Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052000.t1 | XP_013465454.1 | 96.9 | 445 | 13 | 1 | 1 | 445 | 9 | 452 | 1.00E-250 | 875.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052000.t1 | Q9SZF7 | 51.4 | 405 | 165 | 9 | 60 | 445 | 139 | 530 | 1.6e-111 | 404.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052000.t1 | A0A072VBU1 | 96.9 | 445 | 13 | 1 | 1 | 445 | 9 | 452 | 7.3e-251 | 875.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene052000.t1 | TF | GRAS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049350 | MS.gene052000 | 0.814926 | 1.20E-51 | -1.69E-46 |
| MS.gene049711 | MS.gene052000 | 0.809643 | 1.71E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene052000 | 0.819593 | 1.07E-52 | -1.69E-46 |
| MS.gene051720 | MS.gene052000 | 0.815213 | 1.04E-51 | -1.69E-46 |
| MS.gene052000 | MS.gene053144 | 0.813057 | 3.10E-51 | -1.69E-46 |
| MS.gene052000 | MS.gene053536 | 0.809849 | 1.54E-50 | -1.69E-46 |
| MS.gene052000 | MS.gene053538 | 0.807703 | 4.44E-50 | -1.69E-46 |
| MS.gene052000 | MS.gene054584 | 0.80454 | 2.06E-49 | -1.69E-46 |
| MS.gene052000 | MS.gene055465 | 0.809565 | 1.78E-50 | -1.69E-46 |
| MS.gene052000 | MS.gene055466 | 0.802289 | 6.02E-49 | -1.69E-46 |
| MS.gene052000 | MS.gene055537 | 0.823821 | 1.13E-53 | -1.69E-46 |
| MS.gene052000 | MS.gene05894 | 0.833135 | 6.34E-56 | -1.69E-46 |
| MS.gene052000 | MS.gene061335 | 0.821554 | 3.80E-53 | -1.69E-46 |
| MS.gene052000 | MS.gene06258 | 0.832966 | 6.99E-56 | -1.69E-46 |
| MS.gene052000 | MS.gene06469 | 0.804034 | 2.62E-49 | -1.69E-46 |
| MS.gene052000 | MS.gene06672 | 0.803279 | 3.76E-49 | -1.69E-46 |
| MS.gene052000 | MS.gene06890 | 0.813001 | 3.19E-51 | -1.69E-46 |
| MS.gene052000 | MS.gene074519 | 0.804772 | 1.84E-49 | -1.69E-46 |
| MS.gene052000 | MS.gene07723 | 0.8106 | 1.06E-50 | -1.69E-46 |
| MS.gene052000 | MS.gene21088 | 0.829498 | 4.98E-55 | -1.69E-46 |
| MS.gene052000 | MS.gene21127 | 0.8001 | 1.69E-48 | -1.69E-46 |
| MS.gene052000 | MS.gene21391 | 0.805089 | 1.58E-49 | -1.69E-46 |
| MS.gene052000 | MS.gene24736 | 0.807457 | 5.01E-50 | -1.69E-46 |
| MS.gene052000 | MS.gene26380 | 0.804794 | 1.82E-49 | -1.69E-46 |
| MS.gene052000 | MS.gene26465 | 0.801851 | 7.41E-49 | -1.69E-46 |
| MS.gene052000 | MS.gene26659 | 0.802744 | 4.85E-49 | -1.69E-46 |
| MS.gene052000 | MS.gene26851 | 0.806655 | 7.40E-50 | -1.69E-46 |
| MS.gene052000 | MS.gene29807 | 0.807678 | 4.50E-50 | -1.69E-46 |
| MS.gene052000 | MS.gene30350 | 0.813208 | 2.88E-51 | -1.69E-46 |
| MS.gene052000 | MS.gene34286 | 0.808496 | 3.01E-50 | -1.69E-46 |
| MS.gene052000 | MS.gene35575 | 0.81034 | 1.21E-50 | -1.69E-46 |
| MS.gene052000 | MS.gene36132 | 0.810731 | 9.96E-51 | -1.69E-46 |
| MS.gene052000 | MS.gene36334 | 0.809089 | 2.25E-50 | -1.69E-46 |
| MS.gene052000 | MS.gene38303 | 0.81099 | 8.76E-51 | -1.69E-46 |
| MS.gene052000 | MS.gene41651 | 0.828952 | 6.75E-55 | -1.69E-46 |
| MS.gene052000 | MS.gene45425 | 0.801179 | 1.02E-48 | -1.69E-46 |
| MS.gene052000 | MS.gene45609 | 0.805995 | 1.02E-49 | -1.69E-46 |
| MS.gene052000 | MS.gene47586 | 0.801932 | 7.13E-49 | -1.69E-46 |
| MS.gene052000 | MS.gene48519 | 0.826708 | 2.34E-54 | -1.69E-46 |
| MS.gene052000 | MS.gene49313 | 0.807818 | 4.20E-50 | -1.69E-46 |
| MS.gene052000 | MS.gene51710 | 0.810352 | 1.20E-50 | -1.69E-46 |
| MS.gene052000 | MS.gene53321 | 0.803218 | 3.87E-49 | -1.69E-46 |
