Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21844.t1 | XP_003610723.1 | 100 | 325 | 0 | 0 | 1 | 325 | 1 | 325 | 1.30E-175 | 625.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21844.t1 | Q43317 | 86.2 | 325 | 45 | 0 | 1 | 325 | 1 | 325 | 8.2e-158 | 557.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21844.t1 | B7FKU7 | 100.0 | 325 | 0 | 0 | 1 | 325 | 1 | 325 | 9.6e-176 | 625.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene21844 | MS.gene023918 | PPI |
| MS.gene21844 | MS.gene52446 | PPI |
| MS.gene058651 | MS.gene21844 | PPI |
| MS.gene054826 | MS.gene21844 | PPI |
| MS.gene21844 | MS.gene02466 | PPI |
| MS.gene21844 | MS.gene47527 | PPI |
| MS.gene21844 | MS.gene26579 | PPI |
| MS.gene21844 | MS.gene008717 | PPI |
| MS.gene21844 | MS.gene39577 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21844.t1 | MTR_5g006340 | 100.000 | 325 | 0 | 0 | 1 | 325 | 1 | 325 | 0.0 | 648 |
| MS.gene21844.t1 | MTR_1g103690 | 93.538 | 325 | 21 | 0 | 1 | 325 | 1 | 325 | 0.0 | 567 |
| MS.gene21844.t1 | MTR_1g081610 | 87.346 | 324 | 41 | 0 | 1 | 324 | 1 | 324 | 0.0 | 528 |
| MS.gene21844.t1 | MTR_4g087490 | 70.126 | 318 | 95 | 0 | 8 | 325 | 47 | 364 | 8.40e-169 | 473 |
| MS.gene21844.t1 | MTR_1g081620 | 73.209 | 321 | 86 | 0 | 4 | 324 | 3 | 323 | 1.03e-165 | 464 |
| MS.gene21844.t1 | MTR_1g081625 | 74.062 | 320 | 83 | 0 | 5 | 324 | 4 | 323 | 2.66e-162 | 456 |
| MS.gene21844.t1 | MTR_4g087510 | 65.723 | 318 | 100 | 2 | 8 | 325 | 47 | 355 | 3.79e-156 | 441 |
| MS.gene21844.t1 | MTR_7g078070 | 62.025 | 316 | 120 | 0 | 6 | 321 | 59 | 374 | 4.17e-144 | 412 |
| MS.gene21844.t1 | MTR_7g078070 | 62.662 | 308 | 115 | 0 | 14 | 321 | 7 | 314 | 4.99e-142 | 404 |
| MS.gene21844.t1 | MTR_7g087110 | 62.857 | 315 | 107 | 1 | 7 | 321 | 64 | 368 | 9.35e-136 | 390 |
| MS.gene21844.t1 | MTR_4g087520 | 74.074 | 270 | 70 | 0 | 56 | 325 | 1 | 270 | 2.40e-134 | 382 |
| MS.gene21844.t1 | MTR_1g081640 | 70.318 | 283 | 84 | 0 | 3 | 285 | 2 | 284 | 9.09e-130 | 373 |
| MS.gene21844.t1 | MTR_7g078070 | 62.989 | 281 | 104 | 0 | 41 | 321 | 1 | 281 | 9.69e-129 | 369 |
| MS.gene21844.t1 | MTR_5g095670 | 29.462 | 353 | 190 | 6 | 12 | 307 | 48 | 398 | 1.48e-40 | 147 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21844.t1 | AT4G14880 | 84.013 | 319 | 51 | 0 | 6 | 324 | 3 | 321 | 0.0 | 517 |
| MS.gene21844.t1 | AT4G14880 | 84.013 | 319 | 51 | 0 | 6 | 324 | 3 | 321 | 0.0 | 517 |
| MS.gene21844.t1 | AT4G14880 | 84.013 | 319 | 51 | 0 | 6 | 324 | 3 | 321 | 0.0 | 517 |
| MS.gene21844.t1 | AT4G14880 | 84.013 | 319 | 51 | 0 | 6 | 324 | 3 | 321 | 0.0 | 517 |
| MS.gene21844.t1 | AT4G14880 | 84.013 | 319 | 51 | 0 | 6 | 324 | 3 | 321 | 0.0 | 517 |
| MS.gene21844.t1 | AT3G59760 | 74.843 | 318 | 80 | 0 | 7 | 324 | 112 | 429 | 5.30e-167 | 471 |
| MS.gene21844.t1 | AT3G59760 | 74.843 | 318 | 80 | 0 | 7 | 324 | 112 | 429 | 8.43e-167 | 471 |
| MS.gene21844.t1 | AT2G43750 | 74.845 | 322 | 81 | 0 | 3 | 324 | 70 | 391 | 1.81e-165 | 466 |
| MS.gene21844.t1 | AT2G43750 | 74.845 | 322 | 81 | 0 | 3 | 324 | 70 | 391 | 1.81e-165 | 466 |
| MS.gene21844.t1 | AT3G04940 | 67.901 | 324 | 104 | 0 | 1 | 324 | 1 | 324 | 9.98e-157 | 441 |
| MS.gene21844.t1 | AT3G04940 | 67.901 | 324 | 104 | 0 | 1 | 324 | 1 | 324 | 9.98e-157 | 441 |
| MS.gene21844.t1 | AT5G28020 | 70.405 | 321 | 95 | 0 | 4 | 324 | 3 | 323 | 2.80e-155 | 438 |
| MS.gene21844.t1 | AT5G28020 | 70.405 | 321 | 95 | 0 | 4 | 324 | 3 | 323 | 2.80e-155 | 438 |
| MS.gene21844.t1 | AT5G28020 | 70.405 | 321 | 95 | 0 | 4 | 324 | 3 | 323 | 2.80e-155 | 438 |
| MS.gene21844.t1 | AT5G28020 | 70.405 | 321 | 95 | 0 | 4 | 324 | 3 | 323 | 2.80e-155 | 438 |
| MS.gene21844.t1 | AT5G28020 | 70.405 | 321 | 95 | 0 | 4 | 324 | 3 | 323 | 2.80e-155 | 438 |
| MS.gene21844.t1 | AT3G59760 | 75.517 | 290 | 71 | 0 | 7 | 296 | 112 | 401 | 1.95e-151 | 432 |
| MS.gene21844.t1 | AT3G22460 | 78.889 | 270 | 37 | 1 | 56 | 325 | 1 | 250 | 1.30e-150 | 423 |
| MS.gene21844.t1 | AT5G28030 | 66.978 | 321 | 106 | 0 | 4 | 324 | 3 | 323 | 1.77e-145 | 413 |
| MS.gene21844.t1 | AT5G28030 | 66.978 | 321 | 106 | 0 | 4 | 324 | 3 | 323 | 1.77e-145 | 413 |
| MS.gene21844.t1 | AT5G28030 | 66.978 | 321 | 106 | 0 | 4 | 324 | 3 | 323 | 1.77e-145 | 413 |
| MS.gene21844.t1 | AT5G28030 | 66.978 | 321 | 106 | 0 | 4 | 324 | 3 | 323 | 1.77e-145 | 413 |
| MS.gene21844.t1 | AT3G61440 | 61.218 | 312 | 121 | 0 | 10 | 321 | 51 | 362 | 1.58e-135 | 389 |
| MS.gene21844.t1 | AT3G03630 | 61.875 | 320 | 112 | 1 | 4 | 323 | 95 | 404 | 9.92e-133 | 384 |
| MS.gene21844.t1 | AT3G61440 | 62.782 | 266 | 99 | 0 | 56 | 321 | 1 | 266 | 5.08e-117 | 339 |
| MS.gene21844.t1 | AT3G22460 | 86.188 | 181 | 25 | 0 | 8 | 188 | 8 | 188 | 2.27e-114 | 329 |
