AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene22906


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22906.t1 MTR_7g114550 93.907 279 16 1 1 279 7 284 0.0 551
MS.gene22906.t1 MTR_7g114550 92.473 93 7 0 299 391 367 459 3.03e-52 181
MS.gene22906.t1 MTR_7g114560 90.323 279 26 1 1 279 7 284 0.0 532
MS.gene22906.t1 MTR_7g114560 91.398 93 8 0 299 391 367 459 9.88e-52 179
MS.gene22906.t1 MTR_7g114490 82.437 279 48 1 1 279 7 284 9.98e-171 486
MS.gene22906.t1 MTR_7g114490 62.687 67 25 0 299 365 367 433 2.66e-22 99.0
MS.gene22906.t1 MTR_5g076700 82.143 280 48 2 1 279 7 285 9.65e-169 480
MS.gene22906.t1 MTR_5g076700 69.892 93 28 0 299 391 368 460 2.08e-37 141
MS.gene22906.t1 MTR_7g114520 78.292 281 58 3 1 279 8 287 4.42e-163 466
MS.gene22906.t1 MTR_7g114520 68.817 93 29 0 299 391 370 462 2.43e-35 135
MS.gene22906.t1 MTR_7g114470 77.500 280 61 2 1 279 8 286 4.82e-160 458
MS.gene22906.t1 MTR_7g114470 67.742 93 30 0 299 391 370 462 5.16e-37 140
MS.gene22906.t1 MTR_1g040315 49.282 418 179 6 1 391 6 417 4.43e-136 395
MS.gene22906.t1 MTR_1g040215 42.081 442 190 7 1 378 6 445 4.02e-122 361
MS.gene22906.t1 MTR_1g040320 46.040 404 188 6 1 376 6 407 5.77e-121 357
MS.gene22906.t1 MTR_1g040175 55.714 280 121 2 1 279 6 283 2.43e-111 333
MS.gene22906.t1 MTR_1g040175 42.391 92 52 1 301 391 367 458 1.13e-16 81.6
MS.gene22906.t1 MTR_1g040195 53.710 283 98 5 1 279 6 259 4.60e-99 301
MS.gene22906.t1 MTR_1g040195 50.515 97 44 2 299 391 340 436 2.16e-24 104
MS.gene22906.t1 MTR_1g081660 54.093 281 125 4 1 279 15 293 6.79e-98 299
MS.gene22906.t1 MTR_1g081660 48.101 79 41 0 299 377 374 452 1.10e-17 84.7
MS.gene22906.t1 MTR_7g114420 52.416 269 90 6 160 391 1 268 1.23e-83 256
MS.gene22906.t1 MTR_7g114500 79.452 146 30 0 1 146 7 152 3.89e-81 245
MS.gene22906.t1 MTR_3g051790 75.352 142 35 0 1 142 10 151 1.64e-71 222
MS.gene22906.t1 MTR_7g114510 72.143 140 37 2 141 279 7 145 2.70e-68 218
MS.gene22906.t1 MTR_7g114510 63.441 93 34 0 299 391 228 320 1.39e-31 122
MS.gene22906.t1 MTR_0042s0230 62.676 142 53 0 1 142 6 147 4.81e-62 197
MS.gene22906.t1 MTR_0502s0010 52.128 188 78 4 95 278 1 180 5.35e-56 184
MS.gene22906.t1 MTR_8g039950 64.228 123 44 0 1 123 6 128 2.42e-55 179
MS.gene22906.t1 MTR_3g098980 35.018 277 174 4 4 278 14 286 1.39e-50 176
MS.gene22906.t1 MTR_8g096530 32.857 280 179 6 2 277 5 279 1.16e-48 171
MS.gene22906.t1 MTR_7g027175 35.018 277 167 6 8 278 20 289 5.02e-48 169
MS.gene22906.t1 MTR_3g112180 32.168 286 177 7 7 283 14 291 5.05e-38 142
MS.gene22906.t1 MTR_4g055170 31.802 283 166 7 11 276 19 291 9.86e-38 142
MS.gene22906.t1 MTR_7g110610 31.387 274 147 7 3 264 4 248 6.23e-35 133
MS.gene22906.t1 MTR_1g053315 29.179 329 207 8 12 315 26 353 1.41e-34 133
MS.gene22906.t1 MTR_2g105330 30.627 271 180 5 11 278 10 275 1.56e-30 121
MS.gene22906.t1 MTR_3g465930 31.071 280 177 9 11 278 17 292 2.63e-30 121
MS.gene22906.t1 MTR_4g007540 38.728 173 102 3 36 208 34 202 1.37e-29 119
MS.gene22906.t1 MTR_2g064495 30.258 271 181 5 11 278 10 275 3.21e-29 118
MS.gene22906.t1 MTR_0042s0190 47.581 124 56 3 160 279 1 119 4.99e-29 114
MS.gene22906.t1 MTR_0042s0190 48.101 79 40 1 299 376 201 279 1.22e-20 91.7
MS.gene22906.t1 MTR_3g465910 31.655 278 175 9 11 278 17 289 2.57e-28 116
MS.gene22906.t1 MTR_8g075610 38.122 181 106 6 30 209 19 194 5.79e-28 114
MS.gene22906.t1 MTR_3g465990 31.469 286 165 13 11 278 17 289 1.71e-26 110
MS.gene22906.t1 MTR_3g465980 31.034 290 161 10 11 278 17 289 5.38e-25 106
MS.gene22906.t1 MTR_2g015430 29.310 232 154 5 54 279 53 280 1.77e-24 104
