Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21391.t1 | XP_003591690.1 | 96.8 | 849 | 25 | 2 | 1 | 847 | 1 | 849 | 0.00E+00 | 1598.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21391.t1 | Q9SVD0 | 46.2 | 866 | 389 | 23 | 1 | 845 | 1 | 810 | 2.4e-172 | 607.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21391.t1 | G7I415 | 96.8 | 849 | 25 | 2 | 1 | 847 | 1 | 849 | 0.0e+00 | 1598.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051720 | MS.gene21391 | 0.831918 | 1.27E-55 | -1.69E-46 |
| MS.gene052000 | MS.gene21391 | 0.805089 | 1.58E-49 | -1.69E-46 |
| MS.gene055537 | MS.gene21391 | 0.813831 | 2.10E-51 | -1.69E-46 |
| MS.gene057082 | MS.gene21391 | 0.814544 | 1.46E-51 | -1.69E-46 |
| MS.gene058909 | MS.gene21391 | 0.805483 | 1.31E-49 | -1.69E-46 |
| MS.gene058912 | MS.gene21391 | 0.801849 | 7.41E-49 | -1.69E-46 |
| MS.gene05894 | MS.gene21391 | 0.839119 | 1.92E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21391.t1 | MTR_1g090640 | 96.820 | 849 | 25 | 2 | 1 | 847 | 1 | 849 | 0.0 | 1690 |
| MS.gene21391.t1 | MTR_1g057150 | 47.460 | 866 | 375 | 23 | 1 | 847 | 1 | 805 | 0.0 | 650 |
| MS.gene21391.t1 | MTR_2g038200 | 34.088 | 751 | 385 | 25 | 1 | 694 | 1 | 698 | 1.09e-101 | 338 |
| MS.gene21391.t1 | MTR_4g129230 | 29.885 | 870 | 453 | 34 | 1 | 784 | 1 | 799 | 3.81e-84 | 290 |
| MS.gene21391.t1 | MTR_4g127290 | 63.068 | 176 | 50 | 5 | 1 | 167 | 1 | 170 | 1.10e-53 | 201 |
| MS.gene21391.t1 | MTR_3g464150 | 26.107 | 881 | 500 | 30 | 11 | 787 | 10 | 843 | 2.11e-47 | 183 |
| MS.gene21391.t1 | MTR_1183s0010 | 58.451 | 142 | 46 | 3 | 709 | 845 | 148 | 281 | 1.92e-42 | 156 |
| MS.gene21391.t1 | MTR_1183s0010 | 70.423 | 71 | 18 | 2 | 99 | 167 | 28 | 97 | 6.14e-19 | 88.6 |
| MS.gene21391.t1 | MTR_5g071060 | 25.084 | 893 | 494 | 33 | 11 | 784 | 10 | 846 | 1.53e-37 | 152 |
| MS.gene21391.t1 | MTR_5g071060 | 25.256 | 879 | 477 | 32 | 11 | 784 | 10 | 813 | 1.31e-35 | 146 |
| MS.gene21391.t1 | MTR_1384s0010 | 55.556 | 126 | 31 | 4 | 1 | 123 | 1 | 104 | 9.08e-31 | 117 |
| MS.gene21391.t1 | MTR_3g070850 | 27.459 | 488 | 273 | 18 | 11 | 457 | 10 | 457 | 2.45e-26 | 116 |
| MS.gene21391.t1 | MTR_4g109450 | 21.033 | 794 | 506 | 32 | 24 | 784 | 17 | 722 | 2.18e-20 | 97.4 |
| MS.gene21391.t1 | MTR_4g109450 | 21.033 | 794 | 506 | 32 | 24 | 784 | 17 | 722 | 2.91e-20 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21391.t1 | AT3G52490 | 45.771 | 863 | 397 | 24 | 1 | 845 | 1 | 810 | 0.0 | 632 |
| MS.gene21391.t1 | AT5G57710 | 31.486 | 848 | 433 | 31 | 1 | 784 | 1 | 764 | 7.42e-96 | 322 |
| MS.gene21391.t1 | AT5G57130 | 36.860 | 586 | 258 | 18 | 1 | 490 | 1 | 570 | 3.15e-90 | 307 |
| MS.gene21391.t1 | AT4G29920 | 36.559 | 558 | 274 | 17 | 1 | 495 | 1 | 541 | 4.10e-88 | 301 |
| MS.gene21391.t1 | AT4G29920 | 36.577 | 555 | 275 | 17 | 1 | 495 | 1 | 538 | 5.81e-88 | 301 |
| MS.gene21391.t1 | AT4G30350 | 30.788 | 825 | 428 | 27 | 1 | 786 | 1 | 721 | 2.24e-82 | 284 |
| MS.gene21391.t1 | AT2G29970 | 26.202 | 832 | 492 | 26 | 11 | 781 | 10 | 780 | 2.14e-55 | 207 |
| MS.gene21391.t1 | AT1G07200 | 25.448 | 837 | 485 | 28 | 11 | 784 | 10 | 770 | 1.51e-47 | 183 |
| MS.gene21391.t1 | AT2G40130 | 31.738 | 397 | 222 | 14 | 11 | 382 | 10 | 382 | 1.13e-35 | 146 |
| MS.gene21391.t1 | AT2G40130 | 31.738 | 397 | 222 | 14 | 11 | 382 | 10 | 382 | 1.38e-35 | 145 |
| MS.gene21391.t1 | AT1G74310 | 25.161 | 310 | 197 | 11 | 11 | 313 | 4 | 285 | 1.41e-15 | 82.0 |
| MS.gene21391.t1 | AT1G74310 | 25.161 | 310 | 197 | 11 | 11 | 313 | 4 | 285 | 1.58e-15 | 81.6 |
