Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22779.t1 | XP_013450601.1 | 97.5 | 408 | 10 | 0 | 1 | 408 | 1 | 408 | 9.70E-232 | 812.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22779.t1 | Q9M363 | 51.1 | 364 | 169 | 6 | 37 | 394 | 32 | 392 | 7.8e-105 | 382.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22779.t1 | A0A072U4F8 | 97.5 | 408 | 10 | 0 | 1 | 408 | 1 | 408 | 7.0e-232 | 812.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050649 | MS.gene22779 | 0.980082 | 2.09E-149 | -1.69E-46 |
| MS.gene054799 | MS.gene22779 | 0.804098 | 2.54E-49 | -1.69E-46 |
| MS.gene054805 | MS.gene22779 | 0.817735 | 2.83E-52 | -1.69E-46 |
| MS.gene058206 | MS.gene22779 | 0.844799 | 6.04E-59 | -1.69E-46 |
| MS.gene060317 | MS.gene22779 | 0.846306 | 2.36E-59 | -1.69E-46 |
| MS.gene060652 | MS.gene22779 | 0.816176 | 6.33E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22779.t1 | MTR_7g117375 | 97.549 | 408 | 10 | 0 | 1 | 408 | 1 | 408 | 0.0 | 823 |
| MS.gene22779.t1 | MTR_8g028075 | 35.312 | 337 | 206 | 6 | 44 | 374 | 220 | 550 | 6.83e-70 | 230 |
| MS.gene22779.t1 | MTR_8g028075 | 32.164 | 171 | 109 | 5 | 39 | 203 | 23 | 192 | 2.42e-17 | 84.3 |
| MS.gene22779.t1 | MTR_4g133620 | 28.571 | 308 | 187 | 10 | 101 | 385 | 87 | 384 | 1.68e-31 | 124 |
| MS.gene22779.t1 | MTR_5g093520 | 28.354 | 328 | 203 | 9 | 77 | 379 | 67 | 387 | 3.38e-31 | 123 |
| MS.gene22779.t1 | MTR_7g051910 | 30.435 | 345 | 203 | 15 | 65 | 385 | 43 | 374 | 1.12e-30 | 121 |
| MS.gene22779.t1 | MTR_8g009880 | 29.938 | 324 | 189 | 14 | 92 | 386 | 69 | 383 | 5.63e-29 | 117 |
| MS.gene22779.t1 | MTR_2g026080 | 29.470 | 302 | 183 | 10 | 104 | 384 | 94 | 386 | 7.16e-29 | 117 |
| MS.gene22779.t1 | MTR_5g097620 | 35.593 | 177 | 106 | 4 | 218 | 386 | 247 | 423 | 8.76e-27 | 111 |
| MS.gene22779.t1 | MTR_3g058510 | 26.316 | 285 | 197 | 6 | 104 | 378 | 87 | 368 | 6.41e-25 | 105 |
| MS.gene22779.t1 | MTR_8g028070 | 35.260 | 173 | 105 | 5 | 37 | 203 | 23 | 194 | 1.36e-23 | 99.4 |
| MS.gene22779.t1 | MTR_2g018960 | 24.629 | 337 | 216 | 9 | 74 | 384 | 518 | 842 | 4.93e-21 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22779.t1 | AT3G61750 | 52.770 | 343 | 155 | 5 | 37 | 375 | 32 | 371 | 1.48e-129 | 379 |
| MS.gene22779.t1 | AT3G61750 | 54.392 | 296 | 130 | 3 | 82 | 375 | 2 | 294 | 8.20e-115 | 338 |
| MS.gene22779.t1 | AT3G07570 | 35.519 | 366 | 218 | 9 | 26 | 380 | 11 | 369 | 1.26e-68 | 221 |
| MS.gene22779.t1 | AT5G47530 | 28.521 | 284 | 181 | 8 | 104 | 373 | 88 | 363 | 3.72e-31 | 123 |
| MS.gene22779.t1 | AT4G12980 | 35.556 | 180 | 109 | 3 | 216 | 388 | 212 | 391 | 8.07e-31 | 122 |
| MS.gene22779.t1 | AT3G25290 | 34.359 | 195 | 119 | 4 | 201 | 388 | 198 | 390 | 1.39e-30 | 121 |
| MS.gene22779.t1 | AT3G25290 | 34.359 | 195 | 119 | 4 | 201 | 388 | 198 | 390 | 1.39e-30 | 121 |
| MS.gene22779.t1 | AT5G35735 | 25.581 | 344 | 223 | 11 | 74 | 398 | 57 | 386 | 2.18e-27 | 112 |
| MS.gene22779.t1 | AT3G59070 | 30.667 | 225 | 140 | 5 | 187 | 397 | 183 | 405 | 2.44e-25 | 107 |
| MS.gene22779.t1 | AT4G17280 | 27.113 | 284 | 187 | 6 | 104 | 375 | 95 | 370 | 3.13e-25 | 106 |
| MS.gene22779.t1 | AT2G04850 | 26.398 | 322 | 197 | 12 | 92 | 383 | 71 | 382 | 1.52e-20 | 93.2 |
| MS.gene22779.t1 | AT5G54830 | 23.653 | 334 | 205 | 12 | 78 | 379 | 534 | 849 | 2.27e-13 | 72.4 |
Find 105 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGGGGCTGAAATTTATT+TGG | 0.168870 | 7.4:+1082462 | MS.gene22779:CDS |
| AGAGGATCCATTTGGAAATT+TGG | 0.184762 | 7.4:-1084034 | None:intergenic |
| GTACTAAAAGCCAATAAAAT+TGG | 0.228379 | 7.4:-1082523 | None:intergenic |
