Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21282.t1 | XP_003615348.2 | 86.3 | 146 | 20 | 0 | 1 | 146 | 1 | 146 | 3.40E-68 | 267.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21282.t1 | Q6GPH4 | 23.8 | 130 | 99 | 0 | 10 | 139 | 6 | 135 | 1.3e-07 | 57.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21282.t1 | G7JYI6 | 86.3 | 146 | 20 | 0 | 1 | 146 | 1 | 146 | 2.5e-68 | 267.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049822 | MS.gene21282 | 0.806567 | 7.73E-50 | -1.69E-46 |
| MS.gene050114 | MS.gene21282 | 0.813218 | 2.86E-51 | -1.69E-46 |
| MS.gene050317 | MS.gene21282 | 0.811312 | 7.46E-51 | -1.69E-46 |
| MS.gene050654 | MS.gene21282 | 0.801886 | 7.29E-49 | -1.69E-46 |
| MS.gene051184 | MS.gene21282 | 0.808195 | 3.49E-50 | -1.69E-46 |
| MS.gene051831 | MS.gene21282 | 0.80272 | 4.91E-49 | -1.69E-46 |
| MS.gene052052 | MS.gene21282 | 0.802875 | 4.56E-49 | -1.69E-46 |
| MS.gene052434 | MS.gene21282 | 0.803696 | 3.08E-49 | -1.69E-46 |
| MS.gene052932 | MS.gene21282 | 0.802444 | 5.60E-49 | -1.69E-46 |
| MS.gene053298 | MS.gene21282 | 0.805092 | 1.58E-49 | -1.69E-46 |
| MS.gene053381 | MS.gene21282 | 0.81087 | 9.30E-51 | -1.69E-46 |
| MS.gene054479 | MS.gene21282 | 0.800217 | 1.60E-48 | -1.69E-46 |
| MS.gene056752 | MS.gene21282 | 0.800379 | 1.48E-48 | -1.69E-46 |
| MS.gene056849 | MS.gene21282 | 0.823029 | 1.73E-53 | -1.69E-46 |
| MS.gene058278 | MS.gene21282 | 0.801334 | 9.46E-49 | -1.69E-46 |
| MS.gene058429 | MS.gene21282 | 0.808625 | 2.82E-50 | -1.69E-46 |
| MS.gene060259 | MS.gene21282 | 0.810838 | 9.45E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21282.t1 | MTR_5g066840 | 97.260 | 146 | 4 | 0 | 1 | 146 | 1 | 146 | 1.89e-104 | 297 |
| MS.gene21282.t1 | MTR_3g111440 | 73.288 | 146 | 39 | 0 | 1 | 146 | 1 | 146 | 1.04e-80 | 237 |
| MS.gene21282.t1 | MTR_3g111440 | 73.288 | 146 | 39 | 0 | 1 | 146 | 1 | 146 | 1.65e-80 | 234 |
| MS.gene21282.t1 | MTR_5g066840 | 96.512 | 86 | 3 | 0 | 61 | 146 | 6 | 91 | 1.96e-57 | 176 |
| MS.gene21282.t1 | MTR_3g099560 | 69.231 | 39 | 12 | 0 | 68 | 106 | 24 | 62 | 2.31e-12 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21282.t1 | AT1G09920 | 64.789 | 142 | 50 | 0 | 1 | 142 | 1 | 142 | 2.56e-69 | 208 |
Find 26 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCCTCAGCATTGTTTCT+AGG | 0.266161 | 5.1:+51800366 | None:intergenic |
| TTCTACAATGGATTCTTTGT+TGG | 0.351141 | 5.1:-51800897 | None:intergenic |
| ATGCAAAGTTTGTGGTGATA+TGG | 0.380841 | 5.1:-51800391 | MS.gene21282:CDS |
| CAGGTGAAAACTGCCTTAAA+AGG | 0.393470 | 5.1:-51798763 | MS.gene21282:CDS |
| TGTCTCACTGCACAATGAAC+AGG | 0.436119 | 5.1:+51798814 | None:intergenic |
| TGCAAATCAACATTCGCAAC+AGG | 0.442632 | 5.1:+51800444 | None:intergenic |
| GTTAGAAGGAGGCTTAAGAT+TGG | 0.457712 | 5.1:+51798166 | None:intergenic |
| ATAGCACTGTGGGCTCTTCA+AGG | 0.460786 | 5.1:-51798494 | MS.gene21282:intron |
| TGCTCAGCTAGATCAATTGC+TGG | 0.462856 | 5.1:+51798707 | None:intergenic |
| CTAGATCAATTGCTGGCAAT+GGG | 0.474882 | 5.1:+51798714 | None:intergenic |