Find 127 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCTTCCCTAGAAACTATT+TGG | 0.153510 | 1.4:-71730739 | MS.gene21391:CDS |
| AGAGGTGTTATTCTTTATTT+AGG | 0.203554 | 1.4:-71730944 | MS.gene21391:CDS |
| TTATTCAATGACTTGACTTT+TGG | 0.237281 | 1.4:-71730516 | MS.gene21391:CDS |
| GAGTAGTAGATTATGGCTTA+TGG | 0.242761 | 1.4:-71730804 | MS.gene21391:CDS |
| AGGCTTAAGGCTAAGTTCTT+TGG | 0.260826 | 1.4:+71731273 | None:intergenic |
| TCCTTCACTTTCTAATGCTT+TGG | 0.284347 | 1.4:-71731551 | MS.gene21391:CDS |
| TCCAACAAAGCCAACTAAAT+TGG | 0.291498 | 1.4:-71729855 | MS.gene21391:CDS |
| TATAATAACTCACACTCTTT+TGG | 0.298041 | 1.4:+71729805 | None:intergenic |
| AAGCCTTGTGAAAAGCTATA+TGG | 0.299255 | 1.4:-71730969 | MS.gene21391:CDS |
| GTCAAGAAAGCAATTGAAAA+TGG | 0.312420 | 1.4:-71729157 | MS.gene21391:CDS |
| TCACTTGAAGAAGCTGAGTT+TGG | 0.312758 | 1.4:+71729673 | None:intergenic |
| GAAGCTCCCAAATAGTTTCT+AGG | 0.313524 | 1.4:+71730732 | None:intergenic |
| TGAAATGGTTGTTTGAGTTT+TGG | 0.332695 | 1.4:-71730916 | MS.gene21391:CDS |
| TTTGACAAAAGATCTGGTTT+TGG | 0.333075 | 1.4:+71729709 | None:intergenic |
| TGTAACAACTTTATGACAAT+TGG | 0.336252 | 1.4:-71729367 | MS.gene21391:CDS |
| CAAATCTTGTTTGTCAAGAA+TGG | 0.341068 | 1.4:+71729942 | None:intergenic |
| GCTGAGTTTGGACTTGAGTT+AGG | 0.348418 | 1.4:+71729685 | None:intergenic |
| AGCACTTATTTGCAGAGATT+TGG | 0.350601 | 1.4:-71729259 | MS.gene21391:CDS |
| CTGCCAACAGGAATTGTAAA+AGG | 0.352420 | 1.4:+71730707 | None:intergenic |
| TCAACACAAAGTCCACTATT+AGG | 0.361857 | 1.4:-71731592 | MS.gene21391:CDS |
| AGTAGAGTTATGAGAGAAGC+TGG | 0.362568 | 1.4:-71731397 | MS.gene21391:CDS |
| GCCAATTTAGTTGGCTTTGT+TGG | 0.372056 | 1.4:+71729854 | None:intergenic |
| TTTATTTAGGTGATTTGAAA+TGG | 0.382295 | 1.4:-71730931 | MS.gene21391:CDS |
| CTATTGTTCTGTTGAACATA+TGG | 0.385946 | 1.4:-71730864 | MS.gene21391:CDS |
| TTCCTTTGAGATATTCTCTC+TGG | 0.389830 | 1.4:+71729414 | None:intergenic |
| TCAAGCTAAGGAGAGAAGTA+TGG | 0.390308 | 1.4:-71730541 | MS.gene21391:CDS |
| CAACATGAAGAGGTGTAACT+TGG | 0.394200 | 1.4:+71731740 | None:intergenic |
| TGCAGCTTTCAAACGTGCTC+AGG | 0.397418 | 1.4:-71731527 | MS.gene21391:CDS |
| AAGTAATCTAAACCTCTCTT+TGG | 0.399086 | 1.4:-71728987 | MS.gene21391:CDS |
| AGTTGATCACTTTACTCAAA+AGG | 0.402733 | 1.4:-71729182 | MS.gene21391:CDS |
| TCATTGTTAACACAATCTAT+AGG | 0.402916 | 1.4:+71731217 | None:intergenic |
| TTAAGGATCTCTGCAAGAAA+TGG | 0.403868 | 1.4:-71729999 | MS.gene21391:CDS |
| TCCTCATAGAGTGTTCTTCA+TGG | 0.406650 | 1.4:-71729218 | MS.gene21391:CDS |
| GCTATGCTTGCAACTTCAAC+AGG | 0.408305 | 1.4:-71731712 | MS.gene21391:CDS |
| GCCTAAGTTTGAACTTTGAC+AGG | 0.409277 | 1.4:-71730679 | MS.gene21391:intron |
| AAATTATAGGCCAATTTAGT+TGG | 0.410863 | 1.4:+71729845 | None:intergenic |
| TTTGTTGAAGAAACTTCAAT+TGG | 0.417218 | 1.4:+71731325 | None:intergenic |
| CCCTTCCCTAGAAACTATTT+GGG | 0.418380 | 1.4:-71730738 | MS.gene21391:CDS |
| ATAGGAAAATGCAAGACTTA+AGG | 0.420370 | 1.4:-71730016 | MS.gene21391:intron |
| AAGCCTCAAGTTCTTAGCCT+TGG | 0.424000 | 1.4:-71731256 | MS.gene21391:CDS |
| AGTAGTAGATTATGGCTTAT+GGG | 0.426917 | 1.4:-71730803 | MS.gene21391:CDS |
| TTAGGATTTGACAAAAGATC+TGG | 0.427273 | 1.4:+71729703 | None:intergenic |
| CCTCAAGTTCTTAGCCTTGG+TGG | 0.431448 | 1.4:-71731253 | MS.gene21391:CDS |
| TCAAGTGAGGAAAATGAAGT+TGG | 0.432178 | 1.4:+71729892 | None:intergenic |
| GGCTAAGAACTTGAGGCTTA+AGG | 0.443449 | 1.4:+71731260 | None:intergenic |
| GTAATGTTCCTATGGAGTTA+AGG | 0.445638 | 1.4:-71731075 | MS.gene21391:CDS |