| CGAAACTTGGAATCCCTATT+TGG | 0.245262 | 7.4:-1083806 | None:intergenic |
| AGAAAGAATCATGGAATAAT+TGG | 0.246187 | 7.4:+1083334 | MS.gene22779:CDS |
| AGTTATCGTTCTCGAAATAT+TGG | 0.252993 | 7.4:+1083976 | MS.gene22779:CDS |
| TGCAGCCTTGAACATAGTTT+TGG | 0.253562 | 7.4:+1083880 | MS.gene22779:CDS |
| CATTCTTCTTGAGACCAAAT+AGG | 0.267115 | 7.4:+1083792 | MS.gene22779:CDS |
| GGACTTGCTACTGTCCTTCT+TGG | 0.268455 | 7.4:+1083475 | MS.gene22779:CDS |
| CATGGAATAATTGGTATTAT+AGG | 0.273911 | 7.4:+1083343 | MS.gene22779:CDS |
| CATTCAATCATTCAATTTGT+TGG | 0.280269 | 7.4:+1083442 | MS.gene22779:CDS |
| TGCCAAACGGGTTTGCATAT+TGG | 0.291944 | 7.4:-1081484 | None:intergenic |
| AATGGCAAAGCTAAGATCTT+TGG | 0.310082 | 7.4:+1081303 | None:intergenic |
| CCTGCTGCTGTGGCAACAAA+TGG | 0.314910 | 7.4:+1082445 | MS.gene22779:CDS |
| CCTTGTGCTAAGTATTCTTC+AGG | 0.315018 | 7.4:+1083561 | MS.gene22779:CDS |
| CAATTTGTTGGATTTGCATT+TGG | 0.319893 | 7.4:+1083454 | MS.gene22779:CDS |
| CCCTACACAGTTGGGTGGGT+GGG | 0.331717 | 7.4:+1082265 | MS.gene22779:CDS |
| CTTCAAACAACAATTCCATT+TGG | 0.339138 | 7.4:+1082493 | MS.gene22779:CDS |
| CTGCTGCTGTGGCAACAAAT+GGG | 0.354136 | 7.4:+1082446 | MS.gene22779:CDS |
| CCACAGTTGGTTTGGAAGAA+TGG | 0.354486 | 7.4:+1083847 | MS.gene22779:CDS |
| ATGGAATAATTGGTATTATA+GGG | 0.356476 | 7.4:+1083344 | MS.gene22779:CDS |
| ACAGTTGGGTGGGTGGGGAT+TGG | 0.365724 | 7.4:+1082271 | MS.gene22779:CDS |
| AACTTCAATACCATTGCATT+AGG | 0.373456 | 7.4:+1081376 | MS.gene22779:CDS |
| CTGGTATGTGGACATGCATT+TGG | 0.374194 | 7.4:-1083513 | None:intergenic |
| ATTCTTCTTGAGACCAAATA+GGG | 0.382671 | 7.4:+1083793 | MS.gene22779:CDS |
| CTTCTCCAAGAGGATCCATT+TGG | 0.387230 | 7.4:-1084042 | None:intergenic |
| GCAGCAGGCACGTTATTTAG+AGG | 0.399879 | 7.4:-1082430 | None:intergenic |
| CATTCCCAAAACTATGTTCA+AGG | 0.410754 | 7.4:-1083885 | None:intergenic |
| ATACCAGCTCACAGAGGAAT+TGG | 0.414517 | 7.4:+1083529 | MS.gene22779:CDS |
| AAAATTGGTTGCTTTCCAAA+TGG | 0.417606 | 7.4:-1082508 | None:intergenic |
| CCTACACAGTTGGGTGGGTG+GGG | 0.424223 | 7.4:+1082266 | MS.gene22779:CDS |
| AATTCATATGTATGCCAAAC+GGG | 0.434998 | 7.4:-1081496 | None:intergenic |
| ACAAGCTATGGATTCCTTGT+TGG | 0.442212 | 7.4:+1083938 | MS.gene22779:CDS |
| CTCCAATATGCAAACCCGTT+TGG | 0.444241 | 7.4:+1081482 | MS.gene22779:CDS |
| CCATTTGTTGCCACAGCAGC+AGG | 0.445115 | 7.4:-1082445 | None:intergenic |
| AATTTGTACCACAGTTGGTT+TGG | 0.448506 | 7.4:+1083839 | MS.gene22779:CDS |
| CCAAGAAATATTCAAACAAA+AGG | 0.450332 | 7.4:+1084073 | MS.gene22779:CDS |
| ATCAAGCAGTATTATCTAAG+AGG | 0.452095 | 7.4:+1082367 | MS.gene22779:CDS |
| CCTTCCACCAAATTTCCAAA+TGG | 0.454867 | 7.4:+1084027 | MS.gene22779:CDS |
| TGCGAGGTACTTCAAACATA+AGG | 0.459343 | 7.4:+1083399 | MS.gene22779:CDS |
| AAATATTGGCATATTTAAAA+CGG | 0.460423 | 7.4:+1083990 | MS.gene22779:CDS |
| TGGTATGTGGACATGCATTT+GGG | 0.466439 | 7.4:-1083512 | None:intergenic |
| CAGCAGGAGCAACGAATGCT+TGG | 0.473840 | 7.4:+1083912 | MS.gene22779:CDS |
| TCTCATTTGAATCAAACCAT+TGG | 0.474801 | 7.4:-1083314 | None:intergenic |
| CCATTTGGAAATTTGGTGGA+AGG | 0.482086 | 7.4:-1084027 | None:intergenic |
| TGAATCAAACCATTGGATGC+TGG | 0.484210 | 7.4:-1083307 | None:intergenic |
| ATTCAAATGAGAAAGAATCA+TGG | 0.487178 | 7.4:+1083325 | MS.gene22779:CDS |
| AATTTCCAAATGGATCCTCT+TGG | 0.487835 | 7.4:+1084037 | MS.gene22779:CDS |
| GGAGATGATATATTCTGATA+AGG | 0.491112 | 7.4:-1081463 | None:intergenic |
| TCAAACATAAGGAACCCCTT+TGG | 0.493885 | 7.4:+1083410 | MS.gene22779:CDS |
| TGTCATCATGCTTTGACAGA+TGG | 0.495892 | 7.4:-1082564 | None:intergenic |