| AATTGATCTAGCTGAGCATC+AGG | 0.477671 | 5.1:-51798702 | MS.gene21282:intron |
| GCTAGATCAATTGCTGGCAA+TGG | 0.505485 | 5.1:+51798713 | None:intergenic |
| GAAAGATACAATCATGAAGC+CGG | 0.508252 | 5.1:-51798534 | MS.gene21282:CDS |
| TGCATTATGCTCATTGCTCA+AGG | 0.517451 | 5.1:-51800425 | MS.gene21282:CDS |
| GATATCATAGATATCCATAC+AGG | 0.527214 | 5.1:-51798782 | MS.gene21282:CDS |
| AATCATGAAGCCGGGTGCAA+TGG | 0.534643 | 5.1:-51798525 | MS.gene21282:CDS |
| ATCTTGAATGCCATTGCACC+CGG | 0.539175 | 5.1:+51798515 | None:intergenic |
| GGCATTCAAGATAGCACTGT+GGG | 0.555287 | 5.1:-51798504 | MS.gene21282:CDS |
| AAAGATACAATCATGAAGCC+GGG | 0.583376 | 5.1:-51798533 | MS.gene21282:CDS |
| ATACCTTGTAGGAAGTATGC+GGG | 0.587345 | 5.1:-51798605 | MS.gene21282:intron |
| CTACTAGTACATGTTCTCAC+TGG | 0.595693 | 5.1:-51800868 | MS.gene21282:intron |
| TCGACATACTGGCGCATGAG+TGG | 0.610315 | 5.1:+51800335 | None:intergenic |
| TTCATTGTGCAGTGAGACAG+TGG | 0.626137 | 5.1:-51798810 | MS.gene21282:CDS |
| CATACCTTGTAGGAAGTATG+CGG | 0.643177 | 5.1:-51798606 | MS.gene21282:intron |
| GGTTCCTAGAAACAATGCTG+AGG | 0.689228 | 5.1:-51800370 | MS.gene21282:CDS |
| TGGCATTCAAGATAGCACTG+TGG | 0.772147 | 5.1:-51798505 | MS.gene21282:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTATTTATTTTAATC+TGG | - | chr5.1:51798329-51798348 | MS.gene21282:intron | 10.0% |
| !! | AAAATTTGCAATACATTTAT+AGG | - | chr5.1:51798836-51798855 | MS.gene21282:intron | 15.0% |
| !! | AAACTTAACATAGATTAAAT+AGG | + | chr5.1:51798509-51798528 | None:intergenic | 15.0% |
| !! | AAATTTGCAATACATTTATA+GGG | - | chr5.1:51798837-51798856 | MS.gene21282:intron | 15.0% |
| !! | ATAAGAAATTGCAAAAAATT+TGG | - | chr5.1:51798951-51798970 | MS.gene21282:intron | 15.0% |
| !! | TAAGAAATTGCAAAAAATTT+GGG | - | chr5.1:51798952-51798971 | MS.gene21282:intron | 15.0% |
| !! | TATGAAATGAAGAAAAAATA+GGG | - | chr5.1:51799068-51799087 | MS.gene21282:intron | 15.0% |
| !!! | AACACATTGTTTATTTTTTT+CGG | - | chr5.1:51800633-51800652 | MS.gene21282:intron | 15.0% |
| !!! | TAATCTATGTTAAGTTTTAT+GGG | - | chr5.1:51798512-51798531 | MS.gene21282:CDS | 15.0% |
| !!! | TTAATCTATGTTAAGTTTTA+TGG | - | chr5.1:51798511-51798530 | MS.gene21282:CDS | 15.0% |
| !! | AATAAAAACACATTAATTGC+AGG | + | chr5.1:51798319-51798338 | None:intergenic | 20.0% |
| !! | ATAAAAACACATTAATTGCA+GGG | + | chr5.1:51798318-51798337 | None:intergenic | 20.0% |
| !! | CTATGAAATGAAGAAAAAAT+AGG | - | chr5.1:51799067-51799086 | MS.gene21282:intron | 20.0% |
| !! | GGTTTATATAAGAAATTCAA+GGG | - | chr5.1:51798921-51798940 | MS.gene21282:intron | 20.0% |
| !! | GTTTATATAAGAAATTCAAG+GGG | - | chr5.1:51798922-51798941 | MS.gene21282:intron | 20.0% |
| !! | TATATAAACCCCTATAAATT+GGG | + | chr5.1:51798911-51798930 | None:intergenic | 20.0% |
| !! | TTATATAAACCCCTATAAAT+TGG | + | chr5.1:51798912-51798931 | None:intergenic | 20.0% |
| !!! | GATATGTGTTTTTGATTTAA+TGG | - | chr5.1:51798583-51798602 | MS.gene21282:CDS | 20.0% |
| !!! | GTCTTTTATAAACAAAAATG+TGG | - | chr5.1:51800218-51800237 | MS.gene21282:intron | 20.0% |
