AlfalfaGEDB | MS.gene21282

M. sativa cultivar XinJiangDaYe / MS.gene21282

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF02176.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21282.t1	XP_003615348.2	86.3	146	20	0	1	146	1	146	3.40E-68	267.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21282.t1	Q6GPH4	23.8	130	99	0	10	139	6	135	1.3e-07	57.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21282.t1	G7JYI6	86.3	146	20	0	1	146	1	146	2.5e-68	267.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049822	MS.gene21282	0.806567	7.73E-50	-1.69E-46
MS.gene050114	MS.gene21282	0.813218	2.86E-51	-1.69E-46
MS.gene050317	MS.gene21282	0.811312	7.46E-51	-1.69E-46
MS.gene050654	MS.gene21282	0.801886	7.29E-49	-1.69E-46
MS.gene051184	MS.gene21282	0.808195	3.49E-50	-1.69E-46
MS.gene051831	MS.gene21282	0.80272	4.91E-49	-1.69E-46
MS.gene052052	MS.gene21282	0.802875	4.56E-49	-1.69E-46
MS.gene052434	MS.gene21282	0.803696	3.08E-49	-1.69E-46
MS.gene052932	MS.gene21282	0.802444	5.60E-49	-1.69E-46
MS.gene053298	MS.gene21282	0.805092	1.58E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21282.t1	MTR_5g066840	97.260	146	4	1	146	1	146	1.89e-104	297
MS.gene21282.t1	MTR_3g111440	73.288	146	39	1	146	1	146	1.04e-80	237
MS.gene21282.t1	MTR_3g111440	73.288	146	39	1	146	1	146	1.65e-80	234
MS.gene21282.t1	MTR_5g066840	96.512	86	3	61	146	6	91	1.96e-57	176
MS.gene21282.t1	MTR_3g099560	69.231	39	12	68	106	24	62	2.31e-12	59.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21282.t1	AT1G09920	64.789	142	50	0	1	142	1	142	2.56e-69	208

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Find 26 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATACAATCATGAAGCC+GGG	0.583376	5.1:-51798533	MS.gene21282:CDS
AATCATGAAGCCGGGTGCAA+TGG	0.534643	5.1:-51798525	MS.gene21282:CDS
AATTGATCTAGCTGAGCATC+AGG	0.477671	5.1:-51798702	MS.gene21282:intron
ATACCTTGTAGGAAGTATGC+GGG	0.587345	5.1:-51798605	MS.gene21282:intron
ATAGCACTGTGGGCTCTTCA+AGG	0.460786	5.1:-51798494	MS.gene21282:intron
ATCTTGAATGCCATTGCACC+CGG	0.539175	5.1:+51798515	None:intergenic
ATGCAAAGTTTGTGGTGATA+TGG	0.380841	5.1:-51800391	MS.gene21282:CDS
CAGGTGAAAACTGCCTTAAA+AGG	0.393470	5.1:-51798763	MS.gene21282:CDS
CATACCTTGTAGGAAGTATG+CGG	0.643177	5.1:-51798606	MS.gene21282:intron
CTACTAGTACATGTTCTCAC+TGG	0.595693	5.1:-51800868	MS.gene21282:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAATGGAGATTGTAGA+GGG	-	chr5.1:51799558-51799577	MS.gene21282:intron	30.0%
AAATTGCAAAAAATTTGGGC+CGG	-	chr5.1:51798956-51798975	MS.gene21282:intron	30.0%
ACAAAAATGTGGATTTGTGT+AGG	-	chr5.1:51800229-51800248	MS.gene21282:intron	30.0%
ACCATTCTTTAAACTCAGAA+CGG	+	chr5.1:51800778-51800797	None:intergenic	30.0%
ACGAAAATCTCAAATAATGG+AGG	-	chr5.1:51799092-51799111	MS.gene21282:intron	30.0%
AGAAATTGCCCAATTTATAG+GGG	-	chr5.1:51798900-51798919	MS.gene21282:intron	30.0%
ATTTCTGCAAAATTGAACCT+TGG	+	chr5.1:51799019-51799038	None:intergenic	30.0%
ATTTGATCCTTGCAACTTAT+TGG	+	chr5.1:51798446-51798465	None:intergenic	30.0%
CTCATAGTTTACTGATAAGT+TGG	-	chr5.1:51799977-51799996	MS.gene21282:intron	30.0%
CTTCAAAAATGCAAAGTTTG+TGG	-	chr5.1:51798670-51798689	MS.gene21282:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	51798179	51800912	51798179	ID=MS.gene21282
chr5.1	mRNA	51798179	51800912	51798179	ID=MS.gene21282.t1;Parent=MS.gene21282
chr5.1	exon	51800869	51800912	51800869	ID=MS.gene21282.t1.exon1;Parent=MS.gene21282.t1
chr5.1	CDS	51800869	51800912	51800869	ID=cds.MS.gene21282.t1;Parent=MS.gene21282.t1
chr5.1	exon	51800344	51800479	51800344	ID=MS.gene21282.t1.exon2;Parent=MS.gene21282.t1
chr5.1	CDS	51800344	51800479	51800344	ID=cds.MS.gene21282.t1;Parent=MS.gene21282.t1
chr5.1	exon	51798703	51798840	51798703	ID=MS.gene21282.t1.exon3;Parent=MS.gene21282.t1
chr5.1	CDS	51798703	51798840	51798703	ID=cds.MS.gene21282.t1;Parent=MS.gene21282.t1
chr5.1	exon	51798495	51798616	51798495	ID=MS.gene21282.t1.exon4;Parent=MS.gene21282.t1
chr5.1	CDS	51798495	51798616	51798495	ID=cds.MS.gene21282.t1;Parent=MS.gene21282.t1
chr5.1	exon	51798179	51798215	51798179	ID=MS.gene21282.t1.exon5;Parent=MS.gene21282.t1
chr5.1	CDS	51798179	51798215	51798179	ID=cds.MS.gene21282.t1;Parent=MS.gene21282.t1

