Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09189.t1 | XP_013446527.1 | 97.5 | 857 | 20 | 1 | 57 | 913 | 57 | 912 | 0.00E+00 | 1553.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09189.t1 | Q0WVW7 | 55.5 | 839 | 331 | 9 | 95 | 913 | 90 | 906 | 2.0e-246 | 853.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09189.t1 | A0A072TSR0 | 97.5 | 857 | 20 | 1 | 57 | 913 | 57 | 912 | 0.0e+00 | 1553.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049397 | MS.gene09189 | 0.810922 | 9.06E-51 | -1.69E-46 |
MS.gene049989 | MS.gene09189 | 0.829277 | 5.63E-55 | -1.69E-46 |
MS.gene050297 | MS.gene09189 | 0.822958 | 1.79E-53 | -1.69E-46 |
MS.gene052367 | MS.gene09189 | 0.802755 | 4.83E-49 | -1.69E-46 |
MS.gene053416 | MS.gene09189 | 0.801811 | 7.55E-49 | -1.69E-46 |
MS.gene056041 | MS.gene09189 | 0.812137 | 4.93E-51 | -1.69E-46 |
MS.gene056526 | MS.gene09189 | 0.819625 | 1.05E-52 | -1.69E-46 |
MS.gene058196 | MS.gene09189 | 0.825722 | 4.01E-54 | -1.69E-46 |
MS.gene058197 | MS.gene09189 | 0.80712 | 5.90E-50 | -1.69E-46 |
MS.gene058198 | MS.gene09189 | 0.802599 | 5.20E-49 | -1.69E-46 |
MS.gene059300 | MS.gene09189 | 0.804641 | 1.96E-49 | -1.69E-46 |
MS.gene060473 | MS.gene09189 | 0.841262 | 5.29E-58 | -1.69E-46 |
MS.gene060565 | MS.gene09189 | 0.841884 | 3.62E-58 | -1.69E-46 |
MS.gene061260 | MS.gene09189 | 0.830301 | 3.17E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09189.t1 | MTR_8g080160 | 96.824 | 913 | 28 | 1 | 1 | 913 | 1 | 912 | 0.0 | 1819 |
MS.gene09189.t1 | MTR_2g042440 | 39.560 | 364 | 196 | 9 | 260 | 607 | 25 | 380 | 4.00e-61 | 221 |
MS.gene09189.t1 | MTR_2g042440 | 39.560 | 364 | 196 | 9 | 260 | 607 | 25 | 380 | 4.39e-61 | 221 |
MS.gene09189.t1 | MTR_2g006440 | 36.338 | 355 | 214 | 6 | 270 | 616 | 401 | 751 | 6.04e-60 | 223 |
MS.gene09189.t1 | MTR_1g083840 | 37.037 | 351 | 203 | 9 | 271 | 609 | 195 | 539 | 3.42e-59 | 213 |
MS.gene09189.t1 | MTR_5g026590 | 35.224 | 335 | 190 | 8 | 272 | 597 | 84 | 400 | 7.42e-51 | 191 |
MS.gene09189.t1 | MTR_3g063040 | 35.942 | 345 | 200 | 9 | 263 | 597 | 2 | 335 | 5.07e-50 | 191 |
MS.gene09189.t1 | MTR_1g083250 | 32.051 | 234 | 140 | 7 | 250 | 469 | 135 | 363 | 7.88e-26 | 114 |
MS.gene09189.t1 | MTR_1g083250 | 45.545 | 101 | 55 | 0 | 497 | 597 | 510 | 610 | 3.53e-21 | 99.4 |
MS.gene09189.t1 | MTR_1g083250 | 32.051 | 234 | 140 | 7 | 250 | 469 | 135 | 363 | 1.61e-25 | 114 |
MS.gene09189.t1 | MTR_1g083250 | 33.679 | 193 | 106 | 5 | 497 | 669 | 510 | 700 | 2.14e-21 | 100 |
MS.gene09189.t1 | MTR_1g083250 | 32.051 | 234 | 140 | 7 | 250 | 469 | 135 | 363 | 1.93e-25 | 113 |
MS.gene09189.t1 | MTR_1g083250 | 33.679 | 193 | 106 | 5 | 497 | 669 | 510 | 700 | 2.06e-21 | 100 |
MS.gene09189.t1 | MTR_5g027840 | 24.157 | 356 | 231 | 9 | 268 | 597 | 114 | 456 | 1.71e-16 | 84.0 |
MS.gene09189.t1 | MTR_2g100230 | 25.904 | 332 | 221 | 10 | 282 | 597 | 122 | 444 | 8.31e-16 | 81.6 |
MS.gene09189.t1 | MTR_3g467550 | 25.356 | 351 | 219 | 11 | 282 | 603 | 112 | 448 | 1.82e-14 | 77.8 |
MS.gene09189.t1 | MTR_3g467550 | 25.356 | 351 | 219 | 11 | 282 | 603 | 143 | 479 | 1.98e-14 | 77.8 |
MS.gene09189.t1 | MTR_2g032630 | 23.188 | 345 | 239 | 10 | 274 | 602 | 514 | 848 | 4.26e-14 | 77.4 |
MS.gene09189.t1 | MTR_4g134170 | 23.037 | 382 | 246 | 14 | 267 | 609 | 296 | 668 | 1.14e-13 | 75.5 |
