Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055340.t1 | XP_027337161.1 | 59 | 239 | 90 | 6 | 1 | 234 | 44 | 279 | 3.90E-64 | 255 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055340.t1 | Q9C870 | 32.0 | 153 | 97 | 4 | 9 | 157 | 25 | 174 | 1.6e-10 | 68.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055340.t1 | A0A0R0KHT0 | 59.2 | 238 | 89 | 6 | 1 | 233 | 1 | 235 | 4.8e-64 | 254.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055340 | MS.gene073526 | 0.801945 | 7.08E-49 | -1.69E-46 |
| MS.gene055340 | MS.gene22157 | 0.812884 | 3.39E-51 | -1.69E-46 |
| MS.gene055340 | MS.gene29888 | 0.815546 | 8.75E-52 | -1.69E-46 |
| MS.gene055340 | MS.gene38435 | 0.807461 | 5.00E-50 | -1.69E-46 |
| MS.gene055340 | MS.gene40846 | 0.818968 | 1.49E-52 | -1.69E-46 |
| MS.gene055340 | MS.gene47719 | 0.80268 | 5.00E-49 | -1.69E-46 |
| MS.gene055340 | MS.gene48023 | 0.810756 | 9.84E-51 | -1.69E-46 |
| MS.gene055340 | MS.gene80744 | 0.829642 | 4.59E-55 | -1.69E-46 |
| MS.gene055340 | MS.gene85494 | 0.806952 | 6.41E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055340.t1 | MTR_8g006190 | 51.969 | 254 | 99 | 8 | 1 | 233 | 1 | 252 | 7.35e-69 | 219 |
| MS.gene055340.t1 | MTR_8g006190 | 29.060 | 234 | 133 | 9 | 10 | 227 | 177 | 393 | 1.44e-19 | 87.8 |
| MS.gene055340.t1 | MTR_8g006190 | 50.211 | 237 | 95 | 8 | 18 | 233 | 10 | 244 | 9.03e-58 | 190 |
| MS.gene055340.t1 | MTR_8g006190 | 29.060 | 234 | 133 | 9 | 10 | 227 | 169 | 385 | 2.45e-19 | 87.4 |
| MS.gene055340.t1 | MTR_4g123750 | 40.167 | 239 | 131 | 8 | 4 | 234 | 34 | 268 | 4.97e-46 | 157 |
| MS.gene055340.t1 | MTR_1g041240 | 31.818 | 132 | 78 | 4 | 7 | 132 | 72 | 197 | 4.03e-12 | 66.6 |
| MS.gene055340.t1 | MTR_1g041240 | 31.818 | 132 | 78 | 4 | 7 | 132 | 73 | 198 | 4.14e-12 | 66.6 |
| MS.gene055340.t1 | MTR_1g041240 | 31.818 | 132 | 78 | 4 | 7 | 132 | 71 | 196 | 4.34e-12 | 66.6 |
| MS.gene055340.t1 | MTR_5g091450 | 33.036 | 112 | 70 | 3 | 10 | 121 | 51 | 157 | 4.14e-11 | 63.5 |
| MS.gene055340.t1 | MTR_5g086700 | 31.092 | 119 | 76 | 3 | 5 | 123 | 74 | 186 | 9.10e-11 | 62.4 |
| MS.gene055340.t1 | MTR_5g086700 | 31.092 | 119 | 76 | 3 | 5 | 123 | 74 | 186 | 9.62e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055340.t1 | AT5G26260 | 36.797 | 231 | 137 | 6 | 6 | 232 | 78 | 303 | 1.27e-42 | 149 |
| MS.gene055340.t1 | AT3G17380 | 40.271 | 221 | 122 | 6 | 3 | 217 | 35 | 251 | 5.78e-41 | 143 |
| MS.gene055340.t1 | AT3G17380 | 36.667 | 120 | 72 | 2 | 6 | 125 | 189 | 304 | 2.77e-18 | 83.2 |
| MS.gene055340.t1 | AT5G26290 | 35.897 | 234 | 137 | 5 | 6 | 235 | 70 | 294 | 9.14e-39 | 138 |
| MS.gene055340.t1 | AT5G26280 | 35.931 | 231 | 139 | 6 | 6 | 232 | 77 | 302 | 9.64e-38 | 136 |
| MS.gene055340.t1 | AT5G26280 | 35.931 | 231 | 139 | 6 | 6 | 232 | 96 | 321 | 2.49e-37 | 135 |
| MS.gene055340.t1 | AT5G26300 | 34.783 | 230 | 141 | 6 | 5 | 230 | 76 | 300 | 2.97e-37 | 135 |
| MS.gene055340.t1 | AT5G26320 | 35.000 | 220 | 134 | 6 | 6 | 219 | 77 | 293 | 1.27e-34 | 128 |
| MS.gene055340.t1 | AT3G20360 | 34.310 | 239 | 144 | 8 | 6 | 235 | 86 | 320 | 7.34e-34 | 126 |
| MS.gene055340.t1 | AT4G09770 | 33.778 | 225 | 134 | 9 | 1 | 219 | 22 | 237 | 1.23e-33 | 123 |
| MS.gene055340.t1 | AT4G09770 | 33.778 | 225 | 134 | 9 | 1 | 219 | 48 | 263 | 2.50e-33 | 122 |
| MS.gene055340.t1 | AT4G09770 | 33.778 | 225 | 134 | 9 | 1 | 219 | 22 | 237 | 6.01e-33 | 122 |
| MS.gene055340.t1 | AT4G09770 | 33.778 | 225 | 134 | 9 | 1 | 219 | 22 | 237 | 6.01e-33 | 122 |
| MS.gene055340.t1 | AT4G09780 | 33.937 | 221 | 132 | 9 | 1 | 215 | 75 | 287 | 7.52e-33 | 124 |
