Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09176.t1 | XP_003606349.2 | 93.7 | 301 | 19 | 0 | 1 | 301 | 1 | 301 | 1.30E-137 | 499.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09176.t1 | Q0WTB8 | 42.6 | 101 | 58 | 0 | 26 | 126 | 21 | 121 | 1.3e-11 | 72.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09176.t1 | G7JNB6 | 93.7 | 301 | 19 | 0 | 1 | 301 | 1 | 301 | 9.6e-138 | 499.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049770 | MS.gene09176 | 0.882368 | 1.10E-70 | -1.69E-46 |
| MS.gene050020 | MS.gene09176 | 0.808503 | 3.00E-50 | -1.69E-46 |
| MS.gene051199 | MS.gene09176 | 0.809233 | 2.09E-50 | -1.69E-46 |
| MS.gene05157 | MS.gene09176 | 0.829086 | 6.27E-55 | -1.69E-46 |
| MS.gene051720 | MS.gene09176 | 0.826011 | 3.43E-54 | -1.69E-46 |
| MS.gene053174 | MS.gene09176 | 0.80092 | 1.15E-48 | -1.69E-46 |
| MS.gene053226 | MS.gene09176 | 0.800739 | 1.25E-48 | -1.69E-46 |
| MS.gene055465 | MS.gene09176 | 0.809219 | 2.11E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene09176 | 0.804478 | 2.12E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09176.t1 | MTR_4g057530 | 97.010 | 301 | 9 | 0 | 1 | 301 | 1 | 301 | 0.0 | 593 |
| MS.gene09176.t1 | MTR_1g090657 | 39.604 | 101 | 58 | 1 | 202 | 299 | 295 | 395 | 1.56e-13 | 70.9 |
| MS.gene09176.t1 | MTR_1g090657 | 29.915 | 234 | 143 | 7 | 13 | 241 | 41 | 258 | 2.78e-11 | 63.9 |
| MS.gene09176.t1 | MTR_1g090657 | 39.604 | 101 | 58 | 1 | 202 | 299 | 279 | 379 | 1.66e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09176.t1 | AT3G44960 | 37.329 | 292 | 148 | 8 | 8 | 289 | 2 | 268 | 1.36e-35 | 129 |
| MS.gene09176.t1 | AT3G44960 | 38.305 | 295 | 142 | 11 | 8 | 289 | 2 | 269 | 3.18e-34 | 125 |
| MS.gene09176.t1 | AT3G44960 | 36.395 | 294 | 153 | 10 | 8 | 289 | 2 | 273 | 7.44e-32 | 119 |
| MS.gene09176.t1 | AT5G04320 | 44.211 | 95 | 53 | 0 | 32 | 126 | 3 | 97 | 1.32e-16 | 80.1 |
| MS.gene09176.t1 | AT5G04320 | 44.211 | 95 | 53 | 0 | 32 | 126 | 27 | 121 | 1.75e-16 | 79.7 |
| MS.gene09176.t1 | AT5G04320 | 44.211 | 95 | 53 | 0 | 32 | 126 | 27 | 121 | 1.75e-16 | 79.7 |
| MS.gene09176.t1 | AT5G04320 | 44.211 | 95 | 53 | 0 | 32 | 126 | 27 | 121 | 1.75e-16 | 79.7 |
| MS.gene09176.t1 | AT5G04320 | 52.941 | 68 | 32 | 0 | 59 | 126 | 3 | 70 | 2.35e-15 | 76.3 |
Find 40 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAGGGCTGCTTTGATTAA+TGG | 0.208431 | 4.3:+43662979 | MS.gene09176:CDS |
| CTTCTCATCTTGATATTTAG+AGG | 0.230253 | 4.3:-43664958 | None:intergenic |
| AGAAAACTTGTTTGAAATAG+AGG | 0.337726 | 4.3:+43664768 | MS.gene09176:CDS |
| AGAAACTTCAAATGCAAAAC+TGG | 0.350795 | 4.3:+43662295 | MS.gene09176:CDS |
| CATCATCATTGCTAATTCTC+GGG | 0.358143 | 4.3:-43663827 | None:intergenic |
| GAAGCACCAAGGCATTCTTT+TGG | 0.363233 | 4.3:+43664886 | MS.gene09176:CDS |
| TGCATCATTATCACAATTAC+AGG | 0.371769 | 4.3:+43663675 | MS.gene09176:CDS |
| TCATCATCATTGCTAATTCT+CGG | 0.397082 | 4.3:-43663828 | None:intergenic |
| GCCGACGGAGAATCAGAAAA+TGG | 0.397671 | 4.3:+43661652 | MS.gene09176:CDS |
| TACTGCTAACATGAGACTAT+TGG | 0.402163 | 4.3:-43662331 | None:intergenic |
| TTTCTAGAGGTTCGTGTACA+TGG | 0.406909 | 4.3:-43664750 | None:intergenic |
| ATTTAGAGGAACCTCTTTGT+AGG | 0.408254 | 4.3:-43664944 | None:intergenic |
