Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22157.t1 | XP_003599808.2 | 76 | 279 | 61 | 3 | 1 | 274 | 1 | 278 | 3.80E-107 | 397.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22157.t1 | Q41160 | 53.2 | 263 | 116 | 6 | 10 | 270 | 10 | 267 | 3.5e-61 | 236.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22157.t1 | G7IXH3 | 76.0 | 279 | 61 | 3 | 1 | 274 | 1 | 278 | 2.7e-107 | 397.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene22157 | 0.825457 | 4.64E-54 | -1.69E-46 |
| MS.gene051439 | MS.gene22157 | 0.801493 | 8.77E-49 | -1.69E-46 |
| MS.gene055340 | MS.gene22157 | 0.812884 | 3.39E-51 | -1.69E-46 |
| MS.gene056590 | MS.gene22157 | 0.805702 | 1.18E-49 | -1.69E-46 |
| MS.gene056591 | MS.gene22157 | 0.804906 | 1.72E-49 | -1.69E-46 |
| MS.gene056694 | MS.gene22157 | 0.805546 | 1.27E-49 | -1.69E-46 |
| MS.gene058381 | MS.gene22157 | 0.801016 | 1.10E-48 | -1.69E-46 |
| MS.gene060087 | MS.gene22157 | 0.84125 | 5.32E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22157.t1 | MTR_3g047140 | 76.344 | 279 | 60 | 3 | 1 | 274 | 1 | 278 | 4.60e-145 | 408 |
| MS.gene22157.t1 | MTR_0163s0020 | 64.621 | 277 | 92 | 2 | 1 | 273 | 2 | 276 | 1.34e-110 | 321 |
| MS.gene22157.t1 | MTR_0684s0020 | 64.621 | 277 | 92 | 2 | 1 | 273 | 1 | 275 | 1.70e-110 | 320 |
| MS.gene22157.t1 | MTR_3g054170 | 54.545 | 242 | 105 | 3 | 17 | 257 | 17 | 254 | 3.11e-81 | 245 |
| MS.gene22157.t1 | MTR_3g054180 | 54.098 | 244 | 105 | 4 | 17 | 257 | 21 | 260 | 4.64e-79 | 240 |
| MS.gene22157.t1 | MTR_1g090973 | 49.810 | 263 | 123 | 5 | 1 | 257 | 1 | 260 | 4.27e-78 | 238 |
| MS.gene22157.t1 | MTR_3g054200 | 50.602 | 249 | 118 | 3 | 10 | 257 | 10 | 254 | 2.35e-73 | 225 |
| MS.gene22157.t1 | MTR_1g090943 | 48.679 | 265 | 127 | 7 | 10 | 271 | 15 | 273 | 3.28e-69 | 215 |
| MS.gene22157.t1 | MTR_1g090960 | 45.000 | 280 | 104 | 8 | 1 | 269 | 1 | 241 | 1.53e-63 | 199 |
| MS.gene22157.t1 | MTR_3g027280 | 48.239 | 284 | 123 | 14 | 1 | 267 | 1 | 277 | 5.15e-61 | 194 |
| MS.gene22157.t1 | MTR_1g090937 | 42.908 | 282 | 134 | 13 | 1 | 267 | 1 | 270 | 1.03e-50 | 167 |
| MS.gene22157.t1 | MTR_1g090957 | 45.000 | 280 | 120 | 15 | 1 | 264 | 1 | 262 | 5.53e-50 | 166 |
| MS.gene22157.t1 | MTR_1g090930 | 41.319 | 288 | 138 | 11 | 1 | 269 | 1 | 276 | 3.70e-48 | 162 |
| MS.gene22157.t1 | MTR_4g023810 | 41.736 | 242 | 129 | 7 | 26 | 263 | 27 | 260 | 1.64e-43 | 149 |
| MS.gene22157.t1 | MTR_8g068040 | 38.007 | 271 | 146 | 10 | 1 | 258 | 1 | 262 | 3.85e-42 | 145 |
