Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21512.t1 | XP_003611401.2 | 98.8 | 400 | 5 | 0 | 214 | 613 | 113 | 512 | 1.30E-208 | 736.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21512.t1 | Q8RY73 | 77.4 | 349 | 79 | 0 | 265 | 613 | 185 | 533 | 2.2e-164 | 580.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21512.t1 | G7JYM5 | 98.8 | 400 | 5 | 0 | 214 | 613 | 113 | 512 | 9.5e-209 | 736.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053226 | MS.gene21512 | 0.80526 | 1.45E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene21512 | 0.810903 | 9.15E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene21512 | 0.811275 | 7.59E-51 | -1.69E-46 |
| MS.gene060935 | MS.gene21512 | 0.80692 | 6.51E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87461 | MS.gene21512 | PPI |
| MS.gene025936 | MS.gene21512 | PPI |
| MS.gene22822 | MS.gene21512 | PPI |
| MS.gene012007 | MS.gene21512 | PPI |
| MS.gene76412 | MS.gene21512 | PPI |
| MS.gene024471 | MS.gene21512 | PPI |
| MS.gene050621 | MS.gene21512 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21512.t1 | MTR_5g013580 | 99.000 | 400 | 4 | 0 | 214 | 613 | 113 | 512 | 0.0 | 846 |
| MS.gene21512.t1 | MTR_5g013560 | 86.364 | 198 | 16 | 1 | 1 | 198 | 1 | 187 | 2.91e-115 | 342 |
| MS.gene21512.t1 | MTR_4g099210 | 72.864 | 199 | 53 | 1 | 1 | 198 | 1 | 199 | 5.10e-96 | 293 |
| MS.gene21512.t1 | MTR_3g091440 | 61.500 | 200 | 75 | 1 | 1 | 198 | 1 | 200 | 1.39e-76 | 243 |
| MS.gene21512.t1 | MTR_8g099575 | 53.769 | 199 | 91 | 1 | 1 | 198 | 1 | 199 | 4.05e-71 | 228 |
| MS.gene21512.t1 | MTR_5g096420 | 61.413 | 184 | 71 | 0 | 15 | 198 | 31 | 214 | 1.98e-69 | 224 |
| MS.gene21512.t1 | MTR_3g060730 | 60.870 | 184 | 72 | 0 | 15 | 198 | 31 | 214 | 3.54e-69 | 224 |
| MS.gene21512.t1 | MTR_4g134250 | 59.783 | 184 | 74 | 0 | 15 | 198 | 32 | 215 | 9.77e-69 | 223 |
| MS.gene21512.t1 | MTR_3g091440 | 60.674 | 178 | 70 | 0 | 21 | 198 | 24 | 201 | 2.32e-68 | 222 |
| MS.gene21512.t1 | MTR_1g016430 | 57.635 | 203 | 80 | 1 | 2 | 198 | 36 | 238 | 4.63e-67 | 219 |
| MS.gene21512.t1 | MTR_3g060730 | 60.345 | 174 | 69 | 0 | 25 | 198 | 3 | 176 | 6.97e-65 | 211 |
| MS.gene21512.t1 | MTR_8g099570 | 54.545 | 198 | 88 | 1 | 1 | 198 | 46 | 241 | 8.96e-65 | 213 |
| MS.gene21512.t1 | MTR_1g016430 | 61.047 | 172 | 67 | 0 | 27 | 198 | 1 | 172 | 1.59e-63 | 207 |
| MS.gene21512.t1 | MTR_2g027500 | 53.261 | 184 | 86 | 0 | 15 | 198 | 29 | 212 | 1.36e-61 | 204 |
