Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049770.t1 | XP_003606349.2 | 93.4 | 301 | 19 | 1 | 1 | 300 | 1 | 301 | 3.30E-136 | 494.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049770.t1 | Q0WTB8 | 42.6 | 101 | 58 | 0 | 26 | 126 | 21 | 121 | 9.7e-12 | 72.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049770.t1 | G7JNB6 | 93.4 | 301 | 19 | 1 | 1 | 300 | 1 | 301 | 2.4e-136 | 494.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049770 | MS.gene05157 | 0.816507 | 5.34E-52 | -1.69E-46 |
| MS.gene049770 | MS.gene051720 | 0.818421 | 1.98E-52 | -1.69E-46 |
| MS.gene049770 | MS.gene062743 | 0.801242 | 9.87E-49 | -1.69E-46 |
| MS.gene049770 | MS.gene065667 | 0.815403 | 9.41E-52 | -1.69E-46 |
| MS.gene049770 | MS.gene09176 | 0.882368 | 1.10E-70 | -1.69E-46 |
| MS.gene049770 | MS.gene21122 | 0.801239 | 9.89E-49 | -1.69E-46 |
| MS.gene049770 | MS.gene21960 | 0.804453 | 2.15E-49 | -1.69E-46 |
| MS.gene049770 | MS.gene23030 | 0.813323 | 2.71E-51 | -1.69E-46 |
| MS.gene049770 | MS.gene35631 | 0.802212 | 6.24E-49 | -1.69E-46 |
| MS.gene049770 | MS.gene36265 | 0.808938 | 2.42E-50 | -1.69E-46 |
| MS.gene049770 | MS.gene36334 | 0.801185 | 1.01E-48 | -1.69E-46 |
| MS.gene049770 | MS.gene53586 | 0.802381 | 5.76E-49 | -1.69E-46 |
| MS.gene049770 | MS.gene56717 | 0.8132 | 2.89E-51 | -1.69E-46 |
| MS.gene049770 | MS.gene71704 | 0.810899 | 9.16E-51 | -1.69E-46 |
| MS.gene049770 | MS.gene84426 | 0.820577 | 6.37E-53 | -1.69E-46 |
| MS.gene049770 | MS.gene88304 | 0.801448 | 8.96E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049770.t1 | MTR_4g057530 | 96.346 | 301 | 10 | 1 | 1 | 300 | 1 | 301 | 0.0 | 587 |
| MS.gene049770.t1 | MTR_1g090657 | 39.604 | 101 | 57 | 2 | 202 | 298 | 279 | 379 | 9.08e-12 | 65.5 |
| MS.gene049770.t1 | MTR_1g090657 | 39.604 | 101 | 57 | 2 | 202 | 298 | 295 | 395 | 9.09e-12 | 65.5 |
| MS.gene049770.t1 | MTR_1g090657 | 29.915 | 234 | 143 | 7 | 13 | 241 | 41 | 258 | 1.73e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049770.t1 | AT3G44960 | 37.329 | 292 | 147 | 9 | 8 | 288 | 2 | 268 | 7.07e-35 | 127 |
| MS.gene049770.t1 | AT3G44960 | 38.305 | 295 | 141 | 12 | 8 | 288 | 2 | 269 | 1.52e-33 | 124 |
| MS.gene049770.t1 | AT3G44960 | 36.395 | 294 | 152 | 11 | 8 | 288 | 2 | 273 | 3.88e-31 | 117 |
| MS.gene049770.t1 | AT5G04320 | 44.211 | 95 | 53 | 0 | 32 | 126 | 3 | 97 | 1.12e-16 | 80.5 |
| MS.gene049770.t1 | AT5G04320 | 44.211 | 95 | 53 | 0 | 32 | 126 | 27 | 121 | 1.59e-16 | 80.1 |
| MS.gene049770.t1 | AT5G04320 | 44.211 | 95 | 53 | 0 | 32 | 126 | 27 | 121 | 1.59e-16 | 80.1 |
| MS.gene049770.t1 | AT5G04320 | 44.211 | 95 | 53 | 0 | 32 | 126 | 27 | 121 | 1.59e-16 | 80.1 |
| MS.gene049770.t1 | AT5G04320 | 52.174 | 69 | 33 | 0 | 58 | 126 | 2 | 70 | 2.13e-15 | 76.3 |
Find 41 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAGGGCTGCTTTGATTAA+TGG | 0.208431 | 4.2:+46327774 | MS.gene049770:CDS |
| CTTCTCATCTTGATATTTAG+AGG | 0.230253 | 4.2:-46329722 | None:intergenic |
| AGAAAACTTGTTTGAAATAG+AGG | 0.337726 | 4.2:+46329535 | MS.gene049770:CDS |
| TGCATCATTATCACAATTAC+AGG | 0.352256 | 4.2:+46328441 | MS.gene049770:CDS |