| MS.gene22157.t1 | MTR_8g023510 | 40.755 | 265 | 143 | 10 | 1 | 257 | 1 | 259 | 5.92e-42 | 145 |
| MS.gene22157.t1 | MTR_8g068030 | 37.729 | 273 | 142 | 11 | 1 | 255 | 1 | 263 | 5.92e-41 | 142 |
| MS.gene22157.t1 | MTR_8g068050 | 37.594 | 266 | 141 | 8 | 9 | 259 | 20 | 275 | 3.09e-38 | 142 |
| MS.gene22157.t1 | MTR_5g031160 | 37.200 | 250 | 135 | 8 | 26 | 257 | 42 | 287 | 6.74e-34 | 124 |
| MS.gene22157.t1 | MTR_8g067940 | 35.531 | 273 | 153 | 9 | 3 | 255 | 10 | 279 | 1.19e-33 | 124 |
| MS.gene22157.t1 | MTR_4g093080 | 34.496 | 258 | 151 | 8 | 13 | 258 | 9 | 260 | 1.20e-33 | 129 |
| MS.gene22157.t1 | MTR_5g031090 | 34.413 | 247 | 140 | 8 | 30 | 257 | 32 | 275 | 1.70e-33 | 123 |
| MS.gene22157.t1 | MTR_8g067980 | 37.083 | 240 | 128 | 11 | 32 | 255 | 25 | 257 | 8.20e-33 | 121 |
| MS.gene22157.t1 | MTR_5g031120 | 36.992 | 246 | 132 | 8 | 31 | 257 | 38 | 279 | 1.22e-32 | 121 |
| MS.gene22157.t1 | MTR_5g031030 | 34.568 | 243 | 141 | 8 | 30 | 257 | 35 | 274 | 2.26e-32 | 120 |
| MS.gene22157.t1 | MTR_5g031140 | 38.115 | 244 | 131 | 9 | 31 | 257 | 46 | 286 | 4.98e-32 | 119 |
| MS.gene22157.t1 | MTR_8g067990 | 37.759 | 241 | 125 | 12 | 32 | 255 | 25 | 257 | 5.52e-32 | 119 |
| MS.gene22157.t1 | MTR_4g056320 | 35.971 | 278 | 127 | 12 | 2 | 270 | 6 | 241 | 1.12e-31 | 118 |
| MS.gene22157.t1 | MTR_5g031100 | 35.772 | 246 | 134 | 9 | 31 | 257 | 38 | 278 | 5.27e-30 | 114 |
| MS.gene22157.t1 | MTR_7g115740 | 34.335 | 233 | 124 | 11 | 46 | 258 | 38 | 261 | 8.03e-30 | 118 |
| MS.gene22157.t1 | MTR_8g067735 | 33.333 | 249 | 151 | 8 | 31 | 267 | 43 | 288 | 8.62e-30 | 118 |
| MS.gene22157.t1 | MTR_4g093110 | 34.799 | 273 | 133 | 13 | 10 | 257 | 12 | 264 | 2.09e-28 | 114 |
| MS.gene22157.t1 | MTR_7g116130 | 33.712 | 264 | 140 | 13 | 19 | 260 | 14 | 264 | 1.46e-27 | 112 |
| MS.gene22157.t1 | MTR_4g093140 | 33.456 | 272 | 138 | 11 | 10 | 257 | 12 | 264 | 1.87e-27 | 111 |
| MS.gene22157.t1 | MTR_4g093040 | 32.794 | 247 | 144 | 9 | 11 | 240 | 13 | 254 | 2.39e-27 | 111 |
| MS.gene22157.t1 | MTR_8g067960 | 37.168 | 226 | 120 | 10 | 46 | 257 | 24 | 241 | 4.68e-26 | 102 |
| MS.gene22157.t1 | MTR_4g093040 | 39.306 | 173 | 88 | 7 | 82 | 240 | 3 | 172 | 7.59e-26 | 106 |
| MS.gene22157.t1 | MTR_1g014240 | 35.407 | 209 | 118 | 6 | 71 | 265 | 78 | 283 | 9.00e-25 | 103 |
| MS.gene22157.t1 | MTR_8g067630 | 33.040 | 227 | 131 | 8 | 31 | 243 | 30 | 249 | 1.10e-23 | 100 |
| MS.gene22157.t1 | MTR_8g067930 | 30.522 | 249 | 158 | 7 | 31 | 267 | 24 | 269 | 1.54e-23 | 100 |