MS.gene09189.t1 | MTR_6g005550 | 24.501 | 351 | 223 | 13 | 274 | 600 | 183 | 515 | 4.85e-13 | 73.6 |
MS.gene09189.t1 | MTR_4g105100 | 23.894 | 339 | 219 | 11 | 282 | 597 | 228 | 550 | 8.69e-13 | 72.8 |
MS.gene09189.t1 | MTR_1g095810 | 33.981 | 103 | 68 | 0 | 496 | 598 | 398 | 500 | 1.68e-12 | 71.6 |
MS.gene09189.t1 | MTR_6g033070 | 24.523 | 367 | 222 | 15 | 267 | 600 | 149 | 493 | 1.88e-12 | 71.2 |
MS.gene09189.t1 | MTR_2g438110 | 29.231 | 130 | 90 | 1 | 493 | 620 | 272 | 401 | 2.16e-12 | 70.5 |
MS.gene09189.t1 | MTR_7g100820 | 23.973 | 438 | 288 | 14 | 207 | 615 | 76 | 497 | 1.31e-11 | 68.9 |
MS.gene09189.t1 | MTR_3g083690 | 22.316 | 354 | 243 | 10 | 282 | 608 | 171 | 519 | 2.52e-11 | 67.8 |
MS.gene09189.t1 | MTR_1g026830 | 31.356 | 118 | 76 | 1 | 481 | 598 | 390 | 502 | 3.76e-11 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene09189.t1 | AT1G27880 | 54.118 | 935 | 376 | 14 | 3 | 913 | 1 | 906 | 0.0 | 933 |
MS.gene09189.t1 | AT1G27880 | 53.547 | 874 | 353 | 14 | 3 | 852 | 1 | 845 | 0.0 | 835 |
MS.gene09189.t1 | AT4G35740 | 36.429 | 420 | 224 | 12 | 260 | 644 | 19 | 430 | 6.73e-63 | 226 |
MS.gene09189.t1 | AT1G10930 | 36.798 | 356 | 211 | 7 | 270 | 616 | 446 | 796 | 1.55e-59 | 222 |
MS.gene09189.t1 | AT3G05740 | 34.973 | 366 | 219 | 9 | 254 | 609 | 103 | 459 | 3.54e-58 | 209 |
MS.gene09189.t1 | AT1G31360 | 38.053 | 339 | 192 | 8 | 272 | 597 | 84 | 417 | 3.66e-58 | 209 |
MS.gene09189.t1 | AT1G31360 | 38.053 | 339 | 192 | 8 | 272 | 597 | 84 | 417 | 3.66e-58 | 209 |
MS.gene09189.t1 | AT1G31360 | 38.053 | 339 | 192 | 8 | 272 | 597 | 84 | 417 | 5.36e-58 | 209 |
MS.gene09189.t1 | AT1G31360 | 38.053 | 339 | 192 | 8 | 272 | 597 | 84 | 417 | 1.40e-57 | 208 |
MS.gene09189.t1 | AT1G31360 | 38.053 | 339 | 192 | 8 | 272 | 597 | 84 | 417 | 3.35e-57 | 209 |
MS.gene09189.t1 | AT3G05740 | 34.973 | 366 | 219 | 9 | 254 | 609 | 188 | 544 | 3.78e-57 | 208 |
MS.gene09189.t1 | AT1G31360 | 38.053 | 339 | 192 | 8 | 272 | 597 | 84 | 417 | 5.66e-57 | 209 |
MS.gene09189.t1 | AT1G31360 | 38.053 | 339 | 192 | 8 | 272 | 597 | 118 | 451 | 7.79e-57 | 209 |
MS.gene09189.t1 | AT1G31360 | 37.710 | 297 | 167 | 8 | 314 | 597 | 1 | 292 | 2.66e-44 | 170 |
MS.gene09189.t1 | AT4G35740 | 32.840 | 338 | 185 | 11 | 341 | 644 | 8 | 337 | 7.46e-38 | 151 |
MS.gene09189.t1 | AT5G27680 | 32.569 | 218 | 124 | 7 | 268 | 470 | 29 | 238 | 6.96e-25 | 111 |
MS.gene09189.t1 | AT5G27680 | 34.737 | 190 | 102 | 5 | 497 | 665 | 371 | 559 | 3.17e-21 | 100 |
MS.gene09189.t1 | AT5G27680 | 32.569 | 218 | 124 | 7 | 268 | 470 | 159 | 368 | 9.42e-25 | 111 |
MS.gene09189.t1 | AT5G27680 | 32.569 | 218 | 124 | 7 | 268 | 470 | 159 | 368 | 1.19e-24 | 111 |
MS.gene09189.t1 | AT5G27680 | 34.737 | 190 | 102 | 5 | 497 | 665 | 501 | 689 | 3.91e-21 | 100 |
MS.gene09189.t1 | AT5G27680 | 32.569 | 218 | 124 | 7 | 268 | 470 | 159 | 368 | 1.19e-24 | 111 |
MS.gene09189.t1 | AT5G27680 | 34.737 | 190 | 102 | 5 | 497 | 665 | 501 | 689 | 3.91e-21 | 100 |
MS.gene09189.t1 | AT5G27680 | 32.569 | 218 | 124 | 7 | 268 | 470 | 159 | 368 | 1.19e-24 | 111 |
MS.gene09189.t1 | AT5G27680 | 34.737 | 190 | 102 | 5 | 497 | 665 | 501 | 689 | 3.91e-21 | 100 |
MS.gene09189.t1 | AT5G27680 | 32.569 | 218 | 124 | 7 | 268 | 470 | 159 | 368 | 1.19e-24 | 111 |