| MS.gene055340.t1 | AT2G04190 | 35.193 | 233 | 139 | 8 | 6 | 232 | 137 | 363 | 8.16e-33 | 124 |
| MS.gene055340.t1 | AT4G09780 | 33.937 | 221 | 132 | 9 | 1 | 215 | 75 | 287 | 9.41e-33 | 124 |
| MS.gene055340.t1 | AT4G09770 | 33.778 | 225 | 134 | 9 | 1 | 219 | 48 | 263 | 1.10e-32 | 122 |
| MS.gene055340.t1 | AT2G04170 | 34.632 | 231 | 144 | 6 | 6 | 233 | 25 | 251 | 1.56e-32 | 121 |
| MS.gene055340.t1 | AT2G04170 | 34.632 | 231 | 144 | 6 | 6 | 233 | 25 | 251 | 1.56e-32 | 121 |
| MS.gene055340.t1 | AT2G04170 | 34.632 | 231 | 144 | 6 | 6 | 233 | 107 | 333 | 6.97e-32 | 121 |
| MS.gene055340.t1 | AT2G04170 | 34.632 | 231 | 144 | 6 | 6 | 233 | 147 | 373 | 1.19e-31 | 121 |
| MS.gene055340.t1 | AT2G04170 | 34.632 | 231 | 144 | 6 | 6 | 233 | 147 | 373 | 1.19e-31 | 121 |
| MS.gene055340.t1 | AT2G04170 | 35.484 | 217 | 135 | 5 | 6 | 219 | 147 | 361 | 4.61e-31 | 119 |
| MS.gene055340.t1 | AT2G15710 | 35.000 | 220 | 132 | 8 | 4 | 216 | 112 | 327 | 1.74e-30 | 117 |
| MS.gene055340.t1 | AT3G28220 | 33.036 | 224 | 146 | 3 | 6 | 227 | 100 | 321 | 3.12e-30 | 116 |
| MS.gene055340.t1 | AT2G04170 | 37.870 | 169 | 102 | 3 | 6 | 173 | 147 | 313 | 1.67e-28 | 111 |
| MS.gene055340.t1 | AT3G20370 | 35.648 | 216 | 129 | 8 | 6 | 216 | 105 | 315 | 1.44e-27 | 109 |
| MS.gene055340.t1 | AT3G20370 | 35.648 | 216 | 129 | 8 | 6 | 216 | 83 | 293 | 1.78e-27 | 108 |
| MS.gene055340.t1 | AT3G20380 | 31.034 | 232 | 152 | 6 | 8 | 234 | 107 | 335 | 5.40e-27 | 108 |
| MS.gene055340.t1 | AT3G22080 | 30.472 | 233 | 152 | 8 | 7 | 233 | 42 | 270 | 5.72e-27 | 107 |
| MS.gene055340.t1 | AT5G26280 | 31.304 | 230 | 128 | 6 | 6 | 232 | 77 | 279 | 1.67e-26 | 105 |
| MS.gene055340.t1 | AT3G22085 | 32.093 | 215 | 121 | 6 | 7 | 216 | 35 | 229 | 3.55e-25 | 101 |
| MS.gene055340.t1 | AT1G58270 | 29.741 | 232 | 149 | 7 | 7 | 229 | 117 | 343 | 4.40e-23 | 97.4 |
| MS.gene055340.t1 | AT4G01390 | 30.638 | 235 | 143 | 9 | 3 | 230 | 35 | 256 | 1.31e-21 | 92.0 |
| MS.gene055340.t1 | AT4G00780 | 29.150 | 247 | 146 | 10 | 3 | 237 | 35 | 264 | 7.32e-21 | 90.1 |
| MS.gene055340.t1 | AT1G65150 | 29.245 | 212 | 138 | 7 | 6 | 214 | 32 | 234 | 2.36e-20 | 88.6 |
| MS.gene055340.t1 | AT1G65150 | 29.245 | 212 | 138 | 7 | 6 | 214 | 32 | 234 | 2.36e-20 | 88.6 |
| MS.gene055340.t1 | AT3G46190 | 29.665 | 209 | 116 | 5 | 8 | 216 | 54 | 231 | 4.84e-19 | 85.1 |
| MS.gene055340.t1 | AT3G46190 | 29.665 | 209 | 116 | 5 | 8 | 216 | 74 | 251 | 7.93e-19 | 84.7 |
| MS.gene055340.t1 | AT1G69660 | 30.387 | 181 | 116 | 7 | 59 | 234 | 13 | 188 | 5.57e-17 | 78.2 |
| MS.gene055340.t1 | AT2G32880 | 27.273 | 231 | 134 | 9 | 8 | 219 | 42 | 257 | 6.59e-15 | 73.2 |
| MS.gene055340.t1 | AT2G32880 | 26.860 | 242 | 142 | 10 | 8 | 230 | 42 | 267 | 8.19e-15 | 73.6 |
| MS.gene055340.t1 | AT1G65370 | 37.313 | 134 | 74 | 6 | 61 | 191 | 21 | 147 | 9.06e-15 | 72.0 |
| MS.gene055340.t1 | AT2G32870 | 28.085 | 235 | 139 | 10 | 13 | 232 | 147 | 366 | 8.61e-14 | 71.2 |
| MS.gene055340.t1 | AT3G58210 | 35.652 | 115 | 70 | 3 | 10 | 124 | 26 | 136 | 1.39e-13 | 70.1 |
| MS.gene055340.t1 | AT2G32870 | 27.928 | 222 | 132 | 9 | 13 | 219 | 147 | 355 | 9.77e-13 | 67.8 |
| MS.gene055340.t1 | AT5G06600 | 31.624 | 117 | 74 | 3 | 7 | 123 | 71 | 181 | 4.66e-11 | 63.5 |
| MS.gene055340.t1 | AT5G06600 | 31.624 | 117 | 74 | 3 | 7 | 123 | 70 | 180 | 4.82e-11 | 63.5 |
| MS.gene055340.t1 | AT5G06600 | 31.624 | 117 | 74 | 3 | 7 | 123 | 71 | 181 | 4.96e-11 | 63.5 |
Find 53 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGAAAGAGTTTCCGATTT+TGG | 0.140172 | 8.2:+83732683 | None:intergenic |
| TTCAGCTGTAACAGGCAATT+TGG | 0.253651 | 8.2:-83730712 | MS.gene055340:intron |