| CAATATGCTATCACTCAATC+TGG | 0.413239 | 4.3:+43664796 | MS.gene09176:CDS |
| AAAATGGCGAAGAAATCAAT+TGG | 0.432317 | 4.3:+43661668 | MS.gene09176:CDS |
| AAGAAAAGGTTAAAGACAAT+AGG | 0.449030 | 4.3:+43664016 | MS.gene09176:CDS |
| TGAACAGTAAAATGATAGAA+AGG | 0.482472 | 4.3:+43662235 | MS.gene09176:intron |
| TACCTTGAGGAGTTGTTGAA+TGG | 0.485020 | 4.3:-43661792 | None:intergenic |
| GTTTGACCAGGAGACGCGTT+AGG | 0.490458 | 4.3:+43663862 | MS.gene09176:CDS |
| AAAGAATAAAAGCAAAGAAA+AGG | 0.491272 | 4.3:+43664002 | MS.gene09176:CDS |
| GTTGCGAAGGGCAGCTGAGA+AGG | 0.508038 | 4.3:+43664915 | MS.gene09176:CDS |
| GAGACATTCTGCTGCGTCAA+AGG | 0.508047 | 4.3:+43664726 | MS.gene09176:CDS |
| AGAGGAACCTCTTTGTAGGA+TGG | 0.515473 | 4.3:-43664940 | None:intergenic |
| TCTACTCCTAACGCGTCTCC+TGG | 0.523467 | 4.3:-43663868 | None:intergenic |
| TGCAGGAGCTTAACTTGGGG+AGG | 0.533630 | 4.3:+43662819 | MS.gene09176:intron |
| TGGAAACACCTTCAAAATGC+AGG | 0.544169 | 4.3:+43662999 | MS.gene09176:CDS |
| TTCTCAGCTGCCCTTCGCAA+CGG | 0.546920 | 4.3:-43664913 | None:intergenic |
| CTCTAAATATCAAGATGAGA+AGG | 0.558638 | 4.3:+43664959 | MS.gene09176:CDS |
| GCAGGAGCTTAACTTGGGGA+GGG | 0.566011 | 4.3:+43662820 | MS.gene09176:intron |
| GGTCTTCCAAAAGAATGCCT+TGG | 0.584014 | 4.3:-43664892 | None:intergenic |
| TTCCATTCAACAACTCCTCA+AGG | 0.584322 | 4.3:+43661790 | MS.gene09176:CDS |
| ATCATCATTGCTAATTCTCG+GGG | 0.585616 | 4.3:-43663826 | None:intergenic |
| ACTGAAAGAAGAGAAAACTC+TGG | 0.601073 | 4.3:+43664853 | MS.gene09176:CDS |
| AGTAAAATGATAGAAAGGAG+TGG | 0.612385 | 4.3:+43662240 | MS.gene09176:intron |
| GGAAGCAGTAGAAGAACCAA+TGG | 0.622754 | 4.3:-43663977 | None:intergenic |
| AAGGATACTTTCTATCCGCA+AGG | 0.627474 | 4.3:-43661928 | None:intergenic |
| GAATTTAATCAACCTCCTTG+CGG | 0.647090 | 4.3:+43661913 | MS.gene09176:CDS |
| GAAGGTTCCATCCTACAAAG+AGG | 0.659677 | 4.3:+43664933 | MS.gene09176:CDS |
| GATACTTTCTATCCGCAAGG+AGG | 0.691506 | 4.3:-43661925 | None:intergenic |
| GGTACTAACTAACATGCCGA+CGG | 0.717552 | 4.3:+43661637 | None:intergenic |
| GTTTAAGAAATGAAGCACCA+AGG | 0.725235 | 4.3:+43664875 | MS.gene09176:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCATAATTTAAAATAACA+TGG | - | chr4.3:43663357-43663376 | None:intergenic | 10.0% |
| !!! | ACTTTTTAATTTGATTTTAA+CGG | + | chr4.3:43662915-43662934 | MS.gene09176:intron | 10.0% |
| !!! | TATAAAATTGATTTTATGTT+TGG | - | chr4.3:43663142-43663161 | None:intergenic | 10.0% |
| !!! | TTTCAATTTAAAATAATGAA+AGG | - | chr4.3:43661950-43661969 | None:intergenic | 10.0% |
| !!! | TTTTTCTTTGTTGTATAATT+TGG | + | chr4.3:43663765-43663784 | MS.gene09176:intron | 15.0% |
| !! | AAAGAATAAAAGCAAAGAAA+AGG | + | chr4.3:43664002-43664021 | MS.gene09176:CDS | 20.0% |
| !! | AAATTATGATTCAATAAGCA+TGG | + | chr4.3:43663366-43663385 | MS.gene09176:intron | 20.0% |
| !! | AATAGATGAACTTCAATAAT+GGG | + | chr4.3:43663167-43663186 | MS.gene09176:intron | 20.0% |
| !! | AATATATCATATTGACATTG+AGG | + | chr4.3:43662759-43662778 | MS.gene09176:intron | 20.0% |
| !! | AATATGAGAAAAATAAGTGA+AGG | - | chr4.3:43663717-43663736 | None:intergenic | 20.0% |
| !! | ACAAAATTGAAGATGATTAT+AGG | - | chr4.3:43662533-43662552 | None:intergenic | 20.0% |