| MS.gene21844.t1 | AT5G28030 | 64.919 | 248 | 87 | 0 | 4 | 251 | 3 | 250 | 2.48e-111 | 324 |
| MS.gene21844.t1 | AT3G61440 | 59.160 | 262 | 107 | 0 | 10 | 271 | 51 | 312 | 8.64e-109 | 320 |
| MS.gene21844.t1 | AT5G28020 | 68.354 | 237 | 75 | 0 | 88 | 324 | 1 | 237 | 6.09e-103 | 301 |
| MS.gene21844.t1 | AT3G61440 | 61.667 | 240 | 92 | 0 | 82 | 321 | 2 | 241 | 8.75e-103 | 301 |
| MS.gene21844.t1 | AT1G55880 | 28.177 | 362 | 200 | 6 | 4 | 307 | 36 | 395 | 2.73e-38 | 140 |
| MS.gene21844.t1 | AT1G55880 | 30.833 | 240 | 124 | 3 | 12 | 210 | 44 | 282 | 4.31e-32 | 122 |
Find 87 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTGACGCATTTGTTTC+TGG | 0.143270 | 5.2:+1140934 | MS.gene21844:CDS |
| AGAATCATTCTATTAGCTTT+TGG | 0.227837 | 5.2:+1140654 | MS.gene21844:CDS |
| GCTCCTTTCATTCCCTTTGC+AGG | 0.253208 | 5.2:-1140699 | None:intergenic |
| GATAAAACTAACCTTTATAT+TGG | 0.258346 | 5.2:-1141013 | None:intergenic |
| AGAGCAAAATTCCAATATAA+AGG | 0.317751 | 5.2:+1141002 | MS.gene21844:CDS |
| TTGTAGGTGGGAATATCTTC+TGG | 0.327966 | 5.2:+1142515 | MS.gene21844:intron |
| GTCTATTTAGATACACTAAT+GGG | 0.361833 | 5.2:-1140110 | None:intergenic |
| TGCCCGAGTTGCTGCAAAAC+TGG | 0.363669 | 5.2:+1140149 | MS.gene21844:CDS |
| ATGCCAGTGTTACCACTTGT+TGG | 0.374604 | 5.2:-1140555 | None:intergenic |
| AAACCACCGGTCCAGAGATA+TGG | 0.380421 | 5.2:+1140896 | MS.gene21844:CDS |
| AAATTGACGCATTTGTTTCT+GGG | 0.385410 | 5.2:+1140935 | MS.gene21844:CDS |
| TGGCATTGGATTAGCCTTCA+TGG | 0.398016 | 5.2:+1140572 | MS.gene21844:CDS |
| TGCTGCAAAACTGGAATTGA+TGG | 0.408030 | 5.2:+1140158 | MS.gene21844:CDS |
| ATTGGTGCTGGCTTTGTCCC+TGG | 0.414143 | 5.2:+1141690 | MS.gene21844:CDS |
| AGTCTATTTAGATACACTAA+TGG | 0.416944 | 5.2:-1140111 | None:intergenic |
| CTCCTTTCATTCCCTTTGCA+GGG | 0.417063 | 5.2:-1140698 | None:intergenic |
| TTTGTTTCTGGGATAGGTAC+TGG | 0.422736 | 5.2:+1140946 | MS.gene21844:CDS |
| GTGGAGAGTCCAGTGCTCTC+AGG | 0.426755 | 5.2:+1141162 | MS.gene21844:CDS |
| TTTCTCTTTATGTAGCTGAT+TGG | 0.431372 | 5.2:+1141129 | MS.gene21844:intron |
| ATTTGTGCTGTGTAGTTGAT+TGG | 0.433507 | 5.2:+1140081 | MS.gene21844:intron |
| TCTGTGCCTTTCCATATCTC+TGG | 0.434331 | 5.2:-1140907 | None:intergenic |
| CTTTCAAGACTCATTGAAGC+AGG | 0.439398 | 5.2:-1140630 | None:intergenic |
| TTATATACCTTAGGATTGGC+AGG | 0.440849 | 5.2:-1140789 | None:intergenic |
| TTTAAGAGCAAGAAGCTTTG+CGG | 0.453369 | 5.2:-1142301 | None:intergenic |
| GCCAAAAGGCCAGAAAATGC+TGG | 0.459484 | 5.2:+1142566 | MS.gene21844:CDS |
| AAGCTTCTTGCTCTTAAAGA+AGG | 0.465193 | 5.2:+1142306 | MS.gene21844:CDS |
| GGTGGTACAATAACCGGTGC+TGG | 0.467280 | 5.2:+1140967 | MS.gene21844:CDS |
| GGTACTGGTGGTACAATAAC+CGG | 0.469332 | 5.2:+1140961 | MS.gene21844:CDS |
| AACATGGCGGTCGAAAGGTC+TGG | 0.479511 | 5.2:+1139955 | None:intergenic |
| AATTATGAGCTTGTATCCCT+TGG | 0.481319 | 5.2:-1140601 | None:intergenic |
| AGCCTTCATGGCAGCAGCCA+AGG | 0.482589 | 5.2:+1140584 | MS.gene21844:CDS |
| TTCAAATTGTTGAAGTATGT+AGG | 0.487581 | 5.2:-1140763 | None:intergenic |
| AAGATTCAAGGGATTGGTGC+TGG | 0.499879 | 5.2:+1141678 | MS.gene21844:CDS |
| GCCTTTCCATATCTCTGGAC+CGG | 0.504955 | 5.2:-1140902 | None:intergenic |
| CAAGGTATACCAACCTGTCC+AGG | 0.509257 | 5.2:-1140395 | None:intergenic |
| CCTCACAAGATTCAAGGGAT+TGG | 0.512359 | 5.2:+1141672 | MS.gene21844:CDS |
| TCAGGTCCTCACAAGATTCA+AGG | 0.512591 | 5.2:+1141666 | MS.gene21844:intron |
| AGGTACCTCTCGCCAAAGCT+TGG | 0.513254 | 5.2:-1143498 | None:intergenic |
| TCCCTTGGCTGCTGCCATGA+AGG | 0.514115 | 5.2:-1140586 | None:intergenic |
| CTGATAACATGGCGGTCGAA+AGG | 0.517264 | 5.2:+1139950 | None:intergenic |
| TGGAGAGTCCAGTGCTCTCA+GGG | 0.517606 | 5.2:+1141163 | MS.gene21844:CDS |
| ACAAGTGGTAACACTGGCAT+TGG | 0.517640 | 5.2:+1140558 | MS.gene21844:CDS |
| GCTATTTGAGTCAGTGAGAC+GGG | 0.519281 | 5.2:+1143530 | MS.gene21844:CDS |
| GAGATATGGAAAGGCACAGA+TGG | 0.524158 | 5.2:+1140910 | MS.gene21844:CDS |
| GGGGCTTATCACACCTGGAC+AGG | 0.526431 | 5.2:+1140382 | MS.gene21844:CDS |
| GAGAGCACTGGACTCTCCAC+TGG | 0.526480 | 5.2:-1141159 | None:intergenic |
| GACGCATTTGTTTCTGGGAT+AGG | 0.530954 | 5.2:+1140940 | MS.gene21844:CDS |
| GACCCTGCAAAGGGAATGAA+AGG | 0.540714 | 5.2:+1140696 | MS.gene21844:CDS |
| CATGCTCTAGTGTAAAAGAC+AGG | 0.541025 | 5.2:+1140184 | MS.gene21844:CDS |
| TGTTGAAGTATGTAGGCATT+GGG | 0.542376 | 5.2:-1140756 | None:intergenic |
| CTTTATGTAGCTGATTGGTG+TGG | 0.542393 | 5.2:+1141134 | MS.gene21844:intron |
| TGAAAACCCTGCCAATCCTA+AGG | 0.544470 | 5.2:+1140782 | MS.gene21844:CDS |
| GATTGCTGATGCAGAAGAGA+AGG | 0.556187 | 5.2:+1140361 | MS.gene21844:CDS |
| GAGAAGGGGCTTATCACACC+TGG | 0.558309 | 5.2:+1140377 | MS.gene21844:CDS |