| TGAGAAATTAATTTCAATAA+AGG | 0.303806 | 8.2:-83732789 | MS.gene055340:CDS |
| TAAATATCTATCTTTATATC+TGG | 0.313804 | 8.2:-83732412 | MS.gene055340:CDS |
| CTCTTTGATCATAAATCTAA+TGG | 0.318877 | 8.2:-83732764 | MS.gene055340:CDS |
| GTTAAAGATTCATGTAAGTT+TGG | 0.352706 | 8.2:-83732734 | MS.gene055340:CDS |
| TTCACAAAATGTTCGTACTT+TGG | 0.387792 | 8.2:+83732832 | None:intergenic |
| GGAGCCGAGGTCTTTGTGAT+TGG | 0.401821 | 8.2:-83732713 | MS.gene055340:CDS |
| CATTTGAAGGTGGTAATAGT+AGG | 0.403933 | 8.2:+83732650 | None:intergenic |
| ATTCTCAAGTTTCCATTTGA+AGG | 0.412817 | 8.2:+83732637 | None:intergenic |
| GGCAATTTGGTTGAAGCATC+AGG | 0.413335 | 8.2:-83730699 | MS.gene055340:intron |
| CGACCATGAGAAATCTTCTC+TGG | 0.422242 | 8.2:+83733043 | None:intergenic |
| GATTGGCCATTCTCCAAAAT+CGG | 0.423899 | 8.2:-83732696 | MS.gene055340:CDS |
| AATATATATCATCAGAAAAC+AGG | 0.435853 | 8.2:-83732315 | MS.gene055340:intron |
| TCGCTGATGGTGAGAGAGAT+TGG | 0.436811 | 8.2:-83732574 | MS.gene055340:intron |
| CTACTATTACCACCTTCAAA+TGG | 0.451881 | 8.2:-83732649 | MS.gene055340:CDS |
| GACAAATATTTGACCATCCA+AGG | 0.479118 | 8.2:-83732974 | MS.gene055340:intron |
| TTGTCTATGCTCTAGGAAGC+TGG | 0.480937 | 8.2:-83733134 | MS.gene055340:intron |
| TTCAAGCCGGTGGATGCAAA+TGG | 0.484140 | 8.2:-83733405 | MS.gene055340:intron |
| CAGTCATGTCTCCTTGTACC+TGG | 0.490593 | 8.2:-83733077 | MS.gene055340:CDS |
| GATATATATTATGACGCAGC+TGG | 0.496110 | 8.2:+83732328 | None:intergenic |
| AACTAACCATTTGCATCCAC+CGG | 0.496568 | 8.2:+83733399 | None:intergenic |
| AGCACCTGGTTTCATCCCTC+AGG | 0.508606 | 8.2:-83732150 | MS.gene055340:intron |
| TAAAGATAGATATTTATCTC+TGG | 0.513225 | 8.2:+83732419 | None:intergenic |
| AACAAGTTGCATGGAGCCAC+AGG | 0.519051 | 8.2:-83730566 | MS.gene055340:intron |
| ACCAACTTCGTTGGAGCCAC+AGG | 0.520088 | 8.2:-83730307 | MS.gene055340:intron |
| ATCTGCAATTGCCAGGTACA+AGG | 0.527718 | 8.2:+83733066 | None:intergenic |
| ACCTGTGGCTCCAACGAAGT+TGG | 0.530717 | 8.2:+83730306 | None:intergenic |
| TCTCTGGATCTGCAATTGCC+AGG | 0.542810 | 8.2:+83733059 | None:intergenic |
| GCTGCAACAACCAACTTCGT+TGG | 0.544294 | 8.2:-83730316 | MS.gene055340:CDS |
| TTTCTACTGCAGAAAGCACC+TGG | 0.551121 | 8.2:-83732164 | MS.gene055340:intron |
| ACATTGAATAGCCTCTCTTA+CGG | 0.553391 | 8.2:-83732608 | MS.gene055340:CDS |
| CTCAAGTTTCCATTTGAAGG+TGG | 0.560421 | 8.2:+83732640 | None:intergenic |
| CATGCAGCAAACAAGTTGCA+TGG | 0.565885 | 8.2:-83730575 | MS.gene055340:intron |
| GGCTCTGAAACCCTCGCTGA+TGG | 0.569307 | 8.2:-83732587 | MS.gene055340:CDS |
| ATCTCTCTCACCATCAGCGA+GGG | 0.569789 | 8.2:+83732577 | None:intergenic |
| TAACGTGTAAGTTGCATACA+CGG | 0.577845 | 8.2:+83732362 | None:intergenic |
| TGTGAAGAGAAAACTGAATG+TGG | 0.581542 | 8.2:-83732815 | MS.gene055340:CDS |
| AGTATGGTATGTACCTTGGA+TGG | 0.581643 | 8.2:+83732961 | None:intergenic |
| TTCATGTAAGTTTGGAGCCG+AGG | 0.584355 | 8.2:-83732726 | MS.gene055340:CDS |
| CAGAGAAGATTTCTCATGGT+CGG | 0.596163 | 8.2:-83733042 | MS.gene055340:CDS |
| GAAGATTTCTCATGGTCGGA+AGG | 0.598974 | 8.2:-83733038 | MS.gene055340:CDS |
| AAAATCGGAAACTCTTTCTG+TGG | 0.600093 | 8.2:-83732681 | MS.gene055340:CDS |
| TTAAGGGTTTATCCTAGAGG+AGG | 0.606690 | 8.2:-83732453 | MS.gene055340:CDS |
| GGGTTTCAGAGCCGTAAGAG+AGG | 0.607647 | 8.2:+83732597 | None:intergenic |
| GTCGCAGCATCACCTCCTCT+AGG | 0.613173 | 8.2:+83732441 | None:intergenic |
| GATCCAGAGAAGATTTCTCA+TGG | 0.621654 | 8.2:-83733046 | MS.gene055340:CDS |
| AGTGGTAATTTGAAAAGCAG+TGG | 0.637493 | 8.2:-83733100 | MS.gene055340:CDS |
| ATTACCTGAGGGATGAAACC+AGG | 0.643021 | 8.2:+83732146 | None:intergenic |
