AlfalfaGEDB | MS.gene058381

M. sativa cultivar XinJiangDaYe / MS.gene058381

KEGG: -
GO: GO:0006950 GO:0006952 GO:0008150 GO:0050896
PFAM: PF00407.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058381.t1	XP_013445244.1	92.1	152	12	0	1	152	1	152	9.30E-79	302.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058381.t1	Q9SSK5	34.0	150	96	3	3	150	7	155	8.9e-22	104.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058381.t1	A0A072U0G0	92.1	152	12	0	1	152	1	152	6.7e-79	302.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04932	MS.gene058381	0.806905	6.56E-50	-1.69E-46
MS.gene049549	MS.gene058381	0.81337	2.65E-51	-1.69E-46
MS.gene052211	MS.gene058381	0.817359	3.44E-52	-1.69E-46
MS.gene05240	MS.gene058381	0.817838	2.68E-52	-1.69E-46
MS.gene054146	MS.gene058381	0.804308	2.30E-49	-1.69E-46
MS.gene054277	MS.gene058381	0.825336	4.95E-54	-1.69E-46
MS.gene054742	MS.gene058381	0.812091	5.05E-51	-1.69E-46
MS.gene056590	MS.gene058381	0.806622	7.52E-50	-1.69E-46
MS.gene056591	MS.gene058381	0.805131	1.55E-49	-1.69E-46
MS.gene056697	MS.gene058381	0.810482	1.13E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058381.t1	MTR_8g045555	92.105	152	12	0	1	152	1	152	1.47e-103	293
MS.gene058381.t1	MTR_8g045520	72.848	151	41	0	1	151	1	151	9.60e-85	245
MS.gene058381.t1	MTR_8g045570	71.053	152	44	0	1	152	1	152	8.48e-82	238
MS.gene058381.t1	MTR_8g045490	71.711	152	43	0	1	152	1	152	2.25e-81	237
MS.gene058381.t1	MTR_8g045400	69.737	152	45	1	1	152	1	151	3.13e-78	229
MS.gene058381.t1	MTR_8g045695	67.763	152	48	1	1	152	1	151	6.66e-77	226
MS.gene058381.t1	MTR_8g045300	65.563	151	52	0	1	151	1	151	1.67e-76	224
MS.gene058381.t1	MTR_8g045735	65.132	152	52	1	1	152	1	151	1.34e-73	217
MS.gene058381.t1	MTR_8g045665	65.132	152	52	1	1	152	1	151	3.91e-73	216
MS.gene058381.t1	MTR_8g045640	65.132	152	52	1	1	152	1	151	2.14e-72	214

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058381.t1	AT1G70890	34.000	150	96	3	3	150	7	155	3.07e-27	100
MS.gene058381.t1	AT5G28010	34.000	150	96	3	3	150	15	163	1.20e-26	98.6
MS.gene058381.t1	AT5G28010	34.000	150	96	3	3	150	15	163	1.20e-26	98.6
MS.gene058381.t1	AT1G70840	32.667	150	98	3	3	150	20	168	1.46e-26	98.6
MS.gene058381.t1	AT1G70830	34.667	150	95	3	3	150	22	170	2.01e-26	98.2
MS.gene058381.t1	AT1G70830	34.667	150	95	3	3	150	22	170	3.46e-26	98.6
MS.gene058381.t1	AT1G70830	34.667	150	95	3	3	150	22	170	1.28e-25	98.2
MS.gene058381.t1	AT1G70830	34.667	150	95	3	3	150	22	170	4.19e-25	98.6
MS.gene058381.t1	AT1G70830	33.333	150	97	3	3	150	184	332	2.10e-23	94.0
MS.gene058381.t1	AT1G70850	32.667	150	98	3	3	150	9	157	4.39e-24	94.0

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Find 29 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTGGACTTATGTCAT+AGG	0.403651	3.2:+2633256	MS.gene058381:CDS
AAACTCACTTACAAGCTCTT+CGG	0.512951	3.2:+2634711	MS.gene058381:CDS
AAGCTCTTCGGTGGAGATAT+TGG	0.245046	3.2:+2634723	MS.gene058381:CDS
ACACTGATACGGTTAAACAT+TGG	0.605669	3.2:+2633242	MS.gene058381:CDS
ACGTAGTCCATCCAGCCATT+AGG	0.444330	3.2:-2634858	None:intergenic
AGATATTGGGGAGAACTATA+AGG	0.448937	3.2:+2634737	MS.gene058381:CDS
AGCTACATCAAGGGGATGAC+TGG	0.453220	3.2:+2633215	MS.gene058381:CDS
AGCTCTTCGGTGGAGATATT+GGG	0.329670	3.2:+2634724	MS.gene058381:CDS
AGTCCATCCAGCCATTAGGA+GGG	0.659406	3.2:-2634854	None:intergenic
ATATTCAATTGTCCATTTGA+TGG	0.352752	3.2:-2634808	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAACTGGTACAAAACT+TGG	+	chr3.2:2634454-2634473	MS.gene058381:intron	30.0%
AAACATTGGACTTATGTCAT+AGG	+	chr3.2:2633256-2633275	MS.gene058381:CDS	30.0%
AAACTTAGAGATCCAACTAA+GGG	-	chr3.2:2634259-2634278	None:intergenic	30.0%
ACAAGTTAACATTTCCCTTA+GGG	+	chr3.2:2633806-2633825	MS.gene058381:intron	30.0%
GTGAATAAGATTTGCAGAAT+CGG	+	chr3.2:2634405-2634424	MS.gene058381:intron	30.0%
TAAACTTAGAGATCCAACTA+AGG	-	chr3.2:2634260-2634279	None:intergenic	30.0%
TCTTAAGTGTTACACTTTGT+GGG	-	chr3.2:2634025-2634044	None:intergenic	30.0%
TGAATATGAGAAGATCAATG+AGG	+	chr3.2:2634824-2634843	MS.gene058381:CDS	30.0%
TTTCATGAACTCTTTCACAA+TGG	-	chr3.2:2633192-2633211	None:intergenic	30.0%
AAACTCACTTACAAGCTCTT+CGG	+	chr3.2:2634711-2634730	MS.gene058381:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	2633091	2634926	2633091	ID=MS.gene058381
chr3.2	mRNA	2633091	2634926	2633091	ID=MS.gene058381.t1;Parent=MS.gene058381
chr3.2	exon	2633091	2633277	2633091	ID=MS.gene058381.t1.exon1;Parent=MS.gene058381.t1
chr3.2	CDS	2633091	2633277	2633091	ID=cds.MS.gene058381.t1;Parent=MS.gene058381.t1
chr3.2	exon	2634655	2634926	2634655	ID=MS.gene058381.t1.exon2;Parent=MS.gene058381.t1
chr3.2	CDS	2634655	2634926	2634655	ID=cds.MS.gene058381.t1;Parent=MS.gene058381.t1