| MS.gene21512.t1 | MTR_1g016430 | 61.047 | 172 | 67 | 0 | 27 | 198 | 99 | 270 | 2.27e-61 | 205 |
| MS.gene21512.t1 | MTR_2g027480 | 53.261 | 184 | 86 | 0 | 15 | 198 | 34 | 217 | 2.78e-60 | 201 |
| MS.gene21512.t1 | MTR_8g027620 | 52.973 | 185 | 87 | 0 | 14 | 198 | 38 | 222 | 3.63e-60 | 203 |
| MS.gene21512.t1 | MTR_2g027440 | 52.717 | 184 | 87 | 0 | 15 | 198 | 34 | 217 | 2.96e-59 | 198 |
| MS.gene21512.t1 | MTR_4g113505 | 53.179 | 173 | 81 | 0 | 26 | 198 | 6 | 178 | 1.41e-57 | 194 |
| MS.gene21512.t1 | MTR_3g091440 | 61.146 | 157 | 59 | 1 | 1 | 155 | 1 | 157 | 2.77e-56 | 188 |
| MS.gene21512.t1 | MTR_2g027520 | 51.955 | 179 | 86 | 0 | 20 | 198 | 41 | 219 | 7.45e-55 | 186 |
| MS.gene21512.t1 | MTR_8g016170 | 51.323 | 189 | 92 | 0 | 10 | 198 | 56 | 244 | 1.03e-51 | 179 |
| MS.gene21512.t1 | MTR_8g016170 | 52.747 | 182 | 86 | 0 | 10 | 191 | 37 | 218 | 1.54e-51 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21512.t1 | AT4G17620 | 71.292 | 418 | 110 | 3 | 198 | 613 | 124 | 533 | 0.0 | 588 |
| MS.gene21512.t1 | AT4G17620 | 70.813 | 418 | 112 | 3 | 198 | 613 | 124 | 533 | 0.0 | 582 |
| MS.gene21512.t1 | AT4G17620 | 69.856 | 418 | 108 | 4 | 198 | 613 | 124 | 525 | 0.0 | 566 |
| MS.gene21512.t1 | AT5G47100 | 69.849 | 199 | 59 | 1 | 1 | 198 | 1 | 199 | 2.27e-93 | 286 |
| MS.gene21512.t1 | AT4G17615 | 68.844 | 199 | 61 | 1 | 1 | 198 | 1 | 199 | 1.94e-92 | 284 |
| MS.gene21512.t1 | AT4G17615 | 68.844 | 199 | 61 | 1 | 1 | 198 | 1 | 199 | 1.94e-92 | 284 |
| MS.gene21512.t1 | AT4G17615 | 68.844 | 199 | 61 | 1 | 1 | 198 | 1 | 199 | 1.94e-92 | 284 |
| MS.gene21512.t1 | AT4G17615 | 68.500 | 200 | 62 | 1 | 1 | 199 | 1 | 200 | 2.71e-92 | 285 |
| MS.gene21512.t1 | AT5G24270 | 58.128 | 203 | 80 | 1 | 1 | 198 | 1 | 203 | 1.98e-72 | 232 |
| MS.gene21512.t1 | AT5G24270 | 58.128 | 203 | 80 | 1 | 1 | 198 | 1 | 203 | 1.98e-72 | 232 |
| MS.gene21512.t1 | AT5G24270 | 58.128 | 203 | 80 | 1 | 1 | 198 | 1 | 203 | 1.98e-72 | 232 |
| MS.gene21512.t1 | AT5G47100 | 69.620 | 158 | 47 | 1 | 1 | 157 | 1 | 158 | 5.18e-72 | 229 |
| MS.gene21512.t1 | AT4G26570 | 60.109 | 183 | 73 | 0 | 16 | 198 | 32 | 214 | 1.19e-67 | 220 |
| MS.gene21512.t1 | AT5G24270 | 60.000 | 175 | 70 | 0 | 24 | 198 | 4 | 178 | 1.06e-66 | 216 |
| MS.gene21512.t1 | AT1G64480 | 55.435 | 184 | 82 | 0 | 15 | 198 | 20 | 203 | 1.22e-66 | 217 |
| MS.gene21512.t1 | AT1G64480 | 55.435 | 184 | 82 | 0 | 15 | 198 | 20 | 203 | 1.22e-66 | 217 |
| MS.gene21512.t1 | AT1G64480 | 55.435 | 184 | 82 | 0 | 15 | 198 | 20 | 203 | 1.22e-66 | 217 |