| ACCCTACACAGTTGGGTGGG+TGG | 0.496193 | 7.4:+1082264 | MS.gene22779:CDS |
| TTGGCATACATATGAATTGA+GGG | 0.509114 | 7.4:+1081501 | MS.gene22779:CDS |
| CATTTGGAAATTTGGTGGAA+GGG | 0.509644 | 7.4:-1084026 | None:intergenic |
| GGATCCATTTGGAAATTTGG+TGG | 0.510637 | 7.4:-1084031 | None:intergenic |
| CCCACCCACCCAACTGTGTA+GGG | 0.511172 | 7.4:-1082265 | None:intergenic |
| ATGCATATCCTAACAAAAGA+TGG | 0.513584 | 7.4:-1081337 | None:intergenic |
| TGTGGAATTTGTACCACAGT+TGG | 0.515734 | 7.4:+1083834 | MS.gene22779:CDS |
| TGCTGCTGTGGCAACAAATG+GGG | 0.517059 | 7.4:+1082447 | MS.gene22779:CDS |
| CTCGCAACAATTGCACCTAC+TGG | 0.521608 | 7.4:-1083382 | None:intergenic |
| GATATATTCTGATAAGGTGG+AGG | 0.531218 | 7.4:-1081457 | None:intergenic |
| CAATTCATATGTATGCCAAA+CGG | 0.533146 | 7.4:-1081497 | None:intergenic |
| TATCTGCACCCTACACAGTT+GGG | 0.533408 | 7.4:+1082257 | MS.gene22779:CDS |
| ATTCCAAGTTTCGCAAAATG+TGG | 0.534133 | 7.4:+1083816 | MS.gene22779:CDS |
| ATAATTGGTATTATAGGGTG+GGG | 0.536263 | 7.4:+1083349 | MS.gene22779:CDS |
| GATGATATATTCTGATAAGG+TGG | 0.538968 | 7.4:-1081460 | None:intergenic |
| TAAGATCTTTGGTTCAGCTA+TGG | 0.539939 | 7.4:+1081314 | MS.gene22779:CDS |
| TTCCTCTGTGAGCTGGTATG+TGG | 0.543323 | 7.4:-1083525 | None:intergenic |
| CTGCACCCTACACAGTTGGG+TGG | 0.544650 | 7.4:+1082260 | MS.gene22779:CDS |
| ATGCCAATTCCTCTGTGAGC+TGG | 0.546668 | 7.4:-1083532 | None:intergenic |
| AATAATTGGTATTATAGGGT+GGG | 0.550790 | 7.4:+1083348 | MS.gene22779:CDS |
| AATGCTTGGAAGACAAGCTA+TGG | 0.552134 | 7.4:+1083926 | MS.gene22779:CDS |
| TTATCTGCACCCTACACAGT+TGG | 0.554095 | 7.4:+1082256 | MS.gene22779:CDS |
| GAATAATTGGTATTATAGGG+TGG | 0.554975 | 7.4:+1083347 | MS.gene22779:CDS |
| TTTGGCATACATATGAATTG+AGG | 0.559705 | 7.4:+1081500 | MS.gene22779:CDS |
| ATGGTGTTCATGTGGATGCT+TGG | 0.562567 | 7.4:-1082545 | None:intergenic |
| TTGAATGTAGATAGAACCAA+AGG | 0.567909 | 7.4:-1083426 | None:intergenic |
| GTTCAAGTGCAATGGTGGGA+TGG | 0.570789 | 7.4:+1082320 | MS.gene22779:CDS |
| AAATAACGTGCCTGCTGCTG+TGG | 0.575038 | 7.4:+1082435 | MS.gene22779:CDS |
| GGTTGGTTCAAGTGCAATGG+TGG | 0.590706 | 7.4:+1082315 | MS.gene22779:CDS |
| TGCACCCTACACAGTTGGGT+GGG | 0.592706 | 7.4:+1082261 | MS.gene22779:CDS |
| TGAATGTAGATAGAACCAAA+GGG | 0.600269 | 7.4:-1083425 | None:intergenic |
| AGTAGAGTTGTAATCCAAGA+AGG | 0.601579 | 7.4:-1083489 | None:intergenic |
| GGAAAGATTTCTTCTCCAAG+AGG | 0.601984 | 7.4:-1084052 | None:intergenic |
| TCTATGGATCCAGCATCCAA+TGG | 0.602260 | 7.4:+1083298 | MS.gene22779:CDS |
| CCCCACCCACCCAACTGTGT+AGG | 0.602301 | 7.4:-1082266 | None:intergenic |
| ATATATTCTGATAAGGTGGA+GGG | 0.605129 | 7.4:-1081456 | None:intergenic |
| CCTGAAGAATACTTAGCACA+AGG | 0.616760 | 7.4:-1083561 | None:intergenic |
| TCAGAAGTCATTGCAAACAA+AGG | 0.618190 | 7.4:+1082400 | MS.gene22779:CDS |
| CAACAATTGCACCTACTGGT+AGG | 0.621409 | 7.4:-1083378 | None:intergenic |
| TATTCTGATAAGGTGGAGGG+AGG | 0.635106 | 7.4:-1081453 | None:intergenic |
| AGGAGATGACACAACATCGT+CGG | 0.644400 | 7.4:+1081396 | MS.gene22779:CDS |
| TGCAGATAATATGATTGTTG+TGG | 0.646735 | 7.4:-1082242 | None:intergenic |
| CATCGTCGGAAAGTACATGC+AGG | 0.648599 | 7.4:+1081410 | MS.gene22779:CDS |
| CCATTCTTCCAAACCAACTG+TGG | 0.660006 | 7.4:-1083847 | None:intergenic |
| AATGGTTGGTTCAAGTGCAA+TGG | 0.660637 | 7.4:+1082312 | MS.gene22779:CDS |
| TGGGGATTAATCCTACCAGT+AGG | 0.662402 | 7.4:+1083367 | MS.gene22779:CDS |
| TGTGTCATCTCCTAATGCAA+TGG | 0.677178 | 7.4:-1081386 | None:intergenic |
| CAGTAGGTGCAATTGTTGCG+AGG | 0.680721 | 7.4:+1083383 | MS.gene22779:CDS |
| TTTGACAGATGGTGTTCATG+TGG | 0.686431 | 7.4:-1082553 | None:intergenic |