| MS.gene052000 | MS.gene55101 | 0.815763 | 7.83E-52 | -1.69E-46 |
| MS.gene052000 | MS.gene56169 | 0.822753 | 2.00E-53 | -1.69E-46 |
| MS.gene052000 | MS.gene57130 | 0.800223 | 1.59E-48 | -1.69E-46 |
| MS.gene052000 | MS.gene60174 | 0.832821 | 7.60E-56 | -1.69E-46 |
| MS.gene052000 | MS.gene61720 | 0.801351 | 9.38E-49 | -1.69E-46 |
| MS.gene052000 | MS.gene65172 | 0.801391 | 9.20E-49 | -1.69E-46 |
| MS.gene052000 | MS.gene69459 | 0.804079 | 2.57E-49 | -1.69E-46 |
| MS.gene052000 | MS.gene71151 | 0.813678 | 2.27E-51 | -1.69E-46 |
| MS.gene052000 | MS.gene73577 | 0.816759 | 4.69E-52 | -1.69E-46 |
| MS.gene052000 | MS.gene76518 | 0.820719 | 5.91E-53 | -1.69E-46 |
| MS.gene052000 | MS.gene78652 | 0.809059 | 2.28E-50 | -1.69E-46 |
| MS.gene052000 | MS.gene80724 | 0.807579 | 4.72E-50 | -1.69E-46 |
| MS.gene052000 | MS.gene81678 | 0.813895 | 2.03E-51 | -1.69E-46 |
| MS.gene052000 | MS.gene84426 | 0.815392 | 9.46E-52 | -1.69E-46 |
| MS.gene052000 | MS.gene85133 | 0.818546 | 1.85E-52 | -1.69E-46 |
| MS.gene052000 | MS.gene85266 | 0.957679 | 1.51E-115 | -1.69E-46 |
| MS.gene052000 | MS.gene85553 | 0.819439 | 1.16E-52 | -1.69E-46 |
| MS.gene052000 | MS.gene90610 | 0.800085 | 1.70E-48 | -1.69E-46 |
| MS.gene052000 | MS.gene90646 | 0.808566 | 2.91E-50 | -1.69E-46 |
| MS.gene052000 | MS.gene90649 | 0.804791 | 1.82E-49 | -1.69E-46 |
| MS.gene052000 | MS.gene95401 | 0.805088 | 1.58E-49 | -1.69E-46 |
| MS.gene052000 | MS.gene98735 | 0.926789 | 2.89E-91 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052000.t1 | MTR_2g099110 | 96.854 | 445 | 13 | 1 | 1 | 445 | 9 | 452 | 0.0 | 900 |
| MS.gene052000.t1 | MTR_5g015490 | 54.774 | 398 | 153 | 7 | 61 | 445 | 108 | 491 | 9.18e-149 | 432 |
| MS.gene052000.t1 | MTR_4g097080 | 55.499 | 391 | 151 | 8 | 63 | 445 | 129 | 504 | 4.56e-147 | 429 |
| MS.gene052000.t1 | MTR_2g089100 | 28.266 | 421 | 246 | 9 | 60 | 445 | 45 | 444 | 2.89e-51 | 179 |
| MS.gene052000.t1 | MTR_1g029420 | 29.306 | 389 | 245 | 8 | 66 | 444 | 224 | 592 | 5.81e-51 | 181 |
| MS.gene052000.t1 | MTR_4g095500 | 28.690 | 481 | 279 | 12 | 13 | 445 | 5 | 469 | 1.51e-47 | 170 |
| MS.gene052000.t1 | MTR_2g082090 | 28.118 | 441 | 275 | 10 | 20 | 443 | 163 | 578 | 5.15e-47 | 171 |
| MS.gene052000.t1 | MTR_3g089055 | 28.021 | 389 | 250 | 8 | 66 | 444 | 202 | 570 | 6.95e-46 | 167 |
| MS.gene052000.t1 | MTR_3g089055 | 28.021 | 389 | 250 | 8 | 66 | 444 | 197 | 565 | 9.41e-46 | 167 |
| MS.gene052000.t1 | MTR_5g094450 | 28.608 | 395 | 244 | 10 | 66 | 444 | 160 | 532 | 1.35e-42 | 157 |
| MS.gene052000.t1 | MTR_5g097480 | 28.462 | 390 | 245 | 9 | 67 | 444 | 177 | 544 | 2.44e-42 | 157 |
| MS.gene052000.t1 | MTR_5g015950 | 27.021 | 433 | 244 | 11 | 66 | 445 | 34 | 447 | 8.27e-42 | 154 |
| MS.gene052000.t1 | MTR_3g053270 | 27.021 | 433 | 244 | 11 | 66 | 445 | 34 | 447 | 8.27e-42 | 154 |
| MS.gene052000.t1 | MTR_3g056110 | 26.478 | 389 | 256 | 8 | 66 | 444 | 174 | 542 | 2.44e-39 | 149 |
| MS.gene052000.t1 | MTR_4g133660 | 28.316 | 392 | 244 | 11 | 66 | 443 | 174 | 542 | 1.42e-38 | 147 |
| MS.gene052000.t1 | MTR_8g020840 | 27.317 | 410 | 250 | 13 | 59 | 444 | 163 | 548 | 4.51e-38 | 145 |
| MS.gene052000.t1 | MTR_8g442410 | 28.462 | 390 | 246 | 10 | 68 | 444 | 156 | 525 | 2.34e-37 | 143 |
| MS.gene052000.t1 | MTR_7g074650 | 28.125 | 384 | 237 | 12 | 70 | 445 | 441 | 793 | 4.81e-37 | 144 |
| MS.gene052000.t1 | MTR_7g027190 | 25.570 | 395 | 256 | 9 | 67 | 444 | 300 | 673 | 4.28e-34 | 135 |
