intergenic |
| GATAGGTTATCGATATCTTT+GGG | 0.368820 | 4.4:-14124871 | MS.gene09078:CDS |
| GCTGCATTTGCAGGTAGTTC+CGG | 0.371697 | 4.4:-14117012 | MS.gene09078:intron |
| TACGTATCTTCCATTCTTGT+TGG | 0.374595 | 4.4:-14117613 | MS.gene09078:CDS |
| TCTGTGTTCAAACCTCTTGT+TGG | 0.375892 | 4.4:-14117413 | MS.gene09078:CDS |
| TGCAATGCTTCCACCAAAGC+TGG | 0.377656 | 4.4:+14120131 | None:intergenic |
| TATCAGGTGGGCGAGATATT+GGG | 0.378338 | 4.4:-14118646 | MS.gene09078:intron |
| TGGAATCAAGACTAGTGTTC+TGG | 0.380110 | 4.4:-14120621 | MS.gene09078:CDS |
| AGAGGGAGCCTTGACTGCTT+TGG | 0.381283 | 4.4:-14122181 | MS.gene09078:CDS |
| GTCTATGGAATGCATAAGTT+TGG | 0.383864 | 4.4:-14121960 | MS.gene09078:CDS |
| TTTCTGCAGGCAGCGGTATA+CGG | 0.384330 | 4.4:-14117464 | MS.gene09078:intron |
| TAGGTTTCAGGATTTGTTAC+CGG | 0.385158 | 4.4:-14125289 | MS.gene09078:CDS |
| TCCCAACTCGCGGCGATTCT+CGG | 0.388817 | 4.4:-14125930 | MS.gene09078:CDS |
| AGCTTCAAAACGAGTGCGTC+TGG | 0.389041 | 4.4:+14125801 | None:intergenic |
| TGCGGAGGCCGAGTCTTTAG+AGG | 0.392146 | 4.4:-14125118 | MS.gene09078:CDS |
| ACTCTCGGTGACAAAAGAAT+TGG | 0.392745 | 4.4:-14120641 | MS.gene09078:CDS |
| CTTGCACAAATTTCTGTGTC+AGG | 0.397759 | 4.4:+14119779 | None:intergenic |
| AGAGGAAGGGACTAGGCATT+TGG | 0.398444 | 4.4:-14125100 | MS.gene09078:CDS |
| TTATCTGGATGAAGCGCATT+AGG | 0.403617 | 4.4:+14117279 | None:intergenic |
| AGGTCCGACAGCTCTCTCTT+AGG | 0.406373 | 4.4:-14116835 | MS.gene09078:CDS |
| CGCCGAGAATCGCCGCGAGT+TGG | 0.410430 | 4.4:+14125928 | None:intergenic |
| AGGCAGATTGTTGATGTTGT+TGG | 0.410996 | 4.4:-14125156 | MS.gene09078:CDS |
| CATTGACCAATATAGCCTTC+AGG | 0.412023 | 4.4:+14122017 | None:intergenic |
| TGATATTGAACTTGCAAATC+CGG | 0.412982 | 4.4:+14124486 | None:intergenic |
| CAGCTGTTTGTTCTGTTGCA+AGG | 0.416156 | 4.4:+14116029 | None:intergenic |
| TAGCAGGCGGTAATGTTTGC+TGG | 0.418065 | 4.4:+14115978 | None:intergenic |
| GCCGAGAATCGCCGCGAGTT+GGG | 0.420121 | 4.4:+14125929 | None:intergenic |
| TGGGCAGCCATTAATGCAAT+TGG | 0.420671 | 4.4:-14124531 | MS.gene09078:CDS |
| CTATGTCCGCTATTCTTCTT+CGG | 0.421823 | 4.4:-14125737 | MS.gene09078:CDS |
| AATAGTTGAAGAGGTAAAAC+AGG | 0.425292 | 4.4:-14118902 | MS.gene09078:CDS |
| AGCATCAAAATCTTCAGCTT+GGG | 0.426942 | 4.4:+14118834 | None:intergenic |
| TGACAATGCAGTTTCTGCTC+TGG | 0.428092 | 4.4:-14117244 | MS.gene09078:CDS |
| AGATGCCGCAGTTTATTAGT+AGG | 0.433330 | 4.4:-14125017 | MS.gene09078:CDS |
| AATTCAGGCCAACCGTTATC+CGG | 0.434247 | 4.4:+14125552 | None:intergenic |
| TCAATCAAATCACCTTTAAT+GGG | 0.436293 | 4.4:+14116972 | None:intergenic |
| ACCGTACCTGAAGGCTATAT+TGG | 0.437750 | 4.4:-14122023 | MS.gene09078:CDS |