MS.gene09189.t1 | AT5G27680 | 34.737 | 190 | 102 | 5 | 497 | 665 | 501 | 689 | 3.91e-21 | 100 |
MS.gene09189.t1 | AT3G01540 | 24.000 | 350 | 232 | 11 | 271 | 600 | 174 | 509 | 5.99e-15 | 79.7 |
MS.gene09189.t1 | AT5G63120 | 23.478 | 345 | 229 | 9 | 274 | 597 | 184 | 514 | 6.41e-15 | 79.3 |
MS.gene09189.t1 | AT3G01540 | 24.000 | 350 | 232 | 11 | 271 | 600 | 174 | 509 | 6.95e-15 | 79.3 |
MS.gene09189.t1 | AT3G01540 | 24.000 | 350 | 232 | 11 | 271 | 600 | 174 | 509 | 6.95e-15 | 79.3 |
MS.gene09189.t1 | AT3G01540 | 24.000 | 350 | 232 | 11 | 271 | 600 | 174 | 509 | 6.95e-15 | 79.3 |
MS.gene09189.t1 | AT4G33370 | 24.277 | 346 | 217 | 10 | 282 | 598 | 124 | 453 | 8.94e-15 | 79.0 |
MS.gene09189.t1 | AT1G55150 | 25.538 | 372 | 245 | 10 | 245 | 597 | 90 | 448 | 1.33e-14 | 78.2 |
MS.gene09189.t1 | AT1G31970 | 25.397 | 378 | 243 | 11 | 247 | 597 | 105 | 470 | 1.50e-14 | 78.2 |
MS.gene09189.t1 | AT1G55150 | 26.300 | 327 | 210 | 9 | 290 | 597 | 159 | 473 | 2.31e-14 | 77.4 |
MS.gene09189.t1 | AT5G14610 | 23.184 | 358 | 235 | 13 | 267 | 600 | 171 | 512 | 1.81e-13 | 75.1 |
MS.gene09189.t1 | AT5G14610 | 23.184 | 358 | 235 | 13 | 267 | 600 | 179 | 520 | 1.87e-13 | 74.7 |
MS.gene09189.t1 | AT5G14610 | 23.184 | 358 | 235 | 13 | 267 | 600 | 171 | 512 | 1.89e-13 | 74.7 |
MS.gene09189.t1 | AT5G14610 | 22.923 | 349 | 231 | 11 | 274 | 600 | 248 | 580 | 4.80e-13 | 73.6 |
MS.gene09189.t1 | AT5G14610 | 23.209 | 349 | 230 | 12 | 274 | 600 | 49 | 381 | 8.32e-13 | 72.4 |
MS.gene09189.t1 | AT5G14610 | 23.209 | 349 | 230 | 12 | 274 | 600 | 49 | 381 | 8.32e-13 | 72.4 |
MS.gene09189.t1 | AT5G51280 | 33.051 | 118 | 74 | 1 | 481 | 598 | 390 | 502 | 1.84e-12 | 71.6 |
MS.gene09189.t1 | AT3G19760 | 30.769 | 130 | 88 | 1 | 493 | 620 | 274 | 403 | 2.43e-12 | 70.5 |
MS.gene09189.t1 | AT2G33730 | 22.162 | 370 | 232 | 12 | 282 | 609 | 340 | 695 | 3.40e-12 | 70.9 |
Find 188 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAGTAAGGGTTTACGAATTT+TGG | 0.198750 | 4.2:+14995545 | None:intergenic |
CAATTGCCTCCGCTCATTTC+GGG | 0.221496 | 4.2:-14994865 | MS.gene09189:CDS |
ATGCTTGCAAAGGATAATAT+TGG | 0.238086 | 4.2:-14989312 | MS.gene09189:CDS |
TTCTTGTTCGGGAATAATTT+CGG | 0.253382 | 4.2:+14995701 | None:intergenic |
CAGCCTACCCTTATACAATA+TGG | 0.255516 | 4.2:-14988782 | MS.gene09189:CDS |
CAGCAATAGCAGAAACCTTT+TGG | 0.258260 | 4.2:+14991394 | None:intergenic |
ACATCTCATCATCATAAAAT+AGG | 0.269389 | 4.2:+14992598 | None:intergenic |
GTATACCAAGATAGACTTTA+AGG | 0.273733 | 4.2:-14988413 | MS.gene09189:CDS |
CATAGTATACTGCAAATTTC+AGG | 0.277071 | 4.2:-14993880 | MS.gene09189:intron |
GAAAATTTGGTAGTGGTAAA+AGG | 0.277686 | 4.2:-14995317 | MS.gene09189:CDS |
CCGATAGTCAAGGCACTAAA+AGG | 0.286757 | 4.2:-14995420 | MS.gene09189:CDS |
TGAAGCTTCTGATGAGAATT+TGG | 0.290524 | 4.2:-14995097 | MS.gene09189:CDS |
TTTGGAGAATGAAATTGATT+TGG | 0.292930 | 4.2:+14995563 | None:intergenic |
ATAATATTGGATTACTTTGC+TGG | 0.294888 | 4.2:-14989299 | MS.gene09189:CDS |
ACAATTGCCTCCGCTCATTT+CGG | 0.302918 | 4.2:-14994866 | MS.gene09189:CDS |
TCGACTAATCCAAACCTTTA+GGG | 0.310744 | 4.2:+14990981 | None:intergenic |
TATGGGGTAAAACCCATTTC+TGG | 0.313223 | 4.2:-14988764 | MS.gene09189:intron |
AACTGATTTGTTAATTCAAC+TGG | 0.319696 | 4.2:+14991009 | None:intergenic |
GGCCTACTGTTATAGGATTC+TGG | 0.324072 | 4.2:-14989911 | MS.gene09189:CDS |