| GTTGGTTCAAGTGCAATGGT+GGG | 0.692220 | 7.4:+1082316 | MS.gene22779:CDS |
| GAATGTAGATAGAACCAAAG+GGG | 0.711232 | 7.4:-1083424 | None:intergenic |
| GTGGGATGGATTAATAAACG+TGG | 0.733010 | 7.4:+1082334 | MS.gene22779:CDS |
| TAACAATTATAATACCAACA+AGG | 0.736320 | 7.4:-1083952 | None:intergenic |
| GTCCACATACCAGCTCACAG+AGG | 0.789985 | 7.4:+1083523 | MS.gene22779:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATAAATCTTTAATTTC+TGG | - | chr7.4:1082175-1082194 | None:intergenic | 10.0% |
| !!! | TCAATTTTAAATCAAAATAA+TGG | - | chr7.4:1083223-1083242 | None:intergenic | 10.0% |
| !! | AAAGAATAATATCATTTCAA+TGG | + | chr7.4:1082844-1082863 | MS.gene22779:intron | 15.0% |
| !! | AAATATTGGCATATTTAAAA+CGG | + | chr7.4:1083990-1084009 | MS.gene22779:CDS | 15.0% |
| !! | AATTAAAGTTAGCAATAATT+TGG | - | chr7.4:1082684-1082703 | None:intergenic | 15.0% |
| !! | ATTCTTTGTTAATGTTAAAA+GGG | - | chr7.4:1082831-1082850 | None:intergenic | 15.0% |
| !! | TATTCTTTGTTAATGTTAAA+AGG | - | chr7.4:1082832-1082851 | None:intergenic | 15.0% |
| !!! | ATTATATTTGATTTTTCTTC+AGG | + | chr7.4:1082595-1082614 | MS.gene22779:CDS | 15.0% |
| !!! | TCTTTTATAACTTTGTTATT+AGG | + | chr7.4:1081828-1081847 | MS.gene22779:intron | 15.0% |
| !! | ACAAAACAACTTAAAAAACA+AGG | - | chr7.4:1084109-1084128 | None:intergenic | 20.0% |
| !! | ATCAAACATAATAAGTGAAA+TGG | - | chr7.4:1081593-1081612 | None:intergenic | 20.0% |
| !! | ATCAATGATAGATATTACTT+TGG | - | chr7.4:1081703-1081722 | None:intergenic | 20.0% |
| !! | ATCACAAAAATTAAGAAAGT+TGG | + | chr7.4:1082918-1082937 | MS.gene22779:intron | 20.0% |
| !! | ATGGAATAATTGGTATTATA+GGG | + | chr7.4:1083344-1083363 | MS.gene22779:CDS | 20.0% |
| !! | TAACAATTATAATACCAACA+AGG | - | chr7.4:1083955-1083974 | None:intergenic | 20.0% |
| !! | TCGCAAAAGTTATTTAAATT+TGG | + | chr7.4:1083699-1083718 | MS.gene22779:intron | 20.0% |
| !! | TGCAAACATAAACTAATTAT+CGG | - | chr7.4:1082990-1083009 | None:intergenic | 20.0% |
| !! | TTCTTTGTTAATGTTAAAAG+GGG | - | chr7.4:1082830-1082849 | None:intergenic | 20.0% |
| ! | AATAATTGGTATTATAGGGT+GGG | + | chr7.4:1083348-1083367 | MS.gene22779:CDS | 25.0% |
| ! | AGAAAGAATCATGGAATAAT+TGG | + | chr7.4:1083334-1083353 | MS.gene22779:CDS | 25.0% |
| ! | ATAGATATTACTTTGGACTT+TGG | - | chr7.4:1081696-1081715 | None:intergenic | 25.0% |
| ! | ATTCAAATGAGAAAGAATCA+TGG | + | chr7.4:1083325-1083344 | MS.gene22779:CDS | 25.0% |
| ! | CAAACATAAACTAATTATCG+GGG | - | chr7.4:1082988-1083007 | None:intergenic | 25.0% |
| ! | CAATCAGATCAAAATAATGT+TGG | + | chr7.4:1082043-1082062 | MS.gene22779:intron | 25.0% |
| ! | CATGGAATAATTGGTATTAT+AGG | + | chr7.4:1083343-1083362 | MS.gene22779:CDS | 25.0% |
| ! | CATTCAATCATTCAATTTGT+TGG | + | chr7.4:1083442-1083461 | MS.gene22779:CDS | 25.0% |
| ! | CCAAGAAATATTCAAACAAA+AGG | + | chr7.4:1084073-1084092 | MS.gene22779:CDS | 25.0% |
| ! | GATTAATTTCAACTGAATCT+TGG | + | chr7.4:1083131-1083150 | MS.gene22779:intron | 25.0% |
| ! | GCAAACATAAACTAATTATC+GGG | - | chr7.4:1082989-1083008 | None:intergenic | 25.0% |
| ! | GTACTAAAAGCCAATAAAAT+TGG | - | chr7.4:1082526-1082545 | None:intergenic | 25.0% |
| ! | TGATGTGATGAATAAATGAA+TGG | + | chr7.4:1081719-1081738 | MS.gene22779:intron | 25.0% |
| ! | TTAAGCAAAATACTAATCTC+CGG | + | chr7.4:1081907-1081926 | MS.gene22779:intron | 25.0% |
| ! | TTATTGCAGTACACAAAAAA+TGG | + | chr7.4:1082214-1082233 | MS.gene22779:intron | 25.0% |
| ! | TTTCAACGAACTTATGAATT+AGG | - | chr7.4:1081763-1081782 | None:intergenic | 25.0% |
| !! | GCTTTAAGTTATAAAACTCA+TGG | - | chr7.4:1081863-1081882 | None:intergenic | 25.0% |