| CTGGTTCCGCCGATAGAGAT+AGG | 0.441094 | 4.4:-14125308 | MS.gene09078:CDS |
| TAGTGTTGGACAGGAGTGTT+TGG | 0.441465 | 4.4:-14124893 | MS.gene09078:CDS |
| CGCGTGATGATTCATTCCTC+TGG | 0.442926 | 4.4:-14125704 | MS.gene09078:CDS |
| ATTCTTTCCATGGATTGATC+AGG | 0.444124 | 4.4:-14120540 | MS.gene09078:intron |
| GCCAGCCCTAGCTGCTGCCA+TGG | 0.444572 | 4.4:-14124451 | MS.gene09078:CDS |
| AGGCAAGAAGGATGCTTTGA+AGG | 0.444588 | 4.4:+14118609 | None:intergenic |
| AAAGCAGCAATTCTGACATC+AGG | 0.445785 | 4.4:+14125363 | None:intergenic |
| TGTCGGAAAGGAGAAATTTA+GGG | 0.446376 | 4.4:-14121927 | MS.gene09078:CDS |
| GTGTTCAAACCTCTTGTTGG+AGG | 0.452256 | 4.4:-14117410 | MS.gene09078:intron |
| TCAGTGCGTTTCGTCTGATT+CGG | 0.452441 | 4.4:-14125514 | MS.gene09078:CDS |
| CATCTTATTTGACTCCTATG+TGG | 0.455513 | 4.4:-14118570 | MS.gene09078:CDS |
| GATGCAGGTTGCAGGAACTT+TGG | 0.456597 | 4.4:-14120422 | MS.gene09078:intron |
| CAGCATCAAAATCTTCAGCT+TGG | 0.459418 | 4.4:+14118833 | None:intergenic |
| GGCTTGAGAACGTTCTTCGT+TGG | 0.461472 | 4.4:+14125857 | None:intergenic |
| TCGAGTATATTGCCGGATAA+CGG | 0.462401 | 4.4:-14125564 | MS.gene09078:CDS |
| CAGGTGGAAGCAAGGGTAGC+AGG | 0.463259 | 4.4:+14115962 | None:intergenic |
| TTGAGATTGCCCTTTCTCAA+TGG | 0.464568 | 4.4:+14120199 | None:intergenic |
| ATTTAGGGCTGATGCTAAGC+AGG | 0.466706 | 4.4:-14121912 | MS.gene09078:intron |
| TGACAGTATCATCCCAGCTT+TGG | 0.467023 | 4.4:-14120144 | MS.gene09078:CDS |
| CTGCTACCCTTGCTTCCACC+TGG | 0.467347 | 4.4:-14115961 | MS.gene09078:CDS |
| ATTGTCTACTGATTTGGGTC+CGG | 0.467478 | 4.4:-14124505 | MS.gene09078:CDS |
| GAGTTGCTTATTGAGCTTGC+GGG | 0.467677 | 4.4:-14125201 | MS.gene09078:CDS |
| GTATCTTCCATTCTTGTTGG+AGG | 0.470358 | 4.4:-14117610 | MS.gene09078:CDS |
| ATGCTAACCTGTCTAACATC+TGG | 0.474453 | 4.4:+14117570 | None:intergenic |
| TGAAAGAAGGATTCTTTCCA+TGG | 0.475708 | 4.4:-14120550 | MS.gene09078:CDS |
| TGTAGCATGTAACTTGTTGT+TGG | 0.478385 | 4.4:+14121216 | None:intergenic |
| GATGACAATTCTTCAAAGAA+AGG | 0.480654 | 4.4:+14118589 | None:intergenic |
| AGAAATTTGTGCAAGTATGT+TGG | 0.481433 | 4.4:-14119771 | MS.gene09078:CDS |
| TGATTACTCTTGCTGAAGCT+AGG | 0.483939 | 4.4:-14125065 | MS.gene09078:CDS |
| ATCTTATTTGACTCCTATGT+GGG | 0.485888 | 4.4:-14118569 | MS.gene09078:intron |
| GAAGCTAGGGAGCGTGCTCC+TGG | 0.485994 | 4.4:-14125051 | MS.gene09078:CDS |
| GCAAAGTTAGCCATTGAGAA+AGG | 0.486249 | 4.4:-14120209 | MS.gene09078:CDS |
| CTGATCAACATCCTCGTGTA+AGG | 0.486407 | 4.4:-14124554 | MS.gene09078:CDS |
| GTCCTTGCAAGGATCACAAA+TGG | 0.486615 | 4.4:-14121250 | MS.gene09078:CDS |