| !!! | TAAAGTCCTTACAATTTTTT+TGG | - | chr5.1:51799347-51799366 | MS.gene21282:intron | 20.0% |
| !!! | TAGATTAAATAGGTGTTTTT+TGG | + | chr5.1:51798499-51798518 | None:intergenic | 20.0% |
| !!! | TTCATTTTTTATCTCGATTT+TGG | - | chr5.1:51799390-51799409 | MS.gene21282:intron | 20.0% |
| ! | AAAAATAGTAGAAGACAATG+GGG | + | chr5.1:51800808-51800827 | None:intergenic | 25.0% |
| ! | AAAGAAATTGCCCAATTTAT+AGG | - | chr5.1:51798898-51798917 | MS.gene21282:intron | 25.0% |
| ! | AAGAAATTGCCCAATTTATA+GGG | - | chr5.1:51798899-51798918 | MS.gene21282:intron | 25.0% |
| ! | AGAAAAATAGTAGAAGACAA+TGG | + | chr5.1:51800810-51800829 | None:intergenic | 25.0% |
| ! | AGCCTTACTATTATTTAATG+AGG | + | chr5.1:51799128-51799147 | None:intergenic | 25.0% |
| ! | ATAAAAGACTGACATAAAAG+TGG | + | chr5.1:51800207-51800226 | None:intergenic | 25.0% |
| ! | CACCTCATTAAATAATAGTA+AGG | - | chr5.1:51799123-51799142 | MS.gene21282:intron | 25.0% |
| ! | CGAGATAAAAAATGAAATTC+CGG | + | chr5.1:51799386-51799405 | None:intergenic | 25.0% |
| ! | CTTACTATTATTTAATGAGG+TGG | + | chr5.1:51799125-51799144 | None:intergenic | 25.0% |
| ! | GAAAAATAGTAGAAGACAAT+GGG | + | chr5.1:51800809-51800828 | None:intergenic | 25.0% |
| ! | GGGTTTATATAAGAAATTCA+AGG | - | chr5.1:51798920-51798939 | MS.gene21282:intron | 25.0% |
| ! | TCAAACAAAAAAAAACTTGC+AGG | - | chr5.1:51798466-51798485 | MS.gene21282:intron | 25.0% |
| ! | TCTGAACCAAAAAAATTGTA+AGG | + | chr5.1:51799356-51799375 | None:intergenic | 25.0% |
| ! | TTAAACCGTAATATAATCAG+AGG | + | chr5.1:51798282-51798301 | None:intergenic | 25.0% |
| !! | ATACGCAACAAATTTTATGA+TGG | + | chr5.1:51799955-51799974 | None:intergenic | 25.0% |
| !!! | ATACTTTTACTTTTGAAGCA+GGG | - | chr5.1:51800153-51800172 | MS.gene21282:intron | 25.0% |
| !!! | ATCATAAAATTTGTTGCGTA+TGG | - | chr5.1:51799954-51799973 | MS.gene21282:intron | 25.0% |
| !!! | ATTGCAAATTTTTTTTCGAC+CGG | + | chr5.1:51798828-51798847 | None:intergenic | 25.0% |
| !!! | TATACTTTTACTTTTGAAGC+AGG | - | chr5.1:51800152-51800171 | MS.gene21282:intron | 25.0% |
| !!! | TTTTGATTTAATGGTTTCAG+TGG | - | chr5.1:51798592-51798611 | MS.gene21282:CDS | 25.0% |
| AAAACAATGGAGATTGTAGA+GGG | - | chr5.1:51799558-51799577 | MS.gene21282:intron | 30.0% | |
| AAATTGCAAAAAATTTGGGC+CGG | - | chr5.1:51798956-51798975 | MS.gene21282:intron | 30.0% | |
| ACAAAAATGTGGATTTGTGT+AGG | - | chr5.1:51800229-51800248 | MS.gene21282:intron | 30.0% | |
| ACCATTCTTTAAACTCAGAA+CGG | + | chr5.1:51800778-51800797 | None:intergenic | 30.0% | |
| ACGAAAATCTCAAATAATGG+AGG | - | chr5.1:51799092-51799111 | MS.gene21282:intron | 30.0% | |
| AGAAATTGCCCAATTTATAG+GGG | - | chr5.1:51798900-51798919 | MS.gene21282:intron | 30.0% | |
| ATTTCTGCAAAATTGAACCT+TGG | + | chr5.1:51799019-51799038 | None:intergenic | 30.0% | |
| ATTTGATCCTTGCAACTTAT+TGG | + | chr5.1:51798446-51798465 | None:intergenic | 30.0% | |
| CTCATAGTTTACTGATAAGT+TGG | - | chr5.1:51799977-51799996 | MS.gene21282:intron | 30.0% | |
| CTTCAAAAATGCAAAGTTTG+TGG | - | chr5.1:51798670-51798689 | MS.gene21282:intron | 30.0% | |
