AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09908

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09908.t1 MTR_7g098930 95.714 490 20 1 1 489 1 490 0.0 932
MS.gene09908.t1 MTR_7g113340 90.184 489 48 0 1 489 1 489 0.0 887
MS.gene09908.t1 MTR_1g045550 73.878 490 126 2 1 489 1 489 0.0 748
MS.gene09908.t1 MTR_1g079760 74.233 489 120 3 1 485 1 487 0.0 716
MS.gene09908.t1 MTR_3g463730 67.117 444 141 4 41 482 8 448 0.0 588
MS.gene09908.t1 MTR_7g115050 28.101 395 231 14 103 477 86 447 9.69e-22 98.2
MS.gene09908.t1 MTR_8g074750 26.281 449 273 14 47 472 30 443 3.83e-19 90.5
MS.gene09908.t1 MTR_1g036410 25.277 451 278 12 47 472 24 440 4.47e-18 87.0
MS.gene09908.t1 MTR_7g069640 26.415 371 228 11 123 485 129 462 2.74e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09908.t1 AT4G28700 79.002 481 96 2 2 477 3 483 0.0 746
MS.gene09908.t1 AT4G13510 72.840 486 128 3 5 489 2 484 0.0 742
MS.gene09908.t1 AT3G24290 75.052 477 116 2 3 479 4 477 0.0 735
MS.gene09908.t1 AT3G24300 73.849 478 121 3 3 479 4 478 0.0 726
MS.gene09908.t1 AT1G64780 74.892 462 110 4 27 484 32 491 0.0 714
MS.gene09908.t1 AT2G38290 25.918 463 291 12 47 488 20 451 9.10e-16 80.1
MS.gene09908.t1 AT2G38290 27.869 366 215 12 135 488 7 335 2.51e-13 71.6

Find 110 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCACATTTGGTTCAAATTT+TGG 0.087819 7.1:+9886737 MS.gene09908:CDS
TATTTCAGTTGCACGTTTCT+TGG 0.217407 7.1:-9886919 None:intergenic
CAATATGTTAAAGAAGTTTA+TGG 0.222489 7.1:+9886657 MS.gene09908:CDS
CAATAGTTGCGCATTGGTTT+TGG 0.263486 7.1:+9885992 MS.gene09908:CDS
GCAGCTCTCACTACTTTGTT+TGG 0.267595 7.1:+9886375 MS.gene09908:CDS
TTCGGGTTTGCCTTTGCTTT+CGG 0.288803 7.1:+9885769 MS.gene09908:CDS
TAGTGGTACTTTAGTTGTTA+TGG 0.289328 7.1:+9886203 MS.gene09908:CDS
TGATCAAATCTACCAATTCT+TGG 0.296521 7.1:-9886150 None:intergenic
GGGAGGTGGTGGAAGATTAT+TGG 0.298602 7.1:+9886713 MS.gene09908:CDS
CGTTTCTTGGAACGTCCTTC+AGG 0.301303 7.1:-9886906 None:intergenic
TGTTTGGGTGAGTGTTACTA+TGG 0.317455 7.1:+9886767 MS.gene09908:CDS
GATGTTTGTAATGGTTTGTT+AGG 0.319352 7.1:+9886432 MS.gene09908:CDS
CATTTAGTTGGTGCAGTTGC+TGG 0.322498 7.1:+9886102 MS.gene09908:CDS
CTTGAAGCTGCTCAACTTCA+TGG 0.324413 7.1:+9886585 MS.gene09908:CDS
AAGATTATTGGCTGCACATT+TGG 0.325570 7.1:+9886725 MS.gene09908:CDS
TATGGTCAATGGAGTGCTAT+TGG 0.327941 7.1:+9886315 MS.gene09908:CDS
CAAAACCAATGCGCAACTAT+TGG 0.341333 7.1:-9885991 None:intergenic
AGGCCTTATGGTTTGTTGTT+GGG 0.343846 7.1:+9886693 MS.gene09908:CDS
GGTTCACCAGATAGGCCTTA+TGG 0.344593 7.1:+9886681 MS.gene09908:CDS
GCTTTCGGCACACCTTCTAA+TGG 0.348115 7.1:+9885784 MS.gene09908:CDS
TGTGGTGTTGTTCATTTAGT+TGG 0.354549 7.1:+9886090 MS.gene09908:CDS
AACAAACCATAAGGCCTATC+TGG 0.363039 7.1:-9886687 None:intergenic