| GCAGAGGTTGAAGAGAGCTT+CGG | 0.487032 | 4.4:+14125836 | None:intergenic |
| ACTCGCTTCGAGTATATTGC+CGG | 0.487730 | 4.4:-14125571 | MS.gene09078:CDS |
| CAATATCTCTATAGCAATGC+CGG | 0.488186 | 4.4:-14120246 | MS.gene09078:intron |
| TTGTTGTAGCTGAGTTGACT+CGG | 0.488846 | 4.4:+14125953 | None:intergenic |
| TTTGAGAGAAGCTTGAGTGT+TGG | 0.490223 | 4.4:+14125668 | None:intergenic |
| GACTACCTTTGAGCTTCCCT+CGG | 0.492890 | 4.4:+14124744 | None:intergenic |
| CAGGCAGCGGTATACGGCCT+CGG | 0.494617 | 4.4:-14117458 | MS.gene09078:CDS |
| GAATCCTTCTTTCAACTCAT+CGG | 0.496573 | 4.4:+14120559 | None:intergenic |
| TTGCAAGTTCAATATCATCA+AGG | 0.497804 | 4.4:-14124480 | MS.gene09078:CDS |
| TTTAGAGCAAGTGGTGGCTA+TGG | 0.499528 | 4.4:-14124592 | MS.gene09078:CDS |
| TTACATGCCTCCAACAAGAA+TGG | 0.499838 | 4.4:+14117603 | None:intergenic |
| GTCTGAGTAAACTAACCATT+CGG | 0.499941 | 4.4:+14116005 | None:intergenic |
| ATCAGTTGCTGATTCATCTC+AGG | 0.501257 | 4.4:-14122157 | MS.gene09078:intron |
| ATCATCCATGGCAGCAGCTA+GGG | 0.501960 | 4.4:+14124446 | None:intergenic |
| ATTTCAGAATGGTAAACAAA+TGG | 0.503330 | 4.4:-14122208 | MS.gene09078:intron |
| CAGTATCATCCCAGCTTTGG+TGG | 0.504748 | 4.4:-14120141 | MS.gene09078:CDS |
| ATGGAATGCATAAGTTTGGT+TGG | 0.505162 | 4.4:-14121956 | MS.gene09078:CDS |
| TCCATGGCAGCAGCTAGGGC+TGG | 0.505867 | 4.4:+14124450 | None:intergenic |
| TTTGGTGGAAGCATTGCATA+AGG | 0.506410 | 4.4:-14120126 | MS.gene09078:intron |
| GTCAACGTCGTCATCATAGC+CGG | 0.507512 | 4.4:+14125270 | None:intergenic |
| ACTATGCAAACTATGAAGAA+AGG | 0.510590 | 4.4:+14115897 | None:intergenic |
| GCTAGACTCTGCAAGTGTCT+GGG | 0.510865 | 4.4:-14121101 | MS.gene09078:CDS |
| GACAATGCAGTTTCTGCTCT+GGG | 0.511023 | 4.4:-14117243 | MS.gene09078:CDS |
| CGGTGTTTGTGCTGAGTTTG+GGG | 0.513048 | 4.4:-14117438 | MS.gene09078:CDS |
| CATTAAAGGTGATTTGATTG+AGG | 0.514731 | 4.4:-14116970 | MS.gene09078:CDS |
| GATGAAGCGCATTAGGATGT+TGG | 0.515875 | 4.4:+14117286 | None:intergenic |
| CTGGATCGGTTTGTTTGCAG+AGG | 0.518770 | 4.4:+14125820 | None:intergenic |
| TATGCCGATGAGTTGAAAGA+AGG | 0.518825 | 4.4:-14120563 | MS.gene09078:CDS |
| AACAACAAGTTACATGCTAC+AGG | 0.519395 | 4.4:-14121214 | MS.gene09078:intron |
| GGTAATTGTTCAGAAGCAAC+AGG | 0.520537 | 4.4:+14124832 | None:intergenic |
| ACCTGCGTATTTGGCTGCAC+CGG | 0.521180 | 4.4:-14124812 | MS.gene09078:CDS |
| CTTACACGAGGATGTTGATC+AGG | 0.522287 | 4.4:+14124555 | None:intergenic |
| CAAAACGAGTGCGTCTGGAT+CGG | 0.522767 | 4.4:+14125806 | None:intergenic |
| GAAAGGGCAATCTCAAGGTC+GGG | 0.523223 | 4.4:-14120192 | MS.gene09078:CDS |
| GAAACGCACTGAAACATAAA+CGG | 0.523550 | 4.4:+14125525 | None:intergenic |