| !! | ATAAATTTGACAAATATGCT+AGG | + | chr4.3:43662667-43662686 | MS.gene09176:intron | 20.0% |
| !! | ATATATCATATTGACATTGA+GGG | + | chr4.3:43662760-43662779 | MS.gene09176:intron | 20.0% |
| !! | ATATGAGAAAAATAAGTGAA+GGG | - | chr4.3:43663716-43663735 | None:intergenic | 20.0% |
| !! | CAAAATTGAAGATGATTATA+GGG | - | chr4.3:43662532-43662551 | None:intergenic | 20.0% |
| !! | TAAATTTGACAAATATGCTA+GGG | + | chr4.3:43662668-43662687 | MS.gene09176:intron | 20.0% |
| !! | TAATAGATGAACTTCAATAA+TGG | + | chr4.3:43663166-43663185 | MS.gene09176:intron | 20.0% |
| !! | TATACAACAAAGAAAAAATG+AGG | - | chr4.3:43663762-43663781 | None:intergenic | 20.0% |
| !! | TGAAAAATTGTTGTGTTAAT+AGG | + | chr4.3:43664166-43664185 | MS.gene09176:intron | 20.0% |
| !! | TGTAATTTATACACTAAAAG+TGG | + | chr4.3:43662642-43662661 | MS.gene09176:intron | 20.0% |
| !!! | AAAATTGATTTTATGTTTGG+AGG | - | chr4.3:43663139-43663158 | None:intergenic | 20.0% |
| !!! | AAATTATTATTTTGGAACTC+TGG | - | chr4.3:43664142-43664161 | None:intergenic | 20.0% |
| !!! | CATAATTTAAAATAACATGG+CGG | - | chr4.3:43663354-43663373 | None:intergenic | 20.0% |
| !!! | TTATTAGTTTTTGTTTGTGA+AGG | + | chr4.3:43662170-43662189 | MS.gene09176:intron | 20.0% |
| !!! | TTCACTTATTTTTCTCATAT+TGG | + | chr4.3:43663716-43663735 | MS.gene09176:intron | 20.0% |
| ! | AAAAGAAACTCAATTACACA+AGG | - | chr4.3:43662131-43662150 | None:intergenic | 25.0% |
| ! | AAGAAAAGGTTAAAGACAAT+AGG | + | chr4.3:43664016-43664035 | MS.gene09176:CDS | 25.0% |
| ! | AATTCTGCTTAACTTTGTTA+TGG | + | chr4.3:43663944-43663963 | MS.gene09176:intron | 25.0% |
| ! | AATTGCATAAGAAACTTATG+AGG | + | chr4.3:43664372-43664391 | MS.gene09176:intron | 25.0% |
| ! | CACATAAGTATATAGTGATA+TGG | + | chr4.3:43664465-43664484 | MS.gene09176:intron | 25.0% |
| ! | CATACTCAAATAAACAAACA+CGG | - | chr4.3:43662065-43662084 | None:intergenic | 25.0% |
| ! | CATATCACTATATACTTATG+TGG | - | chr4.3:43664467-43664486 | None:intergenic | 25.0% |
| ! | CATGTGTTAATAGCATTTAA+TGG | + | chr4.3:43664524-43664543 | MS.gene09176:intron | 25.0% |
| ! | CTGTTTAATGTATCTTTCAA+TGG | + | chr4.3:43663399-43663418 | MS.gene09176:intron | 25.0% |
| ! | GTTAATCTTTCCATAAAGAA+GGG | - | chr4.3:43663332-43663351 | None:intergenic | 25.0% |
| ! | TGAACAGTAAAATGATAGAA+AGG | + | chr4.3:43662235-43662254 | MS.gene09176:intron | 25.0% |
| ! | TTACTGTTCAAACTAAATCA+AGG | - | chr4.3:43662225-43662244 | None:intergenic | 25.0% |
| ! | TTGTTTATTTGAGTATGTGT+TGG | + | chr4.3:43662068-43662087 | MS.gene09176:intron | 25.0% |
| !! | AATGCAATTTTGTAAGTTGT+AGG | - | chr4.3:43662585-43662604 | None:intergenic | 25.0% |
| !! | AGAAAACTTGTTTGAAATAG+AGG | + | chr4.3:43664768-43664787 | MS.gene09176:CDS | 25.0% |
| !! | ATAATCAATTCGAGTTCAAA+AGG | - | chr4.3:43662885-43662904 | None:intergenic | 25.0% |
| !! | ATTTCAAACAAGTTTTCTAG+AGG | - | chr4.3:43664766-43664785 | None:intergenic | 25.0% |
| !! | TAATCAATTCGAGTTCAAAA+GGG | - | chr4.3:43662884-43662903 | None:intergenic | 25.0% |
| !! | TCTTTGTTGTATAATTTGGT+TGG | + | chr4.3:43663769-43663788 | MS.gene09176:intron | 25.0% |
| !! | TTTCTTATGGTTAATTTTGC+AGG | + | chr4.3:43662802-43662821 | MS.gene09176:intron | 25.0% |