ACACTAGCACCTATCAAATT+AGG | 0.325281 | 4.2:+14995450 | None:intergenic |
TCTTGTTCGGGAATAATTTC+GGG | 0.325867 | 4.2:+14995702 | None:intergenic |
AGGACATGGCCTACTGTTAT+AGG | 0.330949 | 4.2:-14989918 | MS.gene09189:CDS |
TTATTCTAAATGCGCACTTA+AGG | 0.353628 | 4.2:-14994088 | MS.gene09189:CDS |
ATCAACAACCGGTTCGGCTT+CGG | 0.359769 | 4.2:+14995509 | None:intergenic |
TACGCTTGTTGTTAGTCCTT+TGG | 0.368040 | 4.2:-14994914 | MS.gene09189:CDS |
GGCTGTGTCCCTTGCCCAAA+AGG | 0.373276 | 4.2:-14991409 | MS.gene09189:CDS |
GAAACTGGAAGAGGTGGTTT+TGG | 0.373861 | 4.2:+14995786 | None:intergenic |
ACATACTCTTCCAGACTTCC+AGG | 0.383363 | 4.2:+14992755 | None:intergenic |
TATTCTAAATGCGCACTTAA+GGG | 0.388305 | 4.2:-14994087 | MS.gene09189:CDS |
GGAAGTTTCTAGATTGAGTA+AGG | 0.388344 | 4.2:+14995530 | None:intergenic |
GGGTTTAGGAAGGGGTTTAT+TGG | 0.388852 | 4.2:+14995725 | None:intergenic |
AAGGGGAAAGATTCTTGTTC+GGG | 0.395512 | 4.2:+14995690 | None:intergenic |
TTACAGTTTACCTGGAAGTC+TGG | 0.398808 | 4.2:-14992765 | MS.gene09189:CDS |
GGTGAACTTGGTTGTTGTCT+TGG | 0.401617 | 4.2:+14995816 | None:intergenic |
GCGATTAAGAATGTGCTTGC+TGG | 0.402170 | 4.2:-14995018 | MS.gene09189:CDS |
TTTGTGAAATTGAATTTGAA+TGG | 0.407525 | 4.2:-14995381 | MS.gene09189:CDS |
AAGAAACATCCTAATTTGAT+AGG | 0.411502 | 4.2:-14995459 | MS.gene09189:CDS |
AATATCCAGGGCAGACATAA+TGG | 0.413104 | 4.2:+14994124 | None:intergenic |
GAGTGAGAAGATGAAGTTGA+AGG | 0.417070 | 4.2:+14995615 | None:intergenic |
AAATCAGTTGTATGCCCTAA+AGG | 0.419124 | 4.2:-14990995 | MS.gene09189:intron |
GTTGTTGCAACTGTGGCATT+TGG | 0.419325 | 4.2:-14993241 | MS.gene09189:CDS |
TTCTGTCTGTTATCTCTGGT+GGG | 0.425312 | 4.2:-14994430 | MS.gene09189:CDS |
GAATTTCTGTCTGTTATCTC+TGG | 0.426044 | 4.2:-14994434 | MS.gene09189:CDS |
AGCCTACCCTTATACAATAT+GGG | 0.426403 | 4.2:-14988781 | MS.gene09189:CDS |
TTTCCTGCGGGCAGATATAA+AGG | 0.426465 | 4.2:-14988984 | MS.gene09189:intron |
GCTTCGTCAAGGCACAATAA+AGG | 0.426914 | 4.2:-14994701 | MS.gene09189:intron |
TAGAAGTAAACGTATAAAAT+CGG | 0.428317 | 4.2:-14995253 | MS.gene09189:CDS |
AGAAACTTCCGAAGCCGAAC+CGG | 0.431878 | 4.2:-14995517 | MS.gene09189:CDS |
AGATATTACACGATGGTTAT+CGG | 0.435170 | 4.2:-14989857 | MS.gene09189:CDS |
GTGAGGGGATGGAAGGGAAG+GGG | 0.436156 | 4.2:+14995673 | None:intergenic |
TTTCACAAAATTTCCTTCTC+CGG | 0.436617 | 4.2:+14995395 | None:intergenic |
TTTCTGTCTGTTATCTCTGG+TGG | 0.437888 | 4.2:-14994431 | MS.gene09189:CDS |
TGCAGAATCAACAACCGGTT+CGG | 0.440717 | 4.2:+14995503 | None:intergenic |
CCCATGTCATTTGCCACAGT+TGG | 0.444192 | 4.2:+14991039 | None:intergenic |
TGATGAGGAGGAGGATGGTA+TGG | 0.445277 | 4.2:-14995208 | MS.gene09189:CDS |
AAGTGAGGGGATGGAAGGGA+AGG | 0.445403 | 4.2:+14995671 | None:intergenic |
ATCGGAAGTTGAAAGTTGTA+AGG | 0.447577 | 4.2:-14989839 | MS.gene09189:intron |
CATATTGTATAAGGGTAGGC+TGG | 0.448678 | 4.2:+14988783 | None:intergenic |
AAGTTGTTGAAATTGATTCA+TGG | 0.451160 | 4.2:-14995072 | MS.gene09189:CDS |
ATCATAAAATAGGTGACAAT+AGG | 0.453000 | 4.2:+14992608 | None:intergenic |
GGACAACCTCCCATCCCTTC+CGG | 0.453112 | 4.2:+14992629 | None:intergenic |
GGACTAGATAAAAGAGATGT+TGG | 0.458565 | 4.2:-14993214 | MS.gene09189:CDS |
CACCACCTTAAAGTCTATCT+TGG | 0.460065 | 4.2:+14988408 | None:intergenic |
TGTTGAGAATGCAAAGCAAC+AGG | 0.462500 | 4.2:-14995184 | MS.gene09189:CDS |