| !! | TTCGTTGAAATAACAACTTT+TGG | + | chr7.4:1081773-1081792 | MS.gene22779:intron | 25.0% |
| !! | TTGAAAGGAGTCTTATATAA+AGG | + | chr7.4:1083087-1083106 | MS.gene22779:intron | 25.0% |
| !!! | AATACAATCTTGATAATGCA+GGG | + | chr7.4:1084146-1084165 | MS.gene22779:intron | 25.0% |
| !!! | ATTTTCTAGAGATGGAAAAA+TGG | + | chr7.4:1082294-1082313 | MS.gene22779:CDS | 25.0% |
| !!! | CAACATTATTTTGATCTGAT+TGG | - | chr7.4:1082045-1082064 | None:intergenic | 25.0% |
| !!! | CCTTTTGTTTGAATATTTCT+TGG | - | chr7.4:1084076-1084095 | None:intergenic | 25.0% |
| !!! | TAATACAATCTTGATAATGC+AGG | + | chr7.4:1084145-1084164 | MS.gene22779:intron | 25.0% |
| !!! | TATTTTGATCTGATTGGAAT+TGG | - | chr7.4:1082039-1082058 | None:intergenic | 25.0% |
| !!! | TGTTTGATTGTTGTTTAGAA+TGG | + | chr7.4:1081605-1081624 | MS.gene22779:intron | 25.0% |
| AAATGGGGCTGAAATTTATT+TGG | + | chr7.4:1082462-1082481 | MS.gene22779:CDS | 30.0% | |
| AACCATGTATGTTCAGATAT+TGG | + | chr7.4:1083769-1083788 | MS.gene22779:intron | 30.0% | |
| AACTTCAATACCATTGCATT+AGG | + | chr7.4:1081376-1081395 | MS.gene22779:CDS | 30.0% | |
| AATTCATATGTATGCCAAAC+GGG | - | chr7.4:1081499-1081518 | None:intergenic | 30.0% | |
| ACGATCATACTAGTAAATTG+TGG | - | chr7.4:1082871-1082890 | None:intergenic | 30.0% | |
| AGTTATCGTTCTCGAAATAT+TGG | + | chr7.4:1083976-1083995 | MS.gene22779:CDS | 30.0% | |
| ATAATTGGTATTATAGGGTG+GGG | + | chr7.4:1083349-1083368 | MS.gene22779:CDS | 30.0% | |
| ATATATTCTGATAAGGTGGA+GGG | - | chr7.4:1081459-1081478 | None:intergenic | 30.0% | |
| ATCAAGCAGTATTATCTAAG+AGG | + | chr7.4:1082367-1082386 | MS.gene22779:CDS | 30.0% | |
| ATGCATATCCTAACAAAAGA+TGG | - | chr7.4:1081340-1081359 | None:intergenic | 30.0% | |
| ATTCTTCTTGAGACCAAATA+GGG | + | chr7.4:1083793-1083812 | MS.gene22779:CDS | 30.0% | |
| CAATTCATATGTATGCCAAA+CGG | - | chr7.4:1081500-1081519 | None:intergenic | 30.0% | |
| CTTCAAACAACAATTCCATT+TGG | + | chr7.4:1082493-1082512 | MS.gene22779:CDS | 30.0% | |
| GAATAATTGGTATTATAGGG+TGG | + | chr7.4:1083347-1083366 | MS.gene22779:CDS | 30.0% | |
| GAATTCTAATTCCTCATTGT+TGG | + | chr7.4:1081542-1081561 | MS.gene22779:intron | 30.0% | |
| GATGATATATTCTGATAAGG+TGG | - | chr7.4:1081463-1081482 | None:intergenic | 30.0% | |
| GGAGATGATATATTCTGATA+AGG | - | chr7.4:1081466-1081485 | None:intergenic | 30.0% | |
| GTTATTATAACATGAGTCAG+TGG | - | chr7.4:1083591-1083610 | None:intergenic | 30.0% | |
| TAATGCAGCTGAAATTTGAA+AGG | + | chr7.4:1083072-1083091 | MS.gene22779:intron | 30.0% | |
| TCTCATTTGAATCAAACCAT+TGG | - | chr7.4:1083317-1083336 | None:intergenic | 30.0% | |
| TGAATGGAAAAAATGTGGTT+GGG | - | chr7.4:1081978-1081997 | None:intergenic | 30.0% | |
| TGAATGTAGATAGAACCAAA+GGG | - | chr7.4:1083428-1083447 | None:intergenic | 30.0% | |
| TGCAGATAATATGATTGTTG+TGG | - | chr7.4:1082245-1082264 | None:intergenic | 30.0% | |
| TTGAATGTAGATAGAACCAA+AGG | - | chr7.4:1083429-1083448 | None:intergenic | 30.0% | |
| TTGGCATACATATGAATTGA+GGG | + | chr7.4:1081501-1081520 | MS.gene22779:CDS | 30.0% | |
| TTTGGCATACATATGAATTG+AGG | + | chr7.4:1081500-1081519 | MS.gene22779:CDS | 30.0% | |
| ! | AAAATTGGTTGCTTTCCAAA+TGG | - | chr7.4:1082511-1082530 | None:intergenic | 30.0% |
| ! | TCAACGAGATCTTATGTTTT+GGG | - | chr7.4:1082894-1082913 | None:intergenic | 30.0% |
| ! | TGGAAAGCAACCAATTTTAT+TGG | + | chr7.4:1082513-1082532 | MS.gene22779:CDS | 30.0% |
| ! | TTGAAAATTATCCCTTTTGC+AGG | + | chr7.4:1083274-1083293 | MS.gene22779:intron | 30.0% |
| !! | CAATTTGTTGGATTTGCATT+TGG | + | chr7.4:1083454-1083473 | MS.gene22779:CDS | 30.0% |