| CAGGTCCTCACAAGATTCAA+GGG | 0.561138 | 5.2:+1141667 | MS.gene21844:intron |
| GAGTTTATATACCTTAGGAT+TGG | 0.561288 | 5.2:-1140793 | None:intergenic |
| GTGGTACAATAACCGGTGCT+GGG | 0.564241 | 5.2:+1140968 | MS.gene21844:CDS |
| CTGCAATTAAGATAGCCAAA+AGG | 0.568848 | 5.2:+1142552 | MS.gene21844:CDS |
| TTTAAGATATTTCCCAGCAC+CGG | 0.569437 | 5.2:-1140980 | None:intergenic |
| CCAAAAGGCCAGAAAATGCT+GGG | 0.570875 | 5.2:+1142567 | MS.gene21844:CDS |
| GCCTTCATGGCAGCAGCCAA+GGG | 0.575694 | 5.2:+1140585 | MS.gene21844:CDS |
| ATTGCTGATGCAGAAGAGAA+GGG | 0.577230 | 5.2:+1140362 | MS.gene21844:CDS |
| TGCTATTTGAGTCAGTGAGA+CGG | 0.579355 | 5.2:+1143529 | MS.gene21844:CDS |
| TTGTTGAAGTATGTAGGCAT+TGG | 0.581978 | 5.2:-1140757 | None:intergenic |
| GATTCAGGGCTCGAAAGTCA+TGG | 0.583977 | 5.2:-1143562 | None:intergenic |
| AGATATGGAAAGGCACAGAT+GGG | 0.603420 | 5.2:+1140911 | MS.gene21844:CDS |
| TACCACTTGTTGGTTCAATG+AGG | 0.607547 | 5.2:-1140545 | None:intergenic |
| GTTTCTGGGATAGGTACTGG+TGG | 0.607715 | 5.2:+1140949 | MS.gene21844:CDS |
| TTTCCATATCTCTGGACCGG+TGG | 0.608117 | 5.2:-1140899 | None:intergenic |
| ACTCAAATAGCACAGAGGAT+AGG | 0.611244 | 5.2:-1143518 | None:intergenic |
| AGATTAACTTCTAAGACACC+AGG | 0.618092 | 5.2:-1141708 | None:intergenic |
| TATATACCTTAGGATTGGCA+GGG | 0.625254 | 5.2:-1140788 | None:intergenic |
| TTTGGCTATCTTAATTGCAG+CGG | 0.625545 | 5.2:-1142549 | None:intergenic |
| GAACCAACAAGTGGTAACAC+TGG | 0.632333 | 5.2:+1140552 | MS.gene21844:CDS |
| GTCCTCATTGAACCAACAAG+TGG | 0.633075 | 5.2:+1140543 | MS.gene21844:CDS |
| TAGGTACATTATGAAACCAC+CGG | 0.634628 | 5.2:+1140883 | MS.gene21844:intron |
| TATCTAAATAGACTTGCAGA+TGG | 0.637010 | 5.2:+1140120 | MS.gene21844:CDS |
| ACCGGTCCAGAGATATGGAA+AGG | 0.637929 | 5.2:+1140901 | MS.gene21844:CDS |
| TCTATTTAGATACACTAATG+GGG | 0.639571 | 5.2:-1140109 | None:intergenic |
| GCTGATTGGTGTGGAACCAG+TGG | 0.641769 | 5.2:+1141143 | MS.gene21844:intron |
| GAGAGTCCAGTGCTCTCAGG+GGG | 0.648364 | 5.2:+1141165 | MS.gene21844:CDS |
| TTGCTGATGCAGAAGAGAAG+GGG | 0.651912 | 5.2:+1140363 | MS.gene21844:CDS |
| CCAATCCCTTGAATCTTGTG+AGG | 0.662558 | 5.2:-1141672 | None:intergenic |
| GATTAACTTCTAAGACACCA+GGG | 0.699313 | 5.2:-1141707 | None:intergenic |
| ATTTGAGTCAGTGAGACGGG+AGG | 0.715909 | 5.2:+1143533 | MS.gene21844:CDS |
| GGAGAGTCCAGTGCTCTCAG+GGG | 0.724433 | 5.2:+1141164 | MS.gene21844:CDS |
| CACTGACTCAAATAGCACAG+AGG | 0.749640 | 5.2:-1143523 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCAATTACAATTTTATTTT+CGG | - | chr5.2:1142163-1142182 | None:intergenic | 10.0% |
| !! | GATATGAAGATTAAAAATTA+AGG | + | chr5.2:1142930-1142949 | MS.gene21844:intron | 15.0% |
| !!! | ATCTCTTTAGTATTTTTTAA+CGG | - | chr5.2:1142851-1142870 | None:intergenic | 15.0% |
| !!! | CATTGATTTTTAAAATTTGT+TGG | + | chr5.2:1141835-1141854 | MS.gene21844:intron | 15.0% |
| !!! | TAAACTTTTATGTATTAATG+TGG | + | chr5.2:1141204-1141223 | MS.gene21844:intron | 15.0% |
| !!! | TTTTAATCTTCATATCAAAA+AGG | - | chr5.2:1142926-1142945 | None:intergenic | 15.0% |
| !! | AAAAAAAAATATGCACTTCT+TGG | + | chr5.2:1141365-1141384 | MS.gene21844:intron | 20.0% |
| !! | AAAAAAAATATGCACTTCTT+GGG | + | chr5.2:1141366-1141385 | MS.gene21844:intron | 20.0% |
| !! | AAAAAAATTAACTAAAGAGC+TGG | + | chr5.2:1142823-1142842 | MS.gene21844:intron | 20.0% |
| !! | AATACTTCAACTAAAAGTTT+AGG | - | chr5.2:1142621-1142640 | None:intergenic | 20.0% |
| !! | AATATCAAAGTAAAGATGTT+TGG | - | chr5.2:1142494-1142513 | None:intergenic | 20.0% |
| !! | ACATGCAAAACAAATATTAA+TGG | - | chr5.2:1140499-1140518 | None:intergenic | 20.0% |
| !! | ATACTTCAACTAAAAGTTTA+GGG | - | chr5.2:1142620-1142639 | None:intergenic | 20.0% |
| !! | ATATAAACTCATTTGTTCTA+TGG | + | chr5.2:1140806-1140825 | MS.gene21844:intron | 20.0% |
| !! | ATATATATTGTTACCATTGT+AGG | + | chr5.2:1140864-1140883 | MS.gene21844:intron | 20.0% |
| !! | ATATCGCAATTTAAATGAAA+GGG | - | chr5.2:1142018-1142037 | None:intergenic | 20.0% |
| !! | ATCATATCTAAATGTAATAG+TGG | - | chr5.2:1143018-1143037 | None:intergenic | 20.0% |
| !! | CTATTACATTTAGATATGAT+TGG | + | chr5.2:1143018-1143037 | MS.gene21844:intron | 20.0% |
| !! | GATAAAACTAACCTTTATAT+TGG | - | chr5.2:1141016-1141035 | None:intergenic | 20.0% |
| !! | TATATCGCAATTTAAATGAA+AGG | - | chr5.2:1142019-1142038 | None:intergenic | 20.0% |
| !!! | ATCTTCCTAAGTATATTTTT+GGG | + | chr5.2:1141033-1141052 | MS.gene21844:intron | 20.0% |
| !!! | ATTAATATTTGTTTTGCATG+TGG | + | chr5.2:1140498-1140517 | MS.gene21844:intron | 20.0% |
| !!! | CATACATCACTATTTTTTTA+AGG | - | chr5.2:1141814-1141833 | None:intergenic | 20.0% |
| !!! | CTTTACTTTGATATTTTTGT+AGG | + | chr5.2:1142499-1142518 | MS.gene21844:intron | 20.0% |