| MS.gene052000.t1 | MTR_2g026250 | 26.606 | 436 | 278 | 13 | 31 | 444 | 181 | 596 | 4.75e-34 | 134 |
| MS.gene052000.t1 | MTR_3g065980 | 27.342 | 395 | 242 | 9 | 68 | 444 | 173 | 540 | 1.56e-33 | 132 |
| MS.gene052000.t1 | MTR_4g077760 | 28.753 | 393 | 237 | 11 | 66 | 444 | 192 | 555 | 5.05e-33 | 131 |
| MS.gene052000.t1 | MTR_4g102790 | 24.422 | 389 | 267 | 8 | 67 | 445 | 292 | 663 | 7.13e-33 | 132 |
| MS.gene052000.t1 | MTR_2g097310 | 27.481 | 393 | 246 | 11 | 67 | 445 | 272 | 639 | 4.51e-32 | 129 |
| MS.gene052000.t1 | MTR_4g064200 | 27.179 | 390 | 251 | 11 | 67 | 445 | 284 | 651 | 1.05e-31 | 128 |
| MS.gene052000.t1 | MTR_2g097350 | 28.827 | 392 | 242 | 13 | 67 | 445 | 274 | 641 | 2.61e-31 | 127 |
| MS.gene052000.t1 | MTR_3g072710 | 27.062 | 388 | 240 | 13 | 77 | 443 | 134 | 499 | 4.90e-31 | 125 |
| MS.gene052000.t1 | MTR_7g062120 | 26.118 | 425 | 277 | 11 | 36 | 445 | 339 | 741 | 1.46e-30 | 125 |
| MS.gene052000.t1 | MTR_4g076020 | 26.546 | 388 | 229 | 17 | 70 | 445 | 87 | 430 | 3.56e-29 | 119 |
| MS.gene052000.t1 | MTR_1g069725 | 26.027 | 438 | 277 | 16 | 14 | 443 | 64 | 462 | 5.27e-29 | 119 |
| MS.gene052000.t1 | MTR_4g104020 | 25.616 | 406 | 254 | 12 | 60 | 444 | 142 | 520 | 2.52e-28 | 117 |
| MS.gene052000.t1 | MTR_4g064160 | 24.679 | 389 | 264 | 8 | 67 | 445 | 316 | 685 | 8.89e-28 | 116 |
| MS.gene052000.t1 | MTR_2g097463 | 27.247 | 356 | 225 | 10 | 67 | 409 | 290 | 624 | 1.17e-27 | 116 |
| MS.gene052000.t1 | MTR_2g097467 | 25.281 | 356 | 232 | 8 | 67 | 409 | 289 | 623 | 1.67e-27 | 115 |
| MS.gene052000.t1 | MTR_4g064120 | 26.243 | 362 | 236 | 11 | 42 | 388 | 226 | 571 | 1.93e-27 | 115 |
| MS.gene052000.t1 | MTR_5g058860 | 28.842 | 423 | 252 | 18 | 46 | 443 | 98 | 496 | 2.84e-27 | 114 |
| MS.gene052000.t1 | MTR_2g097410 | 25.062 | 403 | 267 | 10 | 57 | 445 | 361 | 742 | 2.91e-27 | 115 |
| MS.gene052000.t1 | MTR_4g064150 | 25.320 | 391 | 263 | 12 | 67 | 445 | 361 | 734 | 1.01e-26 | 113 |
| MS.gene052000.t1 | MTR_2g097390 | 26.410 | 390 | 254 | 10 | 67 | 445 | 275 | 642 | 1.35e-26 | 113 |
| MS.gene052000.t1 | MTR_4g064180 | 25.824 | 364 | 235 | 12 | 42 | 388 | 226 | 571 | 6.56e-26 | 110 |
| MS.gene052000.t1 | MTR_2g097473 | 24.700 | 417 | 271 | 12 | 2 | 408 | 239 | 622 | 9.31e-26 | 110 |
| MS.gene052000.t1 | MTR_2g034250 | 24.557 | 395 | 260 | 12 | 68 | 444 | 211 | 585 | 3.54e-23 | 102 |
| MS.gene052000.t1 | MTR_2g034260 | 23.291 | 395 | 264 | 13 | 68 | 444 | 211 | 584 | 6.65e-23 | 102 |
| MS.gene052000.t1 | MTR_1g096030 | 25.666 | 413 | 267 | 14 | 53 | 444 | 66 | 459 | 8.06e-23 | 100 |
| MS.gene052000.t1 | MTR_2g034280 | 26.298 | 289 | 196 | 8 | 68 | 344 | 204 | 487 | 1.05e-21 | 98.2 |
| MS.gene052000.t1 | MTR_4g076140 | 30.172 | 232 | 150 | 5 | 56 | 285 | 37 | 258 | 1.12e-21 | 97.4 |
| MS.gene052000.t1 | MTR_5g009080 | 26.522 | 230 | 159 | 4 | 56 | 284 | 45 | 265 | 4.53e-21 | 95.9 |
| MS.gene052000.t1 | MTR_3g022830 | 22.371 | 447 | 265 | 10 | 56 | 444 | 14 | 436 | 1.53e-20 | 94.0 |
| MS.gene052000.t1 | MTR_2g097380 | 26.250 | 320 | 197 | 9 | 74 | 385 | 231 | 519 | 7.90e-20 | 92.4 |
| MS.gene052000.t1 | MTR_7g057230 | 27.759 | 299 | 181 | 10 | 159 | 443 | 379 | 656 | 1.11e-17 | 85.9 |
| MS.gene052000.t1 | MTR_0092s0100 | 23.316 | 386 | 257 | 9 | 68 | 444 | 376 | 731 | 1.33e-17 | 85.9 |
| MS.gene052000.t1 | MTR_0092s0100 | 23.316 | 386 | 257 | 9 | 68 | 444 | 373 | 728 | 1.43e-17 | 85.9 |