MS.gene22906.t1 MTR_3g465880 29.758 289 167 9 11 276 17 292 1.39e-23 102
MS.gene22906.t1 MTR_7g085930 27.526 287 183 9 11 278 13 293 1.61e-23 102
MS.gene22906.t1 MTR_3g051820 64.368 87 30 1 305 391 6 91 2.93e-23 93.2
MS.gene22906.t1 MTR_3g465950 29.371 286 170 10 11 276 17 290 9.70e-23 99.8
MS.gene22906.t1 MTR_6g053810 32.035 231 138 11 58 276 70 293 1.97e-22 99.0
MS.gene22906.t1 MTR_3g071320 25.872 344 220 9 3 321 4 337 2.02e-22 98.6
MS.gene22906.t1 MTR_7g114417 81.818 55 9 1 84 137 29 83 2.93e-22 90.1
MS.gene22906.t1 MTR_7g114417 91.667 36 3 0 1 36 7 42 5.33e-15 70.1
MS.gene22906.t1 MTR_7g084940 25.000 320 223 8 8 316 20 333 3.49e-22 98.2
MS.gene22906.t1 MTR_7g084910 27.273 253 171 7 24 268 37 284 8.71e-22 96.7
MS.gene22906.t1 MTR_3g465870 28.975 283 179 11 11 278 19 294 3.03e-21 95.1
MS.gene22906.t1 MTR_7g085990 30.851 188 123 5 10 194 8 191 3.10e-21 95.5
MS.gene22906.t1 MTR_0042s0190 48.101 79 40 1 299 376 136 214 4.05e-21 91.7
MS.gene22906.t1 MTR_7g056087 24.850 334 224 12 1 313 1 328 1.18e-20 93.6
MS.gene22906.t1 MTR_3g049150 26.855 283 180 10 12 278 10 281 1.76e-20 93.2
MS.gene22906.t1 MTR_5g090880 31.527 203 115 7 56 245 64 255 1.99e-20 93.2
MS.gene22906.t1 MTR_3g026950 26.408 284 184 8 12 278 10 285 2.04e-20 92.8
MS.gene22906.t1 MTR_4g013050 30.625 160 105 2 14 173 14 167 2.74e-20 92.0
MS.gene22906.t1 MTR_7g086000 25.850 294 180 11 1 270 1 280 6.60e-20 91.7
MS.gene22906.t1 MTR_4g127650 26.616 263 175 8 30 280 35 291 2.95e-19 89.4
MS.gene22906.t1 MTR_5g090810 27.863 262 154 9 2 245 8 252 7.35e-19 88.6
MS.gene22906.t1 MTR_5g090830 28.626 262 152 10 2 245 8 252 3.49e-18 86.3
MS.gene22906.t1 MTR_4g097090 32.164 171 110 4 12 179 17 184 1.48e-17 84.3
MS.gene22906.t1 MTR_5g084870 25.306 245 157 9 10 246 9 235 5.30e-17 82.8
MS.gene22906.t1 MTR_3g086020 27.000 200 130 7 4 201 5 190 3.94e-16 79.7
MS.gene22906.t1 MTR_5g026320 29.183 257 155 13 17 264 33 271 7.15e-16 79.3
MS.gene22906.t1 MTR_3g450690 29.442 197 121 3 56 245 69 254 8.15e-16 79.3
MS.gene22906.t1 MTR_8g079950 28.655 171 106 5 10 174 9 169 3.05e-15 77.4
MS.gene22906.t1 MTR_3g450710 28.241 216 134 4 40 245 46 250 4.41e-15 77.0
MS.gene22906.t1 MTR_3g035000 29.817 218 102 9 194 364 43 256 6.94e-15 75.1
MS.gene22906.t1 MTR_4g088765 45.946 74 40 0 1 74 6 79 1.29e-14 70.1
MS.gene22906.t1 MTR_3g101960 26.019 319 207 11 18 318 30 337 6.01e-14 73.6
MS.gene22906.t1 MTR_2g007880 24.221 289 180 12 11 288 24 284 8.54e-13 70.1
MS.gene22906.t1 MTR_8g467580 27.941 204 123 9 10 203 9 198 2.64e-12 68.6
MS.gene22906.t1 MTR_4g022800 24.000 275 182 9 18 279 25 285 2.70e-12 68.2
MS.gene22906.t1 MTR_3g102020 25.312 320 207 13 19 318 31 338 5.38e-12 67.4
MS.gene22906.t1 MTR_4g022720 23.443 273 180 10 18 279 25 279 6.01e-12 67.4
MS.gene22906.t1 MTR_4g022670 23.571 280 177 10 18 279 25 285 6.67e-12 67.0
MS.gene22906.t1 MTR_3g100150 26.950 141 100 1 43 183 49 186 1.12e-11 66.6
MS.gene22906.t1 MTR_2g036780 26.744 172 122 2 12 183 20 187 1.37e-11 66.2
MS.gene22906.t1 MTR_4g094828 24.910 277 183 8 19 286 31 291 1.85e-11 65.9
MS.gene22906.t1 MTR_7g026860 23.827 277 184 9 18 281 25 287 2.43e-11 65.5
MS.gene22906.t1 MTR_4g022290 27.473 182 109 5 18 191 31 197 2.76e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22906.t1 AT3G03480 43.182 440 177 12 2 374 17 450 2.00e-100 305
MS.gene22906.t1 AT5G17540 38.646 458 210 12 2 391 7 461 8.96e-95 291
MS.gene22906.t1 AT3G48720 33.096 281 181 5 2 279 7 283 6.61e-49 171
MS.gene22906.t1 AT5G63560 34.286 280 171 5 4 279 9 279 5.32e-46 163
MS.gene22906.t1 AT5G41040 34.286 280 175 4 4 278 33 308 7.12e-46 164