AGTGGTACTTTAGTTGTTAT+GGG 0.366370 7.1:+9886204 MS.gene09908:CDS
CAGCTCTCACTACTTTGTTT+GGG 0.373878 7.1:+9886376 MS.gene09908:CDS
AACGTTTGCAAACAGGTCAT+TGG 0.375052 7.1:+9886400 MS.gene09908:CDS
TTGCGGATTTGTTGCCGCTT+GGG 0.381161 7.1:+9886512 MS.gene09908:CDS
GAAGCCGTTGCAGATGTATT+CGG 0.389455 7.1:-9885548 None:intergenic
AACGTCCTTCAGGCTCTTCA+TGG 0.389542 7.1:-9886896 None:intergenic
TTACTTTGGTTTGGTTGGTA+TGG 0.390915 7.1:+9886234 MS.gene09908:CDS
ATTGGTTAACATAATATTCA+TGG 0.394480 7.1:-9885707 None:intergenic
TGAAGAAGAGATGGCTGGAT+TGG 0.397610 7.1:+9886839 MS.gene09908:CDS
TAGGCCTTATGGTTTGTTGT+TGG 0.399686 7.1:+9886692 MS.gene09908:CDS
GTTGTTCTGTTGTTGATCCA+TGG 0.400973 7.1:+9886478 MS.gene09908:CDS
TTCATGGTGGTTGTGGCACA+TGG 0.403730 7.1:+9886601 MS.gene09908:CDS
ATCATCATATTGAAATTTCT+CGG 0.404442 7.1:-9886559 None:intergenic
TTTGGGAAACGTTTGCAAAC+AGG 0.404967 7.1:+9886393 MS.gene09908:CDS
ACACCTTCTAATGGTTTCAT+TGG 0.405120 7.1:+9885793 MS.gene09908:CDS
GGTTTGTTGTTGGGAGGTGG+TGG 0.412513 7.1:+9886702 MS.gene09908:CDS
TTTGCGGATTTGTTGCCGCT+TGG 0.413929 7.1:+9886511 MS.gene09908:CDS
TTTCCAATGAAACCATTAGA+AGG 0.426927 7.1:-9885796 None:intergenic
GATGTATTCGGCAGCGGCTG+TGG 0.428663 7.1:-9885536 None:intergenic
TATGGTTTGTTGTTGGGAGG+TGG 0.435507 7.1:+9886699 MS.gene09908:CDS
TTTATGGTGGTTCACCAGAT+AGG 0.437334 7.1:+9886673 MS.gene09908:CDS
TTGATTGAAGGACCAAGAAT+TGG 0.443702 7.1:+9886138 MS.gene09908:CDS
GCTCAACTTCATGGTGGTTG+TGG 0.443914 7.1:+9886594 MS.gene09908:CDS
GGTGATAGTGGTAATTACTA+TGG 0.445774 7.1:+9886297 MS.gene09908:CDS
ATGGTCAATGGAGTGCTATT+GGG 0.445910 7.1:+9886316 MS.gene09908:CDS
AACTATTGGATAAACTAAAC+CGG 0.447985 7.1:-9885977 None:intergenic
TAGATTTGATCATGAAGGTA+AGG 0.457000 7.1:+9886161 MS.gene09908:CDS
TGCTGATGGTTGGGGTAGTC+CGG 0.458442 7.1:+9886017 MS.gene09908:CDS
TTCATAAATTGAATTTGCTT+AGG 0.462409 7.1:+9886808 MS.gene09908:CDS
TTGTTCTGTTGTTGATCCAT+GGG 0.462585 7.1:+9886479 MS.gene09908:CDS
CATGGTGGTTGTGGCACATG+GGG 0.465415 7.1:+9886603 MS.gene09908:CDS
GTGGAGGTCGGAGGCGGAGC+AGG 0.470016 7.1:-9885488 None:intergenic
TTTAACTAGCCATGGTGGAT+TGG 0.471431 7.1:+9886863 MS.gene09908:CDS
CCATGGGCTGCAATAGTTTG+CGG 0.479193 7.1:+9886495 MS.gene09908:CDS
GCTGTGACAACTACATTGGC+TGG 0.480039 7.1:+9886345 MS.gene09908:CDS
AATGTTACTGATGTTTGTAA+TGG 0.492106 7.1:+9886423 MS.gene09908:CDS
GAGAGCGTGGAGGTCGGAGG+CGG 0.493293 7.1:-9885494 None:intergenic
GTGGTAATTACTATGGTCAA+TGG 0.496312 7.1:+9886304 MS.gene09908:CDS
GTCAATGAATTTGTTTGCAA+TGG 0.501078 7.1:-9885575 None:intergenic
AATGTTCTTGATGCCGCCAC+TGG 0.502684 7.1:+9885727 MS.gene09908:CDS
GTTTGTAATGGTTTGTTAGG+TGG 0.503528 7.1:+9886435 MS.gene09908:CDS
ATGGTTGGGGTAGTCCGGCT+CGG 0.503769 7.1:+9886022 MS.gene09908:CDS
ATTGGTAGATTTGATCATGA+AGG 0.517699 7.1:+9886156 MS.gene09908:CDS