CGCTCTCCTAAGCAGTGCTC+AGG | 0.462819 | 4.2:-14994842 | MS.gene09189:intron |
GGCTACGTACAGGAGTTGTT+TGG | 0.463664 | 4.2:-14993406 | MS.gene09189:CDS |
GAAGGGGAAAGATTCTTGTT+CGG | 0.466450 | 4.2:+14995689 | None:intergenic |
ATAGGACGTGCCGGAAGGGA+TGG | 0.469051 | 4.2:-14992639 | MS.gene09189:CDS |
GTTCGTTGTCGGATGTTGAA+AGG | 0.469108 | 4.2:+14995648 | None:intergenic |
AATTGATTTGGAGAAGAATC+CGG | 0.470308 | 4.2:+14995575 | None:intergenic |
AATAGTAATGGCAGCAATAG+TGG | 0.470939 | 4.2:-14995285 | MS.gene09189:CDS |
TGCAACTGTGGCATTTGGCA+TGG | 0.471083 | 4.2:-14993236 | MS.gene09189:CDS |
AGATCCGTCGGAGTCTGAAT+CGG | 0.477155 | 4.2:+14995857 | None:intergenic |
AAAGGAAGTGAGGGGATGGA+AGG | 0.478336 | 4.2:+14995666 | None:intergenic |
AGTGAGGGGATGGAAGGGAA+GGG | 0.479047 | 4.2:+14995672 | None:intergenic |
AGAAATAACTTATGAAATGA+AGG | 0.481059 | 4.2:-14989938 | MS.gene09189:CDS |
ATTACCCTCGCAACAGCTCT+TGG | 0.487754 | 4.2:+14988822 | None:intergenic |
TCTTCATTCAAGAATCGCTC+TGG | 0.488566 | 4.2:+14994455 | None:intergenic |
AAGGAAGTGAGGGGATGGAA+GGG | 0.488949 | 4.2:+14995667 | None:intergenic |
ATATCAAACCTGCGTGAAGC+AGG | 0.492622 | 4.2:+14992363 | None:intergenic |
GAATGGGCATTGTAGGAGAT+AGG | 0.495642 | 4.2:-14992657 | MS.gene09189:intron |
TAGGACGTGCCGGAAGGGAT+GGG | 0.496615 | 4.2:-14992638 | MS.gene09189:CDS |
GCAACTGTGGCATTTGGCAT+GGG | 0.498488 | 4.2:-14993235 | MS.gene09189:CDS |
GCTTGTTGTTAGTCCTTTGG+TGG | 0.500189 | 4.2:-14994911 | MS.gene09189:CDS |
TTTGGCGGTGATGGTGAACT+TGG | 0.500420 | 4.2:+14995804 | None:intergenic |
CGATTAAGAATGTGCTTGCT+GGG | 0.501188 | 4.2:-14995017 | MS.gene09189:CDS |
GAGCGTCAGACGTTCGTTGT+CGG | 0.501622 | 4.2:+14995637 | None:intergenic |
TTGTGAAATTGAATTTGAAT+GGG | 0.503178 | 4.2:-14995380 | MS.gene09189:CDS |
AGATGCCATTATGTCTGCCC+TGG | 0.503557 | 4.2:-14994129 | MS.gene09189:CDS |
TTATAGAATGAAAGACCTAC+TGG | 0.506852 | 4.2:-14993943 | MS.gene09189:intron |
AATCAACCTGAGCACTGCTT+AGG | 0.507078 | 4.2:+14994836 | None:intergenic |
AACAGGAAAAGAAGAATGGT+TGG | 0.514174 | 4.2:-14995167 | MS.gene09189:CDS |
TCCAACTGTGGCAAATGACA+TGG | 0.515681 | 4.2:-14991040 | MS.gene09189:CDS |
GCACTAAAAGGCGCCGGAGA+AGG | 0.515717 | 4.2:-14995408 | MS.gene09189:CDS |
GTTGAAAGGAAGTGAGGGGA+TGG | 0.516695 | 4.2:+14995662 | None:intergenic |
GGTGGTGATGGAAGCAGCTA+AGG | 0.525244 | 4.2:-14988392 | MS.gene09189:CDS |
AATTGAATTTGAATGGGAAG+AGG | 0.525991 | 4.2:-14995374 | MS.gene09189:CDS |
GATAGACTTTAAGGTGGTGA+TGG | 0.527217 | 4.2:-14988404 | MS.gene09189:CDS |
GCAAGAAAATTGATCAAAGC+AGG | 0.527941 | 4.2:-14989256 | MS.gene09189:intron |
GAACTTGGTTGTTGTCTTGG+CGG | 0.531364 | 4.2:+14995819 | None:intergenic |
GGAGAAGAATCCGGCAGGGA+GGG | 0.536997 | 4.2:+14995584 | None:intergenic |
CGGATGTTGAAAGGAAGTGA+GGG | 0.537562 | 4.2:+14995657 | None:intergenic |
CTATTGCTGTGATTCTGAAA+AGG | 0.538068 | 4.2:-14991380 | MS.gene09189:intron |
TTGTTTGAAACTGGAAGAGG+TGG | 0.539207 | 4.2:+14995780 | None:intergenic |
ACAGGAAAAGAAGAATGGTT+GGG | 0.539988 | 4.2:-14995166 | MS.gene09189:CDS |
CCTGCTGACAAAAGCTCCTG+TGG | 0.542681 | 4.2:-14992411 | MS.gene09189:CDS |
TCATAGTGGTATTTCTGCAA+AGG | 0.548833 | 4.2:-14993434 | MS.gene09189:CDS |
CTTCATAAGAGTCTTAATGT+AGG | 0.549838 | 4.2:-14994194 | MS.gene09189:CDS |