| MS.gene22157.t1 | MTR_4g093070 | 34.328 | 268 | 143 | 9 | 10 | 257 | 12 | 266 | 1.90e-23 | 100 |
| MS.gene22157.t1 | MTR_8g067720 | 30.153 | 262 | 160 | 9 | 11 | 260 | 10 | 260 | 2.98e-23 | 99.4 |
| MS.gene22157.t1 | MTR_3g463370 | 31.618 | 272 | 130 | 9 | 9 | 269 | 8 | 234 | 9.66e-23 | 94.0 |
| MS.gene22157.t1 | MTR_8g067690 | 29.412 | 238 | 154 | 6 | 31 | 257 | 60 | 294 | 8.51e-21 | 92.0 |
| MS.gene22157.t1 | MTR_4g093050 | 30.980 | 255 | 155 | 10 | 16 | 253 | 12 | 262 | 7.72e-19 | 86.3 |
| MS.gene22157.t1 | MTR_5g025020 | 33.690 | 187 | 103 | 7 | 72 | 240 | 88 | 271 | 8.06e-19 | 86.3 |
| MS.gene22157.t1 | MTR_7g063010 | 30.544 | 239 | 127 | 11 | 42 | 254 | 32 | 257 | 9.59e-16 | 77.4 |
| MS.gene22157.t1 | MTR_1g048360 | 28.458 | 253 | 162 | 6 | 15 | 256 | 17 | 261 | 1.59e-15 | 76.6 |
| MS.gene22157.t1 | MTR_5g077100 | 32.273 | 220 | 129 | 7 | 50 | 259 | 45 | 254 | 2.08e-15 | 76.3 |
| MS.gene22157.t1 | MTR_2g090410 | 34.694 | 147 | 85 | 6 | 46 | 186 | 34 | 175 | 5.53e-14 | 72.4 |
| MS.gene22157.t1 | MTR_7g115740 | 32.593 | 135 | 70 | 7 | 46 | 167 | 38 | 164 | 1.07e-13 | 71.2 |
| MS.gene22157.t1 | MTR_7g062940 | 29.167 | 216 | 127 | 9 | 59 | 254 | 47 | 256 | 2.27e-13 | 70.1 |
| MS.gene22157.t1 | MTR_2g090250 | 26.872 | 227 | 148 | 5 | 44 | 253 | 34 | 259 | 4.91e-13 | 69.3 |
| MS.gene22157.t1 | MTR_3g068025 | 28.346 | 254 | 137 | 10 | 33 | 254 | 28 | 268 | 1.10e-12 | 68.2 |
| MS.gene22157.t1 | MTR_5g068770 | 27.570 | 214 | 132 | 7 | 72 | 267 | 81 | 289 | 1.47e-12 | 67.8 |
| MS.gene22157.t1 | MTR_8g068050 | 28.743 | 167 | 105 | 4 | 9 | 170 | 20 | 177 | 4.47e-11 | 63.2 |
| MS.gene22157.t1 | MTR_7g062890 | 30.244 | 205 | 116 | 9 | 72 | 254 | 58 | 257 | 4.51e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22157.t1 | AT5G10530 | 35.185 | 270 | 142 | 14 | 6 | 258 | 2 | 255 | 1.24e-24 | 103 |
| MS.gene22157.t1 | AT5G65600 | 34.211 | 190 | 106 | 7 | 71 | 243 | 76 | 263 | 7.14e-20 | 89.7 |
| MS.gene22157.t1 | AT5G55830 | 30.258 | 271 | 160 | 11 | 6 | 255 | 4 | 266 | 1.54e-17 | 82.8 |
| MS.gene22157.t1 | AT5G03140 | 29.245 | 212 | 135 | 6 | 50 | 251 | 51 | 257 | 2.40e-15 | 76.3 |
| MS.gene22157.t1 | AT5G06740 | 28.571 | 259 | 155 | 13 | 18 | 256 | 23 | 271 | 6.96e-14 | 71.6 |
| MS.gene22157.t1 | AT5G06740 | 28.571 | 259 | 155 | 13 | 18 | 256 | 11 | 259 | 7.31e-14 | 71.6 |
| MS.gene22157.t1 | AT4G29050 | 27.363 | 201 | 127 | 5 | 72 | 254 | 60 | 259 | 2.78e-13 | 70.1 |
| MS.gene22157.t1 | AT4G29050 | 27.363 | 201 | 127 | 5 | 72 | 254 | 74 | 273 | 3.17e-13 | 69.7 |
