AlfalfaGEDB | MS.gene22197

M. sativa cultivar XinJiangDaYe / MS.gene22197

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22197.t1	KEH33680.1	94	414	22	3	9	421	28	439	4.30E-219	770.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22197.t1	F4IDQ5	39.7	446	197	15	20	420	62	480	8.7e-59	229.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22197.t1	A0A072V681	94.0	414	22	3	9	421	28	439	3.1e-219	770.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052308	MS.gene22197	0.803836	2.88E-49	-1.69E-46
MS.gene054593	MS.gene22197	0.800193	1.62E-48	-1.69E-46
MS.gene058128	MS.gene22197	0.816759	4.69E-52	-1.69E-46
MS.gene058853	MS.gene22197	0.813291	2.76E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene000509	MS.gene22197	PPI
MS.gene017059	MS.gene22197	PPI
MS.gene019180	MS.gene22197	PPI
MS.gene22197	MS.gene038276	PPI
MS.gene22197	MS.gene47715	PPI
MS.gene48029	MS.gene22197	PPI
MS.gene69498	MS.gene22197	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22197.t1	MTR_3g450760	93.961	414	22	3	9	421	28	439	0.0	786
MS.gene22197.t1	MTR_5g090900	47.196	428	178	7	16	401	52	473	1.24e-114	343
MS.gene22197.t1	MTR_1g069610	39.683	126	62	4	263	380	317	436	3.08e-15	77.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22197.t1	AT1G06660	39.013	446	200	14	20	420	62	480	1.24e-68	225
MS.gene22197.t1	AT2G30820	36.534	427	197	12	20	412	31	417	5.18e-53	182
MS.gene22197.t1	AT2G30820	36.534	427	197	12	20	412	31	417	5.18e-53	182

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Find 113 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGACAATGTGCATTGTAAT+GGG	0.459347	3.4:+40684596	MS.gene22197:CDS
AATGGATTATGAAATGATGA+AGG	0.552080	3.4:+40683994	None:intergenic
ACACAAACTGGGACTTAACA+GGG	0.635382	3.4:-40686543	None:intergenic
ACCATAAGCCGATGACTCAC+AGG	0.559884	3.4:-40686437	None:intergenic
ACCCCAATGAAGATATCTGA+AGG	0.577653	3.4:+40686496	MS.gene22197:CDS
ACGACGCCACGGACTGTGGA+TGG	0.492778	3.4:-40687583	None:intergenic
AGAAGACAAGCCTTCTTCCA+CGG	0.626278	3.4:-40686713	None:intergenic
AGAAGCCAAGAACGAAACTT+TGG	0.484007	3.4:-40685774	None:intergenic
AGATAAAAGTGAATCTACCG+TGG	0.669633	3.4:+40686696	MS.gene22197:CDS
AGCCAAGAACGAAACTTTGG+AGG	0.594708	3.4:-40685771	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTCATCATCTCAAGAAG+GGG	-	chr3.4:40684155-40684174	None:intergenic	30.0%
AACAACCACACAATCAATTT+CGG	+	chr3.4:40685996-40686015	MS.gene22197:intron	30.0%
AAGACAATGTGCATTGTAAT+GGG	+	chr3.4:40684596-40684615	MS.gene22197:CDS	30.0%
AAGAGATTGCAGTTAAGTTA+TGG	-	chr3.4:40685226-40685245	None:intergenic	30.0%
AATGTGTTCCTCTTCAAAAT+TGG	+	chr3.4:40686114-40686133	MS.gene22197:intron	30.0%
ACAAATTCATCATCTCAAGA+AGG	-	chr3.4:40684157-40684176	None:intergenic	30.0%
AGAAACCTGTATGATTTAGT+GGG	-	chr3.4:40687444-40687463	None:intergenic	30.0%
AGACTTCTAATTCTTTCACA+TGG	-	chr3.4:40686966-40686985	None:intergenic	30.0%
AGGAATTCAACGATACATAA+AGG	-	chr3.4:40687247-40687266	None:intergenic	30.0%
AGTATCACATTCAAAACGTA+CGG	-	chr3.4:40686407-40686426	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	40683995	40687610	40683995	ID=MS.gene22197
chr3.4	mRNA	40683995	40687610	40683995	ID=MS.gene22197.t1;Parent=MS.gene22197
chr3.4	exon	40683995	40684039	40683995	ID=MS.gene22197.t1.exon1;Parent=MS.gene22197.t1
chr3.4	CDS	40683995	40684039	40683995	ID=cds.MS.gene22197.t1;Parent=MS.gene22197.t1
chr3.4	exon	40684432	40684480	40684432	ID=MS.gene22197.t1.exon2;Parent=MS.gene22197.t1
chr3.4	CDS	40684432	40684480	40684432	ID=cds.MS.gene22197.t1;Parent=MS.gene22197.t1
chr3.4	exon	40684590	40684669	40684590	ID=MS.gene22197.t1.exon3;Parent=MS.gene22197.t1
chr3.4	CDS	40684590	40684669	40684590	ID=cds.MS.gene22197.t1;Parent=MS.gene22197.t1
chr3.4	exon	40685666	40685913	40685666	ID=MS.gene22197.t1.exon4;Parent=MS.gene22197.t1
chr3.4	CDS	40685666	40685913	40685666	ID=cds.MS.gene22197.t1;Parent=MS.gene22197.t1
chr3.4	exon	40686288	40686939	40686288	ID=MS.gene22197.t1.exon5;Parent=MS.gene22197.t1
chr3.4	CDS	40686288	40686939	40686288	ID=cds.MS.gene22197.t1;Parent=MS.gene22197.t1
chr3.4	exon	40687025	40687107	40687025	ID=MS.gene22197.t1.exon6;Parent=MS.gene22197.t1
chr3.4	CDS	40687025	40687107	40687025	ID=cds.MS.gene22197.t1;Parent=MS.gene22197.t1
chr3.4	exon	40687502	40687610	40687502	ID=MS.gene22197.t1.exon7;Parent=MS.gene22197.t1
chr3.4	CDS	40687502	40687610	40687502	ID=cds.MS.gene22197.t1;Parent=MS.gene22197.t1