| CTTGGAAGCTGTAAAAAAAA+AGG | + | chr5.1:51798776-51798795 | None:intergenic | 30.0% | |
| GATATCATAGATATCCATAC+AGG | - | chr5.1:51800287-51800306 | MS.gene21282:intron | 30.0% | |
| GGAACGAAAATCTCAAATAA+TGG | - | chr5.1:51799089-51799108 | MS.gene21282:intron | 30.0% | |
| GTTGCTACTGATAACTATTA+AGG | - | chr5.1:51799426-51799445 | MS.gene21282:intron | 30.0% | |
| GTTTGTAATTCATACCTTGT+AGG | - | chr5.1:51800453-51800472 | MS.gene21282:CDS | 30.0% | |
| TATGATGATAGACAAATTGC+AGG | + | chr5.1:51800695-51800714 | None:intergenic | 30.0% | |
| TATGATGGTTACAGTATGAA+AGG | + | chr5.1:51799940-51799959 | None:intergenic | 30.0% | |
| TCTATCATCATAGTATGTGT+AGG | - | chr5.1:51800703-51800722 | MS.gene21282:intron | 30.0% | |
| TGTCTCCTCTGATTATATTA+CGG | - | chr5.1:51798274-51798293 | MS.gene21282:intron | 30.0% | |
| ! | CATGCATTTTATACTCGTAA+AGG | + | chr5.1:51800847-51800866 | None:intergenic | 30.0% |
| ! | TAGTGCTTATGAAGTACTTT+GGG | - | chr5.1:51800390-51800409 | MS.gene21282:CDS | 30.0% |
| ! | TTCTAGTCGTAGTGATTTTA+CGG | - | chr5.1:51799747-51799766 | MS.gene21282:intron | 30.0% |
| !! | CTTACTATTTTTCAAACGCA+GGG | + | chr5.1:51800045-51800064 | None:intergenic | 30.0% |
| !! | TCAATGAGTTTGTTAGGAAA+GGG | - | chr5.1:51799778-51799797 | MS.gene21282:intron | 30.0% |
| !! | TGTCTTCTACTATTTTTCTC+TGG | - | chr5.1:51800811-51800830 | MS.gene21282:intron | 30.0% |
| !!! | TTGCAAATTTTTTTTCGACC+GGG | + | chr5.1:51798827-51798846 | None:intergenic | 30.0% |
| !!! | TTGTTTATTTTTTTCGGTCG+TGG | - | chr5.1:51800639-51800658 | MS.gene21282:intron | 30.0% |
| AAAATTGAACCTTGGAAGCA+GGG | + | chr5.1:51799011-51799030 | None:intergenic | 35.0% | |
| AAAGATACAATCATGAAGCC+GGG | - | chr5.1:51800536-51800555 | MS.gene21282:intron | 35.0% | |
| ATGCAAAGTTTGTGGTGATA+TGG | - | chr5.1:51798678-51798697 | MS.gene21282:intron | 35.0% | |
| CCTGCGTTTGAAAAATAGTA+AGG | - | chr5.1:51800043-51800062 | MS.gene21282:intron | 35.0% | |
| GAAAACAATGGAGATTGTAG+AGG | - | chr5.1:51799557-51799576 | MS.gene21282:intron | 35.0% | |
| GAAAGATACAATCATGAAGC+CGG | - | chr5.1:51800535-51800554 | MS.gene21282:intron | 35.0% | |
| GATAGACAAATTGCAGGATT+CGG | + | chr5.1:51800689-51800708 | None:intergenic | 35.0% | |
| GCATATAAGTGACAAGAAAC+TGG | - | chr5.1:51799462-51799481 | MS.gene21282:intron | 35.0% | |
| TTCTTTAAACTCAGAACGGT+TGG | + | chr5.1:51800774-51800793 | None:intergenic | 35.0% | |
| TTGAAAACTGCACACAACAA+TGG | - | chr5.1:51799662-51799681 | MS.gene21282:intron | 35.0% | |
| ! | ACAAGAAACTGGAGTTTTTG+TGG | - | chr5.1:51799473-51799492 | MS.gene21282:intron | 35.0% |
| ! | ACCGTTCTGAGTTTAAAGAA+TGG | - | chr5.1:51800774-51800793 | MS.gene21282:intron | 35.0% |
| ! | CAAGAAACTGGAGTTTTTGT+GGG | - | chr5.1:51799474-51799493 | MS.gene21282:intron | 35.0% |
| ! | CACAAGTGACAATCCTTTTA+AGG | + | chr5.1:51800322-51800341 | None:intergenic | 35.0% |
| ! | GTAGTGCTTATGAAGTACTT+TGG | - | chr5.1:51800389-51800408 | MS.gene21282:CDS | 35.0% |
| ! | TTCTTGTCACTTATATGCTG+AGG | + | chr5.1:51799460-51799479 | None:intergenic | 35.0% |