| MS.gene22157.t1 | AT3G55550 | 29.583 | 240 | 142 | 9 | 34 | 253 | 26 | 258 | 6.17e-13 | 68.9 |
| MS.gene22157.t1 | AT4G02420 | 33.824 | 204 | 105 | 11 | 72 | 253 | 65 | 260 | 1.50e-12 | 67.8 |
| MS.gene22157.t1 | AT1G53080 | 29.258 | 229 | 129 | 10 | 59 | 258 | 57 | 281 | 5.13e-11 | 62.4 |
| MS.gene22157.t1 | AT4G04960 | 33.775 | 151 | 90 | 4 | 46 | 190 | 35 | 181 | 8.23e-11 | 62.4 |
Find 51 sgRNAs with CRISPR-Local
Find 59 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACCAATGCTAACTGTTTC+TGG | 0.178047 | 3.4:-41885518 | None:intergenic |
| AGATTTGGAATTACACTATT+TGG | 0.215421 | 3.4:-41885197 | None:intergenic |
| ATTAACCCTTATACGATTAT+AGG | 0.243083 | 3.4:+41885032 | MS.gene22157:CDS |
| CCATCTGTGTTGTTAAGATT+TGG | 0.245140 | 3.4:-41885212 | None:intergenic |
| GCACGACCTATAATCGTATA+AGG | 0.280994 | 3.4:-41885038 | None:intergenic |
| GATCCTAACAATGCACATAT+TGG | 0.297717 | 3.4:+41885317 | MS.gene22157:CDS |
| TTGATAATTATCACAATGAT+TGG | 0.305021 | 3.4:+41885294 | MS.gene22157:CDS |
| TCAAGGGAATGCTGTCATTC+AGG | 0.316108 | 3.4:+41884983 | MS.gene22157:CDS |
| ACAGTTAGCATTGGTCTATC+TGG | 0.319313 | 3.4:+41885524 | MS.gene22157:CDS |
| ATTCAACACCCGTTCCCATT+TGG | 0.342088 | 3.4:+41885066 | MS.gene22157:CDS |
| CAACACAGATGGTGGAGATC+TGG | 0.350959 | 3.4:+41885223 | MS.gene22157:CDS |
| GGGAACGGGTGTTGAATATA+AGG | 0.357167 | 3.4:-41885060 | None:intergenic |
| TTCAACACCCGTTCCCATTT+GGG | 0.360630 | 3.4:+41885067 | MS.gene22157:CDS |
| GAAACTCACTTGGAGCTTAC+TGG | 0.370616 | 3.4:+41885005 | MS.gene22157:CDS |
| CCCCATGGGATTCACAAAAC+GGG | 0.386898 | 3.4:+41885375 | MS.gene22157:CDS |
| TGAATATGACTAACAGAATC+TGG | 0.399885 | 3.4:-41884860 | None:intergenic |
| ACTGCTTTCAATCGATTTGT+TGG | 0.405940 | 3.4:+41885263 | MS.gene22157:CDS |
| ATCCTAACAATGCACATATT+GGG | 0.411998 | 3.4:+41885318 | MS.gene22157:CDS |
| CCCATTTGGGATAGTGCAAC+TGG | 0.412436 | 3.4:+41885080 | MS.gene22157:CDS |
| GCCAGTTGCACTATCCCAAA+TGG | 0.414802 | 3.4:-41885081 | None:intergenic |
| GACTTAGCTGATTACATCTC+TGG | 0.418401 | 3.4:+41884942 | MS.gene22157:CDS |
| ACTAACAGAATCTGGTTAGT+TGG | 0.431026 | 3.4:-41884852 | None:intergenic |
| GAATGACAGCATTCCCTTGA+AGG | 0.432002 | 3.4:-41884980 | None:intergenic |
| TCCCCATGGGATTCACAAAA+CGG | 0.443828 | 3.4:+41885374 | MS.gene22157:CDS |
| TGATAATTATCACAATGATT+GGG | 0.445401 | 3.4:+41885295 | MS.gene22157:CDS |
| ATCCCAATATGTGCATTGTT+AGG | 0.450564 | 3.4:-41885320 | None:intergenic |
| GACCAATGCTAACTGTTTCT+GGG | 0.454186 | 3.4:-41885517 | None:intergenic |