Gene Sequence

>MS.gene058381

ATGGTGCTCAATGGTAAACTTAGTACTGAACTTGGGATCAAAGCATCTGTTGACAAGTTCTACAATTTCTTTGCAACACAACTTCACGACATGCAAATCCATTGTGAAAGAGTTCATGAAACCAAGCTACATCAAGGGGATGACTGGCATCACACTGATACGGTTAAACATTGGACTTATGTCATAGGTAATCATGTTTCTAACAATTAACTTTTAATTGATTATAAAAAATAAGTAAATATGATATCAACATAAATTTTGTTTCTCCTAAAAATTTTTAAATTCAATTTATAATTAAATATTCTATTAACGTTTGAATTTAGAAATTATTTATTTACAAAGACAAATATCACAATTTTCAATATATTAAATACACTAGTTTTTATAAAAAATATTCTAATTAAGGTCTTTAAGGAGTACTCAAGAGGCATCAGTTAACCTATCCCAAAATGATAAAATTAGAAAGCTTTTACATGTTCTCTTGTTGGCCTCTACGTTTACTTACTATCAAATAAATCCTTTTATTTTAACAATTTACGTACTTTATTAGAGCAGTGTTAACTTGTGTCTTTAGGGCACATGTTAAAAACTTAAAAAATAAATATTCTCTAAAATTTTGTGCATTTAATTGTTTATAAAGTTAAAGATTAAATGCAATGCACACATTTCAATAAATTATTTCTATATTTGAATCATTACCTTGTGTCTTGAGGGGACAAGTTAACATTTCCCTTAGGGAAAATTCTATGGTGAAGTCATGAGAATGACTTTTTTGGTGAAGTTATCACTATAACATCAAAAATGTAATGAGTAACACCCCACTATTTGTACAATGGCATCAAAAGTTTGGTCCTCATAGTATCATCAATTCATCAGATTAACAAGACTACACTTAATCTAATTTTATCCAACCTTGTTATAAGCGTAACACCCCACAAAGTGTAACACTTAAGACTATCACATAATATCATCAACTCTGTTTGCATATTAAAGATTCCAACGATAAAATAGTACATGTAAGTCCAAGATGTTGCAAAGCATTACTAGATGAATTACTATTGATCATTAATCAGTAATCAACAATTTAAAACTGAATCAAACATTAAAATCAAAATTAACTTTTTCAAAAAAATCAGTTTCCTGACTGCACTGTAGAAGCTCCCTTCCCTTAGTTGGATCTCTAAGTTTATCTACTAGTTTCTCCTCCTGAAGGTCTCAGGTTCGATTCTCTCTGATGTCAATTTGAGTGAGTTAATTTAGCTCAAAAAAAAAAGTTTATCTACTAGATTCTAGTGTGTTTTTTGAAGGACTAAGGTGAATAAGATTTGCAGAATCGGTGATGTTTTAGTATTAAAATTACTTTAAAACAACTGGTACAAAACTTGGATATATATCTTAAACTAGAAATCTGAAAAGGCAAACTATTTATGTTTACCTACAAATATTGTTCTTAAATTTTTATCTTTGTTTAGAAAAATGCGTCCTTATCTTTCGTTTTCAATAATTCTTTCATACCACACAATTTTATTTTCATATGGTATTAATTCCCGTCACATGACAACAGATGGCAATATACACACATGTCATGAGCGTCTTGAAGAAGTTGATGAACAGAATAAAAAACTCACTTACAAGCTCTTCGGTGGAGATATTGGGGAGAACTATAAGGATTTTAAGCTCATTATTCAAATAATTGATAATAGTGGCAGCAGTGCTGCCATCAAATGGACAATTGAATATGAGAAGATCAATGAGGATATTGACCCTCCTAATGGCTGGATGGACTACGTTGCAAAACTTACTAGAGATATTGATGCTCATCTGGTCAAAGCATAG

Protein sequence

>MS.gene058381.t1

MVLNGKLSTELGIKASVDKFYNFFATQLHDMQIHCERVHETKLHQGDDWHHTDTVKHWTYVIDGNIHTCHERLEEVDEQNKKLTYKLFGGDIGENYKDFKLIIQIIDNSGSSAAIKWTIEYEKINEDIDPPNGWMDYVAKLTRDIDAHLVKA