| MS.gene21512.t1 | AT1G64480 | 57.062 | 177 | 76 | 0 | 15 | 191 | 20 | 196 | 8.74e-66 | 214 |
| MS.gene21512.t1 | AT4G26570 | 58.824 | 187 | 73 | 1 | 16 | 198 | 32 | 218 | 1.43e-65 | 214 |
| MS.gene21512.t1 | AT5G55990 | 58.470 | 183 | 76 | 0 | 16 | 198 | 32 | 214 | 8.39e-65 | 213 |
| MS.gene21512.t1 | AT5G55990 | 58.470 | 183 | 76 | 0 | 16 | 198 | 32 | 214 | 8.39e-65 | 213 |
| MS.gene21512.t1 | AT4G17615 | 67.808 | 146 | 47 | 0 | 53 | 198 | 12 | 157 | 3.45e-64 | 209 |
| MS.gene21512.t1 | AT4G33000 | 58.101 | 179 | 75 | 0 | 20 | 198 | 57 | 235 | 2.93e-62 | 206 |
| MS.gene21512.t1 | AT4G33000 | 58.101 | 179 | 75 | 0 | 20 | 198 | 67 | 245 | 4.43e-62 | 206 |
| MS.gene21512.t1 | AT5G24270 | 58.000 | 150 | 63 | 0 | 49 | 198 | 7 | 156 | 1.55e-53 | 181 |
| MS.gene21512.t1 | AT4G16350 | 50.802 | 187 | 88 | 1 | 14 | 200 | 28 | 210 | 3.59e-53 | 182 |
| MS.gene21512.t1 | AT4G16350 | 50.802 | 187 | 88 | 1 | 14 | 200 | 28 | 210 | 3.59e-53 | 182 |
| MS.gene21512.t1 | AT4G01420 | 47.120 | 191 | 101 | 0 | 1 | 191 | 1 | 191 | 3.19e-48 | 167 |
| MS.gene21512.t1 | AT4G01420 | 47.120 | 191 | 101 | 0 | 1 | 191 | 1 | 191 | 7.02e-48 | 167 |
| MS.gene21512.t1 | AT4G33000 | 58.088 | 136 | 57 | 0 | 20 | 155 | 57 | 192 | 2.31e-44 | 157 |
| MS.gene21512.t1 | AT4G33000 | 58.088 | 136 | 57 | 0 | 20 | 155 | 57 | 192 | 2.31e-44 | 157 |
| MS.gene21512.t1 | AT4G33000 | 58.519 | 135 | 56 | 0 | 20 | 154 | 57 | 191 | 4.54e-44 | 157 |
| MS.gene21512.t1 | AT4G26560 | 45.000 | 180 | 86 | 2 | 32 | 198 | 23 | 202 | 8.03e-42 | 150 |
| MS.gene21512.t1 | AT4G33000 | 60.000 | 90 | 36 | 0 | 20 | 109 | 57 | 146 | 1.31e-26 | 106 |
Find 122 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGCTCTCCGTCTGCTCTTC+TGG | 0.061101 | 5.3:-6751139 | None:intergenic |
| AAATCACTTTGTGGTCTTTC+TGG | 0.112221 | 5.3:-6750542 | None:intergenic |
| CATACATTTGTATAGGATTT+AGG | 0.157669 | 5.3:+6751614 | MS.gene21512:CDS |
| TTCTGTGATTAAGACAAAAT+TGG | 0.167983 | 5.3:+6751194 | MS.gene21512:CDS |
| AGGAAGGGAGTAATTGATTT+TGG | 0.180677 | 5.3:+6737881 | MS.gene21512:CDS |
| GTTTCTGATGCAAGAATTAT+TGG | 0.187943 | 5.3:-6734950 | None:intergenic |
| TTTGGCAATTAGATGTTATC+TGG | 0.198464 | 5.3:+6751083 | MS.gene21512:intron |
| TATCCTCAGAGGCAGAATTT+TGG | 0.221848 | 5.3:+6748339 | MS.gene21512:CDS |
| TTGACTTCTTGTGGTGCATT+AGG | 0.224162 | 5.3:-6737935 | None:intergenic |
| GAGAGAAACTGCTAAAGTTT+TGG | 0.230993 | 5.3:+6751458 | MS.gene21512:CDS |
| TATTCTCTGTGTAATATCTT+TGG | 0.238375 | 5.3:-6751846 | None:intergenic |