| GTGGTGAGAGTAGTAGATTA+TGG | 0.446323 | 1.4:-71730811 | MS.gene21391:CDS |
| AAGTTACACAGTGGAAGATC+AGG | 0.449020 | 1.4:-71730343 | MS.gene21391:intron |
| TATAATTTCTGAACAAGAAA+AGG | 0.450081 | 1.4:-71729830 | MS.gene21391:CDS |
| AGAAGAAACACTATTATTGT+AGG | 0.450878 | 1.4:-71731157 | MS.gene21391:CDS |
| TTTGGAGATAAAGCAGGAGT+TGG | 0.452290 | 1.4:-71730498 | MS.gene21391:CDS |
| GAAAAGACCAAGAGATGAGT+TGG | 0.452465 | 1.4:-71729284 | MS.gene21391:CDS |
| GTGATGGAAAGGTTTGAGAT+AGG | 0.459316 | 1.4:-71731097 | MS.gene21391:CDS |
| CAAGATTCTCTGTGATGCCT+TGG | 0.460963 | 1.4:-71729593 | MS.gene21391:CDS |
| TGAGGAATCATCATTTCCTA+TGG | 0.464530 | 1.4:+71729327 | None:intergenic |
| GGAAGTTGAAAAGAAGTTTG+TGG | 0.464658 | 1.4:-71730999 | MS.gene21391:CDS |
| GATGATGATGATTGCTATGA+TGG | 0.465266 | 1.4:-71729766 | MS.gene21391:CDS |
| TGAATCATTTCTTTATGTTG+TGG | 0.465286 | 1.4:+71729559 | None:intergenic |
| TAAGGCTAAGTTCTTTGGAC+TGG | 0.466737 | 1.4:+71731278 | None:intergenic |
| AGCCTTGTGAAAAGCTATAT+GGG | 0.482010 | 1.4:-71730968 | MS.gene21391:CDS |
| GTTGATCACTTTACTCAAAA+GGG | 0.487558 | 1.4:-71729181 | MS.gene21391:CDS |
| AGAGGAACAGATTCACCATC+AGG | 0.492342 | 1.4:+71729121 | None:intergenic |
| AACATGGCTTCAAAATTGTA+AGG | 0.492394 | 1.4:-71730373 | MS.gene21391:CDS |
| CTCATAACTCTACTAACACT+TGG | 0.499188 | 1.4:+71731406 | None:intergenic |
| ACCTGTCAAAGTTCAAACTT+AGG | 0.500140 | 1.4:+71730678 | None:intergenic |
| AGCATTATCATGATCTTCAA+TGG | 0.505808 | 1.4:+71728952 | None:intergenic |
| TGAGATAGGTAATGTTCCTA+TGG | 0.506308 | 1.4:-71731083 | MS.gene21391:CDS |
| TCTCGATCGTTCCGCGTCGT+TGG | 0.506441 | 1.4:+71731500 | None:intergenic |
| CTTAGGCTTAGACTGCCAAC+AGG | 0.507333 | 1.4:+71730695 | None:intergenic |
| AAAAGACCAAGAGATGAGTT+GGG | 0.510626 | 1.4:-71729283 | MS.gene21391:CDS |
| GTTAACACAATCTATAGGCT+TGG | 0.510871 | 1.4:+71731222 | None:intergenic |
| GTGCTTCCCAACTCATCTCT+TGG | 0.513956 | 1.4:+71729277 | None:intergenic |
| ATATTCCTAAAACATATAAG+AGG | 0.515258 | 1.4:+71731031 | None:intergenic |
| AAAATCATAAGCAAGAAACT+TGG | 0.516183 | 1.4:-71729465 | MS.gene21391:CDS |
| TAATGCTGAGGGAGTAGCTA+AGG | 0.517190 | 1.4:-71731122 | MS.gene21391:CDS |
| TCTTGTTTGTCAAGAATGGA+AGG | 0.521069 | 1.4:+71729946 | None:intergenic |
| TCTTGAGTGAATTAGTAAAG+AGG | 0.523979 | 1.4:-71731180 | MS.gene21391:CDS |
| CCCAAATAGTTTCTAGGGAA+GGG | 0.525348 | 1.4:+71730738 | None:intergenic |
| TTTGTGTTGATGCAGGTAAA+CGG | 0.525462 | 1.4:+71731605 | None:intergenic |
| AAGCTCCCAAATAGTTTCTA+GGG | 0.525655 | 1.4:+71730733 | None:intergenic |
| ACTTTGATGATCCTCTATCA+TGG | 0.525748 | 1.4:+71729006 | None:intergenic |
| TAGCTAAGGGAGTGATGGAA+AGG | 0.526074 | 1.4:-71731108 | MS.gene21391:CDS |
| CATCATGCGCTGAAAACAAA+GGG | 0.540396 | 1.4:-71729036 | MS.gene21391:CDS |
| GAAAATGAAGTTGGTGATGA+AGG | 0.541235 | 1.4:+71729901 | None:intergenic |
| TCCCAAATAGTTTCTAGGGA+AGG | 0.541487 | 1.4:+71730737 | None:intergenic |
| GTGAAAAGCTATATGGGAAG+AGG | 0.543291 | 1.4:-71730962 | MS.gene21391:CDS |
| AGGGAAAGAGACCATGATAG+AGG | 0.549596 | 1.4:-71729017 | MS.gene21391:CDS |
| GAATATTGAGGACCTAATAG+TGG | 0.550025 | 1.4:+71731580 | None:intergenic |
| AGCTTCTTCAAGTGAAGCAG+TGG | 0.550112 | 1.4:-71729665 | MS.gene21391:CDS |
| TCCATGAAGAACACTCTATG+AGG | 0.550163 | 1.4:+71729217 | None:intergenic |
| TCAAGAGCTTTGCATTGAAG+AGG | 0.552190 | 1.4:+71731652 | None:intergenic |
| GCAGTTCAAGCTTGCCAACA+TGG | 0.553169 | 1.4:-71730389 | MS.gene21391:CDS |
| TTCTGTTGAACATATGGTGA+TGG | 0.562217 | 1.4:-71730858 | MS.gene21391:CDS |
