Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060800.t1 | RHN63957.1 | 96.9 | 162 | 5 | 0 | 1 | 162 | 30 | 191 | 1.60E-84 | 322 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060800.t1 | Q8GW46 | 75.2 | 145 | 30 | 2 | 1 | 145 | 25 | 163 | 1.9e-54 | 213.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060800.t1 | A0A396IM32 | 96.9 | 162 | 5 | 0 | 1 | 162 | 30 | 191 | 1.1e-84 | 322.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene060800.t1 | TF | C2C2-YABBY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049907 | MS.gene060800 | 0.811319 | 7.43E-51 | -1.69E-46 |
| MS.gene050128 | MS.gene060800 | 0.854895 | 9.07E-62 | -1.69E-46 |
| MS.gene050581 | MS.gene060800 | 0.838958 | 2.11E-57 | -1.69E-46 |
| MS.gene052178 | MS.gene060800 | 0.809261 | 2.06E-50 | -1.69E-46 |
| MS.gene053813 | MS.gene060800 | 0.800838 | 1.19E-48 | -1.69E-46 |
| MS.gene054010 | MS.gene060800 | 0.805473 | 1.31E-49 | -1.69E-46 |
| MS.gene056611 | MS.gene060800 | 0.80647 | 8.10E-50 | -1.69E-46 |
| MS.gene056931 | MS.gene060800 | 0.801017 | 1.10E-48 | -1.69E-46 |
| MS.gene057537 | MS.gene060800 | 0.802848 | 4.62E-49 | -1.69E-46 |
| MS.gene058459 | MS.gene060800 | 0.8111 | 8.29E-51 | -1.69E-46 |
| MS.gene058903 | MS.gene060800 | 0.828163 | 1.05E-54 | -1.69E-46 |
| MS.gene059294 | MS.gene060800 | 0.833128 | 6.37E-56 | -1.69E-46 |
| MS.gene059974 | MS.gene060800 | 0.862413 | 5.16E-64 | -1.69E-46 |
| MS.gene060005 | MS.gene060800 | 0.870482 | 1.41E-66 | -1.69E-46 |
| MS.gene060799 | MS.gene060800 | 0.953281 | 3.87E-111 | -1.69E-46 |
| MS.gene060800 | MS.gene060801 | 0.971157 | 1.01E-132 | -1.69E-46 |
| MS.gene060800 | MS.gene061284 | 0.81463 | 1.40E-51 | -1.69E-46 |
| MS.gene060800 | MS.gene063103 | 0.840837 | 6.84E-58 | -1.69E-46 |
| MS.gene060800 | MS.gene063268 | 0.822659 | 2.10E-53 | -1.69E-46 |
| MS.gene060800 | MS.gene069891 | 0.83199 | 1.22E-55 | -1.69E-46 |
| MS.gene060800 | MS.gene072196 | 0.812473 | 4.16E-51 | -1.69E-46 |
| MS.gene060800 | MS.gene074368 | 0.806268 | 8.94E-50 | -1.69E-46 |
| MS.gene060800 | MS.gene07761 | 0.862356 | 5.37E-64 | -1.69E-46 |
| MS.gene060800 | MS.gene08691 | 0.852028 | 6.04E-61 | -1.69E-46 |
| MS.gene060800 | MS.gene08753 | 0.863614 | 2.20E-64 | -1.69E-46 |
| MS.gene060800 | MS.gene08811 | 0.853646 | 2.08E-61 | -1.69E-46 |
| MS.gene060800 | MS.gene08966 | 0.830567 | 2.73E-55 | -1.69E-46 |
| MS.gene060800 | MS.gene09086 | 0.838732 | 2.41E-57 | -1.69E-46 |
| MS.gene060800 | MS.gene20068 | 0.807315 | 5.37E-50 | -1.69E-46 |
| MS.gene060800 | MS.gene22859 | 0.830757 | 2.45E-55 | -1.69E-46 |
| MS.gene060800 | MS.gene22906 | 0.824557 | 7.57E-54 | -1.69E-46 |
| MS.gene060800 | MS.gene23887 | 0.806848 | 6.74E-50 | -1.69E-46 |
| MS.gene060800 | MS.gene25944 | 0.803666 | 3.13E-49 | -1.69E-46 |
| MS.gene060800 | MS.gene26193 | 0.831322 | 1.78E-55 | -1.69E-46 |
| MS.gene060800 | MS.gene28312 | 0.802171 | 6.37E-49 | -1.69E-46 |
| MS.gene060800 | MS.gene29762 | 0.812862 | 3.42E-51 | -1.69E-46 |
| MS.gene060800 | MS.gene29785 | 0.851496 | 8.54E-61 | -1.69E-46 |