| CGCCATATCACTGAAGATAT+TGG | 0.313720 | 5.3:+6749865 | MS.gene21512:CDS |
| GTTGATTACCTACCACAAAA+TGG | 0.317863 | 5.3:-6750145 | None:intergenic |
| GGCTCTCCGTCTGCTCTTCT+GGG | 0.318433 | 5.3:-6751138 | None:intergenic |
| TGACTTCTTGTGGTGCATTA+GGG | 0.326113 | 5.3:-6737934 | None:intergenic |
| CGCGCCACCTTTCAACCGTT+TGG | 0.326781 | 5.3:+6752351 | MS.gene21512:CDS |
| GAGGTATTATGCTGGCTTTA+TGG | 0.328410 | 5.3:+6752170 | MS.gene21512:CDS |
| CTCCAATATCTTCAGTGATA+TGG | 0.332949 | 5.3:-6749867 | None:intergenic |
| TCTGTGATTAAGACAAAATT+GGG | 0.335148 | 5.3:+6751195 | MS.gene21512:CDS |
| CTTGCAGATTCAGTCATTCC+TGG | 0.335151 | 5.3:+6751582 | MS.gene21512:intron |
| CCGGGTTGTTCGTATTATTA+CGG | 0.353547 | 5.3:-6748233 | None:intergenic |
| TCTATCTTCCCGTCTTGGTT+TGG | 0.353706 | 5.3:-6739159 | None:intergenic |
| CGCCATGAGCCTTGGGAAAT+GGG | 0.358477 | 5.3:+6750473 | MS.gene21512:CDS |
| TCGCCATGAGCCTTGGGAAA+TGG | 0.363810 | 5.3:+6750472 | MS.gene21512:CDS |
| AGGTGACTTGTTATTACATC+TGG | 0.374070 | 5.3:-6752397 | None:intergenic |
| TCATGACACTACCTTATCTA+AGG | 0.375010 | 5.3:+6739232 | MS.gene21512:CDS |
| CTGCCTGGCGTTTGCGGACG+AGG | 0.388026 | 5.3:+6752151 | MS.gene21512:CDS |
| ATTATTGGGTCTTCCTGCTC+TGG | 0.393843 | 5.3:-6734935 | None:intergenic |
| TTTCTGATGCAAGAATTATT+GGG | 0.398145 | 5.3:-6734949 | None:intergenic |
| CTTATATTCGCCATGAGCCT+TGG | 0.404077 | 5.3:+6750465 | MS.gene21512:CDS |
| ATTTGTCTATCTTCCCGTCT+TGG | 0.409151 | 5.3:-6739164 | None:intergenic |
| GCTGGCATTCTTCCGCGTCC+TGG | 0.412844 | 5.3:+6748312 | MS.gene21512:CDS |
| AAATTCTGCCTCTGAGGATA+AGG | 0.415076 | 5.3:-6748336 | None:intergenic |
| TGGAGTCTGCCTGGCGTTTG+CGG | 0.424538 | 5.3:+6752145 | MS.gene21512:CDS |
| CTAAATCCTATACAAATGTA+TGG | 0.431174 | 5.3:-6751613 | None:intergenic |
| ATGATGCAGGCCGTCTTGTT+CGG | 0.436710 | 5.3:+6751807 | MS.gene21512:CDS |
| CTCTATGATCTGGACAATAC+AGG | 0.438032 | 5.3:+6738402 | MS.gene21512:CDS |
| CAATCTATCTTGACTTCTTG+TGG | 0.438399 | 5.3:-6737944 | None:intergenic |
| AAATGTATGGAACGCCTGCC+AGG | 0.446132 | 5.3:-6751600 | None:intergenic |
| CTGCGATCTAAATCACTTTG+TGG | 0.446570 | 5.3:-6750551 | None:intergenic |
| CTTTCAGGAAGAATTTCAAT+TGG | 0.448198 | 5.3:+6737247 | MS.gene21512:intron |
| TTATATTCGCCATGAGCCTT+GGG | 0.449517 | 5.3:+6750466 | MS.gene21512:CDS |
| GCTATAGTCGTGCAGAAGGC+GGG | 0.453075 | 5.3:+6749686 | MS.gene21512:CDS |
| TTGGCAGGGTGGAGTCTGCC+TGG | 0.464806 | 5.3:+6752136 | MS.gene21512:intron |