| TCATCATGCGCTGAAAACAA+AGG | 0.563706 | 1.4:-71729037 | MS.gene21391:CDS |
| TCTTCAAGTGAAGCAGTGGA+TGG | 0.565452 | 1.4:-71729661 | MS.gene21391:CDS |
| AGAGAGTGTTTCTAATGCTG+AGG | 0.567960 | 1.4:-71731134 | MS.gene21391:CDS |
| TGGTGAATCTGTTCCTCTCA+AGG | 0.568633 | 1.4:-71729116 | MS.gene21391:CDS |
| CAAGAGCTTTGCATTGAAGA+GGG | 0.570256 | 1.4:+71731653 | None:intergenic |
| GTGAATCTAGCAACAAGAAG+AGG | 0.571262 | 1.4:-71731769 | MS.gene21391:CDS |
| ATGAGCACTTTCTCTTCCAT+AGG | 0.573200 | 1.4:-71729343 | MS.gene21391:CDS |
| TGTACATACCTTAACTCCAT+AGG | 0.576534 | 1.4:+71731067 | None:intergenic |
| AGTGGACTTTGTGTTGATGC+AGG | 0.576688 | 1.4:+71731598 | None:intergenic |
| GGGAGTAGCTAAGGGAGTGA+TGG | 0.580375 | 1.4:-71731113 | MS.gene21391:CDS |
| GTAGTAGATTATGGCTTATG+GGG | 0.580393 | 1.4:-71730802 | MS.gene21391:CDS |
| TTGTGGAAACTTGTTCTCCA+AGG | 0.583160 | 1.4:+71729576 | None:intergenic |
| GAAGGAGTGGTTGAATATTG+AGG | 0.588763 | 1.4:+71731568 | None:intergenic |
| AGCATTAGAAAGTGAAGGAG+TGG | 0.592161 | 1.4:+71731555 | None:intergenic |
| GAGAGTGTTTCTAATGCTGA+GGG | 0.596744 | 1.4:-71731133 | MS.gene21391:CDS |
| ATGACAATGGCATCCTTGAG+AGG | 0.610189 | 1.4:+71729103 | None:intergenic |
| CCACCAAGGCTAAGAACTTG+AGG | 0.610990 | 1.4:+71731253 | None:intergenic |
| CTTGTTTGTCAAGAATGGAA+GGG | 0.613568 | 1.4:+71729947 | None:intergenic |
| GGAAGTATAACAATTCCTGA+TGG | 0.615012 | 1.4:-71729136 | MS.gene21391:CDS |
| TATTCTTTCAAGATCATGAG+AGG | 0.617371 | 1.4:-71731856 | None:intergenic |
| ACCAAAGCATTAGAAAGTGA+AGG | 0.617721 | 1.4:+71731550 | None:intergenic |
| TTCACTACTGAAAATGACAA+TGG | 0.618443 | 1.4:+71729090 | None:intergenic |
| GATCATGATAATGCTGACAT+TGG | 0.618644 | 1.4:-71728944 | MS.gene21391:CDS |
| AATGCTGAGGGAGTAGCTAA+GGG | 0.618726 | 1.4:-71731121 | MS.gene21391:CDS |
| ATAGCACTAGCAACATGAAG+AGG | 0.621178 | 1.4:+71731730 | None:intergenic |
| AACATGAAGAGGTGTAACTT+GGG | 0.622427 | 1.4:+71731741 | None:intergenic |
| AGCCAGAGAGAATATCTCAA+AGG | 0.623199 | 1.4:-71729416 | MS.gene21391:CDS |
| TTATTATACACTGAAAGTGC+TGG | 0.631798 | 1.4:-71729790 | MS.gene21391:CDS |
| CTATATTCAGATCCAAAGAG+AGG | 0.642276 | 1.4:+71728975 | None:intergenic |
| TTATTTGCAGAGATTTGGTG+AGG | 0.656143 | 1.4:-71729254 | MS.gene21391:CDS |
| TCTTTCAAGATCATGAGAGG+AGG | 0.660285 | 1.4:-71731853 | None:intergenic |
| GGAAGAAAGAAGTTACACAG+TGG | 0.706086 | 1.4:-71730352 | MS.gene21391:CDS |
| GCTCAGGCTCACCAACGACG+CGG | 0.725959 | 1.4:-71731511 | MS.gene21391:CDS |
| GCTTGGTGTATGAACCACCA+AGG | 0.735446 | 1.4:+71731239 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAACAAAATTACTTTAA+TGG | - | chr1.4:71730520-71730539 | MS.gene21391:CDS | 10.0% |
| !! | AAAGATAAGAAAATAGAAAA+AGG | + | chr1.4:71730691-71730710 | None:intergenic | 15.0% |
| !! | ATATTCCTAAAACATATAAG+AGG | + | chr1.4:71729714-71729733 | None:intergenic | 20.0% |
| !! | TATAATTTCTGAACAAGAAA+AGG | - | chr1.4:71730912-71730931 | MS.gene21391:CDS | 20.0% |
| !! | TTTATTTAGGTGATTTGAAA+TGG | - | chr1.4:71729811-71729830 | MS.gene21391:CDS | 20.0% |
| !!! | TTCAGTTTGAAATTTTTGTA+CGG | - | chr1.4:71730619-71730638 | MS.gene21391:intron | 20.0% |
| !!! | TTTTAGGAATATTAGTAAAG+AGG | - | chr1.4:71729722-71729741 | MS.gene21391:CDS | 20.0% |
| !!! | TTTTCTTGTTCAGAAATTAT+AGG | + | chr1.4:71730913-71730932 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTCTATGTGAAAT+AGG | - | chr1.4:71730708-71730727 | MS.gene21391:CDS | 20.0% |
| ! | AAAATCATAAGCAAGAAACT+TGG | - | chr1.4:71731277-71731296 | MS.gene21391:CDS | 25.0% |