GATTTGTGCAAGGAATATCC+AGG | 0.550259 | 4.2:+14994111 | None:intergenic |
TTATTGTGCCTTGACGAAGC+TGG | 0.551129 | 4.2:+14994704 | None:intergenic |
GTAATTCATTACAGTTTACC+TGG | 0.551307 | 4.2:-14992773 | MS.gene09189:CDS |
AAATGAATGCAAAGTGTTGG+AGG | 0.552542 | 4.2:-14995142 | MS.gene09189:CDS |
AAAGGAACGTGGCTACGTAC+AGG | 0.554701 | 4.2:-14993416 | MS.gene09189:CDS |
AACTTCGTAGTCTAATGTAC+AGG | 0.555989 | 4.2:-14992569 | MS.gene09189:intron |
TCGGATGTTGAAAGGAAGTG+AGG | 0.557472 | 4.2:+14995656 | None:intergenic |
TTCAGATCTGAAAATAAGCA+CGG | 0.562689 | 4.2:-14991081 | MS.gene09189:intron |
ATATTGTATAAGGGTAGGCT+GGG | 0.562876 | 4.2:+14988784 | None:intergenic |
CGATGATGATGATGAGGAGG+AGG | 0.563127 | 4.2:-14995217 | MS.gene09189:CDS |
GTCAAGGCACTAAAAGGCGC+CGG | 0.563462 | 4.2:-14995414 | MS.gene09189:CDS |
ATCATTTAGAGTTATCATAG+TGG | 0.565678 | 4.2:-14993448 | MS.gene09189:intron |
AAGCAACAGGAAAAGAAGAA+TGG | 0.566070 | 4.2:-14995171 | MS.gene09189:CDS |
GATGAGGAGGAGGATGGTAT+GGG | 0.566294 | 4.2:-14995207 | MS.gene09189:CDS |
CATATGCAGTCGTTTCCTGC+GGG | 0.566507 | 4.2:-14988996 | MS.gene09189:intron |
AGGCGATGATGATGATGAGG+AGG | 0.566831 | 4.2:-14995220 | MS.gene09189:CDS |
ATAAAATCGGAACACAAAGA+AGG | 0.567266 | 4.2:-14995240 | MS.gene09189:CDS |
TTTGAATGATAACAACATCA+AGG | 0.569180 | 4.2:-14993563 | MS.gene09189:CDS |
GGAAAATGAATGCAAAGTGT+TGG | 0.569609 | 4.2:-14995145 | MS.gene09189:CDS |
TCTATCGAAACCCTCCCTGC+CGG | 0.570984 | 4.2:-14995594 | MS.gene09189:CDS |
GCTCTGAGTCTCATGAATGA+AGG | 0.573682 | 4.2:+14994224 | None:intergenic |
ATCAATAACAACAAGTGAGA+CGG | 0.574473 | 4.2:+14994403 | None:intergenic |
ACCCCATATTGTATAAGGGT+AGG | 0.574497 | 4.2:+14988779 | None:intergenic |
TGAAGAAATGTGAGATCCGT+CGG | 0.576644 | 4.2:+14995845 | None:intergenic |
CTTGTTCGGGAATAATTTCG+GGG | 0.580017 | 4.2:+14995703 | None:intergenic |
GATTTGGAGAAGAATCCGGC+AGG | 0.580592 | 4.2:+14995579 | None:intergenic |
CATAATGGCATCTAAAGTCA+TGG | 0.585243 | 4.2:+14994139 | None:intergenic |
GGAGATAGGACGTGCCGGAA+GGG | 0.586499 | 4.2:-14992643 | MS.gene09189:CDS |
TGTGGTAACGCCGATAGTCA+AGG | 0.586656 | 4.2:-14995430 | MS.gene09189:CDS |
AAGCTGGTTGAGTGTTTCAG+AGG | 0.587339 | 4.2:+14994720 | None:intergenic |
AAGTCTGGAAGAGTATGTAC+AGG | 0.589387 | 4.2:-14992750 | MS.gene09189:intron |
CCAACTGTGGCAAATGACAT+GGG | 0.590683 | 4.2:-14991039 | MS.gene09189:CDS |
GATGATGATGAGGAGGAGGA+TGG | 0.591373 | 4.2:-14995213 | MS.gene09189:CDS |
GAAGTTTCTAGATTGAGTAA+GGG | 0.593349 | 4.2:+14995531 | None:intergenic |
CTGCTGACAAAAGCTCCTGT+GGG | 0.597436 | 4.2:-14992410 | MS.gene09189:CDS |
TCAGATCTGAAAATAAGCAC+GGG | 0.598799 | 4.2:-14991080 | MS.gene09189:intron |
ATCACACTTCATGCTTGCAA+AGG | 0.600346 | 4.2:-14989322 | MS.gene09189:CDS |
AAGCACATTGTATATCTGAA+TGG | 0.600670 | 4.2:-14994379 | MS.gene09189:intron |
TGATAACAACATCAAGGCAA+AGG | 0.601528 | 4.2:-14993557 | MS.gene09189:intron |
TTGTAGGAGATAGGACGTGC+CGG | 0.602571 | 4.2:-14992648 | MS.gene09189:intron |
AGGAGATAGGACGTGCCGGA+AGG | 0.602725 | 4.2:-14992644 | MS.gene09189:CDS |
GACGTGCCGGAAGGGATGGG+AGG | 0.603769 | 4.2:-14992635 | MS.gene09189:CDS |
TAATTTGATAGGTGCTAGTG+TGG | 0.604367 | 4.2:-14995448 | MS.gene09189:CDS |
TTACACCAAGAGCTGTTGCG+AGG | 0.607759 | 4.2:-14988827 | MS.gene09189:CDS |
AGGAGAGCGCCCGAAATGAG+CGG | 0.608876 | 4.2:+14994856 | None:intergenic |