| CATCATCATTGCTAATTCTC+GGG | 0.358143 | 4.2:-46328594 | None:intergenic |
| GAAGCACCAAGGCATTCTTT+TGG | 0.363233 | 4.2:+46329650 | MS.gene049770:CDS |
| AGAAGTTGCAAATGCAAAAC+TGG | 0.370105 | 4.2:+46327113 | MS.gene049770:CDS |
| TCATCATCATTGCTAATTCT+CGG | 0.397082 | 4.2:-46328595 | None:intergenic |
| GCCGACGGAGAATCAGAAAA+TGG | 0.397671 | 4.2:+46326475 | MS.gene049770:CDS |
| TTTCTAGAGGTTCGTGTACA+TGG | 0.406909 | 4.2:-46329517 | None:intergenic |
| ATTTAGAGGAACCTCTTTGT+AGG | 0.408254 | 4.2:-46329708 | None:intergenic |
| AACCGCTAACATGAGACTAT+TGG | 0.409768 | 4.2:-46327149 | None:intergenic |
| CAATATGCTATCACTCAATC+TGG | 0.413239 | 4.2:+46329563 | MS.gene049770:CDS |
| AAAATGGCGAAGAAATCAAT+TGG | 0.432317 | 4.2:+46326491 | MS.gene049770:CDS |
| AAGAAAAGGTTAAAGACAAT+AGG | 0.449030 | 4.2:+46328783 | MS.gene049770:CDS |
| TACCTTGAGGAGTTGTTGAA+TGG | 0.485020 | 4.2:-46326615 | None:intergenic |
| GTTTGACCAGGAGACGCGTT+AGG | 0.490458 | 4.2:+46328629 | MS.gene049770:CDS |
| AAAGAATAAAAGCAAAGAAA+AGG | 0.491272 | 4.2:+46328769 | MS.gene049770:CDS |
| TTCTCAGCTGCCCTTCGAAA+CGG | 0.498503 | 4.2:-46329677 | None:intergenic |
| GTTTCGAAGGGCAGCTGAGA+AGG | 0.504011 | 4.2:+46329679 | MS.gene049770:CDS |
| GAGACATTCTGCTGCGTCAA+AGG | 0.508047 | 4.2:+46329493 | MS.gene049770:CDS |
| TGAACAGTAAAATGATAGAA+AGG | 0.512976 | 4.2:+46327053 | MS.gene049770:intron |
| GTCCAATAGTCTCATGTTAG+CGG | 0.514665 | 4.2:+46327147 | MS.gene049770:CDS |
| AGAGGAACCTCTTTGTAGGA+TGG | 0.515473 | 4.2:-46329704 | None:intergenic |
| TCTACTCCTAACGCGTCTCC+TGG | 0.523467 | 4.2:-46328635 | None:intergenic |
| TGGAAACAGCTTCAAAATGC+AGG | 0.529427 | 4.2:+46327794 | MS.gene049770:CDS |
| TGCAGGAGCTTAACTTGGGG+AGG | 0.533630 | 4.2:+46327614 | MS.gene049770:intron |
| ACTGAAAGAAGAGAAAGCTC+TGG | 0.539195 | 4.2:+46329617 | MS.gene049770:CDS |
| CTCTAAATATCAAGATGAGA+AGG | 0.558638 | 4.2:+46329723 | MS.gene049770:CDS |
| GCAGGAGCTTAACTTGGGGA+GGG | 0.566011 | 4.2:+46327615 | MS.gene049770:intron |
| GGTCTTCCAAAAGAATGCCT+TGG | 0.584014 | 4.2:-46329656 | None:intergenic |
| TTCCATTCAACAACTCCTCA+AGG | 0.584322 | 4.2:+46326613 | MS.gene049770:CDS |
| ATCATCATTGCTAATTCTCG+GGG | 0.585616 | 4.2:-46328593 | None:intergenic |
| AGTAAAATGATAGAAAGGAG+TGG | 0.612385 | 4.2:+46327058 | MS.gene049770:intron |
| GGAAGCAGTAGAAGAACCAA+TGG | 0.622754 | 4.2:-46328744 | None:intergenic |
| AAGGATACTTTCTATCCGCA+AGG | 0.627474 | 4.2:-46326752 | None:intergenic |
| GAATTTAATCAACCTCCTTG+CGG | 0.647090 | 4.2:+46326737 | MS.gene049770:CDS |
| GAAGGTTCCATCCTACAAAG+AGG | 0.659677 | 4.2:+46329697 | MS.gene049770:CDS |
| GATACTTTCTATCCGCAAGG+AGG | 0.691506 | 4.2:-46326749 | None:intergenic |
| GGTACTAACTAACATGCCGA+CGG | 0.717552 | 4.2:+46326460 | None:intergenic |
| GTTTAAGAAATGAAGCACCA+AGG | 0.725235 | 4.2:+46329639 | MS.gene049770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAATTTATATATTAAA+AGG | + | chr4.2:46327434-46327453 | MS.gene049770:intron | 0.0% |
| !!! | AATCATAATTTAAAATAACT+TGG | - | chr4.2:46328121-46328140 | None:intergenic | 10.0% |
| !!! | ACTTTTTAATTTGATTTTAA+CGG | + | chr4.2:46327710-46327729 | MS.gene049770:intron | 10.0% |