| ! | AAATTATAGGCCAATTTAGT+TGG | + | chr1.4:71730900-71730919 | None:intergenic | 25.0% |
| ! | AGAAGAAACACTATTATTGT+AGG | - | chr1.4:71729585-71729604 | MS.gene21391:CDS | 25.0% |
| ! | GAGATTAAAAAATTGGTTAG+TGG | - | chr1.4:71729906-71729925 | MS.gene21391:CDS | 25.0% |
| ! | GTCTTTATATATGCAAAAAC+AGG | - | chr1.4:71730661-71730680 | MS.gene21391:intron | 25.0% |
| ! | TCATTGTTAACACAATCTAT+AGG | + | chr1.4:71729528-71729547 | None:intergenic | 25.0% |
| ! | TGAATCATTTCTTTATGTTG+TGG | + | chr1.4:71731186-71731205 | None:intergenic | 25.0% |
| ! | TGTAACAACTTTATGACAAT+TGG | - | chr1.4:71731375-71731394 | MS.gene21391:CDS | 25.0% |
| ! | TTTGTTGAAGAAACTTCAAT+TGG | + | chr1.4:71729420-71729439 | None:intergenic | 25.0% |
| !! | TATAATAACTCACACTCTTT+TGG | + | chr1.4:71730940-71730959 | None:intergenic | 25.0% |
| !! | TTATTCAATGACTTGACTTT+TGG | - | chr1.4:71730226-71730245 | MS.gene21391:intron | 25.0% |
| !!! | AGAGGTGTTATTCTTTATTT+AGG | - | chr1.4:71729798-71729817 | MS.gene21391:CDS | 25.0% |
| !!! | TTATAGTGATTTTCAAGCTA+AGG | - | chr1.4:71730189-71730208 | MS.gene21391:intron | 25.0% |
| AAAAAATTGGTTAGTGGAAG+TGG | - | chr1.4:71729912-71729931 | MS.gene21391:CDS | 30.0% | |
| AACATGGCTTCAAAATTGTA+AGG | - | chr1.4:71730369-71730388 | MS.gene21391:CDS | 30.0% | |
| AAGTAATCTAAACCTCTCTT+TGG | - | chr1.4:71731755-71731774 | MS.gene21391:CDS | 30.0% | |
| AATAGTCTCATACACATACT+TGG | - | chr1.4:71730432-71730451 | MS.gene21391:CDS | 30.0% | |
| AGCATTATCATGATCTTCAA+TGG | + | chr1.4:71731793-71731812 | None:intergenic | 30.0% | |
| AGTAGTAGATTATGGCTTAT+GGG | - | chr1.4:71729939-71729958 | MS.gene21391:CDS | 30.0% | |
| AGTTGATCACTTTACTCAAA+AGG | - | chr1.4:71731560-71731579 | MS.gene21391:CDS | 30.0% | |
| ATAGGAAAATGCAAGACTTA+AGG | - | chr1.4:71730726-71730745 | MS.gene21391:CDS | 30.0% | |
| CAAGTGATGAAAAATCCAAA+AGG | - | chr1.4:71731436-71731455 | MS.gene21391:CDS | 30.0% | |
| CAAGTTACTGTGAACAAAAA+AGG | - | chr1.4:71729850-71729869 | MS.gene21391:CDS | 30.0% | |
| CTATTGTTCTGTTGAACATA+TGG | - | chr1.4:71729878-71729897 | MS.gene21391:CDS | 30.0% | |
| GTCAAGAAAGCAATTGAAAA+TGG | - | chr1.4:71731585-71731604 | MS.gene21391:CDS | 30.0% | |
| GTTGATCACTTTACTCAAAA+GGG | - | chr1.4:71731561-71731580 | MS.gene21391:CDS | 30.0% | |
| TCATTCCTGATCTACAAAAA+AGG | + | chr1.4:71731227-71731246 | None:intergenic | 30.0% | |
| TCTTGAGTGAATTAGTAAAG+AGG | - | chr1.4:71729562-71729581 | MS.gene21391:CDS | 30.0% | |
| TTAGGATTTGACAAAAGATC+TGG | + | chr1.4:71731042-71731061 | None:intergenic | 30.0% | |
| TTCACTACTGAAAATGACAA+TGG | + | chr1.4:71731655-71731674 | None:intergenic | 30.0% | |
| ! | CAAATCTTGTTTGTCAAGAA+TGG | + | chr1.4:71730803-71730822 | None:intergenic | 30.0% |
| ! | GTCTTCCTCTTATATGTTTT+AGG | - | chr1.4:71729706-71729725 | MS.gene21391:CDS | 30.0% |
| ! | TTATTATACACTGAAAGTGC+TGG | - | chr1.4:71730952-71730971 | MS.gene21391:CDS | 30.0% |
| ! | TTTGGATTTTTCATCACTTG+AGG | + | chr1.4:71731436-71731455 | None:intergenic | 30.0% |
| !! | GAACTAGCTAAAGTTGTTTT+TGG | - | chr1.4:71731348-71731367 | MS.gene21391:CDS | 30.0% |
| !! | GGTGATGGAGATTAAAAAAT+TGG | - | chr1.4:71729899-71729918 | MS.gene21391:CDS | 30.0% |
| !! | TGAAATGGTTGTTTGAGTTT+TGG | - | chr1.4:71729826-71729845 | MS.gene21391:CDS | 30.0% |
| !! | TTTGACAAAAGATCTGGTTT+TGG | + | chr1.4:71731036-71731055 | None:intergenic | 30.0% |
| !!! | GAAACTTGGATGTTTTTTCT+TGG | - | chr1.4:71731291-71731310 | MS.gene21391:CDS | 30.0% |
| !!! | GTTAGACTTTTTTTCAAGTG+AGG | + | chr1.4:71730866-71730885 | None:intergenic | 30.0% |