| !!! | ACTTATTTTTCTCATATTGG+AGG | + | chr4.3:43663719-43663738 | MS.gene09176:intron | 25.0% |
| !!! | ATTGAGTTTCTTTTTCAAGA+AGG | + | chr4.3:43662137-43662156 | MS.gene09176:intron | 25.0% |
| !!! | CATTGTTTTAGTTCTATGTA+GGG | + | chr4.3:43662601-43662620 | MS.gene09176:intron | 25.0% |
| !!! | TACTGATTTTGTGTTTCTTA+TGG | + | chr4.3:43662789-43662808 | MS.gene09176:intron | 25.0% |
| !!! | TGATAATGATGCATTCTTTT+CGG | - | chr4.3:43663668-43663687 | None:intergenic | 25.0% |
| !!! | TTCTTTGCTTTTATTCTTTC+TGG | - | chr4.3:43664001-43664020 | None:intergenic | 25.0% |
| !!! | TTGAGTTTCTTTTTCAAGAA+GGG | + | chr4.3:43662138-43662157 | MS.gene09176:intron | 25.0% |
| AAAATACTGAAATTGCGTTG+TGG | + | chr4.3:43662104-43662123 | MS.gene09176:intron | 30.0% | |
| AAAATGGCGAAGAAATCAAT+TGG | + | chr4.3:43661668-43661687 | MS.gene09176:CDS | 30.0% | |
| AGAAACTTCAAATGCAAAAC+TGG | + | chr4.3:43662295-43662314 | MS.gene09176:CDS | 30.0% | |
| AGTAAAATGATAGAAAGGAG+TGG | + | chr4.3:43662240-43662259 | MS.gene09176:intron | 30.0% | |
| ATTCGTGCATTTCATATCAA+CGG | - | chr4.3:43664436-43664455 | None:intergenic | 30.0% | |
| CAAAATATGTCAACGAAGAA+GGG | - | chr4.3:43663911-43663930 | None:intergenic | 30.0% | |
| CCTATTATTATCATCAGTGT+CGG | + | chr4.3:43662475-43662494 | MS.gene09176:intron | 30.0% | |
| CGACACTGATGATAATAATA+GGG | - | chr4.3:43662477-43662496 | None:intergenic | 30.0% | |
| CTCTAAATATCAAGATGAGA+AGG | + | chr4.3:43664959-43664978 | MS.gene09176:CDS | 30.0% | |
| CTTAATGCGAAAAAGACTTT+CGG | + | chr4.3:43661694-43661713 | MS.gene09176:CDS | 30.0% | |
| CTTCTCATCTTGATATTTAG+AGG | - | chr4.3:43664961-43664980 | None:intergenic | 30.0% | |
| GAAAAGAAAAAGGAATTCTG+AGG | - | chr4.3:43662862-43662881 | None:intergenic | 30.0% | |
| GATGATAATAATAGGGAAGT+TGG | - | chr4.3:43662470-43662489 | None:intergenic | 30.0% | |
| GGTTAATCTTTCCATAAAGA+AGG | - | chr4.3:43663333-43663352 | None:intergenic | 30.0% | |
| GTTCAAAAGGGAAAAGAAAA+AGG | - | chr4.3:43662872-43662891 | None:intergenic | 30.0% | |
| TAATGGAAGACACTAATAGA+GGG | + | chr4.3:43664541-43664560 | MS.gene09176:intron | 30.0% | |
| TATGTACTATGTGTAAGAAG+TGG | + | chr4.3:43663195-43663214 | MS.gene09176:intron | 30.0% | |
| TCACTATATACTTATGTGGT+AGG | - | chr4.3:43664463-43664482 | None:intergenic | 30.0% | |
| TCATCATCATTGCTAATTCT+CGG | - | chr4.3:43663831-43663850 | None:intergenic | 30.0% | |
| TCATTGTACTCGATCTAAAA+CGG | - | chr4.3:43663488-43663507 | None:intergenic | 30.0% | |
| TCTTATGAAGTTTACCAATG+TGG | + | chr4.3:43663435-43663454 | MS.gene09176:intron | 30.0% | |
| TGCATCATTATCACAATTAC+AGG | + | chr4.3:43663675-43663694 | MS.gene09176:CDS | 30.0% | |
| TTAATGGAAGACACTAATAG+AGG | + | chr4.3:43664540-43664559 | MS.gene09176:intron | 30.0% | |
| TTGTAACGTGTCAGTAAAAA+TGG | - | chr4.3:43664568-43664587 | None:intergenic | 30.0% | |
| ! | AAAAACAATGTTGTTTGACC+AGG | + | chr4.3:43663850-43663869 | MS.gene09176:CDS | 30.0% |
| ! | CTATTCTTTTCCCTTCTTTA+TGG | + | chr4.3:43663319-43663338 | MS.gene09176:intron | 30.0% |
| !!! | AAGTTTCTCTTTTTTTGCAC+AGG | + | chr4.3:43664692-43664711 | MS.gene09176:intron | 30.0% |
| !!! | CTGTTTGAGTTTTTTTTGAC+AGG | + | chr4.3:43661883-43661902 | MS.gene09176:intron | 30.0% |