| !! | CCTTACTATTTTTCAAACGC+AGG | + | chr5.1:51800046-51800065 | None:intergenic | 35.0% |
| !! | CGGTTGGTAACAATCATAAT+AGG | + | chr5.1:51800758-51800777 | None:intergenic | 35.0% |
| !! | GTCAATGAGTTTGTTAGGAA+AGG | - | chr5.1:51799777-51799796 | MS.gene21282:intron | 35.0% |
| !! | TAACGAACATCTCTGAGATT+AGG | + | chr5.1:51799309-51799328 | None:intergenic | 35.0% |
| !!! | TTTTGGTTCAGAATGATCAC+CGG | - | chr5.1:51799364-51799383 | MS.gene21282:intron | 35.0% |
| AAATTGAACCTTGGAAGCAG+GGG | + | chr5.1:51799010-51799029 | None:intergenic | 40.0% | |
| AACTGCACACAACAATGGTA+AGG | - | chr5.1:51799667-51799686 | MS.gene21282:intron | 40.0% | |
| AATAGAGGAAGTGGAAAGAG+GGG | - | chr5.1:51799605-51799624 | MS.gene21282:intron | 40.0% | |
| AATTGATCTAGCTGAGCATC+AGG | - | chr5.1:51800367-51800386 | MS.gene21282:CDS | 40.0% | |
| ACAACACAAACTCGACATAC+TGG | + | chr5.1:51798748-51798767 | None:intergenic | 40.0% | |
| ACGTGTTCCAATAAGTTGCA+AGG | - | chr5.1:51798436-51798455 | MS.gene21282:intron | 40.0% | |
| AGAATAGAGGAAGTGGAAAG+AGG | - | chr5.1:51799603-51799622 | MS.gene21282:intron | 40.0% | |
| ATCAGTATTAGTGTCGTGTC+CGG | + | chr5.1:51799192-51799211 | None:intergenic | 40.0% | |
| ATGAGAGAAAGTGATGTTGC+CGG | - | chr5.1:51799801-51799820 | MS.gene21282:intron | 40.0% | |
| CAAAATTGAACCTTGGAAGC+AGG | + | chr5.1:51799012-51799031 | None:intergenic | 40.0% | |
| CAGGTGAAAACTGCCTTAAA+AGG | - | chr5.1:51800306-51800325 | MS.gene21282:intron | 40.0% | |
| CATACACCAGATTACACTTC+TGG | - | chr5.1:51799692-51799711 | MS.gene21282:intron | 40.0% | |
| CCTAACAAACTCATTGACCT+CGG | + | chr5.1:51799775-51799794 | None:intergenic | 40.0% | |
| CTAATACTGATACGTCGACA+CGG | - | chr5.1:51799201-51799220 | MS.gene21282:intron | 40.0% | |
| CTACATCTCTAACTGTGATG+CGG | + | chr5.1:51800077-51800096 | None:intergenic | 40.0% | |
| CTACTAGTACATGTTCTCAC+TGG | - | chr5.1:51798201-51798220 | MS.gene21282:intron | 40.0% | |
| CTAGATCAATTGCTGGCAAT+GGG | + | chr5.1:51800358-51800377 | None:intergenic | 40.0% | |
| GAAGTGGCATATGGTAGTAA+TGG | - | chr5.1:51799724-51799743 | MS.gene21282:intron | 40.0% | |
| GAATAGAGGAAGTGGAAAGA+GGG | - | chr5.1:51799604-51799623 | MS.gene21282:intron | 40.0% | |
| GCTGTTCTGACAATCAGATT+TGG | - | chr5.1:51800178-51800197 | MS.gene21282:intron | 40.0% | |
| TAATACTGATACGTCGACAC+GGG | - | chr5.1:51799202-51799221 | MS.gene21282:intron | 40.0% | |
| TACAGTATGAAAGGAGCCTA+GGG | + | chr5.1:51799931-51799950 | None:intergenic | 40.0% | |
| TAGTCACTTGAAGTGGCATA+TGG | - | chr5.1:51799715-51799734 | MS.gene21282:intron | 40.0% | |
| TGCAAATCAACATTCGCAAC+AGG | + | chr5.1:51798628-51798647 | None:intergenic | 40.0% | |
| TGCATTATGCTCATTGCTCA+AGG | - | chr5.1:51798644-51798663 | MS.gene21282:intron | 40.0% | |
| TTACAGTATGAAAGGAGCCT+AGG | + | chr5.1:51799932-51799951 | None:intergenic | 40.0% | |
| ! | ACCGGGCTTTATAAAAATCC+TGG | + | chr5.1:51798810-51798829 | None:intergenic | 40.0% |
| ! | ACTGGAGTTTTTGTGGGAAA+TGG | - | chr5.1:51799480-51799499 | MS.gene21282:intron | 40.0% |