| !!! | GATGTTATTTAAGGATAAAA+TGG | + | chr5.2:1141273-1141292 | MS.gene21844:intron | 20.0% |
| !!! | TATCTTCCTAAGTATATTTT+TGG | + | chr5.2:1141032-1141051 | MS.gene21844:intron | 20.0% |
| !!! | TTAATATTTGTTTTGCATGT+GGG | + | chr5.2:1140499-1140518 | MS.gene21844:intron | 20.0% |
| !!! | TTACAAGTTGATGTTATTTA+AGG | + | chr5.2:1141264-1141283 | MS.gene21844:intron | 20.0% |
| ! | AAACTGGAAAAAAGAAATGT+AGG | - | chr5.2:1142462-1142481 | None:intergenic | 25.0% |
| ! | AATCTTGTATAACGAAACAT+CGG | - | chr5.2:1143425-1143444 | None:intergenic | 25.0% |
| ! | AATTGATGTGTTGTATTAGA+AGG | + | chr5.2:1142176-1142195 | MS.gene21844:intron | 25.0% |
| ! | ACAATTAGATGCAAAAACTA+TGG | - | chr5.2:1141905-1141924 | None:intergenic | 25.0% |
| ! | AGAGCAAAATTCCAATATAA+AGG | + | chr5.2:1141002-1141021 | MS.gene21844:CDS | 25.0% |
| ! | AGTCTATTTAGATACACTAA+TGG | - | chr5.2:1140114-1140133 | None:intergenic | 25.0% |
| ! | ATAAAAGTTTATAACTCACC+AGG | - | chr5.2:1141195-1141214 | None:intergenic | 25.0% |
| ! | ATGATGACAACATGAAATTA+CGG | + | chr5.2:1142890-1142909 | MS.gene21844:intron | 25.0% |
| ! | ATGTTATATATTTGACATGC+AGG | + | chr5.2:1140324-1140343 | MS.gene21844:intron | 25.0% |
| ! | ATTTAAGGATAAAATGGAAG+AGG | + | chr5.2:1141279-1141298 | MS.gene21844:intron | 25.0% |
| ! | CAAATGAGTTTATATACCTT+AGG | - | chr5.2:1140801-1140820 | None:intergenic | 25.0% |
| ! | CTTTATTGAATTCGAACTTT+CGG | - | chr5.2:1143251-1143270 | None:intergenic | 25.0% |
| ! | GAGAATCTTCTTTCAATATT+TGG | - | chr5.2:1141521-1141540 | None:intergenic | 25.0% |
| ! | GTCTATTTAGATACACTAAT+GGG | - | chr5.2:1140113-1140132 | None:intergenic | 25.0% |
| ! | TAAATTGCGATATAAACTTG+AGG | + | chr5.2:1142025-1142044 | MS.gene21844:intron | 25.0% |
| ! | TAACATAATCGTTAAGCATA+CGG | + | chr5.2:1142676-1142695 | MS.gene21844:intron | 25.0% |
| ! | TAATCTTTGCATTATTCAAG+AGG | + | chr5.2:1141772-1141791 | MS.gene21844:intron | 25.0% |
| ! | TCTATTTAGATACACTAATG+GGG | - | chr5.2:1140112-1140131 | None:intergenic | 25.0% |
| ! | TGTTTCGTTATACAAGATTA+TGG | + | chr5.2:1143426-1143445 | MS.gene21844:intron | 25.0% |
| ! | TTAGATGTTAATCTGACATA+TGG | + | chr5.2:1143324-1143343 | MS.gene21844:intron | 25.0% |
| ! | TTCAAATTGTTGAAGTATGT+AGG | - | chr5.2:1140766-1140785 | None:intergenic | 25.0% |
| ! | TTCACCATAAATGTGTAATT+TGG | + | chr5.2:1142250-1142269 | MS.gene21844:intron | 25.0% |
| !! | AAGGCTGTAATTTTATGTTT+TGG | - | chr5.2:1143172-1143191 | None:intergenic | 25.0% |
| !! | TAGATAGAAATGTTAGTTTC+CGG | - | chr5.2:1142786-1142805 | None:intergenic | 25.0% |
| !! | TAGGTTTAGAACTTACAAAT+AGG | - | chr5.2:1142332-1142351 | None:intergenic | 25.0% |
| !! | TATATATTGATCAAAGTGTC+AGG | - | chr5.2:1140851-1140870 | None:intergenic | 25.0% |
| !!! | ACTTTGATATTTTTGTAGGT+GGG | + | chr5.2:1142503-1142522 | MS.gene21844:intron | 25.0% |
| !!! | AGAATCATTCTATTAGCTTT+TGG | + | chr5.2:1140654-1140673 | MS.gene21844:CDS | 25.0% |
| !!! | AGTAACTCCTAAAGTTTTTT+AGG | - | chr5.2:1141330-1141349 | None:intergenic | 25.0% |
| !!! | ATCGTTATGAGTATTGATTT+TGG | + | chr5.2:1140221-1140240 | MS.gene21844:intron | 25.0% |
| !!! | CATCACTATTTTTTTAAGGA+TGG | - | chr5.2:1141810-1141829 | None:intergenic | 25.0% |
| !!! | GAACTTTTTTTGTAATTGGT+TGG | + | chr5.2:1142404-1142423 | MS.gene21844:intron | 25.0% |
| !!! | TACTTTGATATTTTTGTAGG+TGG | + | chr5.2:1142502-1142521 | MS.gene21844:intron | 25.0% |
| !!! | TGTCGAACTTTTTTTGTAAT+TGG | + | chr5.2:1142400-1142419 | MS.gene21844:intron | 25.0% |
| !!! | TTACCAATTTTGTCGTTTTA+TGG | - | chr5.2:1142659-1142678 | None:intergenic | 25.0% |
| !!! | TTCACTTTTCTTTGATATCA+AGG | - | chr5.2:1140416-1140435 | None:intergenic | 25.0% |
| AAAATTGACGCATTTGTTTC+TGG | + | chr5.2:1140934-1140953 | MS.gene21844:CDS | 30.0% | |
| AAGTAAGCTTAAACAACTTG+TGG | + | chr5.2:1141748-1141767 | MS.gene21844:intron | 30.0% | |
| AGGAAGACCTAAAAAACTTT+AGG | + | chr5.2:1141320-1141339 | MS.gene21844:intron | 30.0% | |
| ATACATTGTTTACCTTGACT+TGG | + | chr5.2:1141947-1141966 | MS.gene21844:intron | 30.0% | |
| ATATATTTGACATGCAGGAT+TGG | + | chr5.2:1140329-1140348 | MS.gene21844:intron | 30.0% | |
| ATCAGACAAGAATACGTTAA+GGG | - | chr5.2:1140061-1140080 | None:intergenic | 30.0% | |
| ATGTTGTCTACAGTTTGATA+AGG | + | chr5.2:1141861-1141880 | MS.gene21844:intron | 30.0% | |
| ATTCAATAAAGAAATGCTGC+AGG | + | chr5.2:1143260-1143279 | MS.gene21844:intron | 30.0% | |
| ATTTCATGTTGTCATCATTG+TGG | - | chr5.2:1142888-1142907 | None:intergenic | 30.0% | |
| CTTGTCCCAAAAATATACTT+AGG | - | chr5.2:1141041-1141060 | None:intergenic | 30.0% | |
| GAGTTTATATACCTTAGGAT+TGG | - | chr5.2:1140796-1140815 | None:intergenic | 30.0% | |
| GTTCCATAAAACGACAAAAT+TGG | + | chr5.2:1142653-1142672 | MS.gene21844:intron | 30.0% | |