| MS.gene052000.t1 | MTR_6g047750 | 24.378 | 402 | 252 | 13 | 64 | 444 | 292 | 662 | 1.54e-16 | 82.4 |
| MS.gene052000.t1 | MTR_8g093070 | 25.634 | 355 | 218 | 15 | 103 | 445 | 177 | 497 | 9.83e-16 | 79.7 |
| MS.gene052000.t1 | MTR_1g086970 | 21.644 | 365 | 260 | 10 | 89 | 444 | 131 | 478 | 5.78e-15 | 77.0 |
| MS.gene052000.t1 | MTR_4g026485 | 21.644 | 365 | 252 | 10 | 86 | 444 | 288 | 624 | 5.83e-15 | 77.4 |
| MS.gene052000.t1 | MTR_8g077940 | 23.828 | 256 | 176 | 8 | 86 | 332 | 201 | 446 | 6.50e-12 | 67.8 |
| MS.gene052000.t1 | MTR_7g109580 | 22.715 | 361 | 247 | 11 | 94 | 444 | 216 | 554 | 8.49e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052000.t1 | AT4G37650 | 51.358 | 405 | 165 | 9 | 60 | 445 | 139 | 530 | 5.60e-142 | 417 |
| MS.gene052000.t1 | AT3G49950 | 30.976 | 410 | 236 | 12 | 60 | 445 | 23 | 409 | 9.57e-57 | 193 |
| MS.gene052000.t1 | AT5G48150 | 28.747 | 407 | 248 | 10 | 52 | 444 | 112 | 490 | 2.76e-47 | 170 |
| MS.gene052000.t1 | AT5G48150 | 28.747 | 407 | 248 | 10 | 52 | 444 | 112 | 490 | 2.76e-47 | 170 |
| MS.gene052000.t1 | AT5G48150 | 28.747 | 407 | 248 | 10 | 52 | 444 | 112 | 490 | 2.76e-47 | 170 |
| MS.gene052000.t1 | AT5G48150 | 28.747 | 407 | 248 | 10 | 52 | 444 | 112 | 490 | 2.76e-47 | 170 |
| MS.gene052000.t1 | AT2G04890 | 28.756 | 386 | 242 | 9 | 67 | 444 | 53 | 413 | 3.54e-47 | 167 |
| MS.gene052000.t1 | AT1G50600 | 29.383 | 405 | 251 | 10 | 50 | 444 | 147 | 526 | 4.83e-45 | 164 |
| MS.gene052000.t1 | AT1G50600 | 29.383 | 405 | 251 | 10 | 50 | 444 | 218 | 597 | 1.11e-44 | 164 |
| MS.gene052000.t1 | AT1G50600 | 29.383 | 405 | 251 | 10 | 50 | 444 | 222 | 601 | 1.22e-44 | 164 |
| MS.gene052000.t1 | AT1G21450 | 27.725 | 422 | 268 | 11 | 37 | 444 | 195 | 593 | 6.98e-43 | 159 |
| MS.gene052000.t1 | AT3G13840 | 29.009 | 424 | 250 | 11 | 39 | 444 | 120 | 510 | 1.14e-41 | 155 |
| MS.gene052000.t1 | AT3G54220 | 29.777 | 403 | 239 | 15 | 55 | 445 | 281 | 651 | 8.11e-39 | 149 |
| MS.gene052000.t1 | AT3G03450 | 27.487 | 382 | 252 | 9 | 68 | 444 | 184 | 545 | 3.58e-38 | 145 |
| MS.gene052000.t1 | AT4G17230 | 27.806 | 392 | 249 | 10 | 66 | 445 | 157 | 526 | 2.35e-37 | 143 |
| MS.gene052000.t1 | AT4G17230 | 27.806 | 392 | 249 | 10 | 66 | 445 | 157 | 526 | 2.35e-37 | 143 |
| MS.gene052000.t1 | AT5G17490 | 27.822 | 381 | 246 | 9 | 68 | 444 | 161 | 516 | 5.28e-37 | 142 |
| MS.gene052000.t1 | AT1G14920 | 27.506 | 389 | 238 | 10 | 68 | 444 | 173 | 529 | 7.22e-35 | 136 |
| MS.gene052000.t1 | AT3G46600 | 28.974 | 390 | 245 | 10 | 67 | 445 | 4 | 372 | 9.19e-35 | 133 |
| MS.gene052000.t1 | AT1G66350 | 27.487 | 382 | 241 | 11 | 68 | 444 | 156 | 506 | 2.02e-34 | 135 |
| MS.gene052000.t1 | AT3G46600 | 27.804 | 428 | 269 | 11 | 29 | 445 | 182 | 580 | 5.05e-34 | 134 |
| MS.gene052000.t1 | AT3G46600 | 27.804 | 428 | 269 | 11 | 29 | 445 | 150 | 548 | 6.11e-34 | 134 |
| MS.gene052000.t1 | AT2G01570 | 26.753 | 385 | 246 | 9 | 68 | 444 | 225 | 581 | 3.31e-33 | 132 |
| MS.gene052000.t1 | AT5G59450 | 28.061 | 392 | 250 | 10 | 67 | 445 | 227 | 599 | 9.36e-33 | 131 |
| MS.gene052000.t1 | AT5G41920 | 27.751 | 418 | 254 | 16 | 46 | 444 | 12 | 400 | 4.20e-30 | 121 |
| MS.gene052000.t1 | AT1G07530 | 25.238 | 420 | 272 | 12 | 38 | 445 | 377 | 766 | 1.91e-29 | 122 |
| MS.gene052000.t1 | AT5G66770 | 27.033 | 418 | 263 | 13 | 43 | 444 | 193 | 584 | 8.84e-29 | 119 |