MS.gene22906.t1 AT5G41040 34.286 280 175 4 4 278 17 292 7.62e-46 163
MS.gene22906.t1 AT1G27620 35.018 277 156 8 8 273 13 276 1.02e-38 144
MS.gene22906.t1 AT3G62160 30.986 284 174 7 2 279 3 270 6.91e-32 125
MS.gene22906.t1 AT5G48930 30.909 275 175 7 11 278 10 276 2.24e-29 118
MS.gene22906.t1 AT5G57840 32.130 277 168 7 4 270 3 269 4.04e-28 115
MS.gene22906.t1 AT1G03390 32.517 286 164 11 8 274 21 296 3.37e-27 112
MS.gene22906.t1 AT2G25150 28.283 297 156 10 10 276 19 288 4.98e-27 112
MS.gene22906.t1 AT3G47170 26.144 306 184 10 2 276 10 304 6.06e-25 106
MS.gene22906.t1 AT5G07080 28.276 290 183 8 2 276 12 291 1.82e-24 104
MS.gene22906.t1 AT1G31490 30.830 253 141 10 25 264 29 260 9.44e-24 102
MS.gene22906.t1 AT1G65450 29.779 272 170 10 24 285 39 299 6.60e-23 100
MS.gene22906.t1 AT2G23510 28.322 286 180 10 4 276 13 286 9.62e-23 99.8
MS.gene22906.t1 AT2G19070 32.941 170 111 2 30 199 29 195 4.69e-22 97.8
MS.gene22906.t1 AT1G28680 29.699 266 167 10 25 279 27 283 8.55e-22 96.7
MS.gene22906.t1 AT1G28680 29.699 266 167 10 25 279 27 283 1.12e-21 96.7
MS.gene22906.t1 AT2G40230 28.571 287 180 10 8 279 9 285 4.99e-21 94.7
MS.gene22906.t1 AT3G26040 24.638 276 165 9 10 270 9 256 2.02e-18 87.0
MS.gene22906.t1 AT1G32910 30.392 204 125 5 45 245 56 245 2.30e-17 84.0
MS.gene22906.t1 AT4G31910 26.545 275 175 9 25 276 32 302 2.61e-17 83.6
MS.gene22906.t1 AT1G78990 29.858 211 137 4 37 245 45 246 3.79e-17 83.2
MS.gene22906.t1 AT5G16410 28.378 222 141 8 59 275 91 299 1.75e-16 81.3
MS.gene22906.t1 AT1G24430 30.516 213 111 10 39 243 42 225 3.31e-16 80.5
MS.gene22906.t1 AT1G24420 30.634 284 168 10 10 284 11 274 3.65e-16 80.1
MS.gene22906.t1 AT1G24420 30.634 284 168 10 10 284 11 274 3.65e-16 80.1
MS.gene22906.t1 AT4G15390 25.185 270 178 8 4 266 8 260 4.72e-16 79.7
MS.gene22906.t1 AT4G15390 25.185 270 178 8 4 266 8 260 4.72e-16 79.7
MS.gene22906.t1 AT5G23970 29.412 170 110 3 10 179 9 168 3.77e-15 77.0
MS.gene22906.t1 AT3G30280 25.714 245 159 7 4 243 6 232 7.60e-15 76.3
MS.gene22906.t1 AT5G47950 28.492 179 115 5 4 179 6 174 2.53e-13 71.6
MS.gene22906.t1 AT5G07870 24.834 302 190 14 4 278 11 302 3.76e-12 68.2
MS.gene22906.t1 AT5G07860 25.364 343 209 15 4 316 11 336 1.44e-11 66.2

Find 0 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTATATATAAAGAAAATATA+TGG + 51732:5676-5695 MS.gene22906:intron 10.0%
!! TATTATATTTATATTATGAC+AGG + 51732:6293-6312 MS.gene22906:intron 10.0%
!!! AAACTCTAAAAAAATATATA+TGG - 51732:4399-4418 None:intergenic 10.0%
!!! TTATAAGAATAATGTTATTT+TGG + 51732:5744-5763 MS.gene22906:intron 10.0%
!!! TTTGATTTTGATTAAATTAT+AGG - 51732:5867-5886 None:intergenic 10.0%
!! AATCAAATTATAGGAAAAAA+CGG + 51732:5194-5213 MS.gene22906:intron 15.0%
!! ACATATATACTCAAAAAAAA+AGG + 51732:5019-5038 MS.gene22906:intron 15.0%
!! TATTTCAAATACCATAAAAT+TGG - 51732:5082-5101 None:intergenic 15.0%
!! TCAATCTGATTATAATATAT+TGG - 51732:6087-6106 None:intergenic 15.0%
!! TCTTTATCTAATCAAATTAT+AGG + 51732:5185-5204 MS.gene22906:intron 15.0%
!! TGTAAATATAAAAACGTTAA+TGG - 51732:5157-5176 None:intergenic 15.0%
!! TTAAATATAGTCATATTTGT+AGG - 51732:4287-4306 None:intergenic 15.0%
!!! AAAAACCTCTTTTATAATTA+GGG + 51732:5384-5403 MS.gene22906:intron 15.0%
!!! AAATATAAGTATAGTTTGTT+AGG + 51732:5815-5834 MS.gene22906:intron 15.0%
!!! ATTAGCTAATTTTTAGATTT+TGG - 51732:4559-4578 None:intergenic 15.0%
!!! CTTATTAAATTGTTTTGAAA+AGG + 51732:4902-4921 MS.gene22906:intron 15.0%
!!! CTTTTCAAAACAATTTAATA+AGG - 51732:4904-4923 None:intergenic 15.0%
!!! GTCAATTTTTAAAAAAAGTA+AGG - 51732:5972-5991 None:intergenic 15.0%