| GTTCGACAAAGTAGATATTA+AGG | - | chr5.2:1142388-1142407 | None:intergenic | 30.0% | |
| GTTTCATAATGTACCTACAA+TGG | - | chr5.2:1140880-1140899 | None:intergenic | 30.0% | |
| TATCAGACAAGAATACGTTA+AGG | - | chr5.2:1140062-1140081 | None:intergenic | 30.0% | |
| TATCTAAATAGACTTGCAGA+TGG | + | chr5.2:1140120-1140139 | MS.gene21844:CDS | 30.0% | |
| TCTGCCAAATTACACATTTA+TGG | - | chr5.2:1142257-1142276 | None:intergenic | 30.0% | |
| TCTTCTTTCAATATTTGGAC+AGG | - | chr5.2:1141516-1141535 | None:intergenic | 30.0% | |
| TGTTTGGTAAACTACAAAAC+TGG | - | chr5.2:1142478-1142497 | None:intergenic | 30.0% | |
| TTTCTCTTTATGTAGCTGAT+TGG | + | chr5.2:1141129-1141148 | MS.gene21844:intron | 30.0% | |
| ! | AAATTGACGCATTTGTTTCT+GGG | + | chr5.2:1140935-1140954 | MS.gene21844:CDS | 30.0% |
| ! | ACTAGAATTGTGTTTGAGAT+TGG | + | chr5.2:1140268-1140287 | MS.gene21844:intron | 30.0% |
| ! | AGATAGAAATGTTAGTTTCC+GGG | - | chr5.2:1142785-1142804 | None:intergenic | 30.0% |
| !! | AAGTTTTGTATTCCTTGATG+CGG | + | chr5.2:1140002-1140021 | MS.gene21844:intron | 30.0% |
| !! | AATATGCACTTCTCTGAAAT+TGG | + | chr5.2:1141410-1141429 | MS.gene21844:intron | 30.0% |
| !! | AGTAGTATTTTGCCACTTAT+TGG | + | chr5.2:1141974-1141993 | MS.gene21844:intron | 30.0% |
| !! | ATATGCACTTCTCTGAAATT+GGG | + | chr5.2:1141411-1141430 | MS.gene21844:intron | 30.0% |
| !! | GTTAATGTTCCATTTTGACA+TGG | + | chr5.2:1143461-1143480 | MS.gene21844:intron | 30.0% |
| AAACTCATTTGTTCTATGGC+TGG | + | chr5.2:1140810-1140829 | MS.gene21844:intron | 35.0% | |
| AAATGAAAGGGTTCTCAAAC+TGG | - | chr5.2:1142006-1142025 | None:intergenic | 35.0% | |
| AAGCTTCTTGCTCTTAAAGA+AGG | + | chr5.2:1142306-1142325 | MS.gene21844:CDS | 35.0% | |
| AATTATGAGCTTGTATCCCT+TGG | - | chr5.2:1140604-1140623 | None:intergenic | 35.0% | |
| AGTCATGCCATCAATGAATT+CGG | + | chr5.2:1143049-1143068 | MS.gene21844:intron | 35.0% | |
| ATACTACTTCAACCAAGTCA+AGG | - | chr5.2:1141962-1141981 | None:intergenic | 35.0% | |
| ATCTAATCAGTTCCATTAGC+GGG | - | chr5.2:1143310-1143329 | None:intergenic | 35.0% | |
| ATGGAAGAGGATCTGATTAA+AGG | + | chr5.2:1141292-1141311 | MS.gene21844:intron | 35.0% | |
| ATTTGTGCTGTGTAGTTGAT+TGG | + | chr5.2:1140081-1140100 | MS.gene21844:intron | 35.0% | |
| CATCTAATCAGTTCCATTAG+CGG | - | chr5.2:1143311-1143330 | None:intergenic | 35.0% | |
| CCATAGAAAAAGCTATAAGC+TGG | + | chr5.2:1141465-1141484 | MS.gene21844:intron | 35.0% | |
| CTCTTGACTTTGTAAATGTG+TGG | + | chr5.2:1143209-1143228 | MS.gene21844:intron | 35.0% | |
| CTGCAATTAAGATAGCCAAA+AGG | + | chr5.2:1142552-1142571 | MS.gene21844:CDS | 35.0% | |
| GTGCATTCTATGAAATGTTG+TGG | + | chr5.2:1140446-1140465 | MS.gene21844:intron | 35.0% | |
| TAGGTACATTATGAAACCAC+CGG | + | chr5.2:1140883-1140902 | MS.gene21844:intron | 35.0% | |
| TATTGAATTCGAACTTTCGG+TGG | - | chr5.2:1143248-1143267 | None:intergenic | 35.0% | |
| TGATTATGTGCTTGTTTGGT+TGG | + | chr5.2:1140297-1140316 | MS.gene21844:intron | 35.0% | |
| TGGAAGAGGATCTGATTAAA+GGG | + | chr5.2:1141293-1141312 | MS.gene21844:intron | 35.0% | |
| TGTCTACAGTTTGATAAGGT+GGG | + | chr5.2:1141865-1141884 | MS.gene21844:intron | 35.0% | |
| TGTTGAAGTATGTAGGCATT+GGG | - | chr5.2:1140759-1140778 | None:intergenic | 35.0% | |
| TTCGTGATTATGTGCTTGTT+TGG | + | chr5.2:1140293-1140312 | MS.gene21844:intron | 35.0% | |
| TTGTCTACAGTTTGATAAGG+TGG | + | chr5.2:1141864-1141883 | MS.gene21844:intron | 35.0% | |
| TTGTTGAAGTATGTAGGCAT+TGG | - | chr5.2:1140760-1140779 | None:intergenic | 35.0% | |
| TTTAAGAGCAAGAAGCTTTG+CGG | - | chr5.2:1142304-1142323 | None:intergenic | 35.0% | |
| TTTGGCTATCTTAATTGCAG+CGG | - | chr5.2:1142552-1142571 | None:intergenic | 35.0% | |
| ! | GATAGAAATGTTAGTTTCCG+GGG | - | chr5.2:1142784-1142803 | None:intergenic | 35.0% |
| ! | GATTAGTCAAAGGATCAGTT+AGG | - | chr5.2:1141621-1141640 | None:intergenic | 35.0% |
| ! | GGTGTCGAGAAAAATTTACA+AGG | - | chr5.2:1141581-1141600 | None:intergenic | 35.0% |
| ! | TATATACCTTAGGATTGGCA+GGG | - | chr5.2:1140791-1140810 | None:intergenic | 35.0% |
| ! | TTATATACCTTAGGATTGGC+AGG | - | chr5.2:1140792-1140811 | None:intergenic | 35.0% |
| ! | TTTAAGATATTTCCCAGCAC+CGG | - | chr5.2:1140983-1141002 | None:intergenic | 35.0% |
| !! | ACTCTTAGCTGTTTCTACAT+AGG | - | chr5.2:1142351-1142370 | None:intergenic | 35.0% |
| !! | AGATTAACTTCTAAGACACC+AGG | - | chr5.2:1141711-1141730 | None:intergenic | 35.0% |
| !! | CCAGCTTATAGCTTTTTCTA+TGG | - | chr5.2:1141468-1141487 | None:intergenic | 35.0% |
| !! | GATTAACTTCTAAGACACCA+GGG | - | chr5.2:1141710-1141729 | None:intergenic | 35.0% |
| !! | TGGTTGGTAATGTGATATGA+GGG | + | chr5.2:1142420-1142439 | MS.gene21844:intron | 35.0% |