| ! | ATACCTTGTAGGAAGTATGC+GGG | - | chr5.1:51800464-51800483 | MS.gene21282:intron | 40.0% |
| ! | CAGAAGTGTAATCTGGTGTA+TGG | + | chr5.1:51799694-51799713 | None:intergenic | 40.0% |
| ! | CATACCTTGTAGGAAGTATG+CGG | - | chr5.1:51800463-51800482 | MS.gene21282:intron | 40.0% |
| ! | GCCAGGATTTTTATAAAGCC+CGG | - | chr5.1:51798806-51798825 | MS.gene21282:CDS | 40.0% |
| ! | TAAGGCAGTTTTCACCTGTA+TGG | + | chr5.1:51800304-51800323 | None:intergenic | 40.0% |
| ! | TGACTACCAGAAGTGTAATC+TGG | + | chr5.1:51799701-51799720 | None:intergenic | 40.0% |
| ! | TGATCCTCAGCATTGTTTCT+AGG | + | chr5.1:51798706-51798725 | None:intergenic | 40.0% |
| ! | TTGTCACTTATATGCTGAGG+TGG | + | chr5.1:51799457-51799476 | None:intergenic | 40.0% |
| ! | TTTTTACAGCTTCCAAGCAG+TGG | - | chr5.1:51798779-51798798 | MS.gene21282:CDS | 40.0% |
| !!! | TTTTTTCGGTCGTGGACTTA+AGG | - | chr5.1:51800647-51800666 | MS.gene21282:intron | 40.0% |
| AGAAAGTGATGTTGCCGGAA+GGG | - | chr5.1:51799806-51799825 | MS.gene21282:intron | 45.0% | |
| AGAACGGGATATTGTGAAGG+AGG | - | chr5.1:51799530-51799549 | MS.gene21282:intron | 45.0% | |
| ATCTTGAATGCCATTGCACC+CGG | + | chr5.1:51800557-51800576 | None:intergenic | 45.0% | |
| ATTCCCGCATACTTCCTACA+AGG | + | chr5.1:51800470-51800489 | None:intergenic | 45.0% | |
| CAGTTGGAGAATAGAGGAAG+TGG | - | chr5.1:51799596-51799615 | MS.gene21282:intron | 45.0% | |
| CCTTCACAATATCCCGTTCT+CGG | + | chr5.1:51799530-51799549 | None:intergenic | 45.0% | |
| CGAAACACTGACACAGACAT+CGG | - | chr5.1:51799163-51799182 | MS.gene21282:intron | 45.0% | |
| CGCATCACAGTTAGAGATGT+AGG | - | chr5.1:51800075-51800094 | MS.gene21282:intron | 45.0% | |
| CTTCTGGTAGTCACTTGAAG+TGG | - | chr5.1:51799708-51799727 | MS.gene21282:intron | 45.0% | |
| GAGAATGCGATAGTTGACAG+CGG | + | chr5.1:51800117-51800136 | None:intergenic | 45.0% | |
| GAGACATTCATTCTGGCAGT+TGG | - | chr5.1:51799580-51799599 | MS.gene21282:intron | 45.0% | |
| GCTAGATCAATTGCTGGCAA+TGG | + | chr5.1:51800359-51800378 | None:intergenic | 45.0% | |
| GGCATTCAAGATAGCACTGT+GGG | - | chr5.1:51800565-51800584 | MS.gene21282:intron | 45.0% | |
| GGTTCCTAGAAACAATGCTG+AGG | - | chr5.1:51798699-51798718 | MS.gene21282:intron | 45.0% | |
| GTAGAGGGAGACATTCATTC+TGG | - | chr5.1:51799573-51799592 | MS.gene21282:intron | 45.0% | |
| TCAGTAGCAACCTAACAGCA+TGG | + | chr5.1:51799417-51799436 | None:intergenic | 45.0% | |
| TGCTCAGCTAGATCAATTGC+TGG | + | chr5.1:51800365-51800384 | None:intergenic | 45.0% | |
| TGGCATTCAAGATAGCACTG+TGG | - | chr5.1:51800564-51800583 | MS.gene21282:intron | 45.0% | |
| TGTCTCACTGCACAATGAAC+AGG | + | chr5.1:51800258-51800277 | None:intergenic | 45.0% | |
| TTCATTGTGCAGTGAGACAG+TGG | - | chr5.1:51800259-51800278 | MS.gene21282:intron | 45.0% | |
| TTCTGGCAGTTGGAGAATAG+AGG | - | chr5.1:51799590-51799609 | MS.gene21282:intron | 45.0% | |
| ! | CCGAGGTCAATGAGTTTGTT+AGG | - | chr5.1:51799772-51799791 | MS.gene21282:intron | 45.0% |
| ! | GAAGGAGGCATGGAAAACAA+TGG | - | chr5.1:51799545-51799564 | MS.gene21282:intron | 45.0% |