| AAGCTGGTACTTTATCCTAG+TGG | 0.650531 | 8.2:-83733118 | MS.gene055340:CDS |
| CTTGTTAATGAACTACACGA+TGG | 0.659091 | 8.2:-83733449 | None:intergenic |
| ATGGCCAATCACAAAGACCT+CGG | 0.659943 | 8.2:+83732709 | None:intergenic |
| AATCTCTCTCACCATCAGCG+AGG | 0.699996 | 8.2:+83732576 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGAATATTTTATGAATT+TGG | + | chr8.2:83732724-83732743 | None:intergenic | 10.0% |
| !! | AAAATTTGAAAAAAACAACT+AGG | + | chr8.2:83730759-83730778 | None:intergenic | 15.0% |
| !! | TAAATATCTATCTTTATATC+TGG | - | chr8.2:83731238-83731257 | MS.gene055340:intron | 15.0% |
| !! | TGAGAAATTAATTTCAATAA+AGG | - | chr8.2:83730861-83730880 | MS.gene055340:intron | 15.0% |
| !!! | AAATGTAATATAACGTTTTT+TGG | + | chr8.2:83732090-83732109 | None:intergenic | 15.0% |
| !!! | ACTTACAAATTCTAAAAATA+AGG | - | chr8.2:83732697-83732716 | MS.gene055340:CDS | 15.0% |
| !!! | TTTTTTACACAATTATTGTT+GGG | - | chr8.2:83733238-83733257 | MS.gene055340:intron | 15.0% |
| !!! | TTTTTTTACACAATTATTGT+TGG | - | chr8.2:83733237-83733256 | MS.gene055340:intron | 15.0% |
| !! | AATAACAAACAAAAAATGCA+AGG | + | chr8.2:83730283-83730302 | None:intergenic | 20.0% |
| !! | AATATATATCATCAGAAAAC+AGG | - | chr8.2:83731335-83731354 | MS.gene055340:intron | 20.0% |
| !! | ATAACAAACAAAAAATGCAA+GGG | + | chr8.2:83730282-83730301 | None:intergenic | 20.0% |
| !! | ATATCATAATAACAAAGAAG+TGG | + | chr8.2:83733128-83733147 | None:intergenic | 20.0% |
| !! | CTAATTCTATTGTTAAGATA+AGG | - | chr8.2:83732667-83732686 | MS.gene055340:CDS | 20.0% |
| !! | TAAAGATAGATATTTATCTC+TGG | + | chr8.2:83731234-83731253 | None:intergenic | 20.0% |
| !! | TTGTTTATTAAATGTAGAAG+TGG | + | chr8.2:83733406-83733425 | None:intergenic | 20.0% |
| !!! | AAAGAAAAAAAAGTACAACT+TGG | + | chr8.2:83732920-83732939 | None:intergenic | 20.0% |
| !!! | AATTTGTTATGTATATATGC+AGG | - | chr8.2:83731171-83731190 | MS.gene055340:intron | 20.0% |
| !!! | ATTTTGAGACAATGATTTTT+GGG | - | chr8.2:83731402-83731421 | MS.gene055340:intron | 20.0% |
| !!! | CAAATTCAAATAACATTTTG+TGG | - | chr8.2:83733170-83733189 | MS.gene055340:intron | 20.0% |
| !!! | TATTTTGAGACAATGATTTT+TGG | - | chr8.2:83731401-83731420 | MS.gene055340:intron | 20.0% |
| !!! | TGAAAATTTAGATTTTTTGC+TGG | - | chr8.2:83731781-83731800 | MS.gene055340:intron | 20.0% |
| !!! | TTTTTACACAATTATTGTTG+GGG | - | chr8.2:83733239-83733258 | MS.gene055340:intron | 20.0% |
| !!! | TTTTTTTTGAGACAGATTTT+GGG | - | chr8.2:83732851-83732870 | MS.gene055340:intron | 20.0% |
| ! | AAAACTTGGCTTATTAACAA+TGG | + | chr8.2:83732142-83732161 | None:intergenic | 25.0% |
| ! | AAAATGACCCCAAAATATAA+AGG | + | chr8.2:83731382-83731401 | None:intergenic | 25.0% |
| ! | AATTGCGATTAAAATCAACT+AGG | + | chr8.2:83731688-83731707 | None:intergenic | 25.0% |
| ! | ACAGGTAATAATGATATCTA+CGG | - | chr8.2:83733102-83733121 | MS.gene055340:CDS | 25.0% |
| ! | ACATTGCATTATATATGCAT+GGG | - | chr8.2:83731993-83732012 | MS.gene055340:intron | 25.0% |
| ! | ATTCTATTGTTAAGATAAGG+AGG | - | chr8.2:83732670-83732689 | MS.gene055340:CDS | 25.0% |
| ! | CATCAATTATTGCAAGTAAA+GGG | - | chr8.2:83731727-83731746 | MS.gene055340:intron | 25.0% |
| ! | CTAGACGAAAATTCATAAAA+AGG | + | chr8.2:83732328-83732347 | None:intergenic | 25.0% |
| ! | CTCTTTGATCATAAATCTAA+TGG | - | chr8.2:83730886-83730905 | MS.gene055340:intron | 25.0% |
| ! | GTAAAGAAAAGAAACACATA+TGG | + | chr8.2:83730342-83730361 | None:intergenic | 25.0% |
| ! | GTTAAAGATTCATGTAAGTT+TGG | - | chr8.2:83730916-83730935 | MS.gene055340:intron | 25.0% |