| AGTCTTTAGAGGAAGGGACT+AGG | 0.523834 | 4.4:-14125107 | MS.gene09078:CDS |
| GATCATTCTCATACCTGAAA+CGG | 0.524594 | 4.4:+14120354 | None:intergenic |
| TTTCCAGAATCCCCGCGTAC+AGG | 0.525098 | 4.4:-14124424 | MS.gene09078:intron |
| TTGAGAACGTTCTTCGTTGG+TGG | 0.527614 | 4.4:+14125860 | None:intergenic |
| CTCCATTTGTGATCCTTGCA+AGG | 0.529100 | 4.4:+14121248 | None:intergenic |
| ATCAGAGTCTCAAACGGTGA+TGG | 0.529863 | 4.4:+14125900 | None:intergenic |
| TAGCAACTATAGTGTTGGAC+AGG | 0.533245 | 4.4:-14124902 | MS.gene09078:CDS |
| AATCATCCATGGCAGCAGCT+AGG | 0.533390 | 4.4:+14124445 | None:intergenic |
| AGCTTGCGGGGACTGAGCCT+AGG | 0.534258 | 4.4:-14125188 | MS.gene09078:CDS |
| AACTGATGCCAAAGCAGTCA+AGG | 0.535384 | 4.4:+14122173 | None:intergenic |
| TGCAAGTTCAATATCATCAA+GGG | 0.542378 | 4.4:-14124479 | MS.gene09078:CDS |
| CAAAGTTAGCCATTGAGAAA+GGG | 0.544023 | 4.4:-14120208 | MS.gene09078:CDS |
| GGCTATGATGACGACGTTGA+CGG | 0.545297 | 4.4:-14125268 | MS.gene09078:CDS |
| TCAAGAGGCGACTGCTCAAG+AGG | 0.545783 | 4.4:-14125229 | MS.gene09078:CDS |
| GGGCAGAGTCAATACTGTCC+TGG | 0.546727 | 4.4:+14117202 | None:intergenic |
| GATTACTCTTGCTGAAGCTA+GGG | 0.546767 | 4.4:-14125064 | MS.gene09078:CDS |
| GATAGCCGAGGGAAGCTCAA+AGG | 0.547363 | 4.4:-14124749 | MS.gene09078:intron |
| GGTCAAGTCAATAGTTGAAG+AGG | 0.548828 | 4.4:-14118911 | MS.gene09078:CDS |
| GGCAGACAGTTCAACCATGC+CGG | 0.549952 | 4.4:+14116993 | None:intergenic |
| TGAAACTCCAGATGTTAGAC+AGG | 0.551089 | 4.4:-14117577 | MS.gene09078:intron |
| TGCAAACTATGAAGAAAGGA+TGG | 0.552426 | 4.4:+14115901 | None:intergenic |
| ATCAACATCCTCGTGTAAGG+TGG | 0.552996 | 4.4:-14124551 | MS.gene09078:CDS |
| TGGAAATAAAATTTAAGGAG+TGG | 0.553423 | 4.4:+14120397 | None:intergenic |
| TTGGACAGGAGTGTTTGGAT+AGG | 0.553440 | 4.4:-14124888 | MS.gene09078:CDS |
| GTATCCGCAGTGTGCCATGC+GGG | 0.556387 | 4.4:+14124949 | None:intergenic |
| TTTGCAGATCGTAATAGCTC+CGG | 0.557132 | 4.4:+14120227 | None:intergenic |
| AGTCTCAAACGGTGATGGAT+CGG | 0.558898 | 4.4:+14125905 | None:intergenic |
| ATGCATAAGTTTGGTTGGAA+TGG | 0.560001 | 4.4:-14121951 | MS.gene09078:CDS |
| CGATCAACTTTGTTCTATGG+CGG | 0.561251 | 4.4:-14116934 | MS.gene09078:CDS |
| GGCATCTTCCTCATCATACC+AGG | 0.561763 | 4.4:+14125033 | None:intergenic |
| GAATCTAGCAACTATAGTGT+TGG | 0.562795 | 4.4:-14124907 | MS.gene09078:CDS |
| AAGATGACCAGGTGGAAGCA+AGG | 0.562842 | 4.4:+14115954 | None:intergenic |
| AGAAAGGGCAATCTCAAGGT+CGG | 0.564082 | 4.4:-14120193 | MS.gene09078:CDS |
| GAAGTTCTTATGTCCTTGCA+AGG | 0.564320 | 4.4:-14121261 | MS.gene09078:CDS |