| !!! | GCATTGTTTTAGTTCTATGT+AGG | + | chr4.3:43662600-43662619 | MS.gene09176:intron | 30.0% |
| !!! | TGAGTTTCTTTTTCAAGAAG+GGG | + | chr4.3:43662139-43662158 | MS.gene09176:intron | 30.0% |
| !!! | TTTTTAGTTACGTGTGTGTT+TGG | + | chr4.3:43663039-43663058 | MS.gene09176:intron | 30.0% |
| ACATTAGCCATAGATTCACA+TGG | - | chr4.3:43664335-43664354 | None:intergenic | 35.0% | |
| ACTGAAAGAAGAGAAAACTC+TGG | + | chr4.3:43664853-43664872 | MS.gene09176:CDS | 35.0% | |
| AGTAGAGATGGTGATAATTG+AGG | + | chr4.3:43662705-43662724 | MS.gene09176:intron | 35.0% | |
| ATAGTCCTTGAATTGCGAAT+TGG | + | chr4.3:43664206-43664225 | MS.gene09176:intron | 35.0% | |
| ATAGTGATATGGTATCCAAG+TGG | + | chr4.3:43664476-43664495 | MS.gene09176:intron | 35.0% | |
| ATCATCATTGCTAATTCTCG+GGG | - | chr4.3:43663829-43663848 | None:intergenic | 35.0% | |
| ATGTGTAAGAAGTGGTGTTT+GGG | + | chr4.3:43663203-43663222 | MS.gene09176:intron | 35.0% | |
| ATTTAGAGGAACCTCTTTGT+AGG | - | chr4.3:43664947-43664966 | None:intergenic | 35.0% | |
| ATTTGCCAATTCGCAATTCA+AGG | - | chr4.3:43664214-43664233 | None:intergenic | 35.0% | |
| CAATATGCTATCACTCAATC+TGG | + | chr4.3:43664796-43664815 | MS.gene09176:CDS | 35.0% | |
| CACACACGTAACTAAAAATC+AGG | - | chr4.3:43663037-43663056 | None:intergenic | 35.0% | |
| CATCATCATTGCTAATTCTC+GGG | - | chr4.3:43663830-43663849 | None:intergenic | 35.0% | |
| CCAAATTCAGTGTATCAATG+TGG | + | chr4.3:43663509-43663528 | MS.gene09176:intron | 35.0% | |
| CCACATTGATACACTGAATT+TGG | - | chr4.3:43663512-43663531 | None:intergenic | 35.0% | |
| CCGACACTGATGATAATAAT+AGG | - | chr4.3:43662478-43662497 | None:intergenic | 35.0% | |
| GAATTTAATCAACCTCCTTG+CGG | + | chr4.3:43661913-43661932 | MS.gene09176:CDS | 35.0% | |
| GCAAAATATGTCAACGAAGA+AGG | - | chr4.3:43663912-43663931 | None:intergenic | 35.0% | |
| GCAATATAGGCCTAAAACAA+CGG | + | chr4.3:43663555-43663574 | MS.gene09176:intron | 35.0% | |
| GTAGAGATGGTGATAATTGA+GGG | + | chr4.3:43662706-43662725 | MS.gene09176:intron | 35.0% | |
| GTGGTCATTCTATGTACAAA+CGG | + | chr4.3:43663454-43663473 | MS.gene09176:intron | 35.0% | |
| TACTGCTAACATGAGACTAT+TGG | - | chr4.3:43662334-43662353 | None:intergenic | 35.0% | |
| TAGAGATGGTGATAATTGAG+GGG | + | chr4.3:43662707-43662726 | MS.gene09176:intron | 35.0% | |
| TATGTGTAAGAAGTGGTGTT+TGG | + | chr4.3:43663202-43663221 | MS.gene09176:intron | 35.0% | |
| TCAAATAAACAAACACGGAG+TGG | - | chr4.3:43662060-43662079 | None:intergenic | 35.0% | |
| TCATCTGCTTAAATGAAGCA+CGG | + | chr4.3:43662364-43662383 | MS.gene09176:intron | 35.0% | |
| TGCATGACAGAAATTACGTT+TGG | + | chr4.3:43663065-43663084 | MS.gene09176:intron | 35.0% | |
| TGCATGTTATTGTTACCTTG+AGG | - | chr4.3:43661808-43661827 | None:intergenic | 35.0% | |
| TGTACATAGAATGACCACAT+TGG | - | chr4.3:43663452-43663471 | None:intergenic | 35.0% | |
| TTCAATGTCATCACATGTGT+CGG | - | chr4.3:43662442-43662461 | None:intergenic | 35.0% | |
| TTGATCGATGCTCACAATTT+CGG | + | chr4.3:43664631-43664650 | MS.gene09176:intron | 35.0% | |
| TTTGGACTAAGTAGTAGAGA+TGG | + | chr4.3:43662693-43662712 | MS.gene09176:intron | 35.0% | |
| TTTGTTTGTGAAGGAGAAAG+TGG | + | chr4.3:43662179-43662198 | MS.gene09176:intron | 35.0% | |