| !!! | TTCTGGCTAGATTTTAGAAT+TGG | - | chr7.4:1082158-1082177 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTTCCTTCGCCT+CGG | + | chr7.4:1082766-1082785 | MS.gene22779:intron | 30.0% |
| AATTTCCAAATGGATCCTCT+TGG | + | chr7.4:1084037-1084056 | MS.gene22779:CDS | 35.0% | |
| AATTTGTACCACAGTTGGTT+TGG | + | chr7.4:1083839-1083858 | MS.gene22779:CDS | 35.0% | |
| AGAGGATCCATTTGGAAATT+TGG | - | chr7.4:1084037-1084056 | None:intergenic | 35.0% | |
| AGTAGAGTTGTAATCCAAGA+AGG | - | chr7.4:1083492-1083511 | None:intergenic | 35.0% | |
| ATTCCAAGTTTCGCAAAATG+TGG | + | chr7.4:1083816-1083835 | MS.gene22779:CDS | 35.0% | |
| CATTCCCAAAACTATGTTCA+AGG | - | chr7.4:1083888-1083907 | None:intergenic | 35.0% | |
| CATTCTTCTTGAGACCAAAT+AGG | + | chr7.4:1083792-1083811 | MS.gene22779:CDS | 35.0% | |
| CCTTGTGAATGGAAAAAATG+TGG | - | chr7.4:1081983-1082002 | None:intergenic | 35.0% | |
| GAATGTAGATAGAACCAAAG+GGG | - | chr7.4:1083427-1083446 | None:intergenic | 35.0% | |
| GATATATTCTGATAAGGTGG+AGG | - | chr7.4:1081460-1081479 | None:intergenic | 35.0% | |
| GTGAATGGAAAAAATGTGGT+TGG | - | chr7.4:1081979-1081998 | None:intergenic | 35.0% | |
| TAGAAGTAGAACCAACAATG+AGG | - | chr7.4:1081556-1081575 | None:intergenic | 35.0% | |
| TCAGAAGTCATTGCAAACAA+AGG | + | chr7.4:1082400-1082419 | MS.gene22779:CDS | 35.0% | |
| TCTAGAGATGGAAAAATGGT+TGG | + | chr7.4:1082298-1082317 | MS.gene22779:CDS | 35.0% | |
| TGCCAATATCTGAACATACA+TGG | - | chr7.4:1083774-1083793 | None:intergenic | 35.0% | |
| ! | ATTCCACATTTTGCGAAACT+TGG | - | chr7.4:1083822-1083841 | None:intergenic | 35.0% |
| ! | CATTTGGAAATTTGGTGGAA+GGG | - | chr7.4:1084029-1084048 | None:intergenic | 35.0% |
| ! | GTCAACGAGATCTTATGTTT+TGG | - | chr7.4:1082895-1082914 | None:intergenic | 35.0% |
| ! | GTTAATGTTAAAAGGGGTGT+TGG | - | chr7.4:1082824-1082843 | None:intergenic | 35.0% |
| ! | TAAGATCTTTGGTTCAGCTA+TGG | + | chr7.4:1081314-1081333 | MS.gene22779:CDS | 35.0% |
| ! | TTTTCTTCAGGTGCAAAATC+AGG | + | chr7.4:1082607-1082626 | MS.gene22779:CDS | 35.0% |
| !! | AGCAGAGAGCTTTTTATTTG+AGG | + | chr7.4:1083179-1083198 | MS.gene22779:intron | 35.0% |
| !! | GCAGAGAGCTTTTTATTTGA+GGG | + | chr7.4:1083180-1083199 | MS.gene22779:intron | 35.0% |
| !!! | CCACATTTTTTCCATTCACA+AGG | + | chr7.4:1081980-1081999 | MS.gene22779:intron | 35.0% |
| AATGCTTGGAAGACAAGCTA+TGG | + | chr7.4:1083926-1083945 | MS.gene22779:CDS | 40.0% | |
| ACAAGCTATGGATTCCTTGT+TGG | + | chr7.4:1083938-1083957 | MS.gene22779:CDS | 40.0% | |
| CCTGAAGAATACTTAGCACA+AGG | - | chr7.4:1083564-1083583 | None:intergenic | 40.0% | |
| CCTTCCACCAAATTTCCAAA+TGG | + | chr7.4:1084027-1084046 | MS.gene22779:CDS | 40.0% | |
| CCTTGTGCTAAGTATTCTTC+AGG | + | chr7.4:1083561-1083580 | MS.gene22779:CDS | 40.0% | |
| CGAAACTTGGAATCCCTATT+TGG | - | chr7.4:1083809-1083828 | None:intergenic | 40.0% | |
| GATCCATAGAACCTGCAAAA+GGG | - | chr7.4:1083288-1083307 | None:intergenic | 40.0% | |
| GATCTGATTGGAATTGGACT+CGG | - | chr7.4:1082033-1082052 | None:intergenic | 40.0% | |
| GGAAAGATTTCTTCTCCAAG+AGG | - | chr7.4:1084055-1084074 | None:intergenic | 40.0% | |
| GGATCCATTTGGAAATTTGG+TGG | - | chr7.4:1084034-1084053 | None:intergenic | 40.0% | |
| TCAAACATAAGGAACCCCTT+TGG | + | chr7.4:1083410-1083429 | MS.gene22779:CDS | 40.0% | |
| TGAATCAAACCATTGGATGC+TGG | - | chr7.4:1083310-1083329 | None:intergenic | 40.0% | |
| TGGAAAAAATGTGGTTGGGA+TGG | - | chr7.4:1081974-1081993 | None:intergenic | 40.0% | |
| TGGTATGTGGACATGCATTT+GGG | - | chr7.4:1083515-1083534 | None:intergenic | 40.0% | |
| TGTCATCATGCTTTGACAGA+TGG | - | chr7.4:1082567-1082586 | None:intergenic | 40.0% | |