| GCAGATGTGATGGTAACGTC+AGG | 0.566720 | 4.4:+14121014 | None:intergenic |
| GGTTGGAATGGCTGTCGGAA+AGG | 0.567317 | 4.4:-14121939 | MS.gene09078:CDS |
| TTCTTCAAAGAAAGGCAAGA+AGG | 0.569138 | 4.4:+14118597 | None:intergenic |
| TAGATGATTCTGATGATGAA+AGG | 0.572299 | 4.4:-14120974 | MS.gene09078:intron |
| TGAGTTGCTTATTGAGCTTG+CGG | 0.572615 | 4.4:-14125202 | MS.gene09078:CDS |
| ATTTGCAGGTAGTTCCGGCA+TGG | 0.573214 | 4.4:-14117007 | MS.gene09078:intron |
| AGTCTAACCTGATCAATCCA+TGG | 0.574932 | 4.4:+14120533 | None:intergenic |
| ATCCTGAAACCTATCTCTAT+CGG | 0.577427 | 4.4:+14125299 | None:intergenic |
| TGGTGCAATGCTTCAGATTG+CGG | 0.578390 | 4.4:-14125136 | MS.gene09078:CDS |
| GGCGTTGAATTCAGGTCAAG+AGG | 0.578897 | 4.4:-14125244 | MS.gene09078:CDS |
| AGATGACCAGGTGGAAGCAA+GGG | 0.581291 | 4.4:+14115955 | None:intergenic |
| GATTAAAGAGGAAAACGAGC+AGG | 0.581297 | 4.4:-14118797 | MS.gene09078:CDS |
| AGTTTGGTTGGAATGGCTGT+CGG | 0.582073 | 4.4:-14121944 | MS.gene09078:CDS |
| AGGAAAGCTCACCTGTACGC+GGG | 0.582531 | 4.4:+14124413 | None:intergenic |
| ACCAATATAGCCTTCAGGTA+CGG | 0.584658 | 4.4:+14122022 | None:intergenic |
| TGGTAAACAAATGGTGCAAG+AGG | 0.585953 | 4.4:-14122199 | MS.gene09078:CDS |
| ACGAGGATGTTGATCAGGAA+AGG | 0.589437 | 4.4:+14124560 | None:intergenic |
| GCAATGCTTCCACCAAAGCT+GGG | 0.591321 | 4.4:+14120132 | None:intergenic |
| CTAGACTCTGCAAGTGTCTG+GGG | 0.591446 | 4.4:-14121100 | MS.gene09078:CDS |
| GCTTCATCCAGATAATGTAA+TGG | 0.597429 | 4.4:-14117271 | MS.gene09078:CDS |
| TTGCGGCTGCAAAGATGACC+AGG | 0.597788 | 4.4:+14115943 | None:intergenic |
| ATTGAGAAAGGGCAATCTCA+AGG | 0.599282 | 4.4:-14120197 | MS.gene09078:CDS |
| ACAAGACTCCTGAAGAGAGA+AGG | 0.600764 | 4.4:-14117795 | MS.gene09078:CDS |
| TGTTGTAGCTGAGTTGACTC+GGG | 0.600878 | 4.4:+14125954 | None:intergenic |
| GAGGCCGAGTCTTTAGAGGA+AGG | 0.600961 | 4.4:-14125114 | MS.gene09078:CDS |
| TGTGAGATCAGAGTCTCAAA+CGG | 0.602992 | 4.4:+14125894 | None:intergenic |
| GTATATTGCCGGATAACGGT+TGG | 0.605698 | 4.4:-14125560 | MS.gene09078:CDS |
| AGTCCCTTCCTCTAAAGACT+CGG | 0.605757 | 4.4:+14125110 | None:intergenic |
| CTTGCAACAGAACAAACAGC+TGG | 0.607654 | 4.4:-14116028 | MS.gene09078:CDS |
| GAAGCAGACTGAAGCAATGG+TGG | 0.608511 | 4.4:+14121044 | None:intergenic |
| AACTTTGTTCTATGGCGGAG+AGG | 0.608912 | 4.4:-14116929 | MS.gene09078:intron |
| GGGATTCTGGAAATCATCCA+TGG | 0.611070 | 4.4:+14124434 | None:intergenic |
| AGGCCGAGTCTTTAGAGGAA+GGG | 0.611185 | 4.4:-14125113 | MS.gene09078:CDS |
| GGACAGTATTGACTCTGCCC+AGG | 0.611934 | 4.4:-14117199 | MS.gene09078:intron |
| CGTATTTGGCTGCACCGGAG+TGG | 0.613438 | 4.4:-14124807 | MS.gene09078:CDS |