TGGAGTTTGCACCGCTGCCG+AGG 0.519424 7.1:-9885516 None:intergenic
CCTCCCAACAACAAACCATA+AGG 0.520192 7.1:-9886696 None:intergenic
TCCGACCTCCACGCTCTCCT+CGG 0.524571 7.1:+9885499 MS.gene09908:CDS
TCATGGTGGTTGTGGCACAT+GGG 0.525963 7.1:+9886602 MS.gene09908:CDS
CCTTATGGTTTGTTGTTGGG+AGG 0.526212 7.1:+9886696 MS.gene09908:CDS
GTTCTTGATGCCGCCACTGG+CGG 0.529079 7.1:+9885730 MS.gene09908:CDS
CTCCACGCTCTCCTCGGCAG+CGG 0.535645 7.1:+9885505 MS.gene09908:CDS
AACGTGCAACTGAAATATGA+AGG 0.545110 7.1:+9886925 MS.gene09908:CDS
CACCGCTGCCGAGGAGAGCG+TGG 0.546466 7.1:-9885507 None:intergenic
TTTATCCAATAGTTGCGCAT+TGG 0.550357 7.1:+9885986 MS.gene09908:CDS
CCGCAAACTATTGCAGCCCA+TGG 0.552340 7.1:-9886495 None:intergenic
CAAGGTAAGCGGAAAAGAGA+AGG 0.554067 7.1:-9885624 None:intergenic
TCACATGAAGAAGAGATGGC+TGG 0.556577 7.1:+9886834 MS.gene09908:CDS
AACGGAACCAGCGCAAAGCA+TGG 0.565138 7.1:-9885671 None:intergenic
CATGGCAAAACCGAGTTGCA+TGG 0.567366 7.1:-9885653 None:intergenic
GGATTGGATTTAACTAGCCA+TGG 0.567834 7.1:+9886855 MS.gene09908:CDS
GAGTTCACATGAAGAAGAGA+TGG 0.574355 7.1:+9886830 MS.gene09908:CDS
GTTGCAGATGTATTCGGCAG+CGG 0.576245 7.1:-9885542 None:intergenic
GTTTGGGTGAGTGTTACTAT+GGG 0.584751 7.1:+9886768 MS.gene09908:CDS
GCCGAGGAGAGCGTGGAGGT+CGG 0.587689 7.1:-9885500 None:intergenic
GAGGAGAGCGTGGAGGTCGG+AGG 0.594655 7.1:-9885497 None:intergenic
AGATTTGATCATGAAGGTAA+GGG 0.600041 7.1:+9886162 MS.gene09908:CDS
TATGTTAAAGAAGTTTATGG+TGG 0.601613 7.1:+9886660 MS.gene09908:CDS
AAGATGTTAAGAAAAGAACC+AGG 0.604124 7.1:-9886264 None:intergenic
GTAGGTGTTGTCAACAGCGT+AGG 0.604804 7.1:-9885602 None:intergenic
GACAGCTGTGACAACTACAT+TGG 0.614425 7.1:+9886341 MS.gene09908:CDS
TGAAGTTGAGCAGCTTCAAG+AGG 0.615625 7.1:-9886582 None:intergenic
AGAAGGTGTGCCGAAAGCAA+AGG 0.615821 7.1:-9885779 None:intergenic
GGTAAGGGTGTTTCAATGAG+AGG 0.619487 7.1:+9886177 MS.gene09908:CDS
GCTGCAGCAGGAATCACTAG+TGG 0.625263 7.1:+9885898 MS.gene09908:CDS
CCATAATCAAAAGACTGAGA+AGG 0.626299 7.1:-9885844 None:intergenic
TTGGATTTAACTAGCCATGG+TGG 0.626409 7.1:+9886858 MS.gene09908:CDS
GTTTCAATGAGAGGACATAG+TGG 0.631638 7.1:+9886186 MS.gene09908:CDS
GTAAGCGGAAAAGAGAAGGT+AGG 0.633933 7.1:-9885620 None:intergenic
AACACTCACCCAAACAACAA+TGG 0.638562 7.1:-9886760 None:intergenic
GTCAATGGAGTGCTATTGGG+AGG 0.640296 7.1:+9886319 MS.gene09908:CDS
AGTGGCGGCATCAAGAACAT+TGG 0.640439 7.1:-9885725 None:intergenic
ATGGTGGTTGTGGCACATGG+GGG 0.642261 7.1:+9886604 MS.gene09908:CDS
AGATGTTAAGAAAAGAACCA+GGG 0.643491 7.1:-9886263 None:intergenic
CAGTACCATGAAGAGCCTGA+AGG 0.656635 7.1:+9886891 MS.gene09908:CDS
GAAGCTGCTCAACTTCATGG+TGG 0.677955 7.1:+9886588 MS.gene09908:CDS
GCATCCAATCAAAACCCAAG+CGG 0.689101 7.1:-9886526 None:intergenic
CGCTGCCGAGGAGAGCGTGG+AGG 0.689136 7.1:-9885504 None:intergenic