| !!! | TTTCAATTTAAAATAATGAA+AGG | - | chr4.2:46326774-46326793 | None:intergenic | 10.0% |
| !! | AAAAAATTGAGATGATTATA+CGG | - | chr4.2:46327354-46327373 | None:intergenic | 15.0% |
| !! | ATAAATTTGACAAATATGTT+AGG | + | chr4.2:46327462-46327481 | MS.gene049770:intron | 15.0% |
| !! | TAAATTTGACAAATATGTTA+GGG | + | chr4.2:46327463-46327482 | MS.gene049770:intron | 15.0% |
| !!! | AAAATTGATTTGAATATGTT+TGG | - | chr4.2:46327900-46327919 | None:intergenic | 15.0% |
| !! | AAACTTAGTAACTAAAAATC+AGG | - | chr4.2:46327832-46327851 | None:intergenic | 20.0% |
| !! | AAAGAATAAAAGCAAAGAAA+AGG | + | chr4.2:46328769-46328788 | MS.gene049770:CDS | 20.0% |
| !! | AATAGATGAACTTCAATAAT+GGG | + | chr4.2:46327928-46327947 | MS.gene049770:intron | 20.0% |
| !! | AATATGAGAAAAATAAGTGA+AGG | - | chr4.2:46328483-46328502 | None:intergenic | 20.0% |
| !! | ATATGAGAAAAATAAGTGAA+GGG | - | chr4.2:46328482-46328501 | None:intergenic | 20.0% |
| !! | TAATAGATGAACTTCAATAA+TGG | + | chr4.2:46327927-46327946 | MS.gene049770:intron | 20.0% |
| !! | TGAAAAATTGTTGTGTTAAT+AGG | + | chr4.2:46328933-46328952 | MS.gene049770:intron | 20.0% |
| !! | TTTATTGATGTATCTTTCAA+TGG | + | chr4.2:46328166-46328185 | MS.gene049770:intron | 20.0% |
| !!! | AAATTATTATTTTGGAACTC+TGG | - | chr4.2:46328909-46328928 | None:intergenic | 20.0% |
| !!! | AATATATCATATTGACTTTG+AGG | + | chr4.2:46327554-46327573 | MS.gene049770:intron | 20.0% |
| !!! | ATATATCATATTGACTTTGA+GGG | + | chr4.2:46327555-46327574 | MS.gene049770:intron | 20.0% |
| !!! | CATAATTTAAAATAACTTGG+CGG | - | chr4.2:46328118-46328137 | None:intergenic | 20.0% |
| !!! | TGATAATGATGCATTATTTT+CGG | - | chr4.2:46328434-46328453 | None:intergenic | 20.0% |
| !!! | TTATTAGTTTTTGTTTGTGA+AGG | + | chr4.2:46326993-46327012 | MS.gene049770:intron | 20.0% |
| !!! | TTCACTTATTTTTCTCATAT+TGG | + | chr4.2:46328482-46328501 | MS.gene049770:intron | 20.0% |
| !!! | TTTTTCTTTGTCGTATAATT+TGG | + | chr4.2:46328532-46328551 | MS.gene049770:intron | 20.0% |
| ! | AAAATATTGAAATTGCGTTG+TGG | + | chr4.2:46326928-46326947 | MS.gene049770:intron | 25.0% |
| ! | AAGAAAAGGTTAAAGACAAT+AGG | + | chr4.2:46328783-46328802 | MS.gene049770:CDS | 25.0% |
| ! | AATTCTGCTTAACTTTGTTA+TGG | + | chr4.2:46328711-46328730 | MS.gene049770:intron | 25.0% |
| ! | ATACGACAAAGAAAAAAATG+AGG | - | chr4.2:46328528-46328547 | None:intergenic | 25.0% |
| ! | CACATAAGTATATAGTGATA+CGG | + | chr4.2:46329232-46329251 | MS.gene049770:intron | 25.0% |
| ! | CATACTCAAATAAACAAACA+CGG | - | chr4.2:46326889-46326908 | None:intergenic | 25.0% |
| ! | GTTAATCTTTCCATAAAGAA+GGG | - | chr4.2:46328096-46328115 | None:intergenic | 25.0% |
| ! | TGAACAGTAAAATGATAGAA+AGG | + | chr4.2:46327053-46327072 | MS.gene049770:intron | 25.0% |
| ! | TGTATATTATTGTTACCTTG+AGG | - | chr4.2:46326631-46326650 | None:intergenic | 25.0% |
| ! | TTGTTTATTTGAGTATGTGT+TGG | + | chr4.2:46326892-46326911 | MS.gene049770:intron | 25.0% |
| !! | AGAAAACTTGTTTGAAATAG+AGG | + | chr4.2:46329535-46329554 | MS.gene049770:CDS | 25.0% |
| !! | ATAATCAATTCGAGTTCAAA+AGG | - | chr4.2:46327680-46327699 | None:intergenic | 25.0% |