| ! | TCGCAATTATTGCAATTAAA+AGG | - | chr8.2:83731700-83731719 | MS.gene055340:intron | 25.0% |
| !! | AGTTTTCTCCATAAAAGATA+GGG | - | chr8.2:83732448-83732467 | MS.gene055340:CDS | 25.0% |
| !! | ATGAATAAGTTAGGTGTTTT+AGG | + | chr8.2:83732032-83732051 | None:intergenic | 25.0% |
| !! | ATGTGTTTCTTTTCTTTACT+AGG | - | chr8.2:83730343-83730362 | MS.gene055340:intron | 25.0% |
| !! | CTTTTTATGAATTTTCGTCT+AGG | - | chr8.2:83732326-83732345 | MS.gene055340:CDS | 25.0% |
| !! | GCTATCAAAAAATTTTGCAA+TGG | + | chr8.2:83732352-83732371 | None:intergenic | 25.0% |
| !! | GTATATATGCAGGATTTTAA+GGG | - | chr8.2:83731181-83731200 | MS.gene055340:intron | 25.0% |
| !! | TAGTTTTCTCCATAAAAGAT+AGG | - | chr8.2:83732447-83732466 | MS.gene055340:CDS | 25.0% |
| !! | TATCAGTGCCTTTATATTTT+GGG | - | chr8.2:83731371-83731390 | MS.gene055340:intron | 25.0% |
| !! | TGTATATATGCAGGATTTTA+AGG | - | chr8.2:83731180-83731199 | MS.gene055340:intron | 25.0% |
| !! | TTAATAAGCCAAGTTTTTGA+GGG | - | chr8.2:83732145-83732164 | MS.gene055340:intron | 25.0% |
| !! | TTATCAGTGCCTTTATATTT+TGG | - | chr8.2:83731370-83731389 | MS.gene055340:intron | 25.0% |
| !!! | GTTTTTTTTGAGACAGATTT+TGG | - | chr8.2:83732850-83732869 | MS.gene055340:intron | 25.0% |
| !!! | TGGTTGCACAATTATTTTTT+TGG | + | chr8.2:83732122-83732141 | None:intergenic | 25.0% |
| !!! | TTTTTGGTCAAGTAGTTTAA+CGG | + | chr8.2:83732074-83732093 | None:intergenic | 25.0% |
| !!! | TTTTTTTGAGACAGATTTTG+GGG | - | chr8.2:83732852-83732871 | MS.gene055340:intron | 25.0% |
| ATCAACATAGATAAACTCAC+TGG | + | chr8.2:83731969-83731988 | None:intergenic | 30.0% | |
| ATTCTCAAGTTTCCATTTGA+AGG | + | chr8.2:83731016-83731035 | None:intergenic | 30.0% | |
| CCATCAATTATTGCAAGTAA+AGG | - | chr8.2:83731726-83731745 | MS.gene055340:intron | 30.0% | |
| CCTAACTTATTCATCTTAAC+AGG | - | chr8.2:83732038-83732057 | MS.gene055340:intron | 30.0% | |
| CCTGTTAAGATGAATAAGTT+AGG | + | chr8.2:83732041-83732060 | None:intergenic | 30.0% | |
| CCTTTACTTGCAATAATTGA+TGG | + | chr8.2:83731729-83731748 | None:intergenic | 30.0% | |
| CTTTCGATTTACATTCTTTG+TGG | - | chr8.2:83731829-83731848 | MS.gene055340:intron | 30.0% | |
| GACATTGCATTATATATGCA+TGG | - | chr8.2:83731992-83732011 | MS.gene055340:intron | 30.0% | |
| GGAGAAAACTATGATATCTT+TGG | + | chr8.2:83732438-83732457 | None:intergenic | 30.0% | |
| GTAGATATCATTATTACCTG+TGG | + | chr8.2:83733103-83733122 | None:intergenic | 30.0% | |
| TGACTCTTGATTATTGTAGA+TGG | - | chr8.2:83730793-83730812 | MS.gene055340:intron | 30.0% | |
| TGCATGATTCATAAGTAGTA+TGG | + | chr8.2:83730708-83730727 | None:intergenic | 30.0% | |
| TTCACAAAATGTTCGTACTT+TGG | + | chr8.2:83730821-83730840 | None:intergenic | 30.0% | |
| TTCTCGATTCAACAAGTATT+AGG | - | chr8.2:83731752-83731771 | MS.gene055340:intron | 30.0% | |
| ! | ATCAGTGCCTTTATATTTTG+GGG | - | chr8.2:83731372-83731391 | MS.gene055340:intron | 30.0% |
| ! | ATTTGTGAAAGGCTTTGATT+TGG | - | chr8.2:83732477-83732496 | MS.gene055340:intron | 30.0% |
| ! | GTCTTTTGTGTTTGTATTTG+TGG | - | chr8.2:83732552-83732571 | MS.gene055340:intron | 30.0% |
| ! | GTTAATAAGCCAAGTTTTTG+AGG | - | chr8.2:83732144-83732163 | MS.gene055340:intron | 30.0% |
| ! | TATCTGGAGCTAAAAAATTG+TGG | - | chr8.2:83731254-83731273 | MS.gene055340:intron | 30.0% |
| ! | TTTCTTTTCTTTACTAGGAG+CGG | - | chr8.2:83730348-83730367 | MS.gene055340:intron | 30.0% |
| !! | ATTTTAAGGGTTTATCCTAG+AGG | - | chr8.2:83731194-83731213 | MS.gene055340:intron | 30.0% |
| !! | TAGTGCTATTCTTTTGATGA+TGG | - | chr8.2:83730396-83730415 | MS.gene055340:intron | 30.0% |
| !! | TCATTTGTTTGTTATATCCC+TGG | - | chr8.2:83730302-83730321 | MS.gene055340:intron | 30.0% |