ACTGATAAGCCAATCCACCA+TGG 0.694933 7.1:-9886872 None:intergenic
GCTGCCGAATACATCTGCAA+CGG 0.700251 7.1:+9885544 MS.gene09908:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATGAAGAATAAAAAACA+AGG - chr7.1:9886796-9886815 None:intergenic 15.0%
!!! ATTTATTCATCTTTTTTAAC+CGG + chr7.1:9885958-9885977 MS.gene09908:CDS 15.0%
!! ATCATCATATTGAAATTTCT+CGG - chr7.1:9886562-9886581 None:intergenic 20.0%
!! ATTGGTTAACATAATATTCA+TGG - chr7.1:9885710-9885729 None:intergenic 20.0%
!! CAATATGTTAAAGAAGTTTA+TGG + chr7.1:9886657-9886676 MS.gene09908:CDS 20.0%
!! CTTAACATCTTAAAAACTTA+TGG + chr7.1:9886276-9886295 MS.gene09908:CDS 20.0%
!!! GCATTTTTTTCTATATTTTC+GGG + chr7.1:9885752-9885771 MS.gene09908:CDS 20.0%
!!! GGCATTTTTTTCTATATTTT+CGG + chr7.1:9885751-9885770 MS.gene09908:CDS 20.0%
!!! TTCATAAATTGAATTTGCTT+AGG + chr7.1:9886808-9886827 MS.gene09908:CDS 20.0%
! AACTATTGGATAAACTAAAC+CGG - chr7.1:9885980-9885999 None:intergenic 25.0%
! AATGTTACTGATGTTTGTAA+TGG + chr7.1:9886423-9886442 MS.gene09908:CDS 25.0%
! TATGTTAAAGAAGTTTATGG+TGG + chr7.1:9886660-9886679 MS.gene09908:CDS 25.0%
! TTAAAAACTTATGGTGATAG+TGG + chr7.1:9886285-9886304 MS.gene09908:CDS 25.0%
!! ATGGATATTTTCTGTATCAA+TGG + chr7.1:9885863-9885882 MS.gene09908:CDS 25.0%
!! CATAATATTCATGGTGTTTT+TGG - chr7.1:9885701-9885720 None:intergenic 25.0%
!! TGGATATTTTCTGTATCAAT+GGG + chr7.1:9885864-9885883 MS.gene09908:CDS 25.0%
!! TTATGGGAACATTTTTACTT+TGG + chr7.1:9886220-9886239 MS.gene09908:CDS 25.0%
!!! TTCATTGGAAAACACTTTTT+CGG + chr7.1:9885808-9885827 MS.gene09908:CDS 25.0%
AAGATGTTAAGAAAAGAACC+AGG - chr7.1:9886267-9886286 None:intergenic 30.0%
AGATGTTAAGAAAAGAACCA+GGG - chr7.1:9886266-9886285 None:intergenic 30.0%
AGATTTGATCATGAAGGTAA+GGG + chr7.1:9886162-9886181 MS.gene09908:CDS 30.0%
AGTGGTACTTTAGTTGTTAT+GGG + chr7.1:9886204-9886223 MS.gene09908:CDS 30.0%
ATTGGTAGATTTGATCATGA+AGG + chr7.1:9886156-9886175 MS.gene09908:CDS 30.0%
TAGATTTGATCATGAAGGTA+AGG + chr7.1:9886161-9886180 MS.gene09908:CDS 30.0%
TAGTGGTACTTTAGTTGTTA+TGG + chr7.1:9886203-9886222 MS.gene09908:CDS 30.0%
TGATCAAATCTACCAATTCT+TGG - chr7.1:9886153-9886172 None:intergenic 30.0%
TTTCCAATGAAACCATTAGA+AGG - chr7.1:9885799-9885818 None:intergenic 30.0%
! GGAACATTTTTACTTTGGTT+TGG + chr7.1:9886225-9886244 MS.gene09908:CDS 30.0%
! GTCAATGAATTTGTTTGCAA+TGG - chr7.1:9885578-9885597 None:intergenic 30.0%
!! AAATTTTGGCCATTGTTGTT+TGG + chr7.1:9886751-9886770 MS.gene09908:CDS 30.0%
!! GAAAATCTTTTGTTTGGTTC+TGG + chr7.1:9886048-9886067 MS.gene09908:CDS 30.0%
!! GATGTTTGTAATGGTTTGTT+AGG + chr7.1:9886432-9886451 MS.gene09908:CDS 30.0%
!! TGCACATTTGGTTCAAATTT+TGG + chr7.1:9886737-9886756 MS.gene09908:CDS 30.0%
!!! AATTTTGGCCATTGTTGTTT+GGG + chr7.1:9886752-9886771 MS.gene09908:CDS 30.0%