| !! | ATTTCAAACAAGTTTTCTAG+AGG | - | chr4.2:46329533-46329552 | None:intergenic | 25.0% |
| !! | TAATCAATTCGAGTTCAAAA+GGG | - | chr4.2:46327679-46327698 | None:intergenic | 25.0% |
| !! | TTTCTTATGGTTAATTTTGC+AGG | + | chr4.2:46327597-46327616 | MS.gene049770:intron | 25.0% |
| !!! | ACTTATTTTTCTCATATTGG+AGG | + | chr4.2:46328485-46328504 | MS.gene049770:intron | 25.0% |
| !!! | ATTGATTTGAATATGTTTGG+AGG | - | chr4.2:46327897-46327916 | None:intergenic | 25.0% |
| !!! | TACTGATTTTGTGTTTCTTA+TGG | + | chr4.2:46327584-46327603 | MS.gene049770:intron | 25.0% |
| !!! | TTCTTTGCTTTTATTCTTTC+TGG | - | chr4.2:46328768-46328787 | None:intergenic | 25.0% |
| !!! | TTTTGTTTGTTTCCTTGATT+TGG | + | chr4.2:46327028-46327047 | MS.gene049770:intron | 25.0% |
| AAAATGGCGAAGAAATCAAT+TGG | + | chr4.2:46326491-46326510 | MS.gene049770:CDS | 30.0% | |
| AACAGAAACTCAATTACACA+AGG | - | chr4.2:46326955-46326974 | None:intergenic | 30.0% | |
| AATTGCAGAAGAAACTTATG+AGG | + | chr4.2:46329139-46329158 | MS.gene049770:intron | 30.0% | |
| AGTAAAATGATAGAAAGGAG+TGG | + | chr4.2:46327058-46327077 | MS.gene049770:intron | 30.0% | |
| ATTCGTGCATTTCATATCAA+TGG | - | chr4.2:46329203-46329222 | None:intergenic | 30.0% | |
| ATTGAGTTTCTGTTTCAAGA+TGG | + | chr4.2:46326961-46326980 | MS.gene049770:intron | 30.0% | |
| CAAAATATGTCAACGAAGAA+GGG | - | chr4.2:46328678-46328697 | None:intergenic | 30.0% | |
| CATGCGTTAATAGCATTTAA+TGG | + | chr4.2:46329291-46329310 | MS.gene049770:intron | 30.0% | |
| CGTATCACTATATACTTATG+TGG | - | chr4.2:46329234-46329253 | None:intergenic | 30.0% | |
| CTCTAAATATCAAGATGAGA+AGG | + | chr4.2:46329723-46329742 | MS.gene049770:CDS | 30.0% | |
| CTTAATGCGAAAAAGACTTT+CGG | + | chr4.2:46326517-46326536 | MS.gene049770:CDS | 30.0% | |
| CTTCTCATCTTGATATTTAG+AGG | - | chr4.2:46329725-46329744 | None:intergenic | 30.0% | |
| GAAAAGAAAAAGGAATTCTG+AGG | - | chr4.2:46327657-46327676 | None:intergenic | 30.0% | |
| GGTTAATCTTTCCATAAAGA+AGG | - | chr4.2:46328097-46328116 | None:intergenic | 30.0% | |
| GTTCAAAAGGGAAAAGAAAA+AGG | - | chr4.2:46327667-46327686 | None:intergenic | 30.0% | |
| TAATGGAAGACACTAATAGA+GGG | + | chr4.2:46329308-46329327 | MS.gene049770:intron | 30.0% | |
| TATGTGTAAGAAGTAGTGTT+TGG | + | chr4.2:46327963-46327982 | MS.gene049770:intron | 30.0% | |
| TCACTATATACTTATGTGGT+AGG | - | chr4.2:46329230-46329249 | None:intergenic | 30.0% | |
| TCATCATCATTGCTAATTCT+CGG | - | chr4.2:46328598-46328617 | None:intergenic | 30.0% | |
| TCATTGTACTCGATCTAAAA+CGG | - | chr4.2:46328254-46328273 | None:intergenic | 30.0% | |
| TCTCAAATTATTACCTGTGT+CGG | + | chr4.2:46327297-46327316 | MS.gene049770:intron | 30.0% | |
| TCTTTGTCGTATAATTTGGT+TGG | + | chr4.2:46328536-46328555 | MS.gene049770:intron | 30.0% | |
| TGCATCATTATCACAATTAC+AGG | + | chr4.2:46328441-46328460 | MS.gene049770:CDS | 30.0% | |
| TTAATGGAAGACACTAATAG+AGG | + | chr4.2:46329307-46329326 | MS.gene049770:intron | 30.0% | |
| TTACTGTTCAAACCAAATCA+AGG | - | chr4.2:46327043-46327062 | None:intergenic | 30.0% | |
| TTGAGTTTCTGTTTCAAGAT+GGG | + | chr4.2:46326962-46326981 | MS.gene049770:intron | 30.0% | |