| TGTGGAATTTGTACCACAGT+TGG | + | chr7.4:1083834-1083853 | MS.gene22779:CDS | 40.0% | |
| TGTGTCATCTCCTAATGCAA+TGG | - | chr7.4:1081389-1081408 | None:intergenic | 40.0% | |
| TTGGATAGCTCAAGAGTTAG+AGG | - | chr7.4:1082805-1082824 | None:intergenic | 40.0% | |
| TTTGACAGATGGTGTTCATG+TGG | - | chr7.4:1082556-1082575 | None:intergenic | 40.0% | |
| ! | AATGGTTGGTTCAAGTGCAA+TGG | + | chr7.4:1082312-1082331 | MS.gene22779:CDS | 40.0% |
| ! | AGCTATGGCCATCTTTTGTT+AGG | + | chr7.4:1081329-1081348 | MS.gene22779:CDS | 40.0% |
| ! | CCATTTGGAAATTTGGTGGA+AGG | - | chr7.4:1084030-1084049 | None:intergenic | 40.0% |
| ! | GCAGCCTTGAACATAGTTTT+GGG | + | chr7.4:1083881-1083900 | MS.gene22779:CDS | 40.0% |
| ! | TATCCCTTTTGCAGGTTCTA+TGG | + | chr7.4:1083282-1083301 | MS.gene22779:intron | 40.0% |
| ! | TGCAGCCTTGAACATAGTTT+TGG | + | chr7.4:1083880-1083899 | MS.gene22779:CDS | 40.0% |
| ! | TGCGAGGTACTTCAAACATA+AGG | + | chr7.4:1083399-1083418 | MS.gene22779:CDS | 40.0% |
| !! | GGGATTGGATTTTCTAGAGA+TGG | + | chr7.4:1082286-1082305 | MS.gene22779:CDS | 40.0% |
| !! | GTGGGATGGATTAATAAACG+TGG | + | chr7.4:1082334-1082353 | MS.gene22779:CDS | 40.0% |
| ACCAGATTCTCAAGGAAGTC+CGG | - | chr7.4:1081929-1081948 | None:intergenic | 45.0% | |
| AGGAGATGACACAACATCGT+CGG | + | chr7.4:1081396-1081415 | MS.gene22779:CDS | 45.0% | |
| ATACCAGCTCACAGAGGAAT+TGG | + | chr7.4:1083529-1083548 | MS.gene22779:CDS | 45.0% | |
| ATGGATGATCTCGCTAAAGG+TGG | - | chr7.4:1081955-1081974 | None:intergenic | 45.0% | |
| ATGGTGTTCATGTGGATGCT+TGG | - | chr7.4:1082548-1082567 | None:intergenic | 45.0% | |
| CAACAATTGCACCTACTGGT+AGG | - | chr7.4:1083381-1083400 | None:intergenic | 45.0% | |
| CCATTCTTCCAAACCAACTG+TGG | - | chr7.4:1083850-1083869 | None:intergenic | 45.0% | |
| CGGATCCTTAAGAAAGGCTT+CGG | - | chr7.4:1082013-1082032 | None:intergenic | 45.0% | |
| CTCCAATATGCAAACCCGTT+TGG | + | chr7.4:1081482-1081501 | MS.gene22779:CDS | 45.0% | |
| CTGGTATGTGGACATGCATT+TGG | - | chr7.4:1083516-1083535 | None:intergenic | 45.0% | |
| CTTCTCCAAGAGGATCCATT+TGG | - | chr7.4:1084045-1084064 | None:intergenic | 45.0% | |
| GACTTCCTTGAGAATCTGGT+TGG | + | chr7.4:1081929-1081948 | MS.gene22779:intron | 45.0% | |
| GGATCCATAGAACCTGCAAA+AGG | - | chr7.4:1083289-1083308 | None:intergenic | 45.0% | |
| GGATCCTTAAGAAAGGCTTC+GGG | - | chr7.4:1082012-1082031 | None:intergenic | 45.0% | |
| TATCTGCACCCTACACAGTT+GGG | + | chr7.4:1082257-1082276 | MS.gene22779:CDS | 45.0% | |
| TATTCTGATAAGGTGGAGGG+AGG | - | chr7.4:1081456-1081475 | None:intergenic | 45.0% | |
| TCGGGTTCAAACCTTGTGAA+TGG | - | chr7.4:1081994-1082013 | None:intergenic | 45.0% | |
| TCTATGGATCCAGCATCCAA+TGG | + | chr7.4:1083298-1083317 | MS.gene22779:CDS | 45.0% | |
| TGAACCCGAAGCCTTTCTTA+AGG | + | chr7.4:1082005-1082024 | MS.gene22779:intron | 45.0% | |
| TGGACTCGGATCCTTAAGAA+AGG | - | chr7.4:1082019-1082038 | None:intergenic | 45.0% | |
| TGGGGATTAATCCTACCAGT+AGG | + | chr7.4:1083367-1083386 | MS.gene22779:CDS | 45.0% | |
| TTATCTGCACCCTACACAGT+TGG | + | chr7.4:1082256-1082275 | MS.gene22779:CDS | 45.0% | |
| ! | GTTGGTTCAAGTGCAATGGT+GGG | + | chr7.4:1082316-1082335 | MS.gene22779:CDS | 45.0% |
| ! | TGCCAAACGGGTTTGCATAT+TGG | - | chr7.4:1081487-1081506 | None:intergenic | 45.0% |
| !! | CCACAGTTGGTTTGGAAGAA+TGG | + | chr7.4:1083847-1083866 | MS.gene22779:CDS | 45.0% |
| AAATAACGTGCCTGCTGCTG+TGG | + | chr7.4:1082435-1082454 | MS.gene22779:CDS | 50.0% | |
| ATGAGTTCAAACCGAGGCGA+AGG | - | chr7.4:1082780-1082799 | None:intergenic | 50.0% | |
| ATGCCAATTCCTCTGTGAGC+TGG | - | chr7.4:1083535-1083554 | None:intergenic | 50.0% | |