| GACTTAGGCTCAGAAGGTTA+TGG | 0.475541 | 5.3:+6750074 | MS.gene21512:intron |
| GGCGTTCCATACATTTGTAT+AGG | 0.479776 | 5.3:+6751607 | MS.gene21512:CDS |
| GTTGTTCGTATTATTACGGA+TGG | 0.484281 | 5.3:-6748229 | None:intergenic |
| TTCTGGGATCTTCAGTGGCA+AGG | 0.495567 | 5.3:-6751122 | None:intergenic |
| GCCTTCTGCACGACTATAGC+AGG | 0.501287 | 5.3:-6749683 | None:intergenic |
| GGGGTGGTGGACGTGGTCGT+TGG | 0.505862 | 5.3:+6748262 | MS.gene21512:CDS |
| TTGTGTACTCCCATTTCCCA+AGG | 0.506004 | 5.3:-6750482 | None:intergenic |
| TCTATTTGATGTGAAGAGGA+AGG | 0.506361 | 5.3:+6737865 | MS.gene21512:CDS |
| TTGGCAATTAGATGTTATCT+GGG | 0.506474 | 5.3:+6751084 | MS.gene21512:intron |
| CAGCATAATGATAGAGGAGC+TGG | 0.510421 | 5.3:+6748294 | MS.gene21512:CDS |
| AGGAAGAATATTTCCAGAGC+AGG | 0.512363 | 5.3:+6734922 | MS.gene21512:CDS |
| TGCTATAGTCGTGCAGAAGG+CGG | 0.514503 | 5.3:+6749685 | MS.gene21512:CDS |
| TGAAGAAACTCTGTCAAGAA+AGG | 0.514756 | 5.3:+6748431 | MS.gene21512:CDS |
| ATGGGTTGCTACCACTCTAA+AGG | 0.516160 | 5.3:+6734902 | MS.gene21512:CDS |
| GGACGTGGTCGTTGGCAACA+AGG | 0.516272 | 5.3:+6748270 | MS.gene21512:CDS |
| CTCCCATTTCCCAAGGCTCA+TGG | 0.517450 | 5.3:-6750475 | None:intergenic |
| CAAGGGCAGCATAATGATAG+AGG | 0.517610 | 5.3:+6748288 | MS.gene21512:CDS |
| AATACGAACAACCCGGGAAG+AGG | 0.518689 | 5.3:+6748240 | MS.gene21512:CDS |
| TGCCTCTGAGGATAAGGTCC+AGG | 0.524197 | 5.3:-6748330 | None:intergenic |
| AGTGGGTCGGTCATTGATGA+TGG | 0.525241 | 5.3:+6735294 | MS.gene21512:CDS |
| TATCTTGATGGGTGCTGAGA+TGG | 0.529076 | 5.3:+6751227 | MS.gene21512:CDS |
| CAGATTCAGTCATTCCTGGC+AGG | 0.531148 | 5.3:+6751586 | MS.gene21512:intron |
| TGCTGTGATACGACTACTGA+TGG | 0.531330 | 5.3:+6751252 | MS.gene21512:CDS |
| GGAGAATCTCTTCACAAGTC+GGG | 0.532057 | 5.3:+6737292 | MS.gene21512:CDS |
| ATACCTCGTCCGCAAACGCC+AGG | 0.534549 | 5.3:-6752154 | None:intergenic |
| ATGCTGATCCAAACCAAGAC+GGG | 0.536746 | 5.3:+6739151 | MS.gene21512:CDS |
| GGGAAATGGGAGTACACAAA+AGG | 0.545125 | 5.3:+6750486 | MS.gene21512:CDS |
| TTGTTCTATTTGATGTGAAG+AGG | 0.545682 | 5.3:+6737861 | MS.gene21512:CDS |
| ATACGAACAACCCGGGAAGA+GGG | 0.552800 | 5.3:+6748241 | MS.gene21512:CDS |
| GGGGCTCACCGTATCTTGAT+GGG | 0.555557 | 5.3:+6751216 | MS.gene21512:CDS |
| AGAAGTTCCAAACGGTTGAA+AGG | 0.557237 | 5.3:-6752358 | None:intergenic |
| CTATTTGATGTGAAGAGGAA+GGG | 0.557894 | 5.3:+6737866 | MS.gene21512:CDS |
| CTGTCATACAGGGATGATGC+AGG | 0.560137 | 5.3:+6751794 | MS.gene21512:intron |