| !!! | TTACAATTTTGAAGCCATGT+TGG | + | chr1.4:71730370-71730389 | None:intergenic | 30.0% |
| AAAAGACCAAGAGATGAGTT+GGG | - | chr1.4:71731459-71731478 | MS.gene21391:CDS | 35.0% | |
| AAGCTCCCAAATAGTTTCTA+GGG | + | chr1.4:71730012-71730031 | None:intergenic | 35.0% | |
| ACCTGTCAAAGTTCAAACTT+AGG | + | chr1.4:71730067-71730086 | None:intergenic | 35.0% | |
| AGATCAGGAATGAGAAAAAG+AGG | - | chr1.4:71731234-71731253 | MS.gene21391:CDS | 35.0% | |
| AGCACTTATTTGCAGAGATT+TGG | - | chr1.4:71731483-71731502 | MS.gene21391:CDS | 35.0% | |
| CTATATTCAGATCCAAAGAG+AGG | + | chr1.4:71731770-71731789 | None:intergenic | 35.0% | |
| CTCATAACTCTACTAACACT+TGG | + | chr1.4:71729339-71729358 | None:intergenic | 35.0% | |
| CTTGTTTGTCAAGAATGGAA+GGG | + | chr1.4:71730798-71730817 | None:intergenic | 35.0% | |
| GAATATTGAGGACCTAATAG+TGG | + | chr1.4:71729165-71729184 | None:intergenic | 35.0% | |
| GAGTAGTAGATTATGGCTTA+TGG | - | chr1.4:71729938-71729957 | MS.gene21391:CDS | 35.0% | |
| GATCAGGAATGAGAAAAAGA+GGG | - | chr1.4:71731235-71731254 | MS.gene21391:CDS | 35.0% | |
| GGAAGTTGAAAAGAAGTTTG+TGG | - | chr1.4:71729743-71729762 | MS.gene21391:CDS | 35.0% | |
| GTAATGTTCCTATGGAGTTA+AGG | - | chr1.4:71729667-71729686 | MS.gene21391:CDS | 35.0% | |
| GTAGTAGATTATGGCTTATG+GGG | - | chr1.4:71729940-71729959 | MS.gene21391:CDS | 35.0% | |
| GTTAACACAATCTATAGGCT+TGG | + | chr1.4:71729523-71729542 | None:intergenic | 35.0% | |
| TCAACACAAAGTCCACTATT+AGG | - | chr1.4:71729150-71729169 | MS.gene21391:CDS | 35.0% | |
| TCAAGTGAGGAAAATGAAGT+TGG | + | chr1.4:71730853-71730872 | None:intergenic | 35.0% | |
| TCCAACAAAGCCAACTAAAT+TGG | - | chr1.4:71730887-71730906 | MS.gene21391:CDS | 35.0% | |
| TCCTTCACTTTCTAATGCTT+TGG | - | chr1.4:71729191-71729210 | MS.gene21391:CDS | 35.0% | |
| TGAGATAGGTAATGTTCCTA+TGG | - | chr1.4:71729659-71729678 | MS.gene21391:CDS | 35.0% | |
| TGAGGAATCATCATTTCCTA+TGG | + | chr1.4:71731418-71731437 | None:intergenic | 35.0% | |
| TGTACATACCTTAACTCCAT+AGG | + | chr1.4:71729678-71729697 | None:intergenic | 35.0% | |
| TTAAGGATCTCTGCAAGAAA+TGG | - | chr1.4:71730743-71730762 | MS.gene21391:CDS | 35.0% | |
| TTCTGTTGAACATATGGTGA+TGG | - | chr1.4:71729884-71729903 | MS.gene21391:CDS | 35.0% | |
| ! | AACATGAAGAGGTGTAACTT+GGG | + | chr1.4:71729004-71729023 | None:intergenic | 35.0% |
| ! | AAGCCTTGTGAAAAGCTATA+TGG | - | chr1.4:71729773-71729792 | MS.gene21391:CDS | 35.0% |
| ! | ACCAAAGCATTAGAAAGTGA+AGG | + | chr1.4:71729195-71729214 | None:intergenic | 35.0% |
| ! | ACTTTGATGATCCTCTATCA+TGG | + | chr1.4:71731739-71731758 | None:intergenic | 35.0% |
| ! | AGCCTTGTGAAAAGCTATAT+GGG | - | chr1.4:71729774-71729793 | MS.gene21391:CDS | 35.0% |
| ! | CATCCTTTTACAATTCCTGT+TGG | - | chr1.4:71730032-71730051 | MS.gene21391:intron | 35.0% |
| ! | GATCATGATAATGCTGACAT+TGG | - | chr1.4:71731798-71731817 | MS.gene21391:CDS | 35.0% |
| ! | GATGATGATGATTGCTATGA+TGG | - | chr1.4:71730976-71730995 | MS.gene21391:CDS | 35.0% |
| ! | GGAAGTATAACAATTCCTGA+TGG | - | chr1.4:71731606-71731625 | MS.gene21391:CDS | 35.0% |
| ! | TCTTGTTTGTCAAGAATGGA+AGG | + | chr1.4:71730799-71730818 | None:intergenic | 35.0% |
| ! | TTCCCATATAGCTTTTCACA+AGG | + | chr1.4:71729779-71729798 | None:intergenic | 35.0% |
| ! | TTTGTGTTGATGCAGGTAAA+CGG | + | chr1.4:71729140-71729159 | None:intergenic | 35.0% |
| !! | ATCTCTTGGTCTTTTCCTTT+TGG | + | chr1.4:71731454-71731473 | None:intergenic | 35.0% |
| !! | GAAAATGAAGTTGGTGATGA+AGG | + | chr1.4:71730844-71730863 | None:intergenic | 35.0% |