!!! TAAAAACCTCTTTTATAATT+AGG + 51732:5383-5402 MS.gene22906:intron 15.0%
!!! TAAAGAAAATATATGGTTTT+TGG + 51732:5683-5702 MS.gene22906:intron 15.0%
!!! TTGAAAAATATTTTTTGACA+AGG + 51732:4989-5008 MS.gene22906:intron 15.0%
!! AAGATGTATTCAATACAATT+TGG + 51732:4525-4544 MS.gene22906:intron 20.0%
!! ATCAAATTATAGGAAAAAAC+GGG + 51732:5195-5214 MS.gene22906:intron 20.0%
!! ATTAACGCAATAAAAAAAAG+CGG + 51732:5936-5955 MS.gene22906:intron 20.0%
!! CAAAATCACAATAAAAGATA+AGG - 51732:5615-5634 None:intergenic 20.0%
!! CTAAAAATTAGCTAATAATG+AGG + 51732:4563-4582 MS.gene22906:intron 20.0%
!! GAAAAAAATAGTAAAAATCG+AGG - 51732:4377-4396 None:intergenic 20.0%
!! TCAAAGTTTAATAGCATAAT+TGG - 51732:5724-5743 None:intergenic 20.0%
!! TTCAATCATATAGATAACTT+TGG - 51732:4456-4475 None:intergenic 20.0%
!! TTGTAAACTTGTAATCAATT+CGG - 51732:6244-6263 None:intergenic 20.0%
!!! ATTCATATGTTTTCTTCAAA+TGG - 51732:6159-6178 None:intergenic 20.0%
!!! CAAATTGATATCCAATTTTA+TGG + 51732:5068-5087 MS.gene22906:intron 20.0%
!!! GTTTCTCTAAAAAAAAATGA+TGG - 51732:4485-4504 None:intergenic 20.0%
!!! TTTAAAGCATGTGAAATATA+GGG - 51732:6062-6081 None:intergenic 20.0%
! AAATAAGGTAAGTGCATATA+AGG - 51732:6129-6148 None:intergenic 25.0%
! AATAAGGTAAGTGCATATAA+GGG - 51732:6128-6147 None:intergenic 25.0%
! ATAAAAGATAAGGTTAGAGT+TGG - 51732:5605-5624 None:intergenic 25.0%
! ATCTTATGGTTATTAAGGAA+CGG + 51732:6931-6950 MS.gene22906:intron 25.0%
! ATTGTTCGTATAATTCAAGA+TGG - 51732:6509-6528 None:intergenic 25.0%
! CAAACATTAACTTATTGATC+TGG + 51732:5303-5322 MS.gene22906:intron 25.0%
! TCAATATGTACTTCACAAAT+TGG + 51732:4810-4829 MS.gene22906:intron 25.0%
! TGTTTATTACTATCCATTTG+CGG + 51732:3880-3899 MS.gene22906:CDS 25.0%
! TTCCTTAATAACCATAAGAT+CGG - 51732:6931-6950 None:intergenic 25.0%
!! AAAATTGACGTATTTTCGTA+CGG + 51732:5983-6002 MS.gene22906:intron 25.0%
!! AAGGGCAAAACTTTTTAAAT+GGG - 51732:6110-6129 None:intergenic 25.0%
!! GATAATAGTTTAACTTCACA+AGG - 51732:3737-3756 None:intergenic 25.0%
!! GTTTAAAGCATGTGAAATAT+AGG - 51732:6063-6082 None:intergenic 25.0%
!! TAAGGGCAAAACTTTTTAAA+TGG - 51732:6111-6130 None:intergenic 25.0%
!!! CGAAGATTTTTTTATCACAT+GGG - 51732:4716-4735 None:intergenic 25.0%
!!! GTCATTTTATGCTATTAACA+TGG - 51732:4252-4271 None:intergenic 25.0%
AACTTGTAATCAATTCGGTT+TGG - 51732:6239-6258 None:intergenic 30.0%
ATGAATTGGAACCATACAAT+GGG + 51732:6351-6370 MS.gene22906:CDS 30.0%
ATGAGTTCATGAGCTTAATT+TGG - 51732:4763-4782 None:intergenic 30.0%
ATTAAAAGCTGAAGTTACAG+AGG + 51732:6887-6906 MS.gene22906:intron 30.0%
CACATTTAAGAACCTTAACA+GGG - 51732:3844-3863 None:intergenic 30.0%
CTCCGTTTATATTCTTGTAT+GGG - 51732:7103-7122 None:intergenic 30.0%
GGTGTTTATTTACAACTGTA+AGG + 51732:6952-6971 MS.gene22906:intron 30.0%
GTCCCATACAAGAATATAAA+CGG + 51732:7098-7117 MS.gene22906:CDS 30.0%
GTTTATTACTATCCATTTGC+GGG + 51732:3881-3900 MS.gene22906:CDS 30.0%
TCGAACCCTAATTATAAAAG+AGG - 51732:5392-5411 None:intergenic 30.0%
TCTCCGTTTATATTCTTGTA+TGG - 51732:7104-7123 None:intergenic 30.0%
TCTTCTTCCTTAATGGTATT+TGG - 51732:6540-6559 None:intergenic 30.0%
TGACGATAGATAAATATGAC+AGG - 51732:3797-3816 None:intergenic 30.0%
TGAGTTCATGAGCTTAATTT+GGG - 51732:4762-4781 None:intergenic 30.0%
! ATCTTATCGCTTCATGTTTT+TGG + 51732:6661-6680 MS.gene22906:CDS 30.0%
! TAAACCACTAAGTTTTTGCA+AGG + 51732:4835-4854 MS.gene22906:intron 30.0%
! TTTTCCTTGCAAAAACTTAG+TGG - 51732:4842-4861 None:intergenic 30.0%
! TTTTTCGCCAAATACCATTA+AGG + 51732:6530-6549 MS.gene22906:CDS 30.0%
!! AACTCGTTTATTTTCAACGT+TGG - 51732:4787-4806 None:intergenic 30.0%