| MS.gene052000.t1 | AT2G29065 | 25.127 | 394 | 264 | 10 | 67 | 445 | 252 | 629 | 1.84e-28 | 118 |
| MS.gene052000.t1 | AT1G63100 | 24.682 | 393 | 264 | 9 | 67 | 443 | 277 | 653 | 1.95e-28 | 119 |
| MS.gene052000.t1 | AT1G63100 | 24.682 | 393 | 264 | 9 | 67 | 443 | 252 | 628 | 2.02e-28 | 118 |
| MS.gene052000.t1 | AT2G29060 | 26.343 | 391 | 258 | 9 | 67 | 445 | 321 | 693 | 5.09e-28 | 117 |
| MS.gene052000.t1 | AT2G29060 | 26.343 | 391 | 258 | 9 | 67 | 445 | 284 | 656 | 5.39e-28 | 117 |
| MS.gene052000.t1 | AT4G08250 | 27.907 | 387 | 232 | 14 | 76 | 443 | 118 | 476 | 8.72e-28 | 115 |
| MS.gene052000.t1 | AT1G55580 | 27.301 | 326 | 208 | 9 | 133 | 444 | 135 | 445 | 7.29e-27 | 112 |
| MS.gene052000.t1 | AT1G07520 | 26.276 | 392 | 261 | 10 | 67 | 445 | 318 | 694 | 1.04e-26 | 113 |
| MS.gene052000.t1 | AT1G07520 | 26.276 | 392 | 261 | 10 | 67 | 445 | 319 | 695 | 1.06e-26 | 113 |
| MS.gene052000.t1 | AT1G07520 | 26.276 | 392 | 261 | 10 | 67 | 445 | 154 | 530 | 1.19e-26 | 112 |
| MS.gene052000.t1 | AT1G07520 | 26.276 | 392 | 261 | 10 | 67 | 445 | 154 | 530 | 1.19e-26 | 112 |
| MS.gene052000.t1 | AT2G37650 | 25.831 | 391 | 255 | 12 | 67 | 445 | 335 | 702 | 1.31e-26 | 113 |
| MS.gene052000.t1 | AT2G37650 | 25.831 | 391 | 255 | 12 | 67 | 445 | 347 | 714 | 1.89e-26 | 112 |
| MS.gene052000.t1 | AT3G50650 | 27.222 | 360 | 226 | 12 | 98 | 444 | 206 | 542 | 1.40e-24 | 106 |
| MS.gene052000.t1 | AT1G50420 | 29.439 | 214 | 145 | 2 | 58 | 271 | 48 | 255 | 3.64e-23 | 102 |
| MS.gene052000.t1 | AT5G52510 | 23.515 | 404 | 258 | 10 | 64 | 444 | 265 | 640 | 2.43e-20 | 94.4 |
| MS.gene052000.t1 | AT4G00150 | 26.766 | 269 | 163 | 9 | 72 | 330 | 212 | 456 | 1.07e-12 | 70.5 |
| MS.gene052000.t1 | AT3G60630 | 24.920 | 313 | 197 | 12 | 147 | 444 | 333 | 622 | 4.61e-12 | 68.6 |
Find 64 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGAGATGATCATATTTC+AGG | 0.247824 | 2.2:+3744588 | MS.gene052000:CDS |
| AGTGTTCAAGAAGCATAATT+AGG | 0.262613 | 2.2:+3744367 | MS.gene052000:CDS |
| AAGAAGCATAATTAGGGTTT+TGG | 0.264830 | 2.2:+3744374 | MS.gene052000:CDS |
| TGCACACTCTTTGAGAAGTT+TGG | 0.280317 | 2.2:-3743524 | None:intergenic |
| AACGAGTTATCTTCACCTTA+TGG | 0.280967 | 2.2:+3743601 | MS.gene052000:CDS |
| GGAGAAATTTGCTAGGCTTA+TGG | 0.293692 | 2.2:+3744014 | MS.gene052000:CDS |
| GAGAAATTTGCTAGGCTTAT+GGG | 0.296804 | 2.2:+3744015 | MS.gene052000:CDS |
| GTAAGTCCATGGACAACTTT+TGG | 0.310503 | 2.2:+3743778 | MS.gene052000:CDS |
| GAAGGAGGAGCCAGTTGTTT+GGG | 0.360276 | 2.2:+3744626 | MS.gene052000:CDS |
| GGAAGGAGGAGCCAGTTGTT+TGG | 0.371169 | 2.2:+3744625 | MS.gene052000:CDS |
| GCCTACTCTTCTAGAAGCTT+TGG | 0.372153 | 2.2:+3743894 | MS.gene052000:CDS |
| ATTAACCTCTCATTACTTGT+TGG | 0.376305 | 2.2:-3744333 | None:intergenic |
| CATGTTGATGCCCAAACAAC+TGG | 0.384320 | 2.2:-3744636 | None:intergenic |
| GTGTTCAAGAAGCATAATTA+GGG | 0.390341 | 2.2:+3744368 | MS.gene052000:CDS |
| TGACAACAATTGTGAGCTTA+AGG | 0.423250 | 2.2:-3743942 | None:intergenic |
| GTATTCTTTGAAGTATTGTA+AGG | 0.423643 | 2.2:-3743343 | None:intergenic |
| TTCTAGTGTTGTTGTTATGA+AGG | 0.438949 | 2.2:+3743975 | MS.gene052000:CDS |
| CTAATAACGTTCAACTCAAA+AGG | 0.439883 | 2.2:-3744042 | None:intergenic |
| TGATGTATGCATCATGTCTA+TGG | 0.450632 | 2.2:-3743425 | None:intergenic |
| GCAATAGCTTTGAATTGTGT+TGG | 0.455338 | 2.2:+3744123 | MS.gene052000:CDS |
| ACGTCAAAGCGTTGCTAAAG+AGG | 0.462927 | 2.2:+3744535 | MS.gene052000:CDS |