| TGAATCCCATGGGGATGTCT+TGG | 0.462545 | 3.4:-41885366 | None:intergenic |
| GTTTCTCTCATTGACGAGAA+TGG | 0.472278 | 3.4:+41885449 | MS.gene22157:CDS |
| CTCAGTTACTAGCAAGAGAA+AGG | 0.473501 | 3.4:-41884889 | None:intergenic |
| GCACTATCCCAAATGGGAAC+GGG | 0.488710 | 3.4:-41885074 | None:intergenic |
| AACACAGATGGTGGAGATCT+GGG | 0.502642 | 3.4:+41885224 | MS.gene22157:CDS |
| CACGACCTATAATCGTATAA+GGG | 0.505615 | 3.4:-41885037 | None:intergenic |
| TTTGGAATTACACTATTTGG+TGG | 0.521911 | 3.4:-41885194 | None:intergenic |
| CCAGTTGCACTATCCCAAAT+GGG | 0.537384 | 3.4:-41885080 | None:intergenic |
| TGCACTATCCCAAATGGGAA+CGG | 0.540036 | 3.4:-41885075 | None:intergenic |
| AATGACAGCATTCCCTTGAA+GGG | 0.551329 | 3.4:-41884979 | None:intergenic |
| GGTAGTTATCCACGAGCTGA+TGG | 0.555952 | 3.4:+41885152 | MS.gene22157:CDS |
| CTCCCAGAAACAGTTAGCAT+TGG | 0.565328 | 3.4:+41885515 | MS.gene22157:CDS |
| CCAAATCTTAACAACACAGA+TGG | 0.577172 | 3.4:+41885212 | MS.gene22157:CDS |
| AATCTTAACAACACAGATGG+TGG | 0.587455 | 3.4:+41885215 | MS.gene22157:CDS |
| TGTCATTCAGGAAACTCACT+TGG | 0.593945 | 3.4:+41884995 | MS.gene22157:CDS |
| CAAATCAACGACTTGAGCAA+CGG | 0.597604 | 3.4:-41885483 | None:intergenic |
| TTCATCCAAGACATCCCCAT+GGG | 0.607724 | 3.4:+41885361 | MS.gene22157:CDS |
| AAGATAAGACCATCAGCTCG+TGG | 0.612801 | 3.4:-41885161 | None:intergenic |
| GATGTAATCAGCTAAGTCGA+AGG | 0.627754 | 3.4:-41884937 | None:intergenic |
| AAATATATGTCATTGAAACA+TGG | 0.630792 | 3.4:+41885570 | MS.gene22157:CDS |
| CCCATGGGATTCACAAAACG+GGG | 0.631871 | 3.4:+41885376 | MS.gene22157:CDS |
| AGTATGATTTATGTTCTCTG+AGG | 0.647177 | 3.4:-41885633 | None:intergenic |
| TTTCATCCAAGACATCCCCA+TGG | 0.656398 | 3.4:+41885360 | MS.gene22157:CDS |
| GCTCGTGGATAACTACCGAA+CGG | 0.706851 | 3.4:-41885146 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATGTCATTGAAACA+TGG | + | chr3.4:41885570-41885589 | MS.gene22157:CDS | 20.0% |
| !! | TGATAATTATCACAATGATT+GGG | + | chr3.4:41885295-41885314 | MS.gene22157:CDS | 20.0% |
| !!! | TTGATAATTATCACAATGAT+TGG | + | chr3.4:41885294-41885313 | MS.gene22157:CDS | 20.0% |
| ! | AAAAAACTTTAACCCTTCAA+GGG | + | chr3.4:41884967-41884986 | MS.gene22157:CDS | 25.0% |
| ! | ATTAACCCTTATACGATTAT+AGG | + | chr3.4:41885032-41885051 | MS.gene22157:CDS | 25.0% |
| !! | AGATTTGGAATTACACTATT+TGG | - | chr3.4:41885200-41885219 | None:intergenic | 25.0% |
| AGTATGATTTATGTTCTCTG+AGG | - | chr3.4:41885636-41885655 | None:intergenic | 30.0% | |
| ATCCTAACAATGCACATATT+GGG | + | chr3.4:41885318-41885337 | MS.gene22157:CDS | 30.0% | |