!!! GCGAAGATTTTTTTATCACA+TGG - 51732:4717-4736 None:intergenic 30.0%
AAACCTCTTCATATCTTCAG+AGG - 51732:7156-7175 None:intergenic 35.0%
AACCTCTTCATATCTTCAGA+GGG - 51732:7155-7174 None:intergenic 35.0%
AAGGTAGACATCACAAAACT+AGG - 51732:7233-7252 None:intergenic 35.0%
ACGCAATAAAAAAAAGCGGA+CGG + 51732:5940-5959 MS.gene22906:intron 35.0%
ACTGTACCAATATGCAACAT+AGG + 51732:6030-6049 MS.gene22906:intron 35.0%
AGCAGTATCTTCTTCCTTAA+TGG - 51732:6547-6566 None:intergenic 35.0%
AGCATGTGAAATATAGGGTT+TGG - 51732:6057-6076 None:intergenic 35.0%
ATGACGTAAAATTCATCGAG+AGG + 51732:4338-4357 MS.gene22906:intron 35.0%
ATTCTTGTATGGGACGATAT+AGG - 51732:7093-7112 None:intergenic 35.0%
CATGAATTGGAACCATACAA+TGG + 51732:6350-6369 MS.gene22906:CDS 35.0%
CATTGTATGGTTCCAATTCA+TGG - 51732:6352-6371 None:intergenic 35.0%
GATGTAACACTTGATCAGTT+TGG + 51732:3983-4002 MS.gene22906:CDS 35.0%
GCACATTTAAGAACCTTAAC+AGG - 51732:3845-3864 None:intergenic 35.0%
TCAAATGGAGCATGGAAATA+AGG - 51732:6144-6163 None:intergenic 35.0%
TCTGACATAGATGATCAAGA+AGG + 51732:3755-3774 MS.gene22906:CDS 35.0%
TTACCGTAATATCCAACAAG+TGG - 51732:6783-6802 None:intergenic 35.0%
TTTCTATGCACATGACTTCA+TGG - 51732:4425-4444 None:intergenic 35.0%
TTTGGACCTATGTTGCATAT+TGG - 51732:6039-6058 None:intergenic 35.0%
TTTGTAGAGACAAGCAAATG+AGG - 51732:4613-4632 None:intergenic 35.0%
! AGTTTAACTTCACAAGGAGT+GGG - 51732:3731-3750 None:intergenic 35.0%
! CTCTAAAGAAGAAAGATCGA+TGG - 51732:6578-6597 None:intergenic 35.0%
! TAGTTTAACTTCACAAGGAG+TGG - 51732:3732-3751 None:intergenic 35.0%
! TGTTTTCTTCAAATGGAGCA+TGG - 51732:6152-6171 None:intergenic 35.0%
!! GTGATGTTGATTTAGGATCT+TGG + 51732:5325-5344 MS.gene22906:intron 35.0%
!! TGATCTGGTGATGTTGATTT+AGG + 51732:5318-5337 MS.gene22906:intron 35.0%
AAACCCATTTGGTTATGCAG+TGG + 51732:6851-6870 MS.gene22906:CDS 40.0%
AAAGAGTTGGATGAGATGCT+TGG + 51732:7179-7198 MS.gene22906:CDS 40.0%
AACTCCACTGCATAACCAAA+TGG - 51732:6858-6877 None:intergenic 40.0%
AATGAACATGACACCTTCAC+CGG - 51732:3951-3970 None:intergenic 40.0%
ACTCCACTGCATAACCAAAT+GGG - 51732:6857-6876 None:intergenic 40.0%
AGAGGAATACATGCATTCTG+TGG + 51732:6905-6924 MS.gene22906:intron 40.0%
AGGCTCTCAGAAGTGAATTT+CGG + 51732:7005-7024 MS.gene22906:CDS 40.0%
AGTACGTATGCTTCAGAGTT+TGG - 51732:5425-5444 None:intergenic 40.0%
ATCCATTTGCGGGAAGAATT+AGG + 51732:3891-3910 MS.gene22906:CDS 40.0%
ATTTGGTTATGCAGTGGAGT+TGG + 51732:6857-6876 MS.gene22906:CDS 40.0%
CAATAAAAAAAAGCGGACGG+TGG + 51732:5943-5962 MS.gene22906:intron 40.0%
CATTCAACCTGTGTGGAATA+GGG + 51732:6443-6462 MS.gene22906:CDS 40.0%
CTCAGAAGTGAATTTCGGAT+GGG + 51732:7010-7029 MS.gene22906:CDS 40.0%
GAACATCGTATAGGAGTTGA+TGG - 51732:4039-4058 None:intergenic 40.0%
GAAGAGGTTTGCAAAAGAGT+TGG + 51732:7166-7185 MS.gene22906:CDS 40.0%
GAGACAATTCATGACTGCAT+GGG + 51732:6389-6408 MS.gene22906:CDS 40.0%
GGCCGATCTTATGGTTATTA+AGG + 51732:6926-6945 MS.gene22906:intron 40.0%
GGGCGTGATGTTACATAATT+TGG - 51732:4696-4715 None:intergenic 40.0%
GTGGAATAGGGAGATTCTAA+TGG + 51732:6455-6474 MS.gene22906:CDS 40.0%
GTTAACAATTCGCCACTTGT+TGG + 51732:6768-6787 MS.gene22906:intron 40.0%
TATTGTATGTGCATCCGGTA+CGG - 51732:5466-5485 None:intergenic 40.0%
TCAGAAGTGAATTTCGGATG+GGG + 51732:7011-7030 MS.gene22906:CDS 40.0%
TCCATTTGCGGGAAGAATTA+GGG + 51732:3892-3911 MS.gene22906:CDS 40.0%
TCTCAGAAGTGAATTTCGGA+TGG + 51732:7009-7028 MS.gene22906:CDS 40.0%
TCTTCAGAGGGCAAACAAAT+TGG - 51732:7143-7162 None:intergenic 40.0%
TGAACCTGTATCTGTCGAAT+GGG - 51732:4088-4107 None:intergenic 40.0%
TGAAGCGATAAGATCGAATG+TGG - 51732:6655-6674 None:intergenic 40.0%