Gene Sequence

>MS.gene22197

ATGGATTATGAAATGATGAAGGATTCTGAAAATTTTGAAATGTTAGTTCTGATTGCAATGTTTTAGTGTTTGAAATTTTATTTAGGAGCTTTGTTTGGTAGCTAAAATGTTGAATGGTTGAGATGATCGCTTCATTCGGCTGAATTTTAATTATTTTCCCCTTCTTGAGATGATGAATTTGTTGCTTACAAGTTCTAGTTACTGAAATTTTAGGATTTTTTGTTGAAAAAGTATTTAATAGTTTTCATGGGCATTGAATTTTGCTGATTCTGAGTATGTTCTGCTTCTGGTTGCTGAAATTTTTGGATTTTTTTTTGTTGAAAAAATATTTAATAATTTTAATCGTCATTGAATTTTGTTGATTCTGTGAGTGTTCTGTGTAATTATTGTTTTGACTTTTTGATGTGACTGGTAAGAATTTGCTCTTTGTAAAGCAGGATGATGTGGCGTCTCGAAACCGTTTGTCTACTTTGTTTCTGACCGAAGGTAAATTTATTTTGCTATCATTATTATTCTTATGTGCTATTTTCTTTTACAGTTTTGATGTTATGGACTCTCAGTAATGTACTAATTTTGGGGTTTAAATTTTGAAAAGAGGGAGAAGACAATGTGCATTGTAATGGGAGAAATTTTGAGGAGGGATCACAGAGTGATGATAGGCAGCTTAAAGACGAGGTGTGTTTTTTTGTTGTGTATTACAAACATAGCTGCAACTGTTGTGTGATTATTCATGCATGTTTAGCTGTTTGGAGGTTTTCTTGTTAGTTTGTAATGTGTATTCGCAATTCGGCCATTTCGCTCCTGATATAAGACTAAGACACTGAGGTAAAATAAATGCTTTTTCGATTCAGAACTCTACTTGATAGTATTGGTTTTCAAGACACGAAGATGTCTCATTGAGAATGGCCAGAATTATGACCTGAAGCTATTTTTTATCTTTCAATTTTGACCAACTCTCAAGTATTGAATTGAACTATTGAATTGAATCTTTAGTTTCTGTTTAAGTGAGGTTTAAACAATGTTACCGTTTATGTTTATGGTAGACAGCCACAGTGCTTACTTCTTCAATGTGCTGAAATGCTTTAACTTAGTTAATGTAGGAACCATCGTTAGTATAACACTTACCACGATACTAAGAAAGCCTTGATACTCACTACATTGTATTTTTCGATCTCAAGGTTCTGGCAGTAGGGTAACTTACAGATAAATGCACAATTTGGTCACACATCCATAACTTAACTGCAATCTCTTTACTTTTTTAATGAAGGTAGAAATTATCTGGTTGTCCATGGTGCATTCCTGGCTAAGATTTGTGGTGTATGCACCTGTATATCTATATAGTATGTCGTTTAACTACAAGCATATGCATGTCCTGGGCTGGCTCACAAACTTTTTGTAAACCTCAAAAACTCAATTATCTAAAGACTAAAATAGCTGATGTTTTGCTGGTGGAAGGAAATGAGTCTTGATAGAATACTTCTTCAAATTTGATTTTTGAAATCGTACAAATCAATTTTTTTTTTTTTTTTTTTATCATGAGTGAAGTATGTTTTCATTATTTACTTGCAAAATTCCTCAAAAACACCTTTTTAAGTCATTTGTCTATTCTGTTTAATTTGTTGATTCTTTTATGTATTAAGTTTGTTTACATGATTTGGTAAACATTTGCAGGCAAAGTTTCTTAAAGCTTGTGGTACCATAGCAAGTACCCCTACTGAAATTCGGAAAGCATCGGAGAAACTAAAAGTGTCACCTTCATGTAGTAACGATTCTGGTCCTCCAAAGTTTCGTTCTTGGCTTCTTGATACATCTGCTGAGAATGTTCCAACTAATGTCCAACCATTCAATCCGCCAACTCCCAAAAAACAATGTGAAGAATGGGAGAAAATAACAGATTGTTCAGACCACACACCTAGCAGGTTATTAATCTTTAACCTTTTTTTTTGAAAGGCAATCTTTAACCTGTTTAATGCATGTAATGTACAATATTGAATGTGAAGAAACAACCACACAATCAATTTCGGTGGATGTTCTCTTATTTACTATTAGCGCGATGGGACACCATCTTGTATAAGAAAGGCTTAAGGCTTCAGCTTATGACTATTATAGAACCTAAGAAAATGTGTTCCTCTTCAAAATTGGTGTTTTAGAAAATGGTGAAAATGATTTTTACATTTTTCCCTTTTAGATTTTTTAAGGGCATATCTTATGGGGTTTCACTGAACGTGCTCATGTATTTTGACCATATTAAATATAACCTTTTCAGTAGTTAATTTCTTTTTTTCATTTACAGCTGTATCTCCAATGCACACAATACTCAATGGGAATATCATGACTCTTCGGAAGGAAGTGGGCAGGGGAGCTATCATCCGACCGATGGGACTGAAATGAATAAGGGGAGGAACAAGTCCGTACGTTTTGAATGTGATACTGATATTTCATCCTGTGAGTCATCGGCTTATGGTGGATGGCGTACGAAGAAAACAGAGTCACCAAATCCTACCCCAATGAAGATATCTGAAGGGATGCAAACTCCTGGAACTGTTTACCCTGTTAAGTCCCAGTTTGTGTATCCAAATAACAGCCTAGGTGAGGATGTCTCTAAGAGCAAGATACTTGAGGAAGAGGATTATGTTCCTGCGCAAGATTCAAGGAAGATGAACAAGTCAATTGAGCAGTCTCAAAATGCAACGTCTACACCAGATAAAAGTGAATCTACCGTGGAAGAAGGCTTGTCTTCTTGGTTGAAGCCTGCATCTGTTATTTTGGAGGAGAGAAGAAAGAAAATGGAGATGGCTTATAATCAGACCCGCAAAACTCCTGTCGATAGGCCCATCATTGGGATGGTTGCTGCACATTGGATTGAAGAGGAAAATTCTGATGCTCCTCCTCCTAAGTGGTGGGATGGCAATGGCATACCAAATTCAACCAACAAATACAAAGAAGTATGATCCTTGGTAGCTATTTTCCATGTGAAAGAATTAGAAGTCTAGATGTTACTTATGCCTAATTAATGCTGATTGTTTTCAGGACCAGAAAGTGAGCTGGCATGCTACGCCGTTCGAAGAGAGGTTGGAGAAGGCATTATCTGAGGATACTATCATCGCTCAAAGGTATGCCTATGAAAGCACTGTTGTTTGCTTGTGAGCTCTATTCGCCTTTGAAAGTTAAAACGATATTCAGAAGTTTGTACTTCTGATGCGGTTTTTTTTGCTAAAATACTTCATACTGAACAACATACACAACAGTCCTTTATGTATCGTTGAATTCCTGAGTTTAGCATGACGTTGAAGATAAAATGTTATTGCTATTGTTCACAGAATATCCATATACATAAGCAATTTACCATTTGACAAAAGACCACTTACTTTTGTATTGAGTGCTAAGCATACTCAAACACTTTCTTTAACACATTTTTAATGAGTCTCGCGATTTTGATAATTGGTCCCACTAAATCATACAGGTTTCTCATAATACTGTCTTTTTGATTTGTGATTTGGTTCACAGGAAAGATATTTGCGGAAAACCAATTGCTTTTGACGAGAATGAAGAAAGCGATACTGCATTGTCTCATTTGAAATCTTCATCCCATCCACAGTCCGTGGCGTCGTGTTGA

Protein sequence

>MS.gene22197.t1

MDYEMMKDSENFEMLDDVASRNRLSTLFLTEEGEDNVHCNGRNFEEGSQSDDRQLKDEAKFLKACGTIASTPTEIRKASEKLKVSPSCSNDSGPPKFRSWLLDTSAENVPTNVQPFNPPTPKKQCEEWEKITDCSDHTPSSCISNAHNTQWEYHDSSEGSGQGSYHPTDGTEMNKGRNKSVRFECDTDISSCESSAYGGWRTKKTESPNPTPMKISEGMQTPGTVYPVKSQFVYPNNSLGEDVSKSKILEEEDYVPAQDSRKMNKSIEQSQNATSTPDKSESTVEEGLSSWLKPASVILEERRKKMEMAYNQTRKTPVDRPIIGMVAAHWIEEENSDAPPPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEDTIIAQRKDICGKPIAFDENEESDTALSHLKSSSHPQSVASC