!!! CATTTTTACTTTGGTTTGGT+TGG + chr7.1:9886229-9886248 MS.gene09908:CDS 30.0%
ACACCTTCTAATGGTTTCAT+TGG + chr7.1:9885793-9885812 MS.gene09908:CDS 35.0%
CCATAATCAAAAGACTGAGA+AGG - chr7.1:9885847-9885866 None:intergenic 35.0%
GTGGTAATTACTATGGTCAA+TGG + chr7.1:9886304-9886323 MS.gene09908:CDS 35.0%
TATTTCAGTTGCACGTTTCT+TGG - chr7.1:9886922-9886941 None:intergenic 35.0%
TTGATTGAAGGACCAAGAAT+TGG + chr7.1:9886138-9886157 MS.gene09908:CDS 35.0%
TTGTTCTGTTGTTGATCCAT+GGG + chr7.1:9886479-9886498 MS.gene09908:CDS 35.0%
TTTATCCAATAGTTGCGCAT+TGG + chr7.1:9885986-9886005 MS.gene09908:CDS 35.0%
! AAGATTATTGGCTGCACATT+TGG + chr7.1:9886725-9886744 MS.gene09908:CDS 35.0%
! CGGTCTGAAAATCTTTTGTT+TGG + chr7.1:9886042-9886061 MS.gene09908:CDS 35.0%
!! CCTTCTCAGTCTTTTGATTA+TGG + chr7.1:9885844-9885863 MS.gene09908:CDS 35.0%
!! GGTGATAGTGGTAATTACTA+TGG + chr7.1:9886297-9886316 MS.gene09908:CDS 35.0%
!! GTTTGTAATGGTTTGTTAGG+TGG + chr7.1:9886435-9886454 MS.gene09908:CDS 35.0%
!! TGTGGTGTTGTTCATTTAGT+TGG + chr7.1:9886090-9886109 MS.gene09908:CDS 35.0%
!! TTACTTTGGTTTGGTTGGTA+TGG + chr7.1:9886234-9886253 MS.gene09908:CDS 35.0%
!!! TCTGGTGTTATTGATTTTGC+TGG + chr7.1:9886066-9886085 MS.gene09908:CDS 35.0%
AACAAACCATAAGGCCTATC+TGG - chr7.1:9886690-9886709 None:intergenic 40.0%
AACACTCACCCAAACAACAA+TGG - chr7.1:9886763-9886782 None:intergenic 40.0%
AACGTTTGCAAACAGGTCAT+TGG + chr7.1:9886400-9886419 MS.gene09908:CDS 40.0%
ATAGAAAAAAATGCCGCCAG+TGG - chr7.1:9885746-9885765 None:intergenic 40.0%
CAAAACCAATGCGCAACTAT+TGG - chr7.1:9885994-9886013 None:intergenic 40.0%
CATGGCAAAAACAAGGTAAG+CGG - chr7.1:9885638-9885657 None:intergenic 40.0%
GAGTTCACATGAAGAAGAGA+TGG + chr7.1:9886830-9886849 MS.gene09908:CDS 40.0%
GGATTGGATTTAACTAGCCA+TGG + chr7.1:9886855-9886874 MS.gene09908:CDS 40.0%
GTTGTTCTGTTGTTGATCCA+TGG + chr7.1:9886478-9886497 MS.gene09908:CDS 40.0%
GTTTCAATGAGAGGACATAG+TGG + chr7.1:9886186-9886205 MS.gene09908:CDS 40.0%
TTGGATTTAACTAGCCATGG+TGG + chr7.1:9886858-9886877 MS.gene09908:CDS 40.0%
TTTATGGTGGTTCACCAGAT+AGG + chr7.1:9886673-9886692 MS.gene09908:CDS 40.0%
TTTGGGAAACGTTTGCAAAC+AGG + chr7.1:9886393-9886412 MS.gene09908:CDS 40.0%
! AAAAGATTTTCAGACCGAGC+CGG - chr7.1:9886039-9886058 None:intergenic 40.0%
! ATGGTCAATGGAGTGCTATT+GGG + chr7.1:9886316-9886335 MS.gene09908:CDS 40.0%
! CAGCTCTCACTACTTTGTTT+GGG + chr7.1:9886376-9886395 MS.gene09908:CDS 40.0%
! GTTTGGGTGAGTGTTACTAT+GGG + chr7.1:9886768-9886787 MS.gene09908:CDS 40.0%
! TATGGTCAATGGAGTGCTAT+TGG + chr7.1:9886315-9886334 MS.gene09908:CDS 40.0%
! TGTTTGGGTGAGTGTTACTA+TGG + chr7.1:9886767-9886786 MS.gene09908:CDS 40.0%
!! AGGCCTTATGGTTTGTTGTT+GGG + chr7.1:9886693-9886712 MS.gene09908:CDS 40.0%
!! TAGGCCTTATGGTTTGTTGT+TGG + chr7.1:9886692-9886711 MS.gene09908:CDS 40.0%