| GCAACACACTTTGTACTCAA+TGG | 0.478846 | 2.2:+3743872 | MS.gene052000:CDS |
| GTCGTGATCAAGATGGTAAA+TGG | 0.481733 | 2.2:+3743497 | MS.gene052000:CDS |
| GTTGTTGTTATGAAGGAAGT+TGG | 0.482632 | 2.2:+3743982 | MS.gene052000:CDS |
| AACAATGGTTTGAAAGGCTT+AGG | 0.484650 | 2.2:+3744469 | MS.gene052000:CDS |
| TTTGGACACGTAGCATCAAA+TGG | 0.490444 | 2.2:+3743796 | MS.gene052000:CDS |
| ACACTCTTTGAGAAGTTTGG+AGG | 0.491229 | 2.2:-3743521 | None:intergenic |
| GAAGGAAGTTGGTCAAAGAA+TGG | 0.494144 | 2.2:+3743993 | MS.gene052000:CDS |
| TCAACAAATGTCACAACTCT+AGG | 0.495147 | 2.2:-3744210 | None:intergenic |
| GAGGAAAACAATGGTTTGAA+AGG | 0.495452 | 2.2:+3744463 | MS.gene052000:CDS |
| ATGAGAGGTTAATGTTGGAA+AGG | 0.501619 | 2.2:+3744343 | MS.gene052000:CDS |
| GTGACATTTGTTGAGGAAGA+AGG | 0.504902 | 2.2:+3744219 | MS.gene052000:CDS |
| TGGATTTAGTGATGATGTTG+TGG | 0.508345 | 2.2:+3744509 | MS.gene052000:CDS |
| GTGACCAGATTGTGTTGCCT+TGG | 0.516301 | 2.2:-3743671 | None:intergenic |
| TATTGTGATAAAAGAGAGAG+AGG | 0.525178 | 2.2:+3744444 | MS.gene052000:CDS |
| TGAGAGGTTAATGTTGGAAA+GGG | 0.526258 | 2.2:+3744344 | MS.gene052000:CDS |
| GAATTAACGAAAGAGAGATT+AGG | 0.532150 | 2.2:+3744084 | MS.gene052000:CDS |
| TGGTCACTTGTTGTGCCTCA+AGG | 0.536151 | 2.2:+3744570 | MS.gene052000:CDS |
| CGTTTAACATCCAAAGAAGA+TGG | 0.546279 | 2.2:-3743582 | None:intergenic |
| GAGAGATTAGGAATTCAAGA+AGG | 0.556850 | 2.2:+3744096 | MS.gene052000:CDS |
| AAGTAATGAGAGGTTAATGT+TGG | 0.563161 | 2.2:+3744338 | MS.gene052000:CDS |
| GTTAATACTCAAGTTTCAAG+AGG | 0.563644 | 2.2:+3743756 | MS.gene052000:CDS |
| AAAGAATGGAGAAATTTGCT+AGG | 0.565724 | 2.2:+3744007 | MS.gene052000:CDS |
| CAGTTGTTTGGGCATCAACA+TGG | 0.572778 | 2.2:+3744637 | MS.gene052000:CDS |
| TAGAGTTGTGACATTTGTTG+AGG | 0.579320 | 2.2:+3744212 | MS.gene052000:CDS |
| ACGTGTCCAAAAGTTGTCCA+TGG | 0.583351 | 2.2:-3743784 | None:intergenic |
| TTCTTGCTGAATCAAAAGAG+TGG | 0.585703 | 2.2:-3743732 | None:intergenic |
| TTCAACCAACAAGTAATGAG+AGG | 0.588837 | 2.2:+3744328 | MS.gene052000:CDS |
| TTTGATGATGATGAAGATGA+TGG | 0.595058 | 2.2:+3744411 | MS.gene052000:CDS |
| AAAGAGAGAGAGGAAAACAA+TGG | 0.597298 | 2.2:+3744454 | MS.gene052000:CDS |
| TTTCAGGAATGTACCTCACA+TGG | 0.601917 | 2.2:+3744604 | MS.gene052000:CDS |
| TTAACATCCAAAGAAGATGG+TGG | 0.611767 | 2.2:-3743579 | None:intergenic |
| AGTTTCAAGAGGTAAGTCCA+TGG | 0.613365 | 2.2:+3743767 | MS.gene052000:CDS |
| GCCAAAGCTTCTAGAAGAGT+AGG | 0.613903 | 2.2:-3743895 | None:intergenic |
| TAAAGAGGTATCAAGCTGGT+TGG | 0.616512 | 2.2:+3744550 | MS.gene052000:CDS |
| AGGAATGTACCTCACATGGA+AGG | 0.622436 | 2.2:+3744608 | MS.gene052000:CDS |
| TGTCATCGTCGTGATCAAGA+TGG | 0.626860 | 2.2:+3743490 | MS.gene052000:CDS |
| CTGGCTCCTCCTTCCATGTG+AGG | 0.635263 | 2.2:-3744617 | None:intergenic |
| TTGCTAAAGAGGTATCAAGC+TGG | 0.647082 | 2.2:+3744546 | MS.gene052000:CDS |
| AATGTACCTCACATGGAAGG+AGG | 0.650550 | 2.2:+3744611 | MS.gene052000:CDS |
| GAAATATGATCATCTCCTTG+AGG | 0.654963 | 2.2:-3744585 | None:intergenic |
| GATGATGATGAAGATGATGG+TGG | 0.703886 | 2.2:+3744414 | MS.gene052000:CDS |
| ACAATTGTGAGCTTAAGGTG+AGG | 0.710121 | 2.2:-3743937 | None:intergenic |
| ACATCATCACTAAATCCACA+AGG | 0.718156 | 2.2:-3744504 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTATTTTGAGATGTTAG+AGG | + | chr2.2:3744299-3744318 | MS.gene052000:CDS | 20.0% |