| !!! | TTTTTTCTTTCAGCTGTAAC+AGG | - | chr8.2:83732930-83732949 | MS.gene055340:intron | 30.0% |
| AAAAGGTTAACATCTCCTTC+TGG | - | chr8.2:83732229-83732248 | MS.gene055340:intron | 35.0% | |
| AAAATCGGAAACTCTTTCTG+TGG | - | chr8.2:83730969-83730988 | MS.gene055340:intron | 35.0% | |
| AAGTAGTATGGTATGTACCT+TGG | + | chr8.2:83730696-83730715 | None:intergenic | 35.0% | |
| AAGTTTGTATCAACCTTAGG+TGG | - | chr8.2:83732513-83732532 | MS.gene055340:intron | 35.0% | |
| AATTAAGTGTGTATGACGAG+AGG | + | chr8.2:83731120-83731139 | None:intergenic | 35.0% | |
| ACATTGAATAGCCTCTCTTA+CGG | - | chr8.2:83731042-83731061 | MS.gene055340:intron | 35.0% | |
| AGTGGTAATTTGAAAAGCAG+TGG | - | chr8.2:83730550-83730569 | MS.gene055340:intron | 35.0% | |
| ATGGTTCTTACTAGAAAACC+AGG | + | chr8.2:83730323-83730342 | None:intergenic | 35.0% | |
| CATACGAGATGTATTCTATG+TGG | - | chr8.2:83732578-83732597 | MS.gene055340:CDS | 35.0% | |
| CATTTGAAGGTGGTAATAGT+AGG | + | chr8.2:83731003-83731022 | None:intergenic | 35.0% | |
| CTACTATTACCACCTTCAAA+TGG | - | chr8.2:83731001-83731020 | MS.gene055340:intron | 35.0% | |
| GACAAATATTTGACCATCCA+AGG | - | chr8.2:83730676-83730695 | MS.gene055340:intron | 35.0% | |
| GATATATATTATGACGCAGC+TGG | + | chr8.2:83731325-83731344 | None:intergenic | 35.0% | |
| GCATTATATATGCATGGGTT+GGG | - | chr8.2:83731998-83732017 | MS.gene055340:intron | 35.0% | |
| TAACGTGTAAGTTGCATACA+CGG | + | chr8.2:83731291-83731310 | None:intergenic | 35.0% | |
| TATGAATGCTTCTTATTGCG+AGG | - | chr8.2:83732821-83732840 | MS.gene055340:CDS | 35.0% | |
| TCATAGAAAACTCTTACCTG+TGG | + | chr8.2:83733362-83733381 | None:intergenic | 35.0% | |
| TGCATTATATATGCATGGGT+TGG | - | chr8.2:83731997-83732016 | MS.gene055340:intron | 35.0% | |
| TGGTTCTTACTAGAAAACCA+GGG | + | chr8.2:83730322-83730341 | None:intergenic | 35.0% | |
| TGTGAAGAGAAAACTGAATG+TGG | - | chr8.2:83730835-83730854 | MS.gene055340:intron | 35.0% | |
| TTCCTGACGATACTGAAAAA+AGG | - | chr8.2:83732212-83732231 | MS.gene055340:intron | 35.0% | |
| TTGATACAAACTTGCGAAGA+TGG | + | chr8.2:83732506-83732525 | None:intergenic | 35.0% | |
| ! | ACAGAAAGAGTTTCCGATTT+TGG | + | chr8.2:83730970-83730989 | None:intergenic | 35.0% |
| ! | ATTGCTCTCCCTATCTTTTA+TGG | + | chr8.2:83732459-83732478 | None:intergenic | 35.0% |
| ! | CATTATATATGCATGGGTTG+GGG | - | chr8.2:83731999-83732018 | MS.gene055340:intron | 35.0% |
| ! | TTCTTTTCTTTACTAGGAGC+GGG | - | chr8.2:83730349-83730368 | MS.gene055340:intron | 35.0% |
| !! | ACTTAGTTTTTGCTCTTCTC+TGG | - | chr8.2:83731882-83731901 | MS.gene055340:intron | 35.0% |
| !! | ATTATATATGCATGGGTTGG+GGG | - | chr8.2:83732000-83732019 | MS.gene055340:intron | 35.0% |
| !! | CTGCTTTTCAAATTACCACT+AGG | + | chr8.2:83730550-83730569 | None:intergenic | 35.0% |
| !!! | AACCTTTTTTCAGTATCGTC+AGG | + | chr8.2:83732217-83732236 | None:intergenic | 35.0% |
| !!! | TGTGATTGTGTTTTTTTCCC+TGG | - | chr8.2:83731928-83731947 | MS.gene055340:intron | 35.0% |
| AACTAACCATTTGCATCCAC+CGG | + | chr8.2:83730254-83730273 | None:intergenic | 40.0% | |
| AAGCTGGTACTTTATCCTAG+TGG | - | chr8.2:83730532-83730551 | MS.gene055340:intron | 40.0% | |
| AGTATGGTATGTACCTTGGA+TGG | + | chr8.2:83730692-83730711 | None:intergenic | 40.0% | |
| ATCAGTTGTATCACCACCTA+AGG | + | chr8.2:83732529-83732548 | None:intergenic | 40.0% | |
| CAGAGAAGATTTCTCATGGT+CGG | - | chr8.2:83730608-83730627 | MS.gene055340:intron | 40.0% | |
| CCAACTATCCCTCAAAAACT+TGG | + | chr8.2:83732156-83732175 | None:intergenic | 40.0% | |
| CGCAAGTTTGTATCAACCTT+AGG | - | chr8.2:83732510-83732529 | MS.gene055340:intron | 40.0% | |