| CAGTAGGTGCAATTGTTGCG+AGG | + | chr7.4:1083383-1083402 | MS.gene22779:CDS | 50.0% | |
| CTCGCAACAATTGCACCTAC+TGG | - | chr7.4:1083385-1083404 | None:intergenic | 50.0% | |
| CTGCTGCTGTGGCAACAAAT+GGG | + | chr7.4:1082446-1082465 | MS.gene22779:CDS | 50.0% | |
| GAGGTCATGAGTTCAAACCG+AGG | - | chr7.4:1082786-1082805 | None:intergenic | 50.0% | |
| GCAGCAGGCACGTTATTTAG+AGG | - | chr7.4:1082433-1082452 | None:intergenic | 50.0% | |
| GGGATGGATGATCTCGCTAA+AGG | - | chr7.4:1081958-1081977 | None:intergenic | 50.0% | |
| TCCGGACTTCCTTGAGAATC+TGG | + | chr7.4:1081925-1081944 | MS.gene22779:intron | 50.0% | |
| TGCTGCTGTGGCAACAAATG+GGG | + | chr7.4:1082447-1082466 | MS.gene22779:CDS | 50.0% | |
| TTCCTCTGTGAGCTGGTATG+TGG | - | chr7.4:1083528-1083547 | None:intergenic | 50.0% | |
| ! | CATCGTCGGAAAGTACATGC+AGG | + | chr7.4:1081410-1081429 | MS.gene22779:CDS | 50.0% |
| ! | GGTTGGTTCAAGTGCAATGG+TGG | + | chr7.4:1082315-1082334 | MS.gene22779:CDS | 50.0% |
| ! | GTTCAAGTGCAATGGTGGGA+TGG | + | chr7.4:1082320-1082339 | MS.gene22779:CDS | 50.0% |
| !! | GGACTTGCTACTGTCCTTCT+TGG | + | chr7.4:1083475-1083494 | MS.gene22779:CDS | 50.0% |
| !!! | GTTTTGGGAATGCAAGCAGC+AGG | + | chr7.4:1083896-1083915 | MS.gene22779:CDS | 50.0% |
| CAGCAGGAGCAACGAATGCT+TGG | + | chr7.4:1083912-1083931 | MS.gene22779:CDS | 55.0% | |
| CCTGCTGCTGTGGCAACAAA+TGG | + | chr7.4:1082445-1082464 | MS.gene22779:CDS | 55.0% | |
| GGTGGCCAACCAGATTCTCA+AGG | - | chr7.4:1081937-1081956 | None:intergenic | 55.0% | |
| GTCCACATACCAGCTCACAG+AGG | + | chr7.4:1083523-1083542 | MS.gene22779:CDS | 55.0% | |
| TGCACCCTACACAGTTGGGT+GGG | + | chr7.4:1082261-1082280 | MS.gene22779:CDS | 55.0% | |
| ! | CCATTTGTTGCCACAGCAGC+AGG | - | chr7.4:1082448-1082467 | None:intergenic | 55.0% |
| ACAGTTGGGTGGGTGGGGAT+TGG | + | chr7.4:1082271-1082290 | MS.gene22779:CDS | 60.0% | |
| ACCCTACACAGTTGGGTGGG+TGG | + | chr7.4:1082264-1082283 | MS.gene22779:CDS | 60.0% | |
| CCCACCCACCCAACTGTGTA+GGG | - | chr7.4:1082268-1082287 | None:intergenic | 60.0% | |
| CCCTACACAGTTGGGTGGGT+GGG | + | chr7.4:1082265-1082284 | MS.gene22779:CDS | 60.0% | |
| CCTACACAGTTGGGTGGGTG+GGG | + | chr7.4:1082266-1082285 | MS.gene22779:CDS | 60.0% | |
| CTGCACCCTACACAGTTGGG+TGG | + | chr7.4:1082260-1082279 | MS.gene22779:CDS | 60.0% | |
| CCCCACCCACCCAACTGTGT+AGG | - | chr7.4:1082269-1082288 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 1081304 | 1084171 | 1081304 | ID=MS.gene22779 |
| chr7.4 | mRNA | 1081304 | 1084171 | 1081304 | ID=MS.gene22779.t1;Parent=MS.gene22779 |
| chr7.4 | exon | 1081304 | 1081522 | 1081304 | ID=MS.gene22779.t1.exon1;Parent=MS.gene22779.t1 |
| chr7.4 | CDS | 1081304 | 1081522 | 1081304 | ID=cds.MS.gene22779.t1;Parent=MS.gene22779.t1 |
| chr7.4 | exon | 1082223 | 1082628 | 1082223 | ID=MS.gene22779.t1.exon2;Parent=MS.gene22779.t1 |
| chr7.4 | CDS | 1082223 | 1082628 | 1082223 | ID=cds.MS.gene22779.t1;Parent=MS.gene22779.t1 |
| chr7.4 | exon | 1083296 | 1083582 | 1083296 | ID=MS.gene22779.t1.exon3;Parent=MS.gene22779.t1 |
| chr7.4 | CDS | 1083296 | 1083582 | 1083296 | ID=cds.MS.gene22779.t1;Parent=MS.gene22779.t1 |
| chr7.4 | exon | 1083785 | 1084094 | 1083785 | ID=MS.gene22779.t1.exon4;Parent=MS.gene22779.t1 |
| chr7.4 | CDS | 1083785 | 1084094 | 1083785 | ID=cds.MS.gene22779.t1;Parent=MS.gene22779.t1 |
| chr7.4 | exon | 1084167 | 1084171 | 1084167 | ID=MS.gene22779.t1.exon5;Parent=MS.gene22779.t1 |
| chr7.4 | CDS | 1084167 | 1084171 | 1084167 | ID=cds.MS.gene22779.t1;Parent=MS.gene22779.t1 |
| Gene Sequence |
| Protein sequence |