!! TTTAACTAGCCATGGTGGAT+TGG + chr7.1:9886863-9886882 MS.gene09908:CDS 40.0%
!!! CAATAGTTGCGCATTGGTTT+TGG + chr7.1:9885992-9886011 MS.gene09908:CDS 40.0%
!!! CTTGTTTTTGCCATGCAACT+CGG + chr7.1:9885643-9885662 MS.gene09908:CDS 40.0%
!!! GTTATTGATTTTGCTGGCTG+TGG + chr7.1:9886072-9886091 MS.gene09908:CDS 40.0%
!!! TTTTGGGGTGCTTTGATTGA+AGG + chr7.1:9886126-9886145 MS.gene09908:CDS 40.0%
ACTGATAAGCCAATCCACCA+TGG - chr7.1:9886875-9886894 None:intergenic 45.0%
CAAGGTAAGCGGAAAAGAGA+AGG - chr7.1:9885627-9885646 None:intergenic 45.0%
CCTCCCAACAACAAACCATA+AGG - chr7.1:9886699-9886718 None:intergenic 45.0%
CGAGTTGCATGGCAAAAACA+AGG - chr7.1:9885645-9885664 None:intergenic 45.0%
CTTGAAGCTGCTCAACTTCA+TGG + chr7.1:9886585-9886604 MS.gene09908:CDS 45.0%
GAAGCCGTTGCAGATGTATT+CGG - chr7.1:9885551-9885570 None:intergenic 45.0%
GACAGCTGTGACAACTACAT+TGG + chr7.1:9886341-9886360 MS.gene09908:CDS 45.0%
GCAGCTCTCACTACTTTGTT+TGG + chr7.1:9886375-9886394 MS.gene09908:CDS 45.0%
GCATCCAATCAAAACCCAAG+CGG - chr7.1:9886529-9886548 None:intergenic 45.0%
GTAAGCGGAAAAGAGAAGGT+AGG - chr7.1:9885623-9885642 None:intergenic 45.0%
TCACATGAAGAAGAGATGGC+TGG + chr7.1:9886834-9886853 MS.gene09908:CDS 45.0%
TGAAGAAGAGATGGCTGGAT+TGG + chr7.1:9886839-9886858 MS.gene09908:CDS 45.0%
TGAAGTTGAGCAGCTTCAAG+AGG - chr7.1:9886585-9886604 None:intergenic 45.0%
! CATTTAGTTGGTGCAGTTGC+TGG + chr7.1:9886102-9886121 MS.gene09908:CDS 45.0%
! GGTTTTGCTGCTATAACTGC+AGG + chr7.1:9886456-9886475 MS.gene09908:CDS 45.0%
! TTCGGGTTTGCCTTTGCTTT+CGG + chr7.1:9885769-9885788 MS.gene09908:CDS 45.0%
! TTTTGGTCTGCTGATGGTTG+GGG + chr7.1:9886009-9886028 MS.gene09908:CDS 45.0%
!! CCTTATGGTTTGTTGTTGGG+AGG + chr7.1:9886696-9886715 MS.gene09908:CDS 45.0%
!! GGTAAGGGTGTTTCAATGAG+AGG + chr7.1:9886177-9886196 MS.gene09908:CDS 45.0%
!! GTTTTGGTCTGCTGATGGTT+GGG + chr7.1:9886008-9886027 MS.gene09908:CDS 45.0%
!! TATGGTTTGTTGTTGGGAGG+TGG + chr7.1:9886699-9886718 MS.gene09908:CDS 45.0%
!!! CATGGTGTTTTTGGCACGAA+CGG - chr7.1:9885692-9885711 None:intergenic 45.0%
!!! CATTGGTTTTGGTCTGCTGA+TGG + chr7.1:9886003-9886022 MS.gene09908:CDS 45.0%
!!! GGTTGGTATGGTTTTAACCC+TGG + chr7.1:9886246-9886265 MS.gene09908:CDS 45.0%
!!! TGGTGCAGTTGCTGGTTTTT+GGG + chr7.1:9886110-9886129 MS.gene09908:CDS 45.0%
!!! TTGGTGCAGTTGCTGGTTTT+TGG + chr7.1:9886109-9886128 MS.gene09908:CDS 45.0%
AACGTCCTTCAGGCTCTTCA+TGG - chr7.1:9886899-9886918 None:intergenic 50.0%
AATGTTCTTGATGCCGCCAC+TGG + chr7.1:9885727-9885746 MS.gene09908:CDS 50.0%
AGTGGCGGCATCAAGAACAT+TGG - chr7.1:9885728-9885747 None:intergenic 50.0%
CAGTACCATGAAGAGCCTGA+AGG + chr7.1:9886891-9886910 MS.gene09908:CDS 50.0%
CATGGCAAAACCGAGTTGCA+TGG - chr7.1:9885656-9885675 None:intergenic 50.0%