| ! | AATTTTGCAGGAGCTTAACT+TGG | + | chr4.3:43662814-43662833 | MS.gene09176:intron | 35.0% |
| ! | AGGTTAGTTCTTATGCTCAT+TGG | + | chr4.3:43664036-43664055 | MS.gene09176:intron | 35.0% |
| ! | ATTTTGCAGGAGCTTAACTT+GGG | + | chr4.3:43662815-43662834 | MS.gene09176:intron | 35.0% |
| ! | CTTCTTTCAGTTTTCACAGA+TGG | - | chr4.3:43664844-43664863 | None:intergenic | 35.0% |
| ! | GACAAATATGCTAGGGATTT+TGG | + | chr4.3:43662675-43662694 | MS.gene09176:intron | 35.0% |
| ! | GTTTAAGAAATGAAGCACCA+AGG | + | chr4.3:43664875-43664894 | MS.gene09176:CDS | 35.0% |
| ! | TGTATAATTTGGTTGGCTCA+AGG | + | chr4.3:43663776-43663795 | MS.gene09176:intron | 35.0% |
| !! | AAAACGGGTTTGTTAGAAGA+CGG | - | chr4.3:43663601-43663620 | None:intergenic | 35.0% |
| AAGGATACTTTCTATCCGCA+AGG | - | chr4.3:43661931-43661950 | None:intergenic | 40.0% | |
| AAGTGAAGGGTTTACAGATC+AGG | - | chr4.3:43663703-43663722 | None:intergenic | 40.0% | |
| AGGCCTATATTGCACATTGT+AGG | - | chr4.3:43663548-43663567 | None:intergenic | 40.0% | |
| AGTGGAAAATGTAGTGACTC+AGG | - | chr4.3:43662042-43662061 | None:intergenic | 40.0% | |
| ATTCTATGTACAAACGGCCT+AGG | + | chr4.3:43663460-43663479 | MS.gene09176:intron | 40.0% | |
| CCTATATTGCACATTGTAGG+GGG | - | chr4.3:43663545-43663564 | None:intergenic | 40.0% | |
| CTATATTGCACATTGTAGGG+GGG | - | chr4.3:43663544-43663563 | None:intergenic | 40.0% | |
| GACTAAAAGCCTATGAAGCA+CGG | - | chr4.3:43662510-43662529 | None:intergenic | 40.0% | |
| GCCTATATTGCACATTGTAG+GGG | - | chr4.3:43663546-43663565 | None:intergenic | 40.0% | |
| GGAGATAGACACTGAAAAAG+TGG | + | chr4.3:43663633-43663652 | MS.gene09176:CDS | 40.0% | |
| GGCCTATATTGCACATTGTA+GGG | - | chr4.3:43663547-43663566 | None:intergenic | 40.0% | |
| GTTCTTCTATACCCGTCTTT+CGG | + | chr4.3:43662558-43662577 | MS.gene09176:intron | 40.0% | |
| TAAGTTGTAGGACCGAAAGA+CGG | - | chr4.3:43662573-43662592 | None:intergenic | 40.0% | |
| TACCTTGAGGAGTTGTTGAA+TGG | - | chr4.3:43661795-43661814 | None:intergenic | 40.0% | |
| TAGCCATAGATTCACATGGA+AGG | - | chr4.3:43664331-43664350 | None:intergenic | 40.0% | |
| TAGCCTTCCATGTGAATCTA+TGG | + | chr4.3:43664325-43664344 | MS.gene09176:intron | 40.0% | |
| TAGGAGTAGATGTAAGTGCT+AGG | + | chr4.3:43663881-43663900 | MS.gene09176:intron | 40.0% | |
| TCGTTCAATGAGCTATGCTA+AGG | - | chr4.3:43664065-43664084 | None:intergenic | 40.0% | |
| TGATAATTGAGGGGCTGAAT+GGG | + | chr4.3:43662716-43662735 | MS.gene09176:intron | 40.0% | |
| TGATATGGTATCCAAGTGGA+TGG | + | chr4.3:43664480-43664499 | MS.gene09176:intron | 40.0% | |
| TGATCGATGCTCACAATTTC+GGG | + | chr4.3:43664632-43664651 | MS.gene09176:intron | 40.0% | |
| TGGAAACACCTTCAAAATGC+AGG | + | chr4.3:43662999-43663018 | MS.gene09176:CDS | 40.0% | |
| TGGAAGGCTACATGTTCATT+TGG | - | chr4.3:43664315-43664334 | None:intergenic | 40.0% | |
| TTATGGAACTTTGCAGCCAT+TGG | + | chr4.3:43663961-43663980 | MS.gene09176:intron | 40.0% | |
| TTCCATTCAACAACTCCTCA+AGG | + | chr4.3:43661790-43661809 | MS.gene09176:CDS | 40.0% | |
| ! | AAAGCACACCTGCATTTTGA+AGG | - | chr4.3:43663010-43663029 | None:intergenic | 40.0% |
| ! | TTCTAACAAACCCGTTTTGC+AGG | + | chr4.3:43663603-43663622 | MS.gene09176:intron | 40.0% |