| TTGTAACGTGTCAGTAAAAA+TGG | - | chr4.2:46329335-46329354 | None:intergenic | 30.0% | |
| ! | AAAAACAATGTTGTTTGACC+AGG | + | chr4.2:46328617-46328636 | MS.gene049770:CDS | 30.0% |
| ! | CTATTCTTTTCCCTTCTTTA+TGG | + | chr4.2:46328083-46328102 | MS.gene049770:intron | 30.0% |
| !!! | AAGTTTCTCTTTTTTTGCAC+AGG | + | chr4.2:46329459-46329478 | MS.gene049770:intron | 30.0% |
| !!! | CTGTTTGAGTTTTTTTTGAC+AGG | + | chr4.2:46326707-46326726 | MS.gene049770:intron | 30.0% |
| ACATTAGCCATAGATTCACA+TGG | - | chr4.2:46329102-46329121 | None:intergenic | 35.0% | |
| AGAAGTTGCAAATGCAAAAC+TGG | + | chr4.2:46327113-46327132 | MS.gene049770:CDS | 35.0% | |
| ATAGTCCTTGAATTGCGAAT+TGG | + | chr4.2:46328973-46328992 | MS.gene049770:intron | 35.0% | |
| ATCATCATTGCTAATTCTCG+GGG | - | chr4.2:46328596-46328615 | None:intergenic | 35.0% | |
| ATTTAGAGGAACCTCTTTGT+AGG | - | chr4.2:46329711-46329730 | None:intergenic | 35.0% | |
| ATTTGCCAATTCGCAATTCA+AGG | - | chr4.2:46328981-46329000 | None:intergenic | 35.0% | |
| CAATATGCTATCACTCAATC+TGG | + | chr4.2:46329563-46329582 | MS.gene049770:CDS | 35.0% | |
| CATCATCATTGCTAATTCTC+GGG | - | chr4.2:46328597-46328616 | None:intergenic | 35.0% | |
| CCAAATTCAGTGTATCAATG+TGG | + | chr4.2:46328275-46328294 | MS.gene049770:intron | 35.0% | |
| CCACATTGATACACTGAATT+TGG | - | chr4.2:46328278-46328297 | None:intergenic | 35.0% | |
| GAATTTAATCAACCTCCTTG+CGG | + | chr4.2:46326737-46326756 | MS.gene049770:CDS | 35.0% | |
| GCAAAATATGTCAACGAAGA+AGG | - | chr4.2:46328679-46328698 | None:intergenic | 35.0% | |
| GCAATATAGGCCTAAAACAA+CGG | + | chr4.2:46328321-46328340 | MS.gene049770:intron | 35.0% | |
| GCATGTTTCAGTCTACTTTA+GGG | + | chr4.2:46327395-46327414 | MS.gene049770:intron | 35.0% | |
| GTGTAGAAAGTTTGTCTCTT+GGG | + | chr4.2:46327995-46328014 | MS.gene049770:intron | 35.0% | |
| TCAAATAAACAAACACGGAG+TGG | - | chr4.2:46326884-46326903 | None:intergenic | 35.0% | |
| TCTTATGAAGCTTACCAATG+TGG | + | chr4.2:46328201-46328220 | MS.gene049770:intron | 35.0% | |
| TGCATGTTTCAGTCTACTTT+AGG | + | chr4.2:46327394-46327413 | MS.gene049770:intron | 35.0% | |
| TGTGTAGAAAGTTTGTCTCT+TGG | + | chr4.2:46327994-46328013 | MS.gene049770:intron | 35.0% | |
| TGTTTGTGTCTTTGCTTAGT+AGG | + | chr4.2:46327320-46327339 | MS.gene049770:intron | 35.0% | |
| TTGATCGATGCTCACAATTT+CGG | + | chr4.2:46329398-46329417 | MS.gene049770:intron | 35.0% | |
| ! | AATTTTGCAGGAGCTTAACT+TGG | + | chr4.2:46327609-46327628 | MS.gene049770:intron | 35.0% |
| ! | AGGTTAGTTCTTATGCTCAT+TGG | + | chr4.2:46328803-46328822 | MS.gene049770:intron | 35.0% |
| ! | ATTTTGCAGGAGCTTAACTT+GGG | + | chr4.2:46327610-46327629 | MS.gene049770:intron | 35.0% |
| ! | CTTCTTTCAGTTTTCACAGA+TGG | - | chr4.2:46329608-46329627 | None:intergenic | 35.0% |
| ! | GCATTGACACTTCTTATCAA+AGG | + | chr4.2:46327199-46327218 | MS.gene049770:intron | 35.0% |
| ! | GTTTAAGAAATGAAGCACCA+AGG | + | chr4.2:46329639-46329658 | MS.gene049770:CDS | 35.0% |
| !! | AAAAACGGGTTGTTAGAAGA+CGG | - | chr4.2:46328367-46328386 | None:intergenic | 35.0% |
| !!! | TCCACTTTTTCCTGCAAAAA+CGG | - | chr4.2:46328382-46328401 | None:intergenic | 35.0% |