| AGTATGGAAACTATCACTCT+CGG | 0.613971 | 4.4:-14120656 | MS.gene09078:CDS |
| TAAGCAGTACCTCCAACAAG+AGG | 0.616877 | 4.4:+14117401 | None:intergenic |
| AGAACAAACAGCTGGCCGAA+TGG | 0.617898 | 4.4:-14116020 | MS.gene09078:CDS |
| GATACTGAAGATGAGGATGC+TGG | 0.618679 | 4.4:-14124931 | MS.gene09078:CDS |
| GTCTGAATCAGCAGATGTGA+TGG | 0.620767 | 4.4:+14121004 | None:intergenic |
| AGTGAAGCAGACTGAAGCAA+TGG | 0.623414 | 4.4:+14121041 | None:intergenic |
| CACTGCGGATACTGAAGATG+AGG | 0.623501 | 4.4:-14124938 | MS.gene09078:CDS |
| TGGGCCTAAGAGAGAGCTGT+CGG | 0.625244 | 4.4:+14116831 | None:intergenic |
| TCAACATCCTCGTGTAAGGT+GGG | 0.625966 | 4.4:-14124550 | MS.gene09078:CDS |
| AATAGTAGCGGTATTTGCAG+AGG | 0.628250 | 4.4:-14116788 | MS.gene09078:intron |
| CTGAAACCTATCTCTATCGG+CGG | 0.629890 | 4.4:+14125302 | None:intergenic |
| AATCAAGACTAGTGTTCTGG+AGG | 0.630386 | 4.4:-14120618 | MS.gene09078:CDS |
| CAAGCGCAATCAATGCAGCA+TGG | 0.631444 | 4.4:+14124776 | None:intergenic |
| TGCAATGCTTCAGATTGCGG+AGG | 0.631976 | 4.4:-14125133 | MS.gene09078:CDS |
| TGCGCTTGCTCAGATAGCCG+AGG | 0.633942 | 4.4:-14124761 | MS.gene09078:CDS |
| TCCGGTGCAGCCAAATACGC+AGG | 0.640135 | 4.4:+14124811 | None:intergenic |
| TGCTGTCATACCGTACCTGA+AGG | 0.640419 | 4.4:-14122032 | MS.gene09078:CDS |
| TAAAGAGGAAAACGAGCAGG+AGG | 0.642022 | 4.4:-14118794 | MS.gene09078:CDS |
| GCAAGTTCAATATCATCAAG+GGG | 0.642471 | 4.4:-14124478 | MS.gene09078:CDS |
| GCGCTTGCTCAGATAGCCGA+GGG | 0.646139 | 4.4:-14124760 | MS.gene09078:CDS |
| CTGGACGAACATACCCACAT+AGG | 0.647072 | 4.4:+14118556 | None:intergenic |
| AGCGTGCTCCTGGTATGATG+AGG | 0.647250 | 4.4:-14125041 | MS.gene09078:CDS |
| ATAGCACGAGCTTCTTGATG+AGG | 0.650205 | 4.4:+14125756 | None:intergenic |
| AGTTGCTTATTGAGCTTGCG+GGG | 0.652193 | 4.4:-14125200 | MS.gene09078:CDS |
| TCATGAAGGTGTTTGATATG+CGG | 0.655511 | 4.4:+14125423 | None:intergenic |
| GGAAAGCTCACCTGTACGCG+GGG | 0.656730 | 4.4:+14124414 | None:intergenic |
| AAGGAAAGCTCACCTGTACG+CGG | 0.657388 | 4.4:+14124412 | None:intergenic |
| TAGACTTAGCACGAAGCATG+CGG | 0.663457 | 4.4:+14121978 | None:intergenic |
| GGTAAACAAATGGTGCAAGA+GGG | 0.663711 | 4.4:-14122198 | MS.gene09078:CDS |
| GTTGCAGAGCAGTGTCGTGA+AGG | 0.667612 | 4.4:-14117748 | MS.gene09078:CDS |
| AGTATCCGCAGTGTGCCATG+CGG | 0.668390 | 4.4:+14124948 | None:intergenic |
| AGGTTATCGATATCTTTGGG+AGG | 0.678521 | 4.4:-14124868 | MS.gene09078:CDS |
| ATACCTTCCCAAAATAGTAG+CGG | 0.684508 | 4.4:-14116800 | MS.gene09078:CDS |
| GGTGTTTGTGCTGAGTTTGG+GGG | 0.689686 | 4.4:-14117437 | MS.gene09078:CDS |
| TGTAAAGCAAGCTGTTGTTG+CGG | 0.689701 | 4.4:+14115926 | None:intergenic |