TTTAGAATAAGATTTGTGCA+AGG | 0.610553 | 4.2:+14994101 | None:intergenic |
TATGAAGGTTGTTGCAACTG+TGG | 0.610759 | 4.2:-14993248 | MS.gene09189:intron |
TACACCAAGAGCTGTTGCGA+GGG | 0.610987 | 4.2:-14988826 | MS.gene09189:CDS |
AATCTATGTGATAAGATGAA+CGG | 0.611074 | 4.2:-14989359 | MS.gene09189:CDS |
GCCTACCCTTATACAATATG+GGG | 0.613022 | 4.2:-14988780 | MS.gene09189:CDS |
TGAGTCTCATGAATGAAGGT+CGG | 0.613163 | 4.2:+14994228 | None:intergenic |
TCAAAGAACCTGCTTCACGC+AGG | 0.615491 | 4.2:-14992371 | MS.gene09189:CDS |
AGAAGGCGATGATGATGATG+AGG | 0.617816 | 4.2:-14995223 | MS.gene09189:CDS |
CAGGTTTGATATGAAAGAAG+AGG | 0.626887 | 4.2:-14992352 | MS.gene09189:intron |
ACATATGCAGTCGTTTCCTG+CGG | 0.627745 | 4.2:-14988997 | MS.gene09189:intron |
CAACTGTGGCAAATGACATG+GGG | 0.630786 | 4.2:-14991038 | MS.gene09189:CDS |
TCACCTTTATATCTGCCCGC+AGG | 0.632718 | 4.2:+14988981 | None:intergenic |
ACACTCAACCAGCTTCGTCA+AGG | 0.636248 | 4.2:-14994712 | MS.gene09189:CDS |
TCAATCATCAAAGCCACCAA+AGG | 0.638228 | 4.2:+14994898 | None:intergenic |
TTGTTCGGGAATAATTTCGG+GGG | 0.640718 | 4.2:+14995704 | None:intergenic |
GGTATTTCTGCAAAGGAACG+TGG | 0.641724 | 4.2:-14993427 | MS.gene09189:CDS |
AACTTATGAAATGAAGGACA+TGG | 0.644073 | 4.2:-14989932 | MS.gene09189:CDS |
ACACACGTTGCATTTGTCTG+TGG | 0.649253 | 4.2:+14991683 | None:intergenic |
TTCCAGAATCCTATAACAGT+AGG | 0.656135 | 4.2:+14989909 | None:intergenic |
AAGACTTCATAAGCACCAGT+AGG | 0.660081 | 4.2:+14993928 | None:intergenic |
AGAGCGCCCGAAATGAGCGG+AGG | 0.660880 | 4.2:+14994859 | None:intergenic |
AGCGACTTCCCAGCACCCGT+CGG | 0.662358 | 4.2:+14994973 | None:intergenic |
CTAACAACAAGCGTAATCCC+AGG | 0.664152 | 4.2:+14994922 | None:intergenic |
ATTTGGAGAAGAATCCGGCA+GGG | 0.667823 | 4.2:+14995580 | None:intergenic |
ATTTGTGCAAGGAATATCCA+GGG | 0.675764 | 4.2:+14994112 | None:intergenic |
TGGAGAAGAATCCGGCAGGG+AGG | 0.677448 | 4.2:+14995583 | None:intergenic |
TGTTCGGGAATAATTTCGGG+GGG | 0.690236 | 4.2:+14995705 | None:intergenic |
GCTGTTGCGAGGGTAATGCA+CGG | 0.692274 | 4.2:-14988816 | MS.gene09189:CDS |
AACTGTGGCAAATGACATGG+GGG | 0.692492 | 4.2:-14991037 | MS.gene09189:CDS |
GATTCCGATTCAGACTCCGA+CGG | 0.702398 | 4.2:-14995861 | MS.gene09189:CDS |
TGAATGCAAAGTGTTGGAGG+AGG | 0.703820 | 4.2:-14995139 | MS.gene09189:CDS |
TACCAAGATAGACTTTAAGG+TGG | 0.711526 | 4.2:-14988410 | MS.gene09189:CDS |
GGATGTTGAAAGGAAGTGAG+GGG | 0.717854 | 4.2:+14995658 | None:intergenic |
TGGTTCAAACAAGATCAGAG+TGG | 0.733769 | 4.2:-14993386 | MS.gene09189:intron |
TATCAGCAGATATTACACGA+TGG | 0.752851 | 4.2:-14989864 | MS.gene09189:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 14988354 | 14995892 | 14988354 | ID=MS.gene09189 |
chr4.2 | mRNA | 14988354 | 14995892 | 14988354 | ID=MS.gene09189.t1;Parent=MS.gene09189 |
chr4.2 | exon | 14994843 | 14995892 | 14994843 | ID=MS.gene09189.t1.exon1;Parent=MS.gene09189.t1 |
chr4.2 | CDS | 14994843 | 14995892 | 14994843 | ID=cds.MS.gene09189.t1;Parent=MS.gene09189.t1 |
chr4.2 | exon | 14994702 | 14994755 | 14994702 | ID=MS.gene09189.t1.exon2;Parent=MS.gene09189.t1 |
chr4.2 | CDS | 14994702 | 14994755 | 14994702 | ID=cds.MS.gene09189.t1;Parent=MS.gene09189.t1 |
chr4.2 | exon | 14994380 | 14994492 | 14994380 | ID=MS.gene09189.t1.exon3;Parent=MS.gene09189.t1 |