| AACCGCTAACATGAGACTAT+TGG | - | chr4.2:46327152-46327171 | None:intergenic | 40.0% | |
| AAGACGGCCAAAAATAGCAA+AGG | - | chr4.2:46328351-46328370 | None:intergenic | 40.0% | |
| AAGGATACTTTCTATCCGCA+AGG | - | chr4.2:46326755-46326774 | None:intergenic | 40.0% | |
| AAGTGAAGGGTTTACAGATC+AGG | - | chr4.2:46328469-46328488 | None:intergenic | 40.0% | |
| ACTGAAAGAAGAGAAAGCTC+TGG | + | chr4.2:46329617-46329636 | MS.gene049770:CDS | 40.0% | |
| AGACGGCCAAAAATAGCAAA+GGG | - | chr4.2:46328350-46328369 | None:intergenic | 40.0% | |
| AGCACAAATAGTGATGCTTG+AGG | + | chr4.2:46327500-46327519 | MS.gene049770:intron | 40.0% | |
| AGGCCTATATTGCACATTGT+AGG | - | chr4.2:46328314-46328333 | None:intergenic | 40.0% | |
| AGTGGAAAATGTAGTGACTC+AGG | - | chr4.2:46326866-46326885 | None:intergenic | 40.0% | |
| ATAGTGATACGGTATCCAAG+TGG | + | chr4.2:46329243-46329262 | MS.gene049770:intron | 40.0% | |
| ATTCTATGTACAAACGGCCT+AGG | + | chr4.2:46328226-46328245 | MS.gene049770:intron | 40.0% | |
| CACAAATAGTGATGCTTGAG+GGG | + | chr4.2:46327502-46327521 | MS.gene049770:intron | 40.0% | |
| GACAAATATGTTAGGGACTG+TGG | + | chr4.2:46327470-46327489 | MS.gene049770:intron | 40.0% | |
| GCACAAATAGTGATGCTTGA+GGG | + | chr4.2:46327501-46327520 | MS.gene049770:intron | 40.0% | |
| GCAGTGCAGCAATCAAAAAA+AGG | - | chr4.2:46328035-46328054 | None:intergenic | 40.0% | |
| GCCTATATTGCACATTGTAG+GGG | - | chr4.2:46328312-46328331 | None:intergenic | 40.0% | |
| GGAGATAGACACTGAAAAAG+TGG | + | chr4.2:46328399-46328418 | MS.gene049770:CDS | 40.0% | |
| GGCCTATATTGCACATTGTA+GGG | - | chr4.2:46328313-46328332 | None:intergenic | 40.0% | |
| GTCCAATAGTCTCATGTTAG+CGG | + | chr4.2:46327147-46327166 | MS.gene049770:CDS | 40.0% | |
| GTGGCCATTCTATGTACAAA+CGG | + | chr4.2:46328220-46328239 | MS.gene049770:intron | 40.0% | |
| TACCTTGAGGAGTTGTTGAA+TGG | - | chr4.2:46326618-46326637 | None:intergenic | 40.0% | |
| TAGCCATAGATTCACATGGA+AGG | - | chr4.2:46329098-46329117 | None:intergenic | 40.0% | |
| TAGCCTTCCATGTGAATCTA+TGG | + | chr4.2:46329092-46329111 | MS.gene049770:intron | 40.0% | |
| TAGGAGTAGATGTAAGTGCT+AGG | + | chr4.2:46328648-46328667 | MS.gene049770:intron | 40.0% | |
| TAGGCCGTTTGTACATAGAA+TGG | - | chr4.2:46328227-46328246 | None:intergenic | 40.0% | |
| TCCCCTACAATGTGCAATAT+AGG | + | chr4.2:46328308-46328327 | MS.gene049770:intron | 40.0% | |
| TCGTTCAATGAGCTATGCTA+AGG | - | chr4.2:46328832-46328851 | None:intergenic | 40.0% | |
| TGATCGATGCTCACAATTTC+GGG | + | chr4.2:46329399-46329418 | MS.gene049770:intron | 40.0% | |
| TGGAAACAGCTTCAAAATGC+AGG | + | chr4.2:46327794-46327813 | MS.gene049770:CDS | 40.0% | |
| TGGAAGGCTACATGTTCATT+TGG | - | chr4.2:46329082-46329101 | None:intergenic | 40.0% | |
| TGTACATAGAATGGCCACAT+TGG | - | chr4.2:46328218-46328237 | None:intergenic | 40.0% | |
| TTATGGAACTTTGCAGCCAT+TGG | + | chr4.2:46328728-46328747 | MS.gene049770:intron | 40.0% | |
| TTCAATGCCATCACATGTGT+CGG | - | chr4.2:46327266-46327285 | None:intergenic | 40.0% | |
| TTCCATTCAACAACTCCTCA+AGG | + | chr4.2:46326613-46326632 | MS.gene049770:CDS | 40.0% | |
| TTTGATTGCTGCACTGCTTA+AGG | + | chr4.2:46328038-46328057 | MS.gene049770:intron | 40.0% | |