| !!! | GAAAATAGCTATTATTTTGA+TGG | - | chr2.2:3743390-3743409 | None:intergenic | 20.0% |
| !! | TTTTGATCAATATCTCCATA+AGG | - | chr2.2:3743619-3743638 | None:intergenic | 25.0% |
| !!! | GTATTCTTTGAAGTATTGTA+AGG | - | chr2.2:3743346-3743365 | None:intergenic | 25.0% |
| AAGTAATGAGAGGTTAATGT+TGG | + | chr2.2:3744338-3744357 | MS.gene052000:CDS | 30.0% | |
| ATTAACCTCTCATTACTTGT+TGG | - | chr2.2:3744336-3744355 | None:intergenic | 30.0% | |
| CTAATAACGTTCAACTCAAA+AGG | - | chr2.2:3744045-3744064 | None:intergenic | 30.0% | |
| GAATTAACGAAAGAGAGATT+AGG | + | chr2.2:3744084-3744103 | MS.gene052000:CDS | 30.0% | |
| GTTAATACTCAAGTTTCAAG+AGG | + | chr2.2:3743756-3743775 | MS.gene052000:CDS | 30.0% | |
| TATTGTGATAAAAGAGAGAG+AGG | + | chr2.2:3744444-3744463 | MS.gene052000:CDS | 30.0% | |
| ! | AAAGAATGGAGAAATTTGCT+AGG | + | chr2.2:3744007-3744026 | MS.gene052000:CDS | 30.0% |
| ! | AGTGTTCAAGAAGCATAATT+AGG | + | chr2.2:3744367-3744386 | MS.gene052000:CDS | 30.0% |
| ! | GTGTTCAAGAAGCATAATTA+GGG | + | chr2.2:3744368-3744387 | MS.gene052000:CDS | 30.0% |
| ! | TTCTAGTGTTGTTGTTATGA+AGG | + | chr2.2:3743975-3743994 | MS.gene052000:CDS | 30.0% |
| !! | AAGAAGCATAATTAGGGTTT+TGG | + | chr2.2:3744374-3744393 | MS.gene052000:CDS | 30.0% |
| !! | TTTGATGATGATGAAGATGA+TGG | + | chr2.2:3744411-3744430 | MS.gene052000:CDS | 30.0% |
| AAAGAGAGAGAGGAAAACAA+TGG | + | chr2.2:3744454-3744473 | MS.gene052000:CDS | 35.0% | |
| AACAATGGTTTGAAAGGCTT+AGG | + | chr2.2:3744469-3744488 | MS.gene052000:CDS | 35.0% | |
| AACGAGTTATCTTCACCTTA+TGG | + | chr2.2:3743601-3743620 | MS.gene052000:CDS | 35.0% | |
| ACATCATCACTAAATCCACA+AGG | - | chr2.2:3744507-3744526 | None:intergenic | 35.0% | |
| ATGAGAGGTTAATGTTGGAA+AGG | + | chr2.2:3744343-3744362 | MS.gene052000:CDS | 35.0% | |
| CAAAAATCCACCATCTTCTT+TGG | + | chr2.2:3743572-3743591 | MS.gene052000:CDS | 35.0% | |
| CAAGGAGATGATCATATTTC+AGG | + | chr2.2:3744588-3744607 | MS.gene052000:CDS | 35.0% | |
| CGTTTAACATCCAAAGAAGA+TGG | - | chr2.2:3743585-3743604 | None:intergenic | 35.0% | |
| GAAATATGATCATCTCCTTG+AGG | - | chr2.2:3744588-3744607 | None:intergenic | 35.0% | |
| GAGAGATTAGGAATTCAAGA+AGG | + | chr2.2:3744096-3744115 | MS.gene052000:CDS | 35.0% | |
| GAGGAAAACAATGGTTTGAA+AGG | + | chr2.2:3744463-3744482 | MS.gene052000:CDS | 35.0% | |
| TCAACAAATGTCACAACTCT+AGG | - | chr2.2:3744213-3744232 | None:intergenic | 35.0% | |
| TGACAACAATTGTGAGCTTA+AGG | - | chr2.2:3743945-3743964 | None:intergenic | 35.0% | |
| TGAGAGGTTAATGTTGGAAA+GGG | + | chr2.2:3744344-3744363 | MS.gene052000:CDS | 35.0% | |
| TGATGTATGCATCATGTCTA+TGG | - | chr2.2:3743428-3743447 | None:intergenic | 35.0% | |
| TTAACATCCAAAGAAGATGG+TGG | - | chr2.2:3743582-3743601 | None:intergenic | 35.0% | |
| TTCAACCAACAAGTAATGAG+AGG | + | chr2.2:3744328-3744347 | MS.gene052000:CDS | 35.0% | |
| TTCTTGCTGAATCAAAAGAG+TGG | - | chr2.2:3743735-3743754 | None:intergenic | 35.0% | |
| ! | AGGAATGAATTTTCACCTTG+TGG | + | chr2.2:3744489-3744508 | MS.gene052000:CDS | 35.0% |
| ! | GTTGTTGTTATGAAGGAAGT+TGG | + | chr2.2:3743982-3744001 | MS.gene052000:CDS | 35.0% |
| ! | TAGAGTTGTGACATTTGTTG+AGG | + | chr2.2:3744212-3744231 | MS.gene052000:CDS | 35.0% |
| ! | TCTACAAGCTCTATTTTCCA+AGG | + | chr2.2:3743654-3743673 | MS.gene052000:CDS | 35.0% |
| ! | TGGATTTAGTGATGATGTTG+TGG | + | chr2.2:3744509-3744528 | MS.gene052000:CDS | 35.0% |
| !! | GAGAAATTTGCTAGGCTTAT+GGG | + | chr2.2:3744015-3744034 | MS.gene052000:CDS | 35.0% |