TGAATTTCGGATGGGGTAAA+GGG + 51732:7018-7037 MS.gene22906:CDS 40.0%
TGAGACAATTCATGACTGCA+TGG + 51732:6388-6407 MS.gene22906:CDS 40.0%
TTGAACCTGTATCTGTCGAA+TGG - 51732:4089-4108 None:intergenic 40.0%
! AAGCTTTGTGGAAACCCATT+TGG + 51732:6840-6859 MS.gene22906:CDS 40.0%
! ACGAGTATTGTATGTGCATC+CGG - 51732:5471-5490 None:intergenic 40.0%
! CTTTCTCTACCATTGATGGT+TGG - 51732:3820-3839 None:intergenic 40.0%
! GTACTGATGTGATTGAAGCT+TGG - 51732:4954-4973 None:intergenic 40.0%
! TCGCCACTTGTTGGATATTA+CGG + 51732:6777-6796 MS.gene22906:intron 40.0%
!! AAGTTGATGGTGGATTGTAC+CGG + 51732:3929-3948 MS.gene22906:CDS 40.0%
!! AGTTGATGGAAGCAATGGAA+TGG - 51732:4025-4044 None:intergenic 40.0%
!! ATAGGAGTTGATGGAAGCAA+TGG - 51732:4030-4049 None:intergenic 40.0%
!! ATCACAAAACTAGGAGCACT+CGG - 51732:7224-7243 None:intergenic 40.0%
!! CACAAAAGCATTGCAGTTAG+AGG + 51732:6692-6711 MS.gene22906:CDS 40.0%
!! GGGATCTATTGACTTTGAGT+TGG - 51732:4742-4761 None:intergenic 40.0%
!! TCGATAATTTGTTCTGAGCC+TGG - 51732:4061-4080 None:intergenic 40.0%
!!! CACTCGGTGTAAGATGATTT+TGG - 51732:7208-7227 None:intergenic 40.0%
AGAATCTCCCTATTCCACAC+AGG - 51732:6453-6472 None:intergenic 45.0%
AGATGGTTGCATGTAATGCG+TGG - 51732:6492-6511 None:intergenic 45.0%
AGTGCTCCTCTTCATGTCTT+AGG + 51732:5353-5372 MS.gene22906:intron 45.0%
ATTGTATGTGCATCCGGTAC+GGG - 51732:5465-5484 None:intergenic 45.0%
ATTTGCGGGAAGAATTAGGG+AGG + 51732:3895-3914 MS.gene22906:CDS 45.0%
CAACTCCTATACGATGTTCC+AGG + 51732:4040-4059 MS.gene22906:CDS 45.0%
CCATTCAACCTGTGTGGAAT+AGG + 51732:6442-6461 MS.gene22906:CDS 45.0%
CTATCGTCACCAACCATCAA+TGG + 51732:3808-3827 MS.gene22906:CDS 45.0%
CTCACTCCTAAGACATGAAG+AGG - 51732:5362-5381 None:intergenic 45.0%
GAAGAATTAGGGAGGGTGAT+GGG + 51732:3903-3922 MS.gene22906:CDS 45.0%
GAATTTCGGATGGGGTAAAG+GGG + 51732:7019-7038 MS.gene22906:CDS 45.0%
GGGTCTTTCTCTACCATTGA+TGG - 51732:3824-3843 None:intergenic 45.0%
GGTAGAGAAAGACCCTGTTA+AGG + 51732:3829-3848 MS.gene22906:CDS 45.0%
GGTTCATAGTGGCCATGAAT+TGG + 51732:6337-6356 MS.gene22906:CDS 45.0%
GTACCGTATCCACTACGTTA+CGG - 51732:6012-6031 None:intergenic 45.0%
GTGAATTTCGGATGGGGTAA+AGG + 51732:7017-7036 MS.gene22906:CDS 45.0%
TACCGTATCCACTACGTTAC+GGG - 51732:6011-6030 None:intergenic 45.0%
TCCCTAATTCTTCCCGCAAA+TGG - 51732:3896-3915 None:intergenic 45.0%
TGATGGAAGCAATGGAATGG+AGG - 51732:4022-4041 None:intergenic 45.0%
TTTGCGGGAAGAATTAGGGA+GGG + 51732:3896-3915 MS.gene22906:CDS 45.0%
! AAACGATAAAGCACCCGTAC+CGG + 51732:5449-5468 MS.gene22906:intron 45.0%
! AACTGTTTTGCTTACCCAGC+TGG + 51732:6801-6820 MS.gene22906:intron 45.0%
! ATGGTGGAGTTGCAAAAGGT+GGG + 51732:7045-7064 MS.gene22906:CDS 45.0%
! CCTATTCCACACAGGTTGAA+TGG - 51732:6445-6464 None:intergenic 45.0%
! GTGCATTGACGAAGGTGAAA+TGG - 51732:6633-6652 None:intergenic 45.0%
! GTGTATGGTGGAGTTGCAAA+AGG + 51732:7041-7060 MS.gene22906:CDS 45.0%
! TATGGTGGAGTTGCAAAAGG+TGG + 51732:7044-7063 MS.gene22906:CDS 45.0%
! TCTCAGATTTGACTCGTGCT+AGG + 51732:6985-7004 MS.gene22906:CDS 45.0%
! TGCCCTCTGAAGATATGAAG+AGG + 51732:7150-7169 MS.gene22906:CDS 45.0%
! TTCCACACAGGTTGAATGGA+AGG - 51732:6441-6460 None:intergenic 45.0%
!! TACCCGTAACGTAGTGGATA+CGG + 51732:6006-6025 MS.gene22906:intron 45.0%
CAGCTGCATCACCCATTGTA+TGG - 51732:6365-6384 None:intergenic 50.0%
CATACAATGGGTGATGCAGC+TGG + 51732:6363-6382 MS.gene22906:CDS 50.0%
CATAGCTGCTCTTCGTCTCT+TGG + 51732:6605-6624 MS.gene22906:CDS 50.0%
CATGACTGCATGGGCAGAAA+TGG + 51732:6398-6417 MS.gene22906:CDS 50.0%
CCTGTATCTGTCGAATGGGA+CGG - 51732:4084-4103 None:intergenic 50.0%