| GAAAAAACTTTAACCCTTCA+AGG | + | chr3.4:41884966-41884985 | MS.gene22157:CDS | 30.0% | |
| TGAATATGACTAACAGAATC+TGG | - | chr3.4:41884863-41884882 | None:intergenic | 30.0% | |
| ! | TTTGGAATTACACTATTTGG+TGG | - | chr3.4:41885197-41885216 | None:intergenic | 30.0% |
| AATCTTAACAACACAGATGG+TGG | + | chr3.4:41885215-41885234 | MS.gene22157:CDS | 35.0% | |
| ACTAACAGAATCTGGTTAGT+TGG | - | chr3.4:41884855-41884874 | None:intergenic | 35.0% | |
| ATCCCAATATGTGCATTGTT+AGG | - | chr3.4:41885323-41885342 | None:intergenic | 35.0% | |
| CACGACCTATAATCGTATAA+GGG | - | chr3.4:41885040-41885059 | None:intergenic | 35.0% | |
| CCAAATCTTAACAACACAGA+TGG | + | chr3.4:41885212-41885231 | MS.gene22157:CDS | 35.0% | |
| GATCCTAACAATGCACATAT+TGG | + | chr3.4:41885317-41885336 | MS.gene22157:CDS | 35.0% | |
| ! | CCATCTGTGTTGTTAAGATT+TGG | - | chr3.4:41885215-41885234 | None:intergenic | 35.0% |
| !! | ACTGCTTTCAATCGATTTGT+TGG | + | chr3.4:41885263-41885282 | MS.gene22157:CDS | 35.0% |
| AATGACAGCATTCCCTTGAA+GGG | - | chr3.4:41884982-41885001 | None:intergenic | 40.0% | |
| AGACCAATGCTAACTGTTTC+TGG | - | chr3.4:41885521-41885540 | None:intergenic | 40.0% | |
| CAAATCAACGACTTGAGCAA+CGG | - | chr3.4:41885486-41885505 | None:intergenic | 40.0% | |
| CTCAGTTACTAGCAAGAGAA+AGG | - | chr3.4:41884892-41884911 | None:intergenic | 40.0% | |
| GACTTAGCTGATTACATCTC+TGG | + | chr3.4:41884942-41884961 | MS.gene22157:CDS | 40.0% | |
| GATGTAATCAGCTAAGTCGA+AGG | - | chr3.4:41884940-41884959 | None:intergenic | 40.0% | |
| GCACGACCTATAATCGTATA+AGG | - | chr3.4:41885041-41885060 | None:intergenic | 40.0% | |
| GTTTCTCTCATTGACGAGAA+TGG | + | chr3.4:41885449-41885468 | MS.gene22157:CDS | 40.0% | |
| TGTCATTCAGGAAACTCACT+TGG | + | chr3.4:41884995-41885014 | MS.gene22157:CDS | 40.0% | |
| ! | GACCAATGCTAACTGTTTCT+GGG | - | chr3.4:41885520-41885539 | None:intergenic | 40.0% |
| !! | ACAGTTAGCATTGGTCTATC+TGG | + | chr3.4:41885524-41885543 | MS.gene22157:CDS | 40.0% |
| !! | TCTTTTTCTCTTGTGCCGTT+CGG | + | chr3.4:41885131-41885150 | MS.gene22157:CDS | 40.0% |
| !! | TTGACGTTTTTCAACTGACG+TGG | - | chr3.4:41885552-41885571 | None:intergenic | 40.0% |
| AAGATAAGACCATCAGCTCG+TGG | - | chr3.4:41885164-41885183 | None:intergenic | 45.0% | |
| ATTCAACACCCGTTCCCATT+TGG | + | chr3.4:41885066-41885085 | MS.gene22157:CDS | 45.0% | |
| CCAGTTGCACTATCCCAAAT+GGG | - | chr3.4:41885083-41885102 | None:intergenic | 45.0% | |
| CGGCACAAGAGAAAAAGAGA+AGG | - | chr3.4:41885129-41885148 | None:intergenic | 45.0% | |