| AAAACAGACTTAGGCTCAGA+AGG | 0.561278 | 5.3:+6750068 | MS.gene21512:intron |
| TTATGCAAATACCTTAGATA+AGG | 0.561624 | 5.3:-6739243 | None:intergenic |
| TTGCGGACGAGGTATTATGC+TGG | 0.562925 | 5.3:+6752162 | MS.gene21512:CDS |
| GAAATATTCTTCCTTTAGAG+TGG | 0.564614 | 5.3:-6734913 | None:intergenic |
| ACGAACAACCCGGGAAGAGG+GGG | 0.566118 | 5.3:+6748243 | MS.gene21512:CDS |
| TGCTCTTCTGGGATCTTCAG+TGG | 0.571759 | 5.3:-6751127 | None:intergenic |
| CACAAAGTGATTTAGATCGC+AGG | 0.574140 | 5.3:+6750552 | MS.gene21512:CDS |
| CTTCTTGTGGTGCATTAGGG+TGG | 0.574436 | 5.3:-6737931 | None:intergenic |
| TGAGGATAAGGTCCAGGACG+CGG | 0.577599 | 5.3:-6748324 | None:intergenic |
| AGGAGAATCTCTTCACAAGT+CGG | 0.578547 | 5.3:+6737291 | MS.gene21512:CDS |
| CTATAGTCGTGCAGAAGGCG+GGG | 0.578781 | 5.3:+6749687 | MS.gene21512:CDS |
| GACGTGGTCGTTGGCAACAA+GGG | 0.579752 | 5.3:+6748271 | MS.gene21512:CDS |
| GATCGAAACAATTATTCAGA+AGG | 0.580669 | 5.3:+6739017 | MS.gene21512:CDS |
| GAAGATCCCAGAAGAGCAGA+CGG | 0.581979 | 5.3:+6751132 | MS.gene21512:CDS |
| ATTGGAGCTGATTTGAACGA+AGG | 0.584782 | 5.3:+6749883 | MS.gene21512:CDS |
| CTATAGCAGGCAAGTTCACA+AGG | 0.584854 | 5.3:-6749670 | None:intergenic |
| TACGAACAACCCGGGAAGAG+GGG | 0.585770 | 5.3:+6748242 | MS.gene21512:CDS |
| CACAGAACAAAATTCAACAT+TGG | 0.586435 | 5.3:-6751178 | None:intergenic |
| GCCTGCTATAGTCGTGCAGA+AGG | 0.591701 | 5.3:+6749682 | MS.gene21512:CDS |
| GAGCTTGCAGAAGTTCCAAA+CGG | 0.601546 | 5.3:-6752366 | None:intergenic |
| TACCCAAAATTCTGCCTCTG+AGG | 0.603135 | 5.3:-6748342 | None:intergenic |
| TCTCAGCACCCATCAAGATA+CGG | 0.605709 | 5.3:-6751224 | None:intergenic |
| TTGGCATCAACATCATGTAT+CGG | 0.605933 | 5.3:-6751159 | None:intergenic |
| CCGTAATAATACGAACAACC+CGG | 0.607451 | 5.3:+6748233 | MS.gene21512:CDS |
| AGATGTAATAACAAGTCACC+TGG | 0.607473 | 5.3:+6752399 | MS.gene21512:CDS |
| TTCGTATTATTACGGATGGG+AGG | 0.610071 | 5.3:-6748225 | None:intergenic |
| TTGTTCGTATTATTACGGAT+GGG | 0.612923 | 5.3:-6748228 | None:intergenic |
| TTACCTTGTTCAGATTGTTG+CGG | 0.618634 | 5.3:-6750274 | None:intergenic |
| TATGGTAATAGGTTTCAGAA+TGG | 0.620990 | 5.3:+6748363 | MS.gene21512:CDS |
| GATGCTGATCCAAACCAAGA+CGG | 0.623772 | 5.3:+6739150 | MS.gene21512:CDS |
| CTGTGATTAAGACAAAATTG+GGG | 0.629784 | 5.3:+6751196 | MS.gene21512:CDS |
| AGTTCCAAACGGTTGAAAGG+TGG | 0.634627 | 5.3:-6752355 | None:intergenic |
| TGATGATGGACTAATAAGCA+AGG | 0.636514 | 5.3:+6735308 | MS.gene21512:CDS |
| GCATTTCAGTCCGAACAAGA+CGG | 0.638960 | 5.3:-6751817 | None:intergenic |