CTGAGCCTGGAACATCGTAT+AGG - 51732:4048-4067 None:intergenic 50.0%
GCAGTTAGAGGCAGATGAAG+AGG + 51732:6704-6723 MS.gene22906:CDS 50.0%
GCATTCTGTGGCCGATCTTA+TGG + 51732:6917-6936 MS.gene22906:intron 50.0%
GGAAGAATTAGGGAGGGTGA+TGG + 51732:3902-3921 MS.gene22906:CDS 50.0%
GGGACGATATAGGTTACTCC+AGG - 51732:7083-7102 None:intergenic 50.0%
GGTTGCATGTAATGCGTGGA+GGG - 51732:6488-6507 None:intergenic 50.0%
GTCCTTCCATTCAACCTGTG+TGG + 51732:6436-6455 MS.gene22906:CDS 50.0%
TCACACGTCTCAAGTGTGGT+GGG + 51732:6316-6335 MS.gene22906:CDS 50.0%
TGGTGGAGTTGCAAAAGGTG+GGG + 51732:7046-7065 MS.gene22906:CDS 50.0%
TGGTTGCATGTAATGCGTGG+AGG - 51732:6489-6508 None:intergenic 50.0%
! CGAATGTGGTGCATTGACGA+AGG - 51732:6641-6660 None:intergenic 50.0%
!! ATGGTGGATTGTACCGGTGA+AGG + 51732:3935-3954 MS.gene22906:CDS 50.0%
!! CAAGTGTGGTGGGTTCATAG+TGG + 51732:6326-6345 MS.gene22906:CDS 50.0%
ACCACTGCAGCGAAGCTTTG+TGG + 51732:6828-6847 MS.gene22906:CDS 55.0%
CAGGTCACACGTCTCAAGTG+TGG + 51732:6312-6331 MS.gene22906:intron 55.0%
CCGTCCCATTCGACAGATAC+AGG + 51732:4081-4100 MS.gene22906:CDS 55.0%
GTACGGTACCCGTAACGTAG+TGG + 51732:6000-6019 MS.gene22906:intron 55.0%
GTCACACGTCTCAAGTGTGG+TGG + 51732:6315-6334 MS.gene22906:CDS 55.0%
TCCACAAAGCTTCGCTGCAG+TGG - 51732:6832-6851 None:intergenic 55.0%
! GGATGGGGTAAAGGGGTGTA+TGG + 51732:7026-7045 MS.gene22906:CDS 55.0%
! TGGGGTAAAGGGGTGTATGG+TGG + 51732:7029-7048 MS.gene22906:CDS 55.0%
!! TGATGGGCGCAAGTTGATGG+TGG + 51732:3919-3938 MS.gene22906:CDS 55.0%
CTGGTGGCACCAACTCTGGT+TGG - 51732:3703-3722 None:intergenic 60.0%
GAGTCGTCAATGCACGCTCG+AGG + 51732:6739-6758 MS.gene22906:intron 60.0%
GCATGGGCAGAAATGGCTCG+AGG + 51732:6405-6424 MS.gene22906:CDS 60.0%
GGAGTTGCAAAAGGTGGGGC+TGG + 51732:7050-7069 MS.gene22906:CDS 60.0%
TCACAAGGAGTGGGTGCAGC+TGG - 51732:3722-3741 None:intergenic 60.0%
! GGTGGGGCTGGAACTTTTCC+TGG + 51732:7062-7081 MS.gene22906:CDS 60.0%
!! GGGTGATGGGCGCAAGTTGA+TGG + 51732:3916-3935 MS.gene22906:CDS 60.0%
CAAGGAGTGGGTGCAGCTGG+TGG - 51732:3719-3738 None:intergenic 65.0%
GCAGCTGGTGGCACCAACTC+TGG - 51732:3707-3726 None:intergenic 65.0%
! CTGCAGTGGTGACGCCAGCT+GGG - 51732:6818-6837 None:intergenic 65.0%
!! GCGGAGGTGCCAACCAGAGT+TGG + 51732:3691-3710 MS.gene22906:CDS 65.0%
! GCTGCAGTGGTGACGCCAGC+TGG - 51732:6819-6838 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
51732 gene 3680 7256 3680 ID=MS.gene22906
51732 mRNA 3680 7256 3680 ID=MS.gene22906.t1;Parent=MS.gene22906
51732 exon 3680 4102 3680 ID=MS.gene22906.t1.exon1;Parent=MS.gene22906.t1
51732 CDS 3680 4102 3680 ID=cds.MS.gene22906.t1;Parent=MS.gene22906.t1
51732 exon 6315 6725 6315 ID=MS.gene22906.t1.exon2;Parent=MS.gene22906.t1
51732 CDS 6315 6725 6315 ID=cds.MS.gene22906.t1;Parent=MS.gene22906.t1
51732 exon 6820 6878 6820 ID=MS.gene22906.t1.exon3;Parent=MS.gene22906.t1
51732 CDS 6820 6878 6820 ID=cds.MS.gene22906.t1;Parent=MS.gene22906.t1
51732 exon 6974 7256 6974 ID=MS.gene22906.t1.exon4;Parent=MS.gene22906.t1
51732 CDS 6974 7256 6974 ID=cds.MS.gene22906.t1;Parent=MS.gene22906.t1
Gene Sequence

>MS.gene22906