| ! | CGTATAATTTGGTTGGCTCA+AGG | + | chr4.2:46328543-46328562 | MS.gene049770:intron | 40.0% |
| ! | TTTCTAGAGGTTCGTGTACA+TGG | - | chr4.2:46329520-46329539 | None:intergenic | 40.0% |
| ! | TTTTGCACAGGAGAAGTTTG+AGG | + | chr4.2:46329471-46329490 | MS.gene049770:intron | 40.0% |
| !! | ATATTGGAGGCATTGATGGA+TGG | + | chr4.2:46328498-46328517 | MS.gene049770:intron | 40.0% |
| !! | TCTCATATTGGAGGCATTGA+TGG | + | chr4.2:46328494-46328513 | MS.gene049770:intron | 40.0% |
| !! | TTCTAACAACCCGTTTTTGC+AGG | + | chr4.2:46328369-46328388 | MS.gene049770:intron | 40.0% |
| !! | TTTGGAACTCTGGAATCTCA+TGG | - | chr4.2:46328899-46328918 | None:intergenic | 40.0% |
| !! | TTTTGCAGGAGCTTAACTTG+GGG | + | chr4.2:46327611-46327630 | MS.gene049770:intron | 40.0% |
| !! | TTTTGGAAGACCGTTTCGAA+GGG | + | chr4.2:46329667-46329686 | MS.gene049770:CDS | 40.0% |
| !!! | CCACTTTTTCCTGCAAAAAC+GGG | - | chr4.2:46328381-46328400 | None:intergenic | 40.0% |
| AAAGACACAAACACCGACAC+AGG | - | chr4.2:46327313-46327332 | None:intergenic | 45.0% | |
| ACAGTCTAGTGGTTTGACTC+AGG | + | chr4.2:46326812-46326831 | MS.gene049770:intron | 45.0% | |
| AGAGGAACCTCTTTGTAGGA+TGG | - | chr4.2:46329707-46329726 | None:intergenic | 45.0% | |
| CCTCTAGCAGCAGATGTTAA+CGG | - | chr4.2:46329044-46329063 | None:intergenic | 45.0% | |
| CGAACATATGACCATCCACT+TGG | - | chr4.2:46329261-46329280 | None:intergenic | 45.0% | |
| GAAGGTTCCATCCTACAAAG+AGG | + | chr4.2:46329697-46329716 | MS.gene049770:CDS | 45.0% | |
| GATACTTTCTATCCGCAAGG+AGG | - | chr4.2:46326752-46326771 | None:intergenic | 45.0% | |
| GGAAGCAGTAGAAGAACCAA+TGG | - | chr4.2:46328747-46328766 | None:intergenic | 45.0% | |
| GGTCTTCCAAAAGAATGCCT+TGG | - | chr4.2:46329659-46329678 | None:intergenic | 45.0% | |
| TAGCAGCAGATGTTAACGGA+TGG | - | chr4.2:46329040-46329059 | None:intergenic | 45.0% | |
| TGATACGGTATCCAAGTGGA+TGG | + | chr4.2:46329247-46329266 | MS.gene049770:intron | 45.0% | |
| TTCGCGTTGTTACAGTCTAG+TGG | + | chr4.2:46326801-46326820 | MS.gene049770:intron | 45.0% | |
| ! | CACTGCAGCATGAACTTTTG+TGG | + | chr4.2:46327754-46327773 | MS.gene049770:CDS | 45.0% |
| ! | GCAGCATGAACTTTTGTGGA+GGG | + | chr4.2:46327758-46327777 | MS.gene049770:CDS | 45.0% |
| ! | TGCAGCATGAACTTTTGTGG+AGG | + | chr4.2:46327757-46327776 | MS.gene049770:CDS | 45.0% |
| ! | TGGAGGGCTGCTTTGATTAA+TGG | + | chr4.2:46327774-46327793 | MS.gene049770:CDS | 45.0% |
| !! | CAAAGGGAGACCGTTGTTTT+AGG | - | chr4.2:46328334-46328353 | None:intergenic | 45.0% |
| !! | CCCGTTTTTGCAGGAAAAAG+TGG | + | chr4.2:46328378-46328397 | MS.gene049770:intron | 45.0% |
| !! | CTTTTGGAAGACCGTTTCGA+AGG | + | chr4.2:46329666-46329685 | MS.gene049770:CDS | 45.0% |
| !! | GAAGCACCAAGGCATTCTTT+TGG | + | chr4.2:46329650-46329669 | MS.gene049770:CDS | 45.0% |
| !! | GCCATTTTCTGATTCTCCGT+CGG | - | chr4.2:46326479-46326498 | None:intergenic | 45.0% |
| !!! | CGGTCTCCCTTTGCTATTTT+TGG | + | chr4.2:46328341-46328360 | MS.gene049770:intron | 45.0% |
| !!! | TTCATATTAAATTATTATTT+TGG | - | chr4.2:46328917-46328936 | None:intergenic | 5.0% |