| CTCAAGTTTCCATTTGAAGG+TGG | + | chr8.2:83731013-83731032 | None:intergenic | 40.0% | |
| GATCCAGAGAAGATTTCTCA+TGG | - | chr8.2:83730604-83730623 | MS.gene055340:intron | 40.0% | |
| TAGGGAGAGCAATTTGTGAA+AGG | - | chr8.2:83732466-83732485 | MS.gene055340:intron | 40.0% | |
| TAGGTGGTGATACAACTGAT+GGG | - | chr8.2:83732529-83732548 | MS.gene055340:intron | 40.0% | |
| TGCAGAAAACGATTACCTGA+GGG | + | chr8.2:83731518-83731537 | None:intergenic | 40.0% | |
| TTAAGGGTTTATCCTAGAGG+AGG | - | chr8.2:83731197-83731216 | MS.gene055340:intron | 40.0% | |
| TTACCTTCACCAGAATCATG+AGG | + | chr8.2:83732267-83732286 | None:intergenic | 40.0% | |
| TTAGGTGGTGATACAACTGA+TGG | - | chr8.2:83732528-83732547 | MS.gene055340:intron | 40.0% | |
| TTCAGCTGTAACAGGCAATT+TGG | - | chr8.2:83732938-83732957 | MS.gene055340:intron | 40.0% | |
| TTGCAGAAAACGATTACCTG+AGG | + | chr8.2:83731519-83731538 | None:intergenic | 40.0% | |
| ! | GATTGGCCATTCTCCAAAAT+CGG | - | chr8.2:83730954-83730973 | MS.gene055340:intron | 40.0% |
| ! | GTTGTTGTTGTCTATGCTCT+AGG | - | chr8.2:83730509-83730528 | MS.gene055340:intron | 40.0% |
| ! | TAACATCTCCTTCTGGTTGT+TGG | - | chr8.2:83732236-83732255 | MS.gene055340:intron | 40.0% |
| ! | TGGTTGAAGCATCAGGTAAT+GGG | - | chr8.2:83732958-83732977 | MS.gene055340:intron | 40.0% |
| ! | TTGGTTGAAGCATCAGGTAA+TGG | - | chr8.2:83732957-83732976 | MS.gene055340:intron | 40.0% |
| !! | CCAAGTTTTTGAGGGATAGT+TGG | - | chr8.2:83732153-83732172 | MS.gene055340:CDS | 40.0% |
| !! | GAGTTTCCGATTTTGGAGAA+TGG | + | chr8.2:83730963-83730982 | None:intergenic | 40.0% |
| !!! | GAGTCCAATGTTTTTCAAGC+CGG | - | chr8.2:83730232-83730251 | MS.gene055340:intron | 40.0% |
| AGACCTCATGATTCTGGTGA+AGG | - | chr8.2:83732261-83732280 | MS.gene055340:intron | 45.0% | |
| AGGTGGTGATACAACTGATG+GGG | - | chr8.2:83732530-83732549 | MS.gene055340:intron | 45.0% | |
| ATCTGCAATTGCCAGGTACA+AGG | + | chr8.2:83730587-83730606 | None:intergenic | 45.0% | |
| ATGGCCAATCACAAAGACCT+CGG | + | chr8.2:83730944-83730963 | None:intergenic | 45.0% | |
| ATTACCTGAGGGATGAAACC+AGG | + | chr8.2:83731507-83731526 | None:intergenic | 45.0% | |
| CATGCAGCAAACAAGTTGCA+TGG | - | chr8.2:83733075-83733094 | MS.gene055340:CDS | 45.0% | |
| CGACCATGAGAAATCTTCTC+TGG | + | chr8.2:83730610-83730629 | None:intergenic | 45.0% | |
| GAAGATTTCTCATGGTCGGA+AGG | - | chr8.2:83730612-83730631 | MS.gene055340:intron | 45.0% | |
| GGAACAAAACATCGTTGCCA+GGG | + | chr8.2:83731948-83731967 | None:intergenic | 45.0% | |
| TGGAACAAAACATCGTTGCC+AGG | + | chr8.2:83731949-83731968 | None:intergenic | 45.0% | |
| TTGGTCAGACCTCATGATTC+TGG | - | chr8.2:83732255-83732274 | MS.gene055340:intron | 45.0% | |
| ! | GGCAATTTGGTTGAAGCATC+AGG | - | chr8.2:83732951-83732970 | MS.gene055340:intron | 45.0% |
| ! | TTCATGTAAGTTTGGAGCCG+AGG | - | chr8.2:83730924-83730943 | MS.gene055340:intron | 45.0% |
| !! | TCCACCGGCTTGAAAAACAT+TGG | + | chr8.2:83730239-83730258 | None:intergenic | 45.0% |
| !! | TTGTCTATGCTCTAGGAAGC+TGG | - | chr8.2:83730516-83730535 | MS.gene055340:intron | 45.0% |
| !! | TTTCTACTGCAGAAAGCACC+TGG | - | chr8.2:83731486-83731505 | MS.gene055340:intron | 45.0% |
| !!! | TCCAATGTTTTTCAAGCCGG+TGG | - | chr8.2:83730235-83730254 | MS.gene055340:intron | 45.0% |
| !! | ATATAAATTTATTAAAATCT+AGG | + | chr8.2:83731629-83731648 | None:intergenic | 5.0% |
| !!! | AAAATATTTTAAGTTTAATT+CGG | + | chr8.2:83733211-83733230 | None:intergenic | 5.0% |
| AACAAGTTGCATGGAGCCAC+AGG | - | chr8.2:83733084-83733103 | MS.gene055340:CDS | 50.0% | |