CGTTTCTTGGAACGTCCTTC+AGG - chr7.1:9886909-9886928 None:intergenic 50.0%
GAAAAAAATGCCGCCAGTGG+CGG - chr7.1:9885743-9885762 None:intergenic 50.0%
GAAGCTGCTCAACTTCATGG+TGG + chr7.1:9886588-9886607 MS.gene09908:CDS 50.0%
GCTCAACTTCATGGTGGTTG+TGG + chr7.1:9886594-9886613 MS.gene09908:CDS 50.0%
GCTGCCGAATACATCTGCAA+CGG + chr7.1:9885544-9885563 MS.gene09908:CDS 50.0%
GCTGTGACAACTACATTGGC+TGG + chr7.1:9886345-9886364 MS.gene09908:CDS 50.0%
GCTTTCGGCACACCTTCTAA+TGG + chr7.1:9885784-9885803 MS.gene09908:CDS 50.0%
GGTTCACCAGATAGGCCTTA+TGG + chr7.1:9886681-9886700 MS.gene09908:CDS 50.0%
GTTGCAGATGTATTCGGCAG+CGG - chr7.1:9885545-9885564 None:intergenic 50.0%
TCATGGTGGTTGTGGCACAT+GGG + chr7.1:9886602-9886621 MS.gene09908:CDS 50.0%
TTCATGGTGGTTGTGGCACA+TGG + chr7.1:9886601-9886620 MS.gene09908:CDS 50.0%
! AGAAGGTGTGCCGAAAGCAA+AGG - chr7.1:9885782-9885801 None:intergenic 50.0%
! CCATGGGCTGCAATAGTTTG+CGG + chr7.1:9886495-9886514 MS.gene09908:CDS 50.0%
! GCTTTTGCAATTGCTGCAGC+AGG + chr7.1:9885886-9885905 MS.gene09908:CDS 50.0%
! GTAGGTGTTGTCAACAGCGT+AGG - chr7.1:9885605-9885624 None:intergenic 50.0%
! GTCAATGGAGTGCTATTGGG+AGG + chr7.1:9886319-9886338 MS.gene09908:CDS 50.0%
!! GGGAGGTGGTGGAAGATTAT+TGG + chr7.1:9886713-9886732 MS.gene09908:CDS 50.0%
!! GGTTTTGGTCTGCTGATGGT+TGG + chr7.1:9886007-9886026 MS.gene09908:CDS 50.0%
!! GTTGCCGCTTGGGTTTTGAT+TGG + chr7.1:9886522-9886541 MS.gene09908:CDS 50.0%
!! TTGCGGATTTGTTGCCGCTT+GGG + chr7.1:9886512-9886531 MS.gene09908:CDS 50.0%
!! TTTGCGGATTTGTTGCCGCT+TGG + chr7.1:9886511-9886530 MS.gene09908:CDS 50.0%
!!! GGTGCAGTTGCTGGTTTTTG+GGG + chr7.1:9886111-9886130 MS.gene09908:CDS 50.0%
AACGGAACCAGCGCAAAGCA+TGG - chr7.1:9885674-9885693 None:intergenic 55.0%
ATGGTGGTTGTGGCACATGG+GGG + chr7.1:9886604-9886623 MS.gene09908:CDS 55.0%
CATGGTGGTTGTGGCACATG+GGG + chr7.1:9886603-9886622 MS.gene09908:CDS 55.0%
CCGCAAACTATTGCAGCCCA+TGG - chr7.1:9886498-9886517 None:intergenic 55.0%
GCTGCAGCAGGAATCACTAG+TGG + chr7.1:9885898-9885917 MS.gene09908:CDS 55.0%
TGCTGATGGTTGGGGTAGTC+CGG + chr7.1:9886017-9886036 MS.gene09908:CDS 55.0%
! GGTTTTGCCATGCTTTGCGC+TGG + chr7.1:9885664-9885683 MS.gene09908:CDS 55.0%
!! GGTTTGTTGTTGGGAGGTGG+TGG + chr7.1:9886702-9886721 MS.gene09908:CDS 55.0%
ATGGTTGGGGTAGTCCGGCT+CGG + chr7.1:9886022-9886041 MS.gene09908:CDS 60.0%
GATGTATTCGGCAGCGGCTG+TGG - chr7.1:9885539-9885558 None:intergenic 60.0%
GTTCTTGATGCCGCCACTGG+CGG + chr7.1:9885730-9885749 MS.gene09908:CDS 60.0%
TCCGACCTCCACGCTCTCCT+CGG + chr7.1:9885499-9885518 MS.gene09908:CDS 65.0%
TGGAGTTTGCACCGCTGCCG+AGG - chr7.1:9885519-9885538 None:intergenic 65.0%
CTCCACGCTCTCCTCGGCAG+CGG + chr7.1:9885505-9885524 MS.gene09908:CDS 70.0%
! GAGAGCGTGGAGGTCGGAGG+CGG - chr7.1:9885497-9885516 None:intergenic 70.0%