| MS.gene060800 | MS.gene31854 | -0.837114 | 6.29E-57 | -1.69E-46 |
| MS.gene060800 | MS.gene32736 | 0.85725 | 1.86E-62 | -1.69E-46 |
| MS.gene060800 | MS.gene33652 | -0.814714 | 1.34E-51 | -1.69E-46 |
| MS.gene060800 | MS.gene34231 | 0.808749 | 2.66E-50 | -1.69E-46 |
| MS.gene060800 | MS.gene35480 | 0.832556 | 8.84E-56 | -1.69E-46 |
| MS.gene060800 | MS.gene35514 | 0.832636 | 8.44E-56 | -1.69E-46 |
| MS.gene060800 | MS.gene35721 | 0.838671 | 2.50E-57 | -1.69E-46 |
| MS.gene060800 | MS.gene35804 | 0.806113 | 9.63E-50 | -1.69E-46 |
| MS.gene060800 | MS.gene36377 | 0.830093 | 3.57E-55 | -1.69E-46 |
| MS.gene060800 | MS.gene36610 | 0.80847 | 3.05E-50 | -1.69E-46 |
| MS.gene060800 | MS.gene40233 | 0.803519 | 3.35E-49 | -1.69E-46 |
| MS.gene060800 | MS.gene41950 | 0.866685 | 2.38E-65 | -1.69E-46 |
| MS.gene060800 | MS.gene42660 | 0.845517 | 3.87E-59 | -1.69E-46 |
| MS.gene060800 | MS.gene43899 | 0.837556 | 4.85E-57 | -1.69E-46 |
| MS.gene060800 | MS.gene45237 | 0.810909 | 9.12E-51 | -1.69E-46 |
| MS.gene060800 | MS.gene48285 | 0.867161 | 1.68E-65 | -1.69E-46 |
| MS.gene060800 | MS.gene48287 | 0.865456 | 5.83E-65 | -1.69E-46 |
| MS.gene060800 | MS.gene48401 | 0.867675 | 1.15E-65 | -1.69E-46 |
| MS.gene060800 | MS.gene48438 | 0.817858 | 2.65E-52 | -1.69E-46 |
| MS.gene060800 | MS.gene48796 | 0.807864 | 4.10E-50 | -1.69E-46 |
| MS.gene060800 | MS.gene49928 | 0.801947 | 7.08E-49 | -1.69E-46 |
| MS.gene060800 | MS.gene51304 | 0.82826 | 9.93E-55 | -1.69E-46 |
| MS.gene060800 | MS.gene52860 | 0.800515 | 1.39E-48 | -1.69E-46 |
| MS.gene060800 | MS.gene53276 | 0.844663 | 6.58E-59 | -1.69E-46 |
| MS.gene060800 | MS.gene59947 | 0.958549 | 1.79E-116 | -1.69E-46 |
| MS.gene060800 | MS.gene60558 | 0.817175 | 3.78E-52 | -1.69E-46 |
| MS.gene060800 | MS.gene61632 | 0.805702 | 1.17E-49 | -1.69E-46 |
| MS.gene060800 | MS.gene61955 | 0.80393 | 2.76E-49 | -1.69E-46 |
| MS.gene060800 | MS.gene62396 | 0.978976 | 5.76E-147 | -1.69E-46 |
| MS.gene060800 | MS.gene62645 | 0.806207 | 9.20E-50 | -1.69E-46 |
| MS.gene060800 | MS.gene65252 | 0.804704 | 1.90E-49 | -1.69E-46 |
| MS.gene060800 | MS.gene66848 | 0.822661 | 2.10E-53 | -1.69E-46 |
| MS.gene060800 | MS.gene68151 | 0.816102 | 6.57E-52 | -1.69E-46 |
| MS.gene060800 | MS.gene68338 | 0.836935 | 6.99E-57 | -1.69E-46 |
| MS.gene060800 | MS.gene68423 | 0.805757 | 1.14E-49 | -1.69E-46 |
| MS.gene060800 | MS.gene68751 | 0.842359 | 2.71E-58 | -1.69E-46 |
| MS.gene060800 | MS.gene69718 | 0.821871 | 3.21E-53 | -1.69E-46 |
| MS.gene060800 | MS.gene70615 | 0.801935 | 7.12E-49 | -1.69E-46 |
| MS.gene060800 | MS.gene72905 | 0.800203 | 1.61E-48 | -1.69E-46 |
| MS.gene060800 | MS.gene75616 | 0.84882 | 4.80E-60 | -1.69E-46 |
| MS.gene060800 | MS.gene76463 | 0.800899 | 1.16E-48 | -1.69E-46 |
| MS.gene060800 | MS.gene76557 | 0.858091 | 1.05E-62 | -1.69E-46 |
| MS.gene060800 | MS.gene76747 | 0.806167 | 9.38E-50 | -1.69E-46 |
| MS.gene060800 | MS.gene79474 | 0.810911 | 9.11E-51 | -1.69E-46 |
| MS.gene060800 | MS.gene79806 | 0.867435 | 1.37E-65 | -1.69E-46 |