ATGTTCACAGTGCGGAGGTGCCAACCAGAGTTGGTGCCACCAGCTGCACCCACTCCTTGTGAAGTTAAACTATTATCTGACATAGATGATCAAGAAGGTATGCGTTTCAATAGTCCTGTCATATTTATCTATCGTCACCAACCATCAATGGTAGAGAAAGACCCTGTTAAGGTTCTTAAATGTGCACTCTCAAAAACACTTGTTTATTACTATCCATTTGCGGGAAGAATTAGGGAGGGTGATGGGCGCAAGTTGATGGTGGATTGTACCGGTGAAGGTGTCATGTTCATTGAAGCTGAAGCTGATGTAACACTTGATCAGTTTGGTGATGCTCTACATCCTCCATTCCATTGCTTCCATCAACTCCTATACGATGTTCCAGGCTCAGAACAAATTATCGACCGTCCCATTCGACAGATACAGGTTCAATTATATTAATTATAAGTTTTTTTTTCACAAAAATAAACAATATTCATTCATTCATAATTAACGACAGAGTACGTCGATACAATATAAATCAAAAGTCGCTAAAAACAAAAAAGATGAATCTGCGAACAAACTCACGATATCCATGTTAATAGCATAAAATGACAGAGTACATATGCCTACAAATATGACTATATTTAAGAATATTCATGTTTTCAAATCTGCAACGTAGATGACGTAAAATTCATCGAGAGGTTTTACATATCAACCTCGATTTTTACTATTTTTTTCCATATATATTTTTTTAGAGTTTTTTCCATGAAGTCATGTGCATAGAAAAAAAAAATCCAAAGTTATCTATATGATTGAAAAGATTCCATCATTTTTTTTTAGAGAAACATACTTATAACTTTTCATTCAAGATGTATTCAATACAATTTGGTATTTTAACCAAAATCTAAAAATTAGCTAATAATGAGGTTGCTGTATCTAAATGATGAACAACCTCATTTGCTTGTCTCTACAAACTCAACACTTGAGTTTCATAAAATTTCTTGAAGAGAGTTTTACAATTTTGAATAATAATTCCAAATTATGTAACATCACGCCCATGTGATAAAAAAATCTTCGCATCCAACTCAAAGTCAATAGATCCCAAATTAAGCTCATGAACTCATTCCAACGTTGAAAATAAACGAGTTTCTTCAATATGTACTTCACAAATTGGACTAAACCACTAAGTTTTTGCAAGGAAAAAAACACTATGTTTGTCTCTAATACACATACATATTCTAACCTTATTAAATTGTTTTGAAAAGGAAGCATCAATGTTGCATTTGTATCATCCAAGCTTCAATCACATCAGTACAATATTATGAGAAAGTTGAAAAATATTTTTTGACAAGGACTTAAAACATATATACTCAAAAAAAAAGGACTTAAAACATATAAACTCTTAAAAACAAATTGATATCCAATTTTATGGTATTTGAAATAAAAAAAAAGAGCTTTTGTATAATCATTTTTTCTACTAATTTTAATTTACTCTCCATTAACGTTTTTATATTTACAGTTGTTATTCTTTATCTAATCAAATTATAGGAAAAAACGGGAATGTATTATGAAAAATATTAACATTAGACAAATATATGCACTAAAATAATATACACGTACGAGAGTTTGAGAAAAACAAACACACAAACATTAACTTATTGATCTGGTGATGTTGATTTAGGATCTTGGAGTGAAGTGCTCCTCTTCATGTCTTAGGAGTGAGTTAAAAACCTCTTTTATAATTAGGGTTCGAATTTTAATGTCCAAACTCTGAAGCATACGTACTTCTAAAACGATAAAGCACCCGTACCGGATGCACATACAATACTCGTGATACTGTTTTTGCTCAGTATTGTATTGTGAGTGAAATTTGTGACATTCTCTTATATAATAATATGATAATATAATATTATTTGTGAATTTGAGTTTCTTTGTCGTTGTAACCAACTCTAACCTTATCTTTTATTGTGATTTTGTTATTGTGAATTGAAGAATATATATTTTCATGTTATCTATACTATATATAAAGAAAATATATGGTTTTTGGTTGACTTTTTCATTTCCAATTATGCTATTAAACTTTGATTATAAGAATAATGTTATTTTGGTGCTGTTATTCAAAAAATAAGATTTGTTATATTGTTGTTATCATTGAAAAATATAAGTATAGTTTGTTAGGATACAAGTGCAAAATATATTACTATACCTATAATTTAATCAAAATCAAAATAATTTTAATCAAAATTTTATTAAAAACATTTTTCATAATTTATACGCATTAACGCAATAAAAAAAAGCGGACGGTGGATACCTTACTTTTTTTAAAAATTGACGTATTTTCGTACGGTACCCGTAACGTAGTGGATACGGTACTGTACCAATATGCAACATAGGTCCAAACCCTATATTTCACATGCTTTAAACACCAATATATTATAATCAGATTGACCCATTTAAAAAGTTTTGCCCTTATATGCACTTACCTTATTTCCATGCTCCATTTGAAGAAAACATATGAATTCTTACAGTTTCAAACAATTACTTGAATTTTGTACATGTTAGTGTTAATTACATATGCCAAACCGAATTGATTACAAGTTTACAACATGCATAGATAGATATATCTTTACTTAATATTATATTTATATTATGACAGGTCACACGTCTCAAGTGTGGTGGGTTCATAGTGGCCATGAATTGGAACCATACAATGGGTGATGCAGCTGGTTTGAGACAATTCATGACTGCATGGGCAGAAATGGCTCGAGGAGCACATCGTCCTTCCATTCAACCTGTGTGGAATAGGGAGATTCTAATGGCAAGAGACCCTCCACGCATTACATGCAACCATCTTGAATTATACGAACAATTTTTTTCGCCAAATACCATTAAGGAAGAAGATACTGCTTCTCTAGTCCATCGATCTTTCTTCTTTAGAGCTTCTGACATAGCTGCTCTTCGTCTCTTGGTTCCATTTCACCTTCGTCAATGCACCACATTCGATCTTATCGCTTCATGTTTTTGGTGTTGTCGCACAAAAGCATTGCAGTTAGAGGCAGATGAAGAGGTACGAATGATGTGAGTCGTCAATGCACGCTCGAGGTTTAACGTTAACAATTCGCCACTTGTTGGATATTACGGTAACTGTTTTGCTTACCCAGCTGGCGTCACCACTGCAGCGAAGCTTTGTGGAAACCCATTTGGTTATGCAGTGGAGTTGGTAAGAAAATTAAAAGCTGAAGTTACAGAGGAATACATGCATTCTGTGGCCGATCTTATGGTTATTAAGGAACGGTGTTTATTTACAACTGTAAGGTCTTGTGTTATCTCAGATTTGACTCGTGCTAGGCTCTCAGAAGTGAATTTCGGATGGGGTAAAGGGGTGTATGGTGGAGTTGCAAAAGGTGGGGCTGGAACTTTTCCTGGAGTAACCTATATCGTCCCATACAAGAATATAAACGGAGAAGAAACTTTGATGTTACCAATTTGTTTGCCCTCTGAAGATATGAAGAGGTTTGCAAAAGAGTTGGATGAGATGCTTGGTAACCAAAATCATCTTACACCGAGTGCTCCTAGTTTTGTGATGTCTACCTTATAG

Protein sequence

>MS.gene22906.t1

MFTVRRCQPELVPPAAPTPCEVKLLSDIDDQEGMRFNSPVIFIYRHQPSMVEKDPVKVLKCALSKTLVYYYPFAGRIREGDGRKLMVDCTGEGVMFIEAEADVTLDQFGDALHPPFHCFHQLLYDVPGSEQIIDRPIRQIQVTRLKCGGFIVAMNWNHTMGDAAGLRQFMTAWAEMARGAHRPSIQPVWNREILMARDPPRITCNHLELYEQFFSPNTIKEEDTASLVHRSFFFRASDIAALRLLVPFHLRQCTTFDLIASCFWCCRTKALQLEADEELASPLQRSFVETHLVMQWSWSCVISDLTRARLSEVNFGWGKGVYGGVAKGGAGTFPGVTYIVPYKNINGEETLMLPICLPSEDMKRFAKELDEMLGNQNHLTPSAPSFVMSTL