| !! | TTATTTGCAGAGATTTGGTG+AGG | - | chr1.4:71731488-71731507 | MS.gene21391:CDS | 35.0% |
| !! | TTCCTTTGAGATATTCTCTC+TGG | + | chr1.4:71731331-71731350 | None:intergenic | 35.0% |
| !! | TTGACTTTTGGAGATAAAGC+AGG | - | chr1.4:71730238-71730257 | MS.gene21391:intron | 35.0% |
| !!! | ACTGTCCTTTTTTGTAGATC+AGG | - | chr1.4:71731219-71731238 | MS.gene21391:CDS | 35.0% |
| !!! | GGTTTTGGAACATTTCTATG+TGG | + | chr1.4:71731021-71731040 | None:intergenic | 35.0% |
| AAGTTACACAGTGGAAGATC+AGG | - | chr1.4:71730399-71730418 | MS.gene21391:CDS | 40.0% | |
| ACCCTTCCCTAGAAACTATT+TGG | - | chr1.4:71730003-71730022 | MS.gene21391:CDS | 40.0% | |
| AGCATTAGAAAGTGAAGGAG+TGG | + | chr1.4:71729190-71729209 | None:intergenic | 40.0% | |
| AGCCAGAGAGAATATCTCAA+AGG | - | chr1.4:71731326-71731345 | MS.gene21391:CDS | 40.0% | |
| AGGCTTAAGGCTAAGTTCTT+TGG | + | chr1.4:71729472-71729491 | None:intergenic | 40.0% | |
| AGTAGAGTTATGAGAGAAGC+TGG | - | chr1.4:71729345-71729364 | MS.gene21391:CDS | 40.0% | |
| AGTCGTAAGTTCGTAACTGT+TGG | + | chr1.4:71730597-71730616 | None:intergenic | 40.0% | |
| ATAGCACTAGCAACATGAAG+AGG | + | chr1.4:71729015-71729034 | None:intergenic | 40.0% | |
| ATGAGCACTTTCTCTTCCAT+AGG | - | chr1.4:71731399-71731418 | MS.gene21391:CDS | 40.0% | |
| CAAGAGCTTTGCATTGAAGA+GGG | + | chr1.4:71729092-71729111 | None:intergenic | 40.0% | |
| CATCATGCGCTGAAAACAAA+GGG | - | chr1.4:71731706-71731725 | MS.gene21391:CDS | 40.0% | |
| CCCTTCCCTAGAAACTATTT+GGG | - | chr1.4:71730004-71730023 | MS.gene21391:CDS | 40.0% | |
| CTGCCAACAGGAATTGTAAA+AGG | + | chr1.4:71730038-71730057 | None:intergenic | 40.0% | |
| GAAAAGACCAAGAGATGAGT+TGG | - | chr1.4:71731458-71731477 | MS.gene21391:CDS | 40.0% | |
| GAAGCTCCCAAATAGTTTCT+AGG | + | chr1.4:71730013-71730032 | None:intergenic | 40.0% | |
| GAAGGAGTGGTTGAATATTG+AGG | + | chr1.4:71729177-71729196 | None:intergenic | 40.0% | |
| GCCTAAGTTTGAACTTTGAC+AGG | - | chr1.4:71730063-71730082 | MS.gene21391:intron | 40.0% | |
| GGAAGAAAGAAGTTACACAG+TGG | - | chr1.4:71730390-71730409 | MS.gene21391:CDS | 40.0% | |
| GTGAAAAGCTATATGGGAAG+AGG | - | chr1.4:71729780-71729799 | MS.gene21391:CDS | 40.0% | |
| GTGAATCTAGCAACAAGAAG+AGG | - | chr1.4:71728973-71728992 | MS.gene21391:CDS | 40.0% | |
| GTGGTGAGAGTAGTAGATTA+TGG | - | chr1.4:71729931-71729950 | MS.gene21391:CDS | 40.0% | |
| TAAGGCTAAGTTCTTTGGAC+TGG | + | chr1.4:71729467-71729486 | None:intergenic | 40.0% | |
| TCAAGAGCTTTGCATTGAAG+AGG | + | chr1.4:71729093-71729112 | None:intergenic | 40.0% | |
| TCAAGCTAAGGAGAGAAGTA+TGG | - | chr1.4:71730201-71730220 | MS.gene21391:intron | 40.0% | |
| TCACTTGAAGAAGCTGAGTT+TGG | + | chr1.4:71731072-71731091 | None:intergenic | 40.0% | |
| TCATCATGCGCTGAAAACAA+AGG | - | chr1.4:71731705-71731724 | MS.gene21391:CDS | 40.0% | |
| TCCATGAAGAACACTCTATG+AGG | + | chr1.4:71731528-71731547 | None:intergenic | 40.0% | |
| TTTGGAGATAAAGCAGGAGT+TGG | - | chr1.4:71730244-71730263 | MS.gene21391:intron | 40.0% | |
| ! | CAACATGAAGAGGTGTAACT+TGG | + | chr1.4:71729005-71729024 | None:intergenic | 40.0% |
| ! | CCCAAATAGTTTCTAGGGAA+GGG | + | chr1.4:71730007-71730026 | None:intergenic | 40.0% |
| ! | GTGATGGAAAGGTTTGAGAT+AGG | - | chr1.4:71729645-71729664 | MS.gene21391:CDS | 40.0% |
| ! | TCCCAAATAGTTTCTAGGGA+AGG | + | chr1.4:71730008-71730027 | None:intergenic | 40.0% |
| ! | TCCTCATAGAGTGTTCTTCA+TGG | - | chr1.4:71731524-71731543 | MS.gene21391:CDS | 40.0% |
| ! | TTGTGGAAACTTGTTCTCCA+AGG | + | chr1.4:71731169-71731188 | None:intergenic | 40.0% |