| TATGATGACGACGTTGACGG+AGG | 0.691858 | 4.4:-14125265 | MS.gene09078:CDS |
| TGGACGAAAGACGAGGCCAG+AGG | 0.697746 | 4.4:+14125688 | None:intergenic |
| CAAACTCAGCACAAACACCG+AGG | 0.699327 | 4.4:+14117441 | None:intergenic |
| ATATTGAGGATGATCCCGCA+TGG | 0.701405 | 4.4:-14124963 | MS.gene09078:CDS |
| TTGCTTCCGAAGAAGAATAG+CGG | 0.703185 | 4.4:+14125731 | None:intergenic |
| AACAACCTACTAATAAACTG+CGG | 0.712474 | 4.4:+14125012 | None:intergenic |
| GTGGAAGCAAGGGTAGCAGG+CGG | 0.721019 | 4.4:+14115965 | None:intergenic |
| CGGCTGCAAAGATGACCAGG+TGG | 0.721639 | 4.4:+14115946 | None:intergenic |
| CTTATGCAGAGGCTCTATCG+AGG | 0.722154 | 4.4:-14117323 | MS.gene09078:intron |
| ATGGCTGCCCACCTTACACG+AGG | 0.728704 | 4.4:+14124543 | None:intergenic |
| TGATCCCGCATGGCACACTG+CGG | 0.748655 | 4.4:-14124953 | MS.gene09078:CDS |
| TGAGTGTTGGACGAAAGACG+AGG | 0.753231 | 4.4:+14125681 | None:intergenic |
| GCTACAACAATCCCAACTCG+CGG | 0.761555 | 4.4:-14125940 | MS.gene09078:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 14115907 | 14125982 | 14115907 | ID=MS.gene09078 |
| chr4.4 | mRNA | 14115907 | 14125982 | 14115907 | ID=MS.gene09078.t1;Parent=MS.gene09078 |
| chr4.4 | exon | 14124750 | 14125982 | 14124750 | ID=MS.gene09078.t1.exon1;Parent=MS.gene09078.t1 |
| chr4.4 | CDS | 14124750 | 14125982 | 14124750 | ID=cds.MS.gene09078.t1;Parent=MS.gene09078.t1 |
| chr4.4 | exon | 14124425 | 14124628 | 14124425 | ID=MS.gene09078.t1.exon2;Parent=MS.gene09078.t1 |
| chr4.4 | CDS | 14124425 | 14124628 | 14124425 | ID=cds.MS.gene09078.t1;Parent=MS.gene09078.t1 |
| chr4.4 | exon | 14122342 | 14122446 | 14122342 | ID=MS.gene09078.t1.exon3;Parent=MS.gene09078.t1 |
| chr4.4 | CDS | 14122342 | 14122446 | 14122342 | ID=cds.MS.gene09078.t1;Parent=MS.gene09078.t1 |
| chr4.4 | exon | 14122158 | 14122223 | 14122158 | ID=MS.gene09078.t1.exon4;Parent=MS.gene09078.t1 |
| chr4.4 | CDS | 14122158 | 14122223 | 14122158 | ID=cds.MS.gene09078.t1;Parent=MS.gene09078.t1 |
| chr4.4 | exon | 14121913 | 14122077 | 14121913 | ID=MS.gene09078.t1.exon5;Parent=MS.gene09078.t1 |
| chr4.4 | CDS | 14121913 | 14122077 | 14121913 | ID=cds.MS.gene09078.t1;Parent=MS.gene09078.t1 |
| chr4.4 | exon | 14121215 | 14121289 | 14121215 | ID=MS.gene09078.t1.exon6;Parent=MS.gene09078.t1 |
| chr4.4 | CDS | 14121215 | 14121289 | 14121215 | ID=cds.MS.gene09078.t1;Parent=MS.gene09078.t1 |
| chr4.4 | exon | 14120975 | 14121129 | 14120975 | ID=MS.gene09078.t1.exon7;Parent=MS.gene09078.t1 |
| chr4.4 | CDS | 14120975 | 14121129 | 14120975 | ID=cds.MS.gene09078.t1;Parent=MS.gene09078.t1 |