| ATGGGAGTACACAAAAGGAA+TGG | 0.640999 | 5.3:+6750491 | MS.gene21512:CDS |
| CGTAATAATACGAACAACCC+GGG | 0.655412 | 5.3:+6748234 | MS.gene21512:CDS |
| AGACAAAACGTTCATCGCGG+TGG | 0.657013 | 5.3:-6748386 | None:intergenic |
| GGAAGATAGACAAATTCGAG+TGG | 0.660939 | 5.3:+6739172 | MS.gene21512:CDS |
| GTCCTGGACCTTATCCTCAG+AGG | 0.674041 | 5.3:+6748328 | MS.gene21512:CDS |
| TGTGATTAAGACAAAATTGG+GGG | 0.674231 | 5.3:+6751197 | MS.gene21512:CDS |
| AAAGTGATTTAGATCGCAGG+AGG | 0.695618 | 5.3:+6750555 | MS.gene21512:CDS |
| GTACCGCAACAATCTGAACA+AGG | 0.701773 | 5.3:+6750271 | MS.gene21512:CDS |
| GCAGTTGAATTATCATAACG+AGG | 0.728754 | 5.3:+6751423 | MS.gene21512:intron |
| GGAGTTAAAGACAAGTTACG+AGG | 0.731121 | 5.3:+6751290 | MS.gene21512:CDS |
| CAGAGACAAAACGTTCATCG+CGG | 0.738071 | 5.3:-6748389 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 6734902 | 6752432 | 6734902 | ID=MS.gene21512 |
| chr5.3 | mRNA | 6734902 | 6752432 | 6734902 | ID=MS.gene21512.t1;Parent=MS.gene21512 |
| chr5.3 | exon | 6734902 | 6734977 | 6734902 | ID=MS.gene21512.t1.exon1;Parent=MS.gene21512.t1 |
| chr5.3 | CDS | 6734902 | 6734977 | 6734902 | ID=cds.MS.gene21512.t1;Parent=MS.gene21512.t1 |
| chr5.3 | exon | 6735247 | 6735329 | 6735247 | ID=MS.gene21512.t1.exon2;Parent=MS.gene21512.t1 |
| chr5.3 | CDS | 6735247 | 6735329 | 6735247 | ID=cds.MS.gene21512.t1;Parent=MS.gene21512.t1 |
| chr5.3 | exon | 6737254 | 6737313 | 6737254 | ID=MS.gene21512.t1.exon3;Parent=MS.gene21512.t1 |
| chr5.3 | CDS | 6737254 | 6737313 | 6737254 | ID=cds.MS.gene21512.t1;Parent=MS.gene21512.t1 |
| chr5.3 | exon | 6737857 | 6737965 | 6737857 | ID=MS.gene21512.t1.exon4;Parent=MS.gene21512.t1 |
| chr5.3 | CDS | 6737857 | 6737965 | 6737857 | ID=cds.MS.gene21512.t1;Parent=MS.gene21512.t1 |
| chr5.3 | exon | 6738391 | 6738443 | 6738391 | ID=MS.gene21512.t1.exon5;Parent=MS.gene21512.t1 |
| chr5.3 | CDS | 6738391 | 6738443 | 6738391 | ID=cds.MS.gene21512.t1;Parent=MS.gene21512.t1 |
| chr5.3 | exon | 6738958 | 6739038 | 6738958 | ID=MS.gene21512.t1.exon6;Parent=MS.gene21512.t1 |
| chr5.3 | CDS | 6738958 | 6739038 | 6738958 | ID=cds.MS.gene21512.t1;Parent=MS.gene21512.t1 |
| chr5.3 | exon | 6739141 | 6739253 | 6739141 | ID=MS.gene21512.t1.exon7;Parent=MS.gene21512.t1 |
| chr5.3 | CDS | 6739141 | 6739253 | 6739141 | ID=cds.MS.gene21512.t1;Parent=MS.gene21512.t1 |
| chr5.3 | exon | 6742667 | 6742737 | 6742667 | ID=MS.gene21512.t1.exon8;Parent=MS.gene21512.t1 |