| ! | GGAGTTTTTGTGGGAAATGG+TGG | - | chr5.1:51799483-51799502 | MS.gene21282:intron | 45.0% |
| !! | CGATTTTGGTCCATGCTGTT+AGG | - | chr5.1:51799404-51799423 | MS.gene21282:intron | 45.0% |
| AAAAAATTTGGGCCGGAGCC+CGG | - | chr5.1:51798963-51798982 | MS.gene21282:intron | 50.0% | |
| AATCATGAAGCCGGGTGCAA+TGG | - | chr5.1:51800544-51800563 | MS.gene21282:intron | 50.0% | |
| ACCAACGCATGTTGGACACA+GGG | - | chr5.1:51799278-51799297 | MS.gene21282:intron | 50.0% | |
| AGTGTCACACCAACGCATGT+TGG | - | chr5.1:51799270-51799289 | MS.gene21282:intron | 50.0% | |
| ATAGCACTGTGGGCTCTTCA+AGG | - | chr5.1:51800575-51800594 | MS.gene21282:intron | 50.0% | |
| CCGAGAACGGGATATTGTGA+AGG | - | chr5.1:51799527-51799546 | MS.gene21282:intron | 50.0% | |
| CGGTGGGCATATAAACTGAC+GGG | + | chr5.1:51799873-51799892 | None:intergenic | 50.0% | |
| GAGAAAGTGATGTTGCCGGA+AGG | - | chr5.1:51799805-51799824 | MS.gene21282:intron | 50.0% | |
| GCGGTGGGCATATAAACTGA+CGG | + | chr5.1:51799874-51799893 | None:intergenic | 50.0% | |
| GGGATATTGTGAAGGAGGCA+TGG | - | chr5.1:51799535-51799554 | MS.gene21282:intron | 50.0% | |
| TATCTCCCTTCCTTCCCTTC+CGG | + | chr5.1:51799823-51799842 | None:intergenic | 50.0% | |
| TTACAGCTTCCAAGCAGTGG+CGG | - | chr5.1:51798782-51798801 | MS.gene21282:CDS | 50.0% | |
| TTCTATCCCATGGAGGGATG+TGG | + | chr5.1:51799896-51799915 | None:intergenic | 50.0% | |
| !! | GTAGTGATTTTACGGTGCCG+AGG | - | chr5.1:51799755-51799774 | MS.gene21282:intron | 50.0% |
| AAAAATTTGGGCCGGAGCCC+GGG | - | chr5.1:51798964-51798983 | MS.gene21282:intron | 55.0% | |
| AGGAGAAGTGAGGCCGAGAA+CGG | - | chr5.1:51799514-51799533 | MS.gene21282:intron | 55.0% | |
| AGTGATGTTGCCGGAAGGGA+AGG | - | chr5.1:51799810-51799829 | MS.gene21282:intron | 55.0% | |
| ATGTTGCCGGAAGGGAAGGA+AGG | - | chr5.1:51799814-51799833 | MS.gene21282:intron | 55.0% | |
| CACCAACGCATGTTGGACAC+AGG | - | chr5.1:51799277-51799296 | MS.gene21282:intron | 55.0% | |
| CCATGGGATAGAAACCCCCA+CGG | - | chr5.1:51799903-51799922 | MS.gene21282:intron | 55.0% | |
| CTGACACAGACATCGGACAC+CGG | - | chr5.1:51799170-51799189 | MS.gene21282:intron | 55.0% | |
| GGGGGTTTCTATCCCATGGA+GGG | + | chr5.1:51799902-51799921 | None:intergenic | 55.0% | |
| GGTGTAGCTGAGGAGAAGTG+AGG | - | chr5.1:51799504-51799523 | MS.gene21282:intron | 55.0% | |
| TATCCCATGGAGGGATGTGG+CGG | + | chr5.1:51799893-51799912 | None:intergenic | 55.0% | |
| TCCCTGTGTCCAACATGCGT+TGG | + | chr5.1:51799282-51799301 | None:intergenic | 55.0% | |
| TCGACATACTGGCGCATGAG+TGG | + | chr5.1:51798737-51798756 | None:intergenic | 55.0% | |
| TGGGGGTTTCTATCCCATGG+AGG | + | chr5.1:51799903-51799922 | None:intergenic | 55.0% | |
| TGTTGCCGGAAGGGAAGGAA+GGG | - | chr5.1:51799815-51799834 | MS.gene21282:intron | 55.0% | |
| TTGAACCTTGGAAGCAGGGG+CGG | + | chr5.1:51799007-51799026 | None:intergenic | 55.0% | |
| ! | GGGAAATGGTGGTGTAGCTG+AGG | - | chr5.1:51799494-51799513 | MS.gene21282:intron | 55.0% |
| AAAGGAGCCTAGGGCTCCGT+GGG | + | chr5.1:51799922-51799941 | None:intergenic | 60.0% | |