| chr4.4 | exon | 14120541 | 14120676 | 14120541 | ID=MS.gene09078.t1.exon8;Parent=MS.gene09078.t1 |
| chr4.4 | CDS | 14120541 | 14120676 | 14120541 | ID=cds.MS.gene09078.t1;Parent=MS.gene09078.t1 |
| chr4.4 | exon | 14120368 | 14120437 | 14120368 | ID=MS.gene09078.t1.exon9;Parent=MS.gene09078.t1 |
| chr4.4 | CDS | 14120368 | 14120437 | 14120368 | ID=cds.MS.gene09078.t1;Parent=MS.gene09078.t1 |
| chr4.4 | exon | 14120127 | 14120254 | 14120127 | ID=MS.gene09078.t1.exon10;Parent=MS.gene09078.t1 |
| chr4.4 | CDS | 14120127 | 14120254 | 14120127 | ID=cds.MS.gene09078.t1;Parent=MS.gene09078.t1 |
| chr4.4 | exon | 14119748 | 14119804 | 14119748 | ID=MS.gene09078.t1.exon11;Parent=MS.gene09078.t1 |
| chr4.4 | CDS | 14119748 | 14119804 | 14119748 | ID=cds.MS.gene09078.t1;Parent=MS.gene09078.t1 |
| chr4.4 | exon | 14118777 | 14118962 | 14118777 | ID=MS.gene09078.t1.exon12;Parent=MS.gene09078.t1 |
| chr4.4 | CDS | 14118777 | 14118962 | 14118777 | ID=cds.MS.gene09078.t1;Parent=MS.gene09078.t1 |
| chr4.4 | exon | 14118570 | 14118662 | 14118570 | ID=MS.gene09078.t1.exon13;Parent=MS.gene09078.t1 |
| chr4.4 | CDS | 14118570 | 14118662 | 14118570 | ID=cds.MS.gene09078.t1;Parent=MS.gene09078.t1 |
| chr4.4 | exon | 14117739 | 14117824 | 14117739 | ID=MS.gene09078.t1.exon14;Parent=MS.gene09078.t1 |
| chr4.4 | CDS | 14117739 | 14117824 | 14117739 | ID=cds.MS.gene09078.t1;Parent=MS.gene09078.t1 |
| chr4.4 | exon | 14117578 | 14117644 | 14117578 | ID=MS.gene09078.t1.exon15;Parent=MS.gene09078.t1 |
| chr4.4 | CDS | 14117578 | 14117644 | 14117578 | ID=cds.MS.gene09078.t1;Parent=MS.gene09078.t1 |
| chr4.4 | exon | 14117411 | 14117477 | 14117411 | ID=MS.gene09078.t1.exon16;Parent=MS.gene09078.t1 |
| chr4.4 | CDS | 14117411 | 14117477 | 14117411 | ID=cds.MS.gene09078.t1;Parent=MS.gene09078.t1 |
| chr4.4 | exon | 14117200 | 14117336 | 14117200 | ID=MS.gene09078.t1.exon17;Parent=MS.gene09078.t1 |
| chr4.4 | CDS | 14117200 | 14117336 | 14117200 | ID=cds.MS.gene09078.t1;Parent=MS.gene09078.t1 |
| chr4.4 | exon | 14116930 | 14117021 | 14116930 | ID=MS.gene09078.t1.exon18;Parent=MS.gene09078.t1 |
| chr4.4 | CDS | 14116930 | 14117021 | 14116930 | ID=cds.MS.gene09078.t1;Parent=MS.gene09078.t1 |
| chr4.4 | exon | 14116789 | 14116855 | 14116789 | ID=MS.gene09078.t1.exon19;Parent=MS.gene09078.t1 |
| chr4.4 | CDS | 14116789 | 14116855 | 14116789 | ID=cds.MS.gene09078.t1;Parent=MS.gene09078.t1 |
| chr4.4 | exon | 14115907 | 14116071 | 14115907 | ID=MS.gene09078.t1.exon20;Parent=MS.gene09078.t1 |
| chr4.4 | CDS | 14115907 | 14116071 | 14115907 | ID=cds.MS.gene09078.t1;Parent=MS.gene09078.t1 |
| Gene Sequence |
| Protein sequence |