| CCGTTAACATCTGCTGCTAG+AGG | + | chr4.2:46329041-46329060 | MS.gene049770:intron | 50.0% | |
| GAGACATTCTGCTGCGTCAA+AGG | + | chr4.2:46329493-46329512 | MS.gene049770:CDS | 50.0% | |
| GCCGACGGAGAATCAGAAAA+TGG | + | chr4.2:46326475-46326494 | MS.gene049770:CDS | 50.0% | |
| TTCGACACCGACACATGTGA+TGG | + | chr4.2:46327256-46327275 | MS.gene049770:intron | 50.0% | |
| TTCTCAGCTGCCCTTCGAAA+CGG | - | chr4.2:46329680-46329699 | None:intergenic | 50.0% | |
| ! | CTCGATCTAAAACGGCTCCT+AGG | - | chr4.2:46328246-46328265 | None:intergenic | 50.0% |
| GTGATGCTTGAGGGGCTGAA+TGG | + | chr4.2:46327510-46327529 | MS.gene049770:intron | 55.0% | |
| GTTTCGAAGGGCAGCTGAGA+AGG | + | chr4.2:46329679-46329698 | MS.gene049770:CDS | 55.0% | |
| GTTTGACCAGGAGACGCGTT+AGG | + | chr4.2:46328629-46328648 | MS.gene049770:CDS | 55.0% | |
| TCTACTCCTAACGCGTCTCC+TGG | - | chr4.2:46328638-46328657 | None:intergenic | 55.0% | |
| ! | GCAGGAGCTTAACTTGGGGA+GGG | + | chr4.2:46327615-46327634 | MS.gene049770:intron | 55.0% |
| ! | TGCAGGAGCTTAACTTGGGG+AGG | + | chr4.2:46327614-46327633 | MS.gene049770:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 46326473 | 46329754 | 46326473 | ID=MS.gene049770 |
| chr4.2 | mRNA | 46326473 | 46329754 | 46326473 | ID=MS.gene049770.t1;Parent=MS.gene049770 |
| chr4.2 | exon | 46326473 | 46326634 | 46326473 | ID=MS.gene049770.t1.exon1;Parent=MS.gene049770.t1 |
| chr4.2 | CDS | 46326473 | 46326634 | 46326473 | ID=cds.MS.gene049770.t1;Parent=MS.gene049770.t1 |
| chr4.2 | exon | 46326729 | 46326766 | 46326729 | ID=MS.gene049770.t1.exon2;Parent=MS.gene049770.t1 |
| chr4.2 | CDS | 46326729 | 46326766 | 46326729 | ID=cds.MS.gene049770.t1;Parent=MS.gene049770.t1 |
| chr4.2 | exon | 46327060 | 46327168 | 46327060 | ID=MS.gene049770.t1.exon3;Parent=MS.gene049770.t1 |
| chr4.2 | CDS | 46327060 | 46327168 | 46327060 | ID=cds.MS.gene049770.t1;Parent=MS.gene049770.t1 |
| chr4.2 | exon | 46327619 | 46327642 | 46327619 | ID=MS.gene049770.t1.exon4;Parent=MS.gene049770.t1 |
| chr4.2 | CDS | 46327619 | 46327642 | 46327619 | ID=cds.MS.gene049770.t1;Parent=MS.gene049770.t1 |
| chr4.2 | exon | 46327747 | 46327815 | 46327747 | ID=MS.gene049770.t1.exon5;Parent=MS.gene049770.t1 |
| chr4.2 | CDS | 46327747 | 46327815 | 46327747 | ID=cds.MS.gene049770.t1;Parent=MS.gene049770.t1 |
| chr4.2 | exon | 46328391 | 46328462 | 46328391 | ID=MS.gene049770.t1.exon6;Parent=MS.gene049770.t1 |
| chr4.2 | CDS | 46328391 | 46328462 | 46328391 | ID=cds.MS.gene049770.t1;Parent=MS.gene049770.t1 |
| chr4.2 | exon | 46328565 | 46328658 | 46328565 | ID=MS.gene049770.t1.exon7;Parent=MS.gene049770.t1 |
| chr4.2 | CDS | 46328565 | 46328658 | 46328565 | ID=cds.MS.gene049770.t1;Parent=MS.gene049770.t1 |
| chr4.2 | exon | 46328744 | 46328804 | 46328744 | ID=MS.gene049770.t1.exon8;Parent=MS.gene049770.t1 |
| chr4.2 | CDS | 46328744 | 46328804 | 46328744 | ID=cds.MS.gene049770.t1;Parent=MS.gene049770.t1 |
| chr4.2 | exon | 46329481 | 46329754 | 46329481 | ID=MS.gene049770.t1.exon9;Parent=MS.gene049770.t1 |
| chr4.2 | CDS | 46329481 | 46329754 | 46329481 | ID=cds.MS.gene049770.t1;Parent=MS.gene049770.t1 |
| Gene Sequence |
| Protein sequence |