| CCGTGGGGGTTTCTATCCCA+TGG | + | chr5.1:51799906-51799925 | None:intergenic | 60.0% | |
| GGAGAAGTGAGGCCGAGAAC+GGG | - | chr5.1:51799515-51799534 | MS.gene21282:intron | 60.0% | |
| TAGAACCGCCCCTGCTTCCA+AGG | - | chr5.1:51798999-51799018 | MS.gene21282:intron | 60.0% | |
| TGGAAGCAGGGGCGGTTCTA+AGG | + | chr5.1:51798999-51799018 | None:intergenic | 60.0% | |
| AAGGAGCCTAGGGCTCCGTG+GGG | + | chr5.1:51799921-51799940 | None:intergenic | 65.0% | |
| AGAAACCCCCACGGAGCCCT+AGG | - | chr5.1:51799912-51799931 | MS.gene21282:intron | 65.0% | |
| ATCCTGGCTCCGCCACTGCT+TGG | + | chr5.1:51798794-51798813 | None:intergenic | 65.0% | |
| CCACCGCCACATCCCTCCAT+GGG | - | chr5.1:51799887-51799906 | MS.gene21282:intron | 65.0% | |
| CCATGGAGGGATGTGGCGGT+GGG | + | chr5.1:51799889-51799908 | None:intergenic | 65.0% | |
| GAAAGGAGCCTAGGGCTCCG+TGG | + | chr5.1:51799923-51799942 | None:intergenic | 65.0% | |
| ! | TTCCAAGCAGTGGCGGAGCC+AGG | - | chr5.1:51798789-51798808 | MS.gene21282:CDS | 65.0% |
| AGGAGCCTAGGGCTCCGTGG+GGG | + | chr5.1:51799920-51799939 | None:intergenic | 70.0% | |
| CCCACCGCCACATCCCTCCA+TGG | - | chr5.1:51799886-51799905 | MS.gene21282:intron | 70.0% | |
| CCCATGGAGGGATGTGGCGG+TGG | + | chr5.1:51799890-51799909 | None:intergenic | 70.0% | |
| !! | GCAGGGGCGGTTCTAAGGCC+CGG | + | chr5.1:51798994-51799013 | None:intergenic | 70.0% |
| !! | GTTCTAAGGCCCGGCGAGCC+CGG | + | chr5.1:51798985-51799004 | None:intergenic | 70.0% |
| !! | TTCTAAGGCCCGGCGAGCCC+GGG | + | chr5.1:51798984-51799003 | None:intergenic | 70.0% |
| ! | GGCCCGGCGAGCCCGGGCTC+CGG | + | chr5.1:51798978-51798997 | None:intergenic | 90.0% |
| ! | GGCCGGAGCCCGGGCTCGCC+GGG | - | chr5.1:51798973-51798992 | MS.gene21282:intron | 90.0% |
| ! | GGGCCGGAGCCCGGGCTCGC+CGG | - | chr5.1:51798972-51798991 | MS.gene21282:intron | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 51798179 | 51800912 | 51798179 | ID=MS.gene21282 |
| chr5.1 | mRNA | 51798179 | 51800912 | 51798179 | ID=MS.gene21282.t1;Parent=MS.gene21282 |
| chr5.1 | exon | 51800869 | 51800912 | 51800869 | ID=MS.gene21282.t1.exon1;Parent=MS.gene21282.t1 |
| chr5.1 | CDS | 51800869 | 51800912 | 51800869 | ID=cds.MS.gene21282.t1;Parent=MS.gene21282.t1 |
| chr5.1 | exon | 51800344 | 51800479 | 51800344 | ID=MS.gene21282.t1.exon2;Parent=MS.gene21282.t1 |
| chr5.1 | CDS | 51800344 | 51800479 | 51800344 | ID=cds.MS.gene21282.t1;Parent=MS.gene21282.t1 |
| chr5.1 | exon | 51798703 | 51798840 | 51798703 | ID=MS.gene21282.t1.exon3;Parent=MS.gene21282.t1 |
| chr5.1 | CDS | 51798703 | 51798840 | 51798703 | ID=cds.MS.gene21282.t1;Parent=MS.gene21282.t1 |
| chr5.1 | exon | 51798495 | 51798616 | 51798495 | ID=MS.gene21282.t1.exon4;Parent=MS.gene21282.t1 |
| chr5.1 | CDS | 51798495 | 51798616 | 51798495 | ID=cds.MS.gene21282.t1;Parent=MS.gene21282.t1 |
| chr5.1 | exon | 51798179 | 51798215 | 51798179 | ID=MS.gene21282.t1.exon5;Parent=MS.gene21282.t1 |
| chr5.1 | CDS | 51798179 | 51798215 | 51798179 | ID=cds.MS.gene21282.t1;Parent=MS.gene21282.t1 |
| Gene Sequence |
| Protein sequence |