| chr5.3 | CDS | 6742667 | 6742737 | 6742667 | ID=cds.MS.gene21512.t1;Parent=MS.gene21512.t1 |
| chr5.3 | exon | 6748220 | 6748470 | 6748220 | ID=MS.gene21512.t1.exon9;Parent=MS.gene21512.t1 |
| chr5.3 | CDS | 6748220 | 6748470 | 6748220 | ID=cds.MS.gene21512.t1;Parent=MS.gene21512.t1 |
| chr5.3 | exon | 6749670 | 6749735 | 6749670 | ID=MS.gene21512.t1.exon10;Parent=MS.gene21512.t1 |
| chr5.3 | CDS | 6749670 | 6749735 | 6749670 | ID=cds.MS.gene21512.t1;Parent=MS.gene21512.t1 |
| chr5.3 | exon | 6749853 | 6749931 | 6749853 | ID=MS.gene21512.t1.exon11;Parent=MS.gene21512.t1 |
| chr5.3 | CDS | 6749853 | 6749931 | 6749853 | ID=cds.MS.gene21512.t1;Parent=MS.gene21512.t1 |
| chr5.3 | exon | 6750075 | 6750154 | 6750075 | ID=MS.gene21512.t1.exon12;Parent=MS.gene21512.t1 |
| chr5.3 | CDS | 6750075 | 6750154 | 6750075 | ID=cds.MS.gene21512.t1;Parent=MS.gene21512.t1 |
| chr5.3 | exon | 6750269 | 6750292 | 6750269 | ID=MS.gene21512.t1.exon13;Parent=MS.gene21512.t1 |
| chr5.3 | CDS | 6750269 | 6750292 | 6750269 | ID=cds.MS.gene21512.t1;Parent=MS.gene21512.t1 |
| chr5.3 | exon | 6750452 | 6750576 | 6750452 | ID=MS.gene21512.t1.exon14;Parent=MS.gene21512.t1 |
| chr5.3 | CDS | 6750452 | 6750576 | 6750452 | ID=cds.MS.gene21512.t1;Parent=MS.gene21512.t1 |
| chr5.3 | exon | 6751095 | 6751311 | 6751095 | ID=MS.gene21512.t1.exon15;Parent=MS.gene21512.t1 |
| chr5.3 | CDS | 6751095 | 6751311 | 6751095 | ID=cds.MS.gene21512.t1;Parent=MS.gene21512.t1 |
| chr5.3 | exon | 6751427 | 6751480 | 6751427 | ID=MS.gene21512.t1.exon16;Parent=MS.gene21512.t1 |
| chr5.3 | CDS | 6751427 | 6751480 | 6751427 | ID=cds.MS.gene21512.t1;Parent=MS.gene21512.t1 |
| chr5.3 | exon | 6751589 | 6751635 | 6751589 | ID=MS.gene21512.t1.exon17;Parent=MS.gene21512.t1 |
| chr5.3 | CDS | 6751589 | 6751635 | 6751589 | ID=cds.MS.gene21512.t1;Parent=MS.gene21512.t1 |
| chr5.3 | exon | 6751805 | 6751889 | 6751805 | ID=MS.gene21512.t1.exon18;Parent=MS.gene21512.t1 |
| chr5.3 | CDS | 6751805 | 6751889 | 6751805 | ID=cds.MS.gene21512.t1;Parent=MS.gene21512.t1 |
| chr5.3 | exon | 6752143 | 6752206 | 6752143 | ID=MS.gene21512.t1.exon19;Parent=MS.gene21512.t1 |
| chr5.3 | CDS | 6752143 | 6752206 | 6752143 | ID=cds.MS.gene21512.t1;Parent=MS.gene21512.t1 |
| chr5.3 | exon | 6752329 | 6752432 | 6752329 | ID=MS.gene21512.t1.exon20;Parent=MS.gene21512.t1 |
| chr5.3 | CDS | 6752329 | 6752432 | 6752329 | ID=cds.MS.gene21512.t1;Parent=MS.gene21512.t1 |
| Gene Sequence |
| Protein sequence |