| !! | TTGGTTGGTAATGTGATATG+AGG | + | chr5.2:1142419-1142438 | MS.gene21844:intron | 35.0% |
| !!! | ATTAGCTTTTGGAGCTGAAT+TGG | + | chr5.2:1140665-1140684 | MS.gene21844:CDS | 35.0% |
| !!! | CAAAAGTGCTTTTAAGAGCA+AGG | - | chr5.2:1142115-1142134 | None:intergenic | 35.0% |
| !!! | CCTATCGCTATTTTTTAGCT+CGG | + | chr5.2:1140030-1140049 | MS.gene21844:intron | 35.0% |
| AACTGGAAATGGCCAATAAG+TGG | - | chr5.2:1141989-1142008 | None:intergenic | 40.0% | |
| AAGGGTTCTCAAACTGGAAA+TGG | - | chr5.2:1142000-1142019 | None:intergenic | 40.0% | |
| ACTCAAATAGCACAGAGGAT+AGG | - | chr5.2:1143521-1143540 | None:intergenic | 40.0% | |
| AGCTTGAAGTTGTTGGATCA+AGG | - | chr5.2:1143191-1143210 | None:intergenic | 40.0% | |
| AGGACATCCGAATTCATTGA+TGG | - | chr5.2:1143059-1143078 | None:intergenic | 40.0% | |
| AGTCAAGAGCTTGAAGTTGT+TGG | - | chr5.2:1143198-1143217 | None:intergenic | 40.0% | |
| ATAAGCTGGAAAGACTGTGT+TGG | + | chr5.2:1141479-1141498 | MS.gene21844:intron | 40.0% | |
| ATTGCTGATGCAGAAGAGAA+GGG | + | chr5.2:1140362-1140381 | MS.gene21844:CDS | 40.0% | |
| CAATAAAGAAATGCTGCAGG+TGG | + | chr5.2:1143263-1143282 | MS.gene21844:intron | 40.0% | |
| CATGCTCTAGTGTAAAAGAC+AGG | + | chr5.2:1140184-1140203 | MS.gene21844:CDS | 40.0% | |
| CCGAGCTAAAAAATAGCGAT+AGG | - | chr5.2:1140033-1140052 | None:intergenic | 40.0% | |
| CTTTATGTAGCTGATTGGTG+TGG | + | chr5.2:1141134-1141153 | MS.gene21844:intron | 40.0% | |
| CTTTCAAGACTCATTGAAGC+AGG | - | chr5.2:1140633-1140652 | None:intergenic | 40.0% | |
| CTTTCAATATTTGGACAGGC+AGG | - | chr5.2:1141512-1141531 | None:intergenic | 40.0% | |
| GGAAGAGGATCTGATTAAAG+GGG | + | chr5.2:1141294-1141313 | MS.gene21844:intron | 40.0% | |
| TAAGCTGGAAAGACTGTGTT+GGG | + | chr5.2:1141480-1141499 | MS.gene21844:intron | 40.0% | |
| TAAGGGATGTTCAAGGAGTT+TGG | + | chr5.2:1142739-1142758 | MS.gene21844:intron | 40.0% | |
| TAGGTCAACCGATCATGAAA+TGG | - | chr5.2:1141602-1141621 | None:intergenic | 40.0% | |
| TCAAAAAGCTGAAGAGCTGT+TGG | + | chr5.2:1140725-1140744 | MS.gene21844:CDS | 40.0% | |
| TCTCGACACCATTTCATGAT+CGG | + | chr5.2:1141591-1141610 | MS.gene21844:intron | 40.0% | |
| TGCTGCAAAACTGGAATTGA+TGG | + | chr5.2:1140158-1140177 | MS.gene21844:CDS | 40.0% | |
| TTAGCCAGTTCTTAAGCTAC+AGG | - | chr5.2:1143351-1143370 | None:intergenic | 40.0% | |
| TTGTAGGTGGGAATATCTTC+TGG | + | chr5.2:1142515-1142534 | MS.gene21844:intron | 40.0% | |
| TTTAAGAGCAAGGAGCAAAC+TGG | - | chr5.2:1142105-1142124 | None:intergenic | 40.0% | |
| ! | AAGGATCGGTGATTAGTCAA+AGG | - | chr5.2:1141631-1141650 | None:intergenic | 40.0% |
| ! | AGATATGGAAAGGCACAGAT+GGG | + | chr5.2:1140911-1140930 | MS.gene21844:CDS | 40.0% |
| ! | ATAAGCTTCCCAGCATTTTC+TGG | - | chr5.2:1142578-1142597 | None:intergenic | 40.0% |
| ! | ATTCCAGTTTTGCAGCAACT+CGG | - | chr5.2:1140155-1140174 | None:intergenic | 40.0% |
| ! | CTGTCTTTTACACTAGAGCA+TGG | - | chr5.2:1140186-1140205 | None:intergenic | 40.0% |
| ! | TGCTATTTGAGTCAGTGAGA+CGG | + | chr5.2:1143529-1143548 | MS.gene21844:CDS | 40.0% |
| !! | ACTTCTCTGAAATTGGGTCA+TGG | + | chr5.2:1141417-1141436 | MS.gene21844:intron | 40.0% |
| !! | GGTTGGTAATGTGATATGAG+GGG | + | chr5.2:1142421-1142440 | MS.gene21844:intron | 40.0% |
| !! | TACCACTTGTTGGTTCAATG+AGG | - | chr5.2:1140548-1140567 | None:intergenic | 40.0% |
| !! | TTTGTTTCTGGGATAGGTAC+TGG | + | chr5.2:1140946-1140965 | MS.gene21844:CDS | 40.0% |
| AAGAAATGCTGCAGGTGGTA+TGG | + | chr5.2:1143268-1143287 | MS.gene21844:intron | 45.0% | |
| ACAAGTGGTAACACTGGCAT+TGG | + | chr5.2:1140558-1140577 | MS.gene21844:CDS | 45.0% | |
| ACTGGAACTTTGCTCCTACT+CGG | - | chr5.2:1142087-1142106 | None:intergenic | 45.0% | |
| ATGCCAGTGTTACCACTTGT+TGG | - | chr5.2:1140558-1140577 | None:intergenic | 45.0% | |
| ATGTTCAAGGAGTTTGGAGG+AGG | + | chr5.2:1142745-1142764 | MS.gene21844:intron | 45.0% | |
| CAGGTCCTCACAAGATTCAA+GGG | + | chr5.2:1141667-1141686 | MS.gene21844:intron | 45.0% | |
| CATTCACAGCAGCAAAGGAT+CGG | - | chr5.2:1141645-1141664 | None:intergenic | 45.0% | |
| CCAAAAGGCCAGAAAATGCT+GGG | + | chr5.2:1142567-1142586 | MS.gene21844:CDS | 45.0% | |
| CCAATCCCTTGAATCTTGTG+AGG | - | chr5.2:1141675-1141694 | None:intergenic | 45.0% | |
| CCTCACAAGATTCAAGGGAT+TGG | + | chr5.2:1141672-1141691 | MS.gene21844:CDS | 45.0% | |
| CGATAGGAAAATCCGCATCA+AGG | - | chr5.2:1140017-1140036 | None:intergenic | 45.0% | |
| CTATGCTTATCCTCTTCCCT+AGG | + | chr5.2:1142055-1142074 | MS.gene21844:intron | 45.0% | |
| CTCCTTTCATTCCCTTTGCA+GGG | - | chr5.2:1140701-1140720 | None:intergenic | 45.0% | |
| CTGAACATTCACAGCAGCAA+AGG | - | chr5.2:1141650-1141669 | None:intergenic | 45.0% | |
| CTTTGCTGCTGTGAATGTTC+AGG | + | chr5.2:1141648-1141667 | MS.gene21844:intron | 45.0% | |