| ! | TTTCTAGAGGTTCGTGTACA+TGG | - | chr4.3:43664753-43664772 | None:intergenic | 40.0% |
| ! | TTTTGCACAGGAGAAGTTTG+AGG | + | chr4.3:43664704-43664723 | MS.gene09176:intron | 40.0% |
| !! | ATATTGGAGGCATTGATGGA+TGG | + | chr4.3:43663732-43663751 | MS.gene09176:intron | 40.0% |
| !! | TCTCATATTGGAGGCATTGA+TGG | + | chr4.3:43663728-43663747 | MS.gene09176:intron | 40.0% |
| !! | TTTGGAACTCTGGAATCTCA+TGG | - | chr4.3:43664132-43664151 | None:intergenic | 40.0% |
| !! | TTTTGCAGGAGCTTAACTTG+GGG | + | chr4.3:43662816-43662835 | MS.gene09176:intron | 40.0% |
| !!! | CTCCACTTTTTCCTGCAAAA+CGG | - | chr4.3:43663617-43663636 | None:intergenic | 40.0% |
| !!! | TCCACTTTTTCCTGCAAAAC+GGG | - | chr4.3:43663616-43663635 | None:intergenic | 40.0% |
| AAGACGGCCAAAAATAGCGA+AGG | - | chr4.3:43663585-43663604 | None:intergenic | 45.0% | |
| AAGTTGTAGGACCGAAAGAC+GGG | - | chr4.3:43662572-43662591 | None:intergenic | 45.0% | |
| AGACGGCCAAAAATAGCGAA+GGG | - | chr4.3:43663584-43663603 | None:intergenic | 45.0% | |
| AGAGGAACCTCTTTGTAGGA+TGG | - | chr4.3:43664943-43664962 | None:intergenic | 45.0% | |
| CCCCCTACAATGTGCAATAT+AGG | + | chr4.3:43663542-43663561 | MS.gene09176:intron | 45.0% | |
| CCTCTAGCAGCAGATGTTAA+CGG | - | chr4.3:43664277-43664296 | None:intergenic | 45.0% | |
| CGAACATATGACCATCCACT+TGG | - | chr4.3:43664494-43664513 | None:intergenic | 45.0% | |
| GAAGGTTCCATCCTACAAAG+AGG | + | chr4.3:43664933-43664952 | MS.gene09176:CDS | 45.0% | |
| GATACTTTCTATCCGCAAGG+AGG | - | chr4.3:43661928-43661947 | None:intergenic | 45.0% | |
| GCACGGAGACTTCTTATGAA+AGG | + | chr4.3:43662381-43662400 | MS.gene09176:intron | 45.0% | |
| GGAAGCAGTAGAAGAACCAA+TGG | - | chr4.3:43663980-43663999 | None:intergenic | 45.0% | |
| GGTCTTCCAAAAGAATGCCT+TGG | - | chr4.3:43664895-43664914 | None:intergenic | 45.0% | |
| GTGATAATTGAGGGGCTGAA+TGG | + | chr4.3:43662715-43662734 | MS.gene09176:intron | 45.0% | |
| TAGCAGCAGATGTTAACGGA+TGG | - | chr4.3:43664273-43664292 | None:intergenic | 45.0% | |
| TGTTTGTGTCCGTGCTTCAT+AGG | + | chr4.3:43662498-43662517 | MS.gene09176:intron | 45.0% | |
| TTCGCGTTGTTACAGTCTAG+TGG | + | chr4.3:43661977-43661996 | MS.gene09176:intron | 45.0% | |
| ! | ACCCGTTTTGCAGGAAAAAG+TGG | + | chr4.3:43663612-43663631 | MS.gene09176:intron | 45.0% |
| ! | CACTGCAGCATGAACTTTTG+TGG | + | chr4.3:43662959-43662978 | MS.gene09176:CDS | 45.0% |
| ! | CTTCTTATGAAAGGCGTGTC+TGG | + | chr4.3:43662390-43662409 | MS.gene09176:intron | 45.0% |
| ! | GCAGCATGAACTTTTGTGGA+GGG | + | chr4.3:43662963-43662982 | MS.gene09176:CDS | 45.0% |
| ! | TGCAGCATGAACTTTTGTGG+AGG | + | chr4.3:43662962-43662981 | MS.gene09176:CDS | 45.0% |
| ! | TGGAGGGCTGCTTTGATTAA+TGG | + | chr4.3:43662979-43662998 | MS.gene09176:CDS | 45.0% |
| !! | GAAGCACCAAGGCATTCTTT+TGG | + | chr4.3:43664886-43664905 | MS.gene09176:CDS | 45.0% |
| !! | GCCATTTTCTGATTCTCCGT+CGG | - | chr4.3:43661656-43661675 | None:intergenic | 45.0% |
| !! | TTTTGGAAGACCGTTGCGAA+GGG | + | chr4.3:43664903-43664922 | MS.gene09176:CDS | 45.0% |
| !!! | TTCATATTAAATTATTATTT+TGG | - | chr4.3:43664150-43664169 | None:intergenic | 5.0% |
| CCGTTAACATCTGCTGCTAG+AGG | + | chr4.3:43664274-43664293 | MS.gene09176:intron | 50.0% | |