! GAGGAGAGCGTGGAGGTCGG+AGG - chr7.1:9885500-9885519 None:intergenic 70.0%
! GCCGAGGAGAGCGTGGAGGT+CGG - chr7.1:9885503-9885522 None:intergenic 70.0%
CACCGCTGCCGAGGAGAGCG+TGG - chr7.1:9885510-9885529 None:intergenic 75.0%
GTGGAGGTCGGAGGCGGAGC+AGG - chr7.1:9885491-9885510 None:intergenic 75.0%
! CGCTGCCGAGGAGAGCGTGG+AGG - chr7.1:9885507-9885526 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 9885475 9886944 9885475 ID=MS.gene09908
chr7.1 mRNA 9885475 9886944 9885475 ID=MS.gene09908.t1;Parent=MS.gene09908
chr7.1 exon 9885475 9886944 9885475 ID=MS.gene09908.t1.exon1;Parent=MS.gene09908.t1
chr7.1 CDS 9885475 9886944 9885475 ID=cds.MS.gene09908.t1;Parent=MS.gene09908.t1
Gene Sequence

>MS.gene09908

ATGACTTCTTTTACCTGCTCCGCCTCCGACCTCCACGCTCTCCTCGGCAGCGGTGCAAACTCCACAGCCGCTGCCGAATACATCTGCAACGGCTTCAACACCATTGCAAACAAATTCATTGACACAACCTACGCTGTTGACAACACCTACCTTCTCTTTTCCGCTTACCTTGTTTTTGCCATGCAACTCGGTTTTGCCATGCTTTGCGCTGGTTCCGTTCGTGCCAAAAACACCATGAATATTATGTTAACCAATGTTCTTGATGCCGCCACTGGCGGCATTTTTTTCTATATTTTCGGGTTTGCCTTTGCTTTCGGCACACCTTCTAATGGTTTCATTGGAAAACACTTTTTCGGTCTTAGTGATTTTCCTTCTCAGTCTTTTGATTATGGATATTTTCTGTATCAATGGGCTTTTGCAATTGCTGCAGCAGGAATCACTAGTGGATCAATTGCTGAGAGAACACAATTTGTTTCTTATTTGATTTATTCATCTTTTTTAACCGGTTTAGTTTATCCAATAGTTGCGCATTGGTTTTGGTCTGCTGATGGTTGGGGTAGTCCGGCTCGGTCTGAAAATCTTTTGTTTGGTTCTGGTGTTATTGATTTTGCTGGCTGTGGTGTTGTTCATTTAGTTGGTGCAGTTGCTGGTTTTTGGGGTGCTTTGATTGAAGGACCAAGAATTGGTAGATTTGATCATGAAGGTAAGGGTGTTTCAATGAGAGGACATAGTGGTACTTTAGTTGTTATGGGAACATTTTTACTTTGGTTTGGTTGGTATGGTTTTAACCCTGGTTCTTTTCTTAACATCTTAAAAACTTATGGTGATAGTGGTAATTACTATGGTCAATGGAGTGCTATTGGGAGGACAGCTGTGACAACTACATTGGCTGGATGCACTGCAGCTCTCACTACTTTGTTTGGGAAACGTTTGCAAACAGGTCATTGGAATGTTACTGATGTTTGTAATGGTTTGTTAGGTGGTTTTGCTGCTATAACTGCAGGTTGTTCTGTTGTTGATCCATGGGCTGCAATAGTTTGCGGATTTGTTGCCGCTTGGGTTTTGATTGGATGCAATTTGTTAGCCGAGAAATTTCAATATGATGATCCTCTTGAAGCTGCTCAACTTCATGGTGGTTGTGGCACATGGGGGATTATTTTCACTGCTTTGTTTGCTAAGAAACAATATGTTAAAGAAGTTTATGGTGGTTCACCAGATAGGCCTTATGGTTTGTTGTTGGGAGGTGGTGGAAGATTATTGGCTGCACATTTGGTTCAAATTTTGGCCATTGTTGTTTGGGTGAGTGTTACTATGGGTACCTTGTTTTTTATTCTTCATAAATTGAATTTGCTTAGGAGTTCACATGAAGAAGAGATGGCTGGATTGGATTTAACTAGCCATGGTGGATTGGCTTATCAGTACCATGAAGAGCCTGAAGGACGTTCCAAGAAACGTGCAACTGAAATATGA
Protein sequence

>MS.gene09908.t1

MTSFTCSASDLHALLGSGANSTAAAEYICNGFNTIANKFIDTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFFYIFGFAFAFGTPSNGFIGKHFFGLSDFPSQSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVSYLIYSSFLTGLVYPIVAHWFWSADGWGSPARSENLLFGSGVIDFAGCGVVHLVGAVAGFWGALIEGPRIGRFDHEGKGVSMRGHSGTLVVMGTFLLWFGWYGFNPGSFLNILKTYGDSGNYYGQWSAIGRTAVTTTLAGCTAALTTLFGKRLQTGHWNVTDVCNGLLGGFAAITAGCSVVDPWAAIVCGFVAAWVLIGCNLLAEKFQYDDPLEAAQLHGGCGTWGIIFTALFAKKQYVKEVYGGSPDRPYGLLLGGGGRLLAAHLVQILAIVVWVSVTMGTLFFILHKLNLLRSSHEEEMAGLDLTSHGGLAYQYHEEPEGRSKKRATEI