| ! | TTTTCAGCGCATGATGATTG+TGG | + | chr1.4:71731702-71731721 | None:intergenic | 40.0% |
| !! | AGAGAGTGTTTCTAATGCTG+AGG | - | chr1.4:71729608-71729627 | MS.gene21391:CDS | 40.0% |
| !! | GAGAGTGTTTCTAATGCTGA+GGG | - | chr1.4:71729609-71729628 | MS.gene21391:CDS | 40.0% |
| !! | GCCAATTTAGTTGGCTTTGT+TGG | + | chr1.4:71730891-71730910 | None:intergenic | 40.0% |
| AAGCCTCAAGTTCTTAGCCT+TGG | - | chr1.4:71729486-71729505 | MS.gene21391:CDS | 45.0% | |
| AATGCTGAGGGAGTAGCTAA+GGG | - | chr1.4:71729621-71729640 | MS.gene21391:CDS | 45.0% | |
| AGAGGAACAGATTCACCATC+AGG | + | chr1.4:71731624-71731643 | None:intergenic | 45.0% | |
| AGCTTCTTCAAGTGAAGCAG+TGG | - | chr1.4:71731077-71731096 | MS.gene21391:CDS | 45.0% | |
| AGGGAAAGAGACCATGATAG+AGG | - | chr1.4:71731725-71731744 | MS.gene21391:CDS | 45.0% | |
| ATGACAATGGCATCCTTGAG+AGG | + | chr1.4:71731642-71731661 | None:intergenic | 45.0% | |
| CAAGATTCTCTGTGATGCCT+TGG | - | chr1.4:71731149-71731168 | MS.gene21391:CDS | 45.0% | |
| GCTATGCTTGCAACTTCAAC+AGG | - | chr1.4:71729030-71729049 | MS.gene21391:CDS | 45.0% | |
| GCTGAGTTTGGACTTGAGTT+AGG | + | chr1.4:71731060-71731079 | None:intergenic | 45.0% | |
| GGCTAAGAACTTGAGGCTTA+AGG | + | chr1.4:71729485-71729504 | None:intergenic | 45.0% | |
| TAATGCTGAGGGAGTAGCTA+AGG | - | chr1.4:71729620-71729639 | MS.gene21391:CDS | 45.0% | |
| TCTTCAAGTGAAGCAGTGGA+TGG | - | chr1.4:71731081-71731100 | MS.gene21391:CDS | 45.0% | |
| TGGTGAATCTGTTCCTCTCA+AGG | - | chr1.4:71731626-71731645 | MS.gene21391:CDS | 45.0% | |
| ! | AGTGGACTTTGTGTTGATGC+AGG | + | chr1.4:71729147-71729166 | None:intergenic | 45.0% |
| ! | GTCGACAGCGTAAAGCATTT+AGG | + | chr1.4:71730500-71730519 | None:intergenic | 45.0% |
| ! | TAGCTAAGGGAGTGATGGAA+AGG | - | chr1.4:71729634-71729653 | MS.gene21391:CDS | 45.0% |
| CCACCAAGGCTAAGAACTTG+AGG | + | chr1.4:71729492-71729511 | None:intergenic | 50.0% | |
| CTTAGGCTTAGACTGCCAAC+AGG | + | chr1.4:71730050-71730069 | None:intergenic | 50.0% | |
| GCAGTTCAAGCTTGCCAACA+TGG | - | chr1.4:71730353-71730372 | MS.gene21391:CDS | 50.0% | |
| GTGCTTCCCAACTCATCTCT+TGG | + | chr1.4:71731468-71731487 | None:intergenic | 50.0% | |
| TGCAGCTTTCAAACGTGCTC+AGG | - | chr1.4:71729215-71729234 | MS.gene21391:CDS | 50.0% | |
| !! | CCTCAAGTTCTTAGCCTTGG+TGG | - | chr1.4:71729489-71729508 | MS.gene21391:CDS | 50.0% |
| !! | GCTTGGTGTATGAACCACCA+AGG | + | chr1.4:71729506-71729525 | None:intergenic | 50.0% |
| GGGAGTAGCTAAGGGAGTGA+TGG | - | chr1.4:71729629-71729648 | MS.gene21391:CDS | 55.0% | |
| TCTCGATCGTTCCGCGTCGT+TGG | + | chr1.4:71729245-71729264 | None:intergenic | 60.0% | |
| GCTCAGGCTCACCAACGACG+CGG | - | chr1.4:71729231-71729250 | MS.gene21391:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 71728901 | 71731863 | 71728901 | ID=MS.gene21391 |
| chr1.4 | mRNA | 71728901 | 71731863 | 71728901 | ID=MS.gene21391.t1;Parent=MS.gene21391 |
| chr1.4 | exon | 71730680 | 71731863 | 71730680 | ID=MS.gene21391.t1.exon1;Parent=MS.gene21391.t1 |
| chr1.4 | CDS | 71730680 | 71731863 | 71730680 | ID=cds.MS.gene21391.t1;Parent=MS.gene21391.t1 |
| chr1.4 | exon | 71730344 | 71730569 | 71730344 | ID=MS.gene21391.t1.exon2;Parent=MS.gene21391.t1 |
| chr1.4 | CDS | 71730344 | 71730569 | 71730344 | ID=cds.MS.gene21391.t1;Parent=MS.gene21391.t1 |
| chr1.4 | exon | 71728901 | 71730034 | 71728901 | ID=MS.gene21391.t1.exon3;Parent=MS.gene21391.t1 |
| chr1.4 | CDS | 71728901 | 71730034 | 71728901 | ID=cds.MS.gene21391.t1;Parent=MS.gene21391.t1 |
| Gene Sequence |
| Protein sequence |