chr4.2 | CDS | 14994380 | 14994492 | 14994380 | ID=cds.MS.gene09189.t1;Parent=MS.gene09189.t1 |
chr4.2 | exon | 14994050 | 14994262 | 14994050 | ID=MS.gene09189.t1.exon4;Parent=MS.gene09189.t1 |
chr4.2 | CDS | 14994050 | 14994262 | 14994050 | ID=cds.MS.gene09189.t1;Parent=MS.gene09189.t1 |
chr4.2 | exon | 14993881 | 14993959 | 14993881 | ID=MS.gene09189.t1.exon5;Parent=MS.gene09189.t1 |
chr4.2 | CDS | 14993881 | 14993959 | 14993881 | ID=cds.MS.gene09189.t1;Parent=MS.gene09189.t1 |
chr4.2 | exon | 14993558 | 14993611 | 14993558 | ID=MS.gene09189.t1.exon6;Parent=MS.gene09189.t1 |
chr4.2 | CDS | 14993558 | 14993611 | 14993558 | ID=cds.MS.gene09189.t1;Parent=MS.gene09189.t1 |
chr4.2 | exon | 14993387 | 14993461 | 14993387 | ID=MS.gene09189.t1.exon7;Parent=MS.gene09189.t1 |
chr4.2 | CDS | 14993387 | 14993461 | 14993387 | ID=cds.MS.gene09189.t1;Parent=MS.gene09189.t1 |
chr4.2 | exon | 14993210 | 14993263 | 14993210 | ID=MS.gene09189.t1.exon8;Parent=MS.gene09189.t1 |
chr4.2 | CDS | 14993210 | 14993263 | 14993210 | ID=cds.MS.gene09189.t1;Parent=MS.gene09189.t1 |
chr4.2 | exon | 14992751 | 14992795 | 14992751 | ID=MS.gene09189.t1.exon9;Parent=MS.gene09189.t1 |
chr4.2 | CDS | 14992751 | 14992795 | 14992751 | ID=cds.MS.gene09189.t1;Parent=MS.gene09189.t1 |
chr4.2 | exon | 14992570 | 14992664 | 14992570 | ID=MS.gene09189.t1.exon10;Parent=MS.gene09189.t1 |
chr4.2 | CDS | 14992570 | 14992664 | 14992570 | ID=cds.MS.gene09189.t1;Parent=MS.gene09189.t1 |
chr4.2 | exon | 14992353 | 14992482 | 14992353 | ID=MS.gene09189.t1.exon11;Parent=MS.gene09189.t1 |
chr4.2 | CDS | 14992353 | 14992482 | 14992353 | ID=cds.MS.gene09189.t1;Parent=MS.gene09189.t1 |
chr4.2 | exon | 14991667 | 14991765 | 14991667 | ID=MS.gene09189.t1.exon12;Parent=MS.gene09189.t1 |
chr4.2 | CDS | 14991667 | 14991765 | 14991667 | ID=cds.MS.gene09189.t1;Parent=MS.gene09189.t1 |
chr4.2 | exon | 14991381 | 14991436 | 14991381 | ID=MS.gene09189.t1.exon13;Parent=MS.gene09189.t1 |
chr4.2 | CDS | 14991381 | 14991436 | 14991381 | ID=cds.MS.gene09189.t1;Parent=MS.gene09189.t1 |
chr4.2 | exon | 14990996 | 14991098 | 14990996 | ID=MS.gene09189.t1.exon14;Parent=MS.gene09189.t1 |
chr4.2 | CDS | 14990996 | 14991098 | 14990996 | ID=cds.MS.gene09189.t1;Parent=MS.gene09189.t1 |
chr4.2 | exon | 14989840 | 14989968 | 14989840 | ID=MS.gene09189.t1.exon15;Parent=MS.gene09189.t1 |
chr4.2 | CDS | 14989840 | 14989968 | 14989840 | ID=cds.MS.gene09189.t1;Parent=MS.gene09189.t1 |
chr4.2 | exon | 14989257 | 14989426 | 14989257 | ID=MS.gene09189.t1.exon16;Parent=MS.gene09189.t1 |
chr4.2 | CDS | 14989257 | 14989426 | 14989257 | ID=cds.MS.gene09189.t1;Parent=MS.gene09189.t1 |
chr4.2 | exon | 14988985 | 14989009 | 14988985 | ID=MS.gene09189.t1.exon17;Parent=MS.gene09189.t1 |
chr4.2 | CDS | 14988985 | 14989009 | 14988985 | ID=cds.MS.gene09189.t1;Parent=MS.gene09189.t1 |
chr4.2 | exon | 14988765 | 14988880 | 14988765 | ID=MS.gene09189.t1.exon18;Parent=MS.gene09189.t1 |
chr4.2 | CDS | 14988765 | 14988880 | 14988765 | ID=cds.MS.gene09189.t1;Parent=MS.gene09189.t1 |
chr4.2 | exon | 14988354 | 14988441 | 14988354 | ID=MS.gene09189.t1.exon19;Parent=MS.gene09189.t1 |
chr4.2 | CDS | 14988354 | 14988441 | 14988354 | ID=cds.MS.gene09189.t1;Parent=MS.gene09189.t1 |
Gene Sequence |
Protein sequence |