| GAACCAACAAGTGGTAACAC+TGG | + | chr5.2:1140552-1140571 | MS.gene21844:CDS | 45.0% | |
| GATTGCTGATGCAGAAGAGA+AGG | + | chr5.2:1140361-1140380 | MS.gene21844:CDS | 45.0% | |
| GCTATTTGAGTCAGTGAGAC+GGG | + | chr5.2:1143530-1143549 | MS.gene21844:CDS | 45.0% | |
| GTACCTTAAGAACCCGCTAA+TGG | + | chr5.2:1143295-1143314 | MS.gene21844:intron | 45.0% | |
| GTCCTCATTGAACCAACAAG+TGG | + | chr5.2:1140543-1140562 | MS.gene21844:CDS | 45.0% | |
| TCAGGTCCTCACAAGATTCA+AGG | + | chr5.2:1141666-1141685 | MS.gene21844:intron | 45.0% | |
| TCATTTGTTCTATGGCTGGC+AGG | + | chr5.2:1140814-1140833 | MS.gene21844:intron | 45.0% | |
| TCCTACTCGGAACTTTCCTA+GGG | - | chr5.2:1142074-1142093 | None:intergenic | 45.0% | |
| TCTGTGCCTTTCCATATCTC+TGG | - | chr5.2:1140910-1140929 | None:intergenic | 45.0% | |
| TGAAAACCCTGCCAATCCTA+AGG | + | chr5.2:1140782-1140801 | MS.gene21844:CDS | 45.0% | |
| TGGTCCTGTAGCTTAAGAAC+TGG | + | chr5.2:1143344-1143363 | MS.gene21844:intron | 45.0% | |
| TTGCTGATGCAGAAGAGAAG+GGG | + | chr5.2:1140363-1140382 | MS.gene21844:CDS | 45.0% | |
| ! | AAGATTCAAGGGATTGGTGC+TGG | + | chr5.2:1141678-1141697 | MS.gene21844:CDS | 45.0% |
| ! | GAGATATGGAAAGGCACAGA+TGG | + | chr5.2:1140910-1140929 | MS.gene21844:CDS | 45.0% |
| ! | TAGGTAGCTTGGTGAGCTAA+GGG | + | chr5.2:1142722-1142741 | MS.gene21844:intron | 45.0% |
| ! | TTCCAGTTTTGCAGCAACTC+GGG | - | chr5.2:1140154-1140173 | None:intergenic | 45.0% |
| !! | CACTGACTCAAATAGCACAG+AGG | - | chr5.2:1143526-1143545 | None:intergenic | 45.0% |
| !! | GACGCATTTGTTTCTGGGAT+AGG | + | chr5.2:1140940-1140959 | MS.gene21844:CDS | 45.0% |
| !! | GGTACTGGTGGTACAATAAC+CGG | + | chr5.2:1140961-1140980 | MS.gene21844:CDS | 45.0% |
| !! | GTTCCATTAGCGGGTTCTTA+AGG | - | chr5.2:1143301-1143320 | None:intergenic | 45.0% |
| !! | GTTCCATTTTGACATGGTGC+AGG | + | chr5.2:1143467-1143486 | MS.gene21844:intron | 45.0% |
| !! | GTTTTGACAGACCCTGCAAA+GGG | + | chr5.2:1140687-1140706 | MS.gene21844:CDS | 45.0% |
| !! | TGGCATTGGATTAGCCTTCA+TGG | + | chr5.2:1140572-1140591 | MS.gene21844:CDS | 45.0% |
| !! | TTTTTCCAAGCTTTGGCGAG+AGG | + | chr5.2:1143493-1143512 | MS.gene21844:CDS | 45.0% |
| !!! | CAGGTCGTTTTTCCAAGCTT+TGG | + | chr5.2:1143486-1143505 | MS.gene21844:intron | 45.0% |
| !!! | TTTAGTTAATTTTTTTTAAT+AGG | - | chr5.2:1142819-1142838 | None:intergenic | 5.0% |
| AAACCACCGGTCCAGAGATA+TGG | + | chr5.2:1140896-1140915 | MS.gene21844:CDS | 50.0% | |
| ACCGGTCCAGAGATATGGAA+AGG | + | chr5.2:1140901-1140920 | MS.gene21844:CDS | 50.0% | |
| AGTTTCCGGGGATGAAACCT+GGG | - | chr5.2:1142772-1142791 | None:intergenic | 50.0% | |
| ATGAAGAGCTAGTCCCACGT+AGG | + | chr5.2:1142703-1142722 | MS.gene21844:intron | 50.0% | |
| ATTCCACATAGTCGGCAGCT+TGG | + | chr5.2:1143089-1143108 | MS.gene21844:intron | 50.0% | |
| ATTTGAGTCAGTGAGACGGG+AGG | + | chr5.2:1143533-1143552 | MS.gene21844:CDS | 50.0% | |
| CAAGGTATACCAACCTGTCC+AGG | - | chr5.2:1140398-1140417 | None:intergenic | 50.0% | |
| CGACCTGCACCATGTCAAAA+TGG | - | chr5.2:1143473-1143492 | None:intergenic | 50.0% | |
| CGACTATGTGGAATCTCAGG+CGG | - | chr5.2:1143083-1143102 | None:intergenic | 50.0% | |
| CGCCTGAGATTCCACATAGT+CGG | + | chr5.2:1143081-1143100 | MS.gene21844:intron | 50.0% | |
| CTCCTACTCGGAACTTTCCT+AGG | - | chr5.2:1142075-1142094 | None:intergenic | 50.0% | |
| CTTATCACACCTGGACAGGT+TGG | + | chr5.2:1140386-1140405 | MS.gene21844:intron | 50.0% | |
| GACCCTGCAAAGGGAATGAA+AGG | + | chr5.2:1140696-1140715 | MS.gene21844:CDS | 50.0% | |
| GCCAAAAGGCCAGAAAATGC+TGG | + | chr5.2:1142566-1142585 | MS.gene21844:CDS | 50.0% | |
| GCCTTTCCATATCTCTGGAC+CGG | - | chr5.2:1140905-1140924 | None:intergenic | 50.0% | |
| GCTCCTTTCATTCCCTTTGC+AGG | - | chr5.2:1140702-1140721 | None:intergenic | 50.0% | |
| GGATCTGATTAAAGGGGCAG+AGG | + | chr5.2:1141300-1141319 | MS.gene21844:intron | 50.0% | |
| GGGATGTTCAAGGAGTTTGG+AGG | + | chr5.2:1142742-1142761 | MS.gene21844:intron | 50.0% | |
| GGTGAGCTAAGGGATGTTCA+AGG | + | chr5.2:1142732-1142751 | MS.gene21844:intron | 50.0% | |
| GTGGTACAATAACCGGTGCT+GGG | + | chr5.2:1140968-1140987 | MS.gene21844:CDS | 50.0% | |
| TAGTTTCCGGGGATGAAACC+TGG | - | chr5.2:1142773-1142792 | None:intergenic | 50.0% | |
| TATGTGGAATCTCAGGCGGT+AGG | - | chr5.2:1143079-1143098 | None:intergenic | 50.0% | |
| TCCCTAGGAAAGTTCCGAGT+AGG | + | chr5.2:1142070-1142089 | MS.gene21844:intron | 50.0% | |
| TCGGAACTTTCCTAGGGAAG+AGG | - | chr5.2:1142068-1142087 | None:intergenic | 50.0% | |
| TTTCCATATCTCTGGACCGG+TGG | - | chr5.2:1140902-1140921 | None:intergenic | 50.0% | |
| ! | GTAGGTAGCTTGGTGAGCTA+AGG | + | chr5.2:1142721-1142740 | MS.gene21844:intron | 50.0% |