| CTCCCAGAAACAGTTAGCAT+TGG | + | chr3.4:41885515-41885534 | MS.gene22157:CDS | 45.0% | |
| GAAACTCACTTGGAGCTTAC+TGG | + | chr3.4:41885005-41885024 | MS.gene22157:CDS | 45.0% | |
| GAATGACAGCATTCCCTTGA+AGG | - | chr3.4:41884983-41885002 | None:intergenic | 45.0% | |
| TCAAGGGAATGCTGTCATTC+AGG | + | chr3.4:41884983-41885002 | MS.gene22157:CDS | 45.0% | |
| TCCCCATGGGATTCACAAAA+CGG | + | chr3.4:41885374-41885393 | MS.gene22157:CDS | 45.0% | |
| TGCACTATCCCAAATGGGAA+CGG | - | chr3.4:41885078-41885097 | None:intergenic | 45.0% | |
| TTCAACACCCGTTCCCATTT+GGG | + | chr3.4:41885067-41885086 | MS.gene22157:CDS | 45.0% | |
| TTCATCCAAGACATCCCCAT+GGG | + | chr3.4:41885361-41885380 | MS.gene22157:CDS | 45.0% | |
| TTTCATCCAAGACATCCCCA+TGG | + | chr3.4:41885360-41885379 | MS.gene22157:CDS | 45.0% | |
| !! | AACACAGATGGTGGAGATCT+GGG | + | chr3.4:41885224-41885243 | MS.gene22157:CDS | 45.0% |
| !! | GGGAACGGGTGTTGAATATA+AGG | - | chr3.4:41885063-41885082 | None:intergenic | 45.0% |
| CCCATGGGATTCACAAAACG+GGG | + | chr3.4:41885376-41885395 | MS.gene22157:CDS | 50.0% | |
| CCCCATGGGATTCACAAAAC+GGG | + | chr3.4:41885375-41885394 | MS.gene22157:CDS | 50.0% | |
| GCACTATCCCAAATGGGAAC+GGG | - | chr3.4:41885077-41885096 | None:intergenic | 50.0% | |
| GCCAGTTGCACTATCCCAAA+TGG | - | chr3.4:41885084-41885103 | None:intergenic | 50.0% | |
| GCTCGTGGATAACTACCGAA+CGG | - | chr3.4:41885149-41885168 | None:intergenic | 50.0% | |
| GGTAGTTATCCACGAGCTGA+TGG | + | chr3.4:41885152-41885171 | MS.gene22157:CDS | 50.0% | |
| TGAATCCCATGGGGATGTCT+TGG | - | chr3.4:41885369-41885388 | None:intergenic | 50.0% | |
| ! | ACCCCGTTTTGTGAATCCCA+TGG | - | chr3.4:41885380-41885399 | None:intergenic | 50.0% |
| ! | CCCATTTGGGATAGTGCAAC+TGG | + | chr3.4:41885080-41885099 | MS.gene22157:CDS | 50.0% |
| ! | CCCCGTTTTGTGAATCCCAT+GGG | - | chr3.4:41885379-41885398 | None:intergenic | 50.0% |
| ! | CCCGTTTTGTGAATCCCATG+GGG | - | chr3.4:41885378-41885397 | None:intergenic | 50.0% |
| !! | CAACACAGATGGTGGAGATC+TGG | + | chr3.4:41885223-41885242 | MS.gene22157:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 41884840 | 41885664 | 41884840 | ID=MS.gene22157 |
| chr3.4 | mRNA | 41884840 | 41885664 | 41884840 | ID=MS.gene22157.t1;Parent=MS.gene22157 |
| chr3.4 | exon | 41884840 | 41885664 | 41884840 | ID=MS.gene22157.t1.exon1;Parent=MS.gene22157.t1 |
| chr3.4 | CDS | 41884840 | 41885664 | 41884840 | ID=cds.MS.gene22157.t1;Parent=MS.gene22157.t1 |
| Gene Sequence |
| Protein sequence |