| GAGACATTCTGCTGCGTCAA+AGG | + | chr4.3:43664726-43664745 | MS.gene09176:CDS | 50.0% | |
| GCCGACGGAGAATCAGAAAA+TGG | + | chr4.3:43661652-43661671 | MS.gene09176:CDS | 50.0% | |
| ! | CTCGATCTAAAACGGCTCCT+AGG | - | chr4.3:43663480-43663499 | None:intergenic | 50.0% |
| ! | GTCATCACATGTGTCGGTGT+CGG | - | chr4.3:43662436-43662455 | None:intergenic | 50.0% |
| !! | CGAAGGGAGACCGTTGTTTT+AGG | - | chr4.3:43663568-43663587 | None:intergenic | 50.0% |
| !! | CGGTCTCCCTTCGCTATTTT+TGG | + | chr4.3:43663575-43663594 | MS.gene09176:intron | 50.0% |
| !! | CTTTTGGAAGACCGTTGCGA+AGG | + | chr4.3:43664902-43664921 | MS.gene09176:CDS | 50.0% |
| GTTTGACCAGGAGACGCGTT+AGG | + | chr4.3:43663862-43663881 | MS.gene09176:CDS | 55.0% | |
| TCTACTCCTAACGCGTCTCC+TGG | - | chr4.3:43663871-43663890 | None:intergenic | 55.0% | |
| TTCTCAGCTGCCCTTCGCAA+CGG | - | chr4.3:43664916-43664935 | None:intergenic | 55.0% | |
| ! | GCAGGAGCTTAACTTGGGGA+GGG | + | chr4.3:43662820-43662839 | MS.gene09176:intron | 55.0% |
| ! | TGCAGGAGCTTAACTTGGGG+AGG | + | chr4.3:43662819-43662838 | MS.gene09176:intron | 55.0% |
| GTTGCGAAGGGCAGCTGAGA+AGG | + | chr4.3:43664915-43664934 | MS.gene09176:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 43661650 | 43664990 | 43661650 | ID=MS.gene09176 |
| chr4.3 | mRNA | 43661650 | 43664990 | 43661650 | ID=MS.gene09176.t1;Parent=MS.gene09176 |
| chr4.3 | exon | 43661650 | 43661811 | 43661650 | ID=MS.gene09176.t1.exon1;Parent=MS.gene09176.t1 |
| chr4.3 | CDS | 43661650 | 43661811 | 43661650 | ID=cds.MS.gene09176.t1;Parent=MS.gene09176.t1 |
| chr4.3 | exon | 43661905 | 43661942 | 43661905 | ID=MS.gene09176.t1.exon2;Parent=MS.gene09176.t1 |
| chr4.3 | CDS | 43661905 | 43661942 | 43661905 | ID=cds.MS.gene09176.t1;Parent=MS.gene09176.t1 |
| chr4.3 | exon | 43662242 | 43662350 | 43662242 | ID=MS.gene09176.t1.exon3;Parent=MS.gene09176.t1 |
| chr4.3 | CDS | 43662242 | 43662350 | 43662242 | ID=cds.MS.gene09176.t1;Parent=MS.gene09176.t1 |
| chr4.3 | exon | 43662824 | 43662847 | 43662824 | ID=MS.gene09176.t1.exon4;Parent=MS.gene09176.t1 |
| chr4.3 | CDS | 43662824 | 43662847 | 43662824 | ID=cds.MS.gene09176.t1;Parent=MS.gene09176.t1 |
| chr4.3 | exon | 43662952 | 43663020 | 43662952 | ID=MS.gene09176.t1.exon5;Parent=MS.gene09176.t1 |
| chr4.3 | CDS | 43662952 | 43663020 | 43662952 | ID=cds.MS.gene09176.t1;Parent=MS.gene09176.t1 |
| chr4.3 | exon | 43663625 | 43663696 | 43663625 | ID=MS.gene09176.t1.exon6;Parent=MS.gene09176.t1 |
| chr4.3 | CDS | 43663625 | 43663696 | 43663625 | ID=cds.MS.gene09176.t1;Parent=MS.gene09176.t1 |
| chr4.3 | exon | 43663798 | 43663891 | 43663798 | ID=MS.gene09176.t1.exon7;Parent=MS.gene09176.t1 |
| chr4.3 | CDS | 43663798 | 43663891 | 43663798 | ID=cds.MS.gene09176.t1;Parent=MS.gene09176.t1 |
| chr4.3 | exon | 43663977 | 43664037 | 43663977 | ID=MS.gene09176.t1.exon8;Parent=MS.gene09176.t1 |
| chr4.3 | CDS | 43663977 | 43664037 | 43663977 | ID=cds.MS.gene09176.t1;Parent=MS.gene09176.t1 |
| chr4.3 | exon | 43664714 | 43664990 | 43664714 | ID=MS.gene09176.t1.exon9;Parent=MS.gene09176.t1 |
| chr4.3 | CDS | 43664714 | 43664990 | 43664714 | ID=cds.MS.gene09176.t1;Parent=MS.gene09176.t1 |
| Gene Sequence |
| Protein sequence |