| ! | TGCCGACTATGTGGAATCTC+AGG | - | chr5.2:1143086-1143105 | None:intergenic | 50.0% |
| !! | CCCAGCATTTTCTGGCCTTT+TGG | - | chr5.2:1142570-1142589 | None:intergenic | 50.0% |
| !! | GGTTTTGACAGACCCTGCAA+AGG | + | chr5.2:1140686-1140705 | MS.gene21844:CDS | 50.0% |
| !! | GTTTCTGGGATAGGTACTGG+TGG | + | chr5.2:1140949-1140968 | MS.gene21844:CDS | 50.0% |
| AGCTCACCAAGCTACCTACG+TGG | - | chr5.2:1142720-1142739 | None:intergenic | 55.0% | |
| AGGTACCTCTCGCCAAAGCT+TGG | - | chr5.2:1143501-1143520 | None:intergenic | 55.0% | |
| CTAGTCCCACGTAGGTAGCT+TGG | + | chr5.2:1142711-1142730 | MS.gene21844:intron | 55.0% | |
| GAGAAGGGGCTTATCACACC+TGG | + | chr5.2:1140377-1140396 | MS.gene21844:CDS | 55.0% | |
| GCTCACCAAGCTACCTACGT+GGG | - | chr5.2:1142719-1142738 | None:intergenic | 55.0% | |
| GCTGATTGGTGTGGAACCAG+TGG | + | chr5.2:1141143-1141162 | MS.gene21844:intron | 55.0% | |
| GGTGGTACAATAACCGGTGC+TGG | + | chr5.2:1140967-1140986 | MS.gene21844:CDS | 55.0% | |
| TCTATGGCTGGCAGGCACAA+TGG | + | chr5.2:1140822-1140841 | MS.gene21844:intron | 55.0% | |
| TGCCCGAGTTGCTGCAAAAC+TGG | + | chr5.2:1140149-1140168 | MS.gene21844:CDS | 55.0% | |
| TGGAGAGTCCAGTGCTCTCA+GGG | + | chr5.2:1141163-1141182 | MS.gene21844:CDS | 55.0% | |
| !! | ATTGGTGCTGGCTTTGTCCC+TGG | + | chr5.2:1141690-1141709 | MS.gene21844:CDS | 55.0% |
| AGCCTTCATGGCAGCAGCCA+AGG | + | chr5.2:1140584-1140603 | MS.gene21844:CDS | 60.0% | |
| AGGAGTTTGGAGGAGGTCCC+AGG | + | chr5.2:1142752-1142771 | MS.gene21844:intron | 60.0% | |
| AGTCGGCAGCTTGGAGCTGT+TGG | + | chr5.2:1143098-1143117 | MS.gene21844:intron | 60.0% | |
| GAGAGTCCAGTGCTCTCAGG+GGG | + | chr5.2:1141165-1141184 | MS.gene21844:CDS | 60.0% | |
| GAGGTCCCAGGTTTCATCCC+CGG | + | chr5.2:1142764-1142783 | MS.gene21844:intron | 60.0% | |
| GCCTTCATGGCAGCAGCCAA+GGG | + | chr5.2:1140585-1140604 | MS.gene21844:CDS | 60.0% | |
| GGAGAGTCCAGTGCTCTCAG+GGG | + | chr5.2:1141164-1141183 | MS.gene21844:CDS | 60.0% | |
| GGGGCTTATCACACCTGGAC+AGG | + | chr5.2:1140382-1140401 | MS.gene21844:CDS | 60.0% | |
| GTGCTCTCAGGGGGAAAACC+TGG | + | chr5.2:1141174-1141193 | MS.gene21844:CDS | 60.0% | |
| GTGGAGAGTCCAGTGCTCTC+AGG | + | chr5.2:1141162-1141181 | MS.gene21844:CDS | 60.0% | |
| TCCCTTGGCTGCTGCCATGA+AGG | - | chr5.2:1140589-1140608 | None:intergenic | 60.0% | |
| ! | GCTCCAAGCTGCCGACTATG+TGG | - | chr5.2:1143095-1143114 | None:intergenic | 60.0% |
| !! | GAGAGCACTGGACTCTCCAC+TGG | - | chr5.2:1141162-1141181 | None:intergenic | 60.0% |
| !! | GGTTTTCCCCCTGAGAGCAC+TGG | - | chr5.2:1141174-1141193 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 1139958 | 1143581 | 1139958 | ID=MS.gene21844 |
| chr5.2 | mRNA | 1139958 | 1143581 | 1139958 | ID=MS.gene21844.t1;Parent=MS.gene21844 |
| chr5.2 | exon | 1139958 | 1139999 | 1139958 | ID=MS.gene21844.t1.exon1;Parent=MS.gene21844.t1 |
| chr5.2 | CDS | 1139958 | 1139999 | 1139958 | ID=cds.MS.gene21844.t1;Parent=MS.gene21844.t1 |
| chr5.2 | exon | 1140096 | 1140205 | 1140096 | ID=MS.gene21844.t1.exon2;Parent=MS.gene21844.t1 |
| chr5.2 | CDS | 1140096 | 1140205 | 1140096 | ID=cds.MS.gene21844.t1;Parent=MS.gene21844.t1 |
| chr5.2 | exon | 1140346 | 1140403 | 1140346 | ID=MS.gene21844.t1.exon3;Parent=MS.gene21844.t1 |
| chr5.2 | CDS | 1140346 | 1140403 | 1140346 | ID=cds.MS.gene21844.t1;Parent=MS.gene21844.t1 |
| chr5.2 | exon | 1140540 | 1140803 | 1140540 | ID=MS.gene21844.t1.exon4;Parent=MS.gene21844.t1 |
| chr5.2 | CDS | 1140540 | 1140803 | 1140540 | ID=cds.MS.gene21844.t1;Parent=MS.gene21844.t1 |
| chr5.2 | exon | 1140886 | 1141023 | 1140886 | ID=MS.gene21844.t1.exon5;Parent=MS.gene21844.t1 |
| chr5.2 | CDS | 1140886 | 1141023 | 1140886 | ID=cds.MS.gene21844.t1;Parent=MS.gene21844.t1 |
| chr5.2 | exon | 1141144 | 1141195 | 1141144 | ID=MS.gene21844.t1.exon6;Parent=MS.gene21844.t1 |
| chr5.2 | CDS | 1141144 | 1141195 | 1141144 | ID=cds.MS.gene21844.t1;Parent=MS.gene21844.t1 |
| chr5.2 | exon | 1141670 | 1141749 | 1141670 | ID=MS.gene21844.t1.exon7;Parent=MS.gene21844.t1 |
| chr5.2 | CDS | 1141670 | 1141749 | 1141670 | ID=cds.MS.gene21844.t1;Parent=MS.gene21844.t1 |
| chr5.2 | exon | 1142276 | 1142335 | 1142276 | ID=MS.gene21844.t1.exon8;Parent=MS.gene21844.t1 |
| chr5.2 | CDS | 1142276 | 1142335 | 1142276 | ID=cds.MS.gene21844.t1;Parent=MS.gene21844.t1 |
| chr5.2 | exon | 1142521 | 1142601 | 1142521 | ID=MS.gene21844.t1.exon9;Parent=MS.gene21844.t1 |
| chr5.2 | CDS | 1142521 | 1142601 | 1142521 | ID=cds.MS.gene21844.t1;Parent=MS.gene21844.t1 |
| chr5.2 | exon | 1143489 | 1143581 | 1143489 | ID=MS.gene21844.t1.exon10;Parent=MS.gene21844.t1 |
| chr5.2 | CDS | 1143489 | 1143581 | 1143489 | ID=cds.MS.gene21844.t1;Parent=MS.gene21844.t1 |
| Gene Sequence |
| Protein sequence |