| !! | GCAATAGCTTTGAATTGTGT+TGG | + | chr2.2:3744123-3744142 | MS.gene052000:CDS | 35.0% |
| !!! | GCTATTTTAGAAGCTTTGGA+AGG | + | chr2.2:3743820-3743839 | MS.gene052000:CDS | 35.0% |
| !!! | TGGTGCTATTTTAGAAGCTT+TGG | + | chr2.2:3743816-3743835 | MS.gene052000:CDS | 35.0% |
| ACAATTGTGAGCTTAAGGTG+AGG | - | chr2.2:3743940-3743959 | None:intergenic | 40.0% | |
| AGTTTCAAGAGGTAAGTCCA+TGG | + | chr2.2:3743767-3743786 | MS.gene052000:CDS | 40.0% | |
| GCAACACACTTTGTACTCAA+TGG | + | chr2.2:3743872-3743891 | MS.gene052000:CDS | 40.0% | |
| GTCGTGATCAAGATGGTAAA+TGG | + | chr2.2:3743497-3743516 | MS.gene052000:CDS | 40.0% | |
| TTTCAGGAATGTACCTCACA+TGG | + | chr2.2:3744604-3744623 | MS.gene052000:CDS | 40.0% | |
| TTTGGACACGTAGCATCAAA+TGG | + | chr2.2:3743796-3743815 | MS.gene052000:CDS | 40.0% | |
| ! | ACACTCTTTGAGAAGTTTGG+AGG | - | chr2.2:3743524-3743543 | None:intergenic | 40.0% |
| ! | GAAGGAAGTTGGTCAAAGAA+TGG | + | chr2.2:3743993-3744012 | MS.gene052000:CDS | 40.0% |
| ! | GATGATGATGAAGATGATGG+TGG | + | chr2.2:3744414-3744433 | MS.gene052000:CDS | 40.0% |
| ! | GTAAGTCCATGGACAACTTT+TGG | + | chr2.2:3743778-3743797 | MS.gene052000:CDS | 40.0% |
| ! | GTGACATTTGTTGAGGAAGA+AGG | + | chr2.2:3744219-3744238 | MS.gene052000:CDS | 40.0% |
| ! | TGCACACTCTTTGAGAAGTT+TGG | - | chr2.2:3743527-3743546 | None:intergenic | 40.0% |
| ! | TTTTCCAAGGCAACACAATC+TGG | + | chr2.2:3743667-3743686 | MS.gene052000:CDS | 40.0% |
| !! | GGAGAAATTTGCTAGGCTTA+TGG | + | chr2.2:3744014-3744033 | MS.gene052000:CDS | 40.0% |
| !! | TAAAGAGGTATCAAGCTGGT+TGG | + | chr2.2:3744550-3744569 | MS.gene052000:CDS | 40.0% |
| !! | TTGCTAAAGAGGTATCAAGC+TGG | + | chr2.2:3744546-3744565 | MS.gene052000:CDS | 40.0% |
| AATGTACCTCACATGGAAGG+AGG | + | chr2.2:3744611-3744630 | MS.gene052000:CDS | 45.0% | |
| ACGTGTCCAAAAGTTGTCCA+TGG | - | chr2.2:3743787-3743806 | None:intergenic | 45.0% | |
| AGGAATGTACCTCACATGGA+AGG | + | chr2.2:3744608-3744627 | MS.gene052000:CDS | 45.0% | |
| CAGTTGTTTGGGCATCAACA+TGG | + | chr2.2:3744637-3744656 | MS.gene052000:CDS | 45.0% | |
| CATGTTGATGCCCAAACAAC+TGG | - | chr2.2:3744639-3744658 | None:intergenic | 45.0% | |
| TGTCATCGTCGTGATCAAGA+TGG | + | chr2.2:3743490-3743509 | MS.gene052000:CDS | 45.0% | |
| ! | GCCAAAGCTTCTAGAAGAGT+AGG | - | chr2.2:3743898-3743917 | None:intergenic | 45.0% |
| ! | GCCTACTCTTCTAGAAGCTT+TGG | + | chr2.2:3743894-3743913 | MS.gene052000:CDS | 45.0% |
| !! | ACGTCAAAGCGTTGCTAAAG+AGG | + | chr2.2:3744535-3744554 | MS.gene052000:CDS | 45.0% |
| GAAGGAGGAGCCAGTTGTTT+GGG | + | chr2.2:3744626-3744645 | MS.gene052000:CDS | 50.0% | |
| GTGACCAGATTGTGTTGCCT+TGG | - | chr2.2:3743674-3743693 | None:intergenic | 50.0% | |
| !! | TGGTCACTTGTTGTGCCTCA+AGG | + | chr2.2:3744570-3744589 | MS.gene052000:CDS | 50.0% |
| GGAAGGAGGAGCCAGTTGTT+TGG | + | chr2.2:3744625-3744644 | MS.gene052000:CDS | 55.0% | |
| CTGGCTCCTCCTTCCATGTG+AGG | - | chr2.2:3744620-3744639 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 3743331 | 3744668 | 3743331 | ID=MS.gene052000 |
| chr2.2 | mRNA | 3743331 | 3744668 | 3743331 | ID=MS.gene052000.t1;Parent=MS.gene052000 |
| chr2.2 | exon | 3743331 | 3744668 | 3743331 | ID=MS.gene052000.t1.exon1;Parent=MS.gene052000.t1 |
| chr2.2 | CDS | 3743331 | 3744668 | 3743331 | ID=cds.MS.gene052000.t1;Parent=MS.gene052000.t1 |
| Gene Sequence |
| Protein sequence |