| AATCTCTCTCACCATCAGCG+AGG | + | chr8.2:83731077-83731096 | None:intergenic | 50.0% | |
| AGGTCTGACCAACAACCAGA+AGG | + | chr8.2:83732247-83732266 | None:intergenic | 50.0% | |
| ATCTCTCTCACCATCAGCGA+GGG | + | chr8.2:83731076-83731095 | None:intergenic | 50.0% | |
| CAGTCATGTCTCCTTGTACC+TGG | - | chr8.2:83730573-83730592 | MS.gene055340:intron | 50.0% | |
| GCTGCAACAACCAACTTCGT+TGG | - | chr8.2:83733334-83733353 | MS.gene055340:intron | 50.0% | |
| TCTCTGGATCTGCAATTGCC+AGG | + | chr8.2:83730594-83730613 | None:intergenic | 50.0% | |
| TCTTTACTAGGAGCGGGACA+TGG | - | chr8.2:83730355-83730374 | MS.gene055340:intron | 50.0% | |
| TTCAAGCCGGTGGATGCAAA+TGG | - | chr8.2:83730245-83730264 | MS.gene055340:intron | 50.0% | |
| ! | ACGAAGTTGGTTGTTGCAGC+TGG | + | chr8.2:83733334-83733353 | None:intergenic | 50.0% |
| ! | TCGCTGATGGTGAGAGAGAT+TGG | - | chr8.2:83731076-83731095 | MS.gene055340:intron | 50.0% |
| ACCAACTTCGTTGGAGCCAC+AGG | - | chr8.2:83733343-83733362 | MS.gene055340:intron | 55.0% | |
| ACCTGTGGCTCCAACGAAGT+TGG | + | chr8.2:83733347-83733366 | None:intergenic | 55.0% | |
| AGCACCTGGTTTCATCCCTC+AGG | - | chr8.2:83731500-83731519 | MS.gene055340:intron | 55.0% | |
| GGAGCCGAGGTCTTTGTGAT+TGG | - | chr8.2:83730937-83730956 | MS.gene055340:intron | 55.0% | |
| GGGTTTCAGAGCCGTAAGAG+AGG | + | chr8.2:83731056-83731075 | None:intergenic | 55.0% | |
| GTCGCAGCATCACCTCCTCT+AGG | + | chr8.2:83731212-83731231 | None:intergenic | 60.0% | |
| !! | GGCTCTGAAACCCTCGCTGA+TGG | - | chr8.2:83731063-83731082 | MS.gene055340:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 83730208 | 83733464 | 83730208 | ID=MS.gene055340 |
| chr8.2 | mRNA | 83730208 | 83733464 | 83730208 | ID=MS.gene055340.t1;Parent=MS.gene055340 |
| chr8.2 | exon | 83733406 | 83733464 | 83733406 | ID=MS.gene055340.t1.exon1;Parent=MS.gene055340.t1 |
| chr8.2 | CDS | 83733406 | 83733464 | 83733406 | ID=cds.MS.gene055340.t1;Parent=MS.gene055340.t1 |
| chr8.2 | exon | 83732975 | 83733141 | 83732975 | ID=MS.gene055340.t1.exon2;Parent=MS.gene055340.t1 |
| chr8.2 | CDS | 83732975 | 83733141 | 83732975 | ID=cds.MS.gene055340.t1;Parent=MS.gene055340.t1 |
| chr8.2 | exon | 83732575 | 83732860 | 83732575 | ID=MS.gene055340.t1.exon3;Parent=MS.gene055340.t1 |
| chr8.2 | CDS | 83732575 | 83732860 | 83732575 | ID=cds.MS.gene055340.t1;Parent=MS.gene055340.t1 |
| chr8.2 | exon | 83732316 | 83732479 | 83732316 | ID=MS.gene055340.t1.exon4;Parent=MS.gene055340.t1 |
| chr8.2 | CDS | 83732316 | 83732479 | 83732316 | ID=cds.MS.gene055340.t1;Parent=MS.gene055340.t1 |
| chr8.2 | exon | 83732151 | 83732174 | 83732151 | ID=MS.gene055340.t1.exon5;Parent=MS.gene055340.t1 |
| chr8.2 | CDS | 83732151 | 83732174 | 83732151 | ID=cds.MS.gene055340.t1;Parent=MS.gene055340.t1 |
| chr8.2 | exon | 83730700 | 83730729 | 83730700 | ID=MS.gene055340.t1.exon6;Parent=MS.gene055340.t1 |
| chr8.2 | CDS | 83730700 | 83730729 | 83730700 | ID=cds.MS.gene055340.t1;Parent=MS.gene055340.t1 |
| chr8.2 | exon | 83730567 | 83730590 | 83730567 | ID=MS.gene055340.t1.exon7;Parent=MS.gene055340.t1 |
| chr8.2 | CDS | 83730567 | 83730590 | 83730567 | ID=cds.MS.gene055340.t1;Parent=MS.gene055340.t1 |
| chr8.2 | exon | 83730308 | 83730337 | 83730308 | ID=MS.gene055340.t1.exon8;Parent=MS.gene055340.t1 |
| chr8.2 | CDS | 83730308 | 83730337 | 83730308 | ID=cds.MS.gene055340.t1;Parent=MS.gene055340.t1 |
| chr8.2 | exon | 83730208 | 83730236 | 83730208 | ID=MS.gene055340.t1.exon9;Parent=MS.gene055340.t1 |
| chr8.2 | CDS | 83730208 | 83730236 | 83730208 | ID=cds.MS.gene055340.t1;Parent=MS.gene055340.t1 |
| Gene Sequence |
| Protein sequence |