Gene Sequence

>MS.gene21282

ATGGATTCTTTGTTGGATCAAGCTACTAGTACATGTTCTCACTGGTAAAACAAACACATGAAATTCTCTACAATTCATTTTTAATTATTTATATTTGTCTCCTCTGATTATATTACGGTTTAAATATGATTTTATTCCCTGCAATTAATGTGTTTTTATTTATTTTAATCTGGTAAATTTTCTTGTTTAGATTCAGTTTCTGAAAATTATTAAATTGTTGTTTTTTACTATCATACATGAAACATTAGAATCATGTCACGTGTTCCAATAAGTTGCAAGGATCAAATTCAAACAAAAAAAAACTTGCAGGATTAAAACCAAAAAACACCTATTTAATCTATGTTAAGTTTTATGGGAAATTGTAATCTTAGAAATTTTATGATGATGATGATGATGATGATGATGATATGTGTTTTTGATTTAATGGTTTCAGTGGTCGAGCTATTCCTGTTGCGAATGTTGATTTGCATTATGCTCATTGCTCAAGGAAACTTCAAAAATGCAAAGTTTGTGGTGATATGGTTCCTAGAAACAATGCTGAGGATCACTATTTAACCACTCATGCGCCAGTATGTCGAGTTTGTGTTGTTTTTACCTTTTTTTTTACAGCTTCCAAGCAGTGGCGGAGCCAGGATTTTTATAAAGCCCGGTCGAAAAAAAATTTGCAATACATTTATAGGGTTTTACATAAGAAATTGCAAGCAAATAATAAAAAATTTAAAGAAATTGCCCAATTTATAGGGGTTTATATAAGAAATTCAAGGGGATTTACATAAGAAATTGCAAAAAATTTGGGCCGGAGCCCGGGCTCGCCGGGCCTTAGAACCGCCCCTGCTTCCAAGGTTCAATTTTGCAGAAATTTGTGATAAATCTATGAAGTTCATGTTACTATGAAATGAAGAAAAAATAGGGAACGAAAATCTCAAATAATGGAGGTTTAATTCCACCTCATTAAATAATAGTAAGGCTTGAATATGCTAGCTGCGAAACACTGACACAGACATCGGACACCGGACACGACACTAATACTGATACGTCGACACGGGTGATAATTTAAGAAAATAAATGAATTGAATGTAAACACATGTGTCAGTGTCACACCAACGCATGTTGGACACAGGGACATGCCTAATCTCAGAGATGTTCGTTATGTAATTTTATAATTCATTAAAGTCCTTACAATTTTTTTGGTTCAGAATGATCACCGGAATTTCATTTTTTATCTCGATTTTGGTCCATGCTGTTAGGTTGCTACTGATAACTATTAAGGTGATACCACCTCAGCATATAAGTGACAAGAAACTGGAGTTTTTGTGGGAAATGGTGGTGTAGCTGAGGAGAAGTGAGGCCGAGAACGGGATATTGTGAAGGAGGCATGGAAAACAATGGAGATTGTAGAGGGAGACATTCATTCTGGCAGTTGGAGAATAGAGGAAGTGGAAAGAGGGGACGTATAAAGATGAATTCAAATATTGTAATTGACTTGAAAACTGCACACAACAATGGTAAGGACCATACACCAGATTACACTTCTGGTAGTCACTTGAAGTGGCATATGGTAGTAATGGTTCTAGTCGTAGTGATTTTACGGTGCCGAGGTCAATGAGTTTGTTAGGAAAGGGATGAGAGAAAGTGATGTTGCCGGAAGGGAAGGAAGGGAGATAACGAGATATTAAATTGACGTAATATGACCCGTCAGTTTATATGCCCACCGCCACATCCCTCCATGGGATAGAAACCCCCACGGAGCCCTAGGCTCCTTTCATACTGTAACCATCATAAAATTTGTTGCGTATGGCTCATAGTTTACTGATAAGTTGGCAGACGCTGTATTCTATTTAAACACAAGTTTTACTCTGTAAACCCTGCGTTTGAAAAATAGTAAGGTATTGCAGCCGCATCACAGTTAGAGATGTAGGCAAAATTGTTTGAACTCCGCTGTCAACTATCGCATTCTCTGTTTGTGTTTTTTGTATACTTTTACTTTTGAAGCAGGGTTGCTGTTCTGACAATCAGATTTGGCATCCACTTTTATGTCAGTCTTTTATAAACAAAAATGTGGATTTGTGTAGGTTTCCTGTTCATTGTGCAGTGAGACAGTGGATCGTGATATCATAGATATCCATACAGGTGAAAACTGCCTTAAAAGGATTGTCACTTGTGACTTCTGTGAGTTCCCATTGCCAGCAATTGATCTAGCTGAGCATCAGGTAGTGCTTATGAAGTACTTTGGGTTAGACGATTTTTTTGACATTTGTTTTTGCACTAATTTCAGTTTGTAATTCATACCTTGTAGGAAGTATGCGGGAATCGAACAGAACTCTGTCAACTTTGTAACAAATATGTTAGACTTCGTGAAAGATACAATCATGAAGCCGGGTGCAATGGCATTCAAGATAGCACTGTGGGCTCTTCAAGGTAAGAAATATCACTATTCATGTGAATAAATTCTCTAACACATTGTTTATTTTTTTCGGTCGTGGACTTAAGGTAATTGTTCATATAGACCGAATCCTGCAATTTGTCTATCATCATAGTATGTGTAGGCTATTACACATGCATCACAGCAAAACATTCCTATTATGATTGTTACCAACCGTTCTGAGTTTAAAGAATGGTCGAGTATCCCCATTGTCTTCTACTATTTTTCTCTGGTTTTGAGTCACCTTTACGAGTATAAAATGCATGATTGCACAGTTACTGTCTCATATCAGTAATATACATCCAATCTTAA

Protein sequence

>MS.gene21282.t1

MDSLLDQATSTCSHCGRAIPVANVDLHYAHCSRKLQKCKVCGDMVPRNNAEDHYLTTHAPVSCSLCSETVDRDIIDIHTGENCLKRIVTCDFCEFPLPAIDLAEHQEVCGNRTELCQLCNKYVRLRERYNHEAGCNGIQDSTVGSSSYCLISVIYIQS