| MS.gene060800 | MS.gene81671 | 0.814006 | 1.92E-51 | -1.69E-46 |
| MS.gene060800 | MS.gene82256 | 0.816621 | 5.03E-52 | -1.69E-46 |
| MS.gene060800 | MS.gene85171 | 0.891476 | 3.84E-74 | -1.69E-46 |
| MS.gene060800 | MS.gene88217 | 0.80951 | 1.83E-50 | -1.69E-46 |
| MS.gene060800 | MS.gene90618 | 0.810556 | 1.09E-50 | -1.69E-46 |
| MS.gene060800 | MS.gene95539 | 0.829335 | 5.45E-55 | -1.69E-46 |
| MS.gene060800 | MS.gene96206 | 0.823032 | 1.72E-53 | -1.69E-46 |
| MS.gene060800 | MS.gene98287 | 0.844957 | 5.48E-59 | -1.69E-46 |
| MS.gene060800 | MS.gene98532 | 0.833849 | 4.21E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060800.t1 | MTR_4g114730 | 96.296 | 162 | 6 | 0 | 1 | 162 | 30 | 191 | 3.84e-117 | 329 |
| MS.gene060800.t1 | MTR_2g087740 | 57.143 | 154 | 58 | 3 | 1 | 146 | 28 | 181 | 2.48e-50 | 160 |
| MS.gene060800.t1 | MTR_4g025900 | 51.977 | 177 | 59 | 4 | 1 | 157 | 39 | 209 | 4.58e-45 | 147 |
| MS.gene060800.t1 | MTR_4g101660 | 55.629 | 151 | 49 | 4 | 1 | 136 | 34 | 181 | 1.15e-40 | 136 |
| MS.gene060800.t1 | MTR_4g050300 | 55.921 | 152 | 51 | 6 | 1 | 146 | 25 | 166 | 1.68e-40 | 134 |
| MS.gene060800.t1 | MTR_5g034030 | 48.951 | 143 | 51 | 4 | 1 | 129 | 28 | 162 | 6.16e-36 | 124 |
| MS.gene060800.t1 | MTR_5g046230 | 39.259 | 135 | 63 | 2 | 1 | 128 | 33 | 155 | 8.88e-23 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060800.t1 | AT2G26580 | 75.172 | 145 | 30 | 2 | 1 | 145 | 25 | 163 | 6.66e-74 | 219 |
| MS.gene060800.t1 | AT2G26580 | 75.172 | 145 | 30 | 2 | 1 | 145 | 25 | 163 | 6.66e-74 | 219 |
| MS.gene060800.t1 | AT1G08465 | 55.128 | 156 | 48 | 4 | 1 | 144 | 24 | 169 | 1.79e-47 | 152 |
| MS.gene060800.t1 | AT2G45190 | 54.605 | 152 | 53 | 4 | 1 | 136 | 39 | 190 | 1.24e-43 | 144 |
| MS.gene060800.t1 | AT4G00180 | 49.704 | 169 | 51 | 4 | 1 | 138 | 8 | 173 | 2.24e-38 | 130 |
| MS.gene060800.t1 | AT4G00180 | 49.704 | 169 | 51 | 4 | 1 | 138 | 39 | 204 | 8.42e-38 | 129 |
| MS.gene060800.t1 | AT2G45190 | 92.982 | 57 | 4 | 0 | 80 | 136 | 70 | 126 | 3.27e-34 | 118 |
| MS.gene060800.t1 | AT1G23420 | 47.945 | 146 | 62 | 3 | 1 | 132 | 35 | 180 | 7.47e-32 | 114 |
| MS.gene060800.t1 | AT1G23420 | 47.945 | 146 | 62 | 3 | 1 | 132 | 66 | 211 | 1.87e-31 | 114 |
| MS.gene060800.t1 | AT1G69180 | 40.625 | 128 | 70 | 2 | 1 | 128 | 35 | 156 | 2.11e-24 | 93.6 |
Find 34 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATCCTATCGTTGCATT+TGG | 0.296610 | 8.2:-13664384 | None:intergenic |
| GCTTCTCTGTGACTGATATC+AGG | 0.363234 | 8.2:-13664900 | None:intergenic |
| GCAATCCTATCGTTGCATTT+GGG | 0.399881 | 8.2:-13664383 | None:intergenic |
| ACTGTCATGGCAAGATGTTC+AGG | 0.423195 | 8.2:+13663317 | MS.gene060800:CDS |
| GTGGTCACTGCACAAATCTA+TGG | 0.424333 | 8.2:+13663265 | MS.gene060800:CDS |
| AGGTACACGTTGCCTCTTCT+CGG | 0.458670 | 8.2:-13664711 | None:intergenic |
| ATCAGCCCAAAATGAATATG+AGG | 0.476928 | 8.2:-13665041 | None:intergenic |
| CACCCATGTTACTGAGGAAA+GGG | 0.483814 | 8.2:+13664424 | MS.gene060800:CDS |
| GAGCAACAATCAAGCTAAGA+TGG | 0.499438 | 8.2:+13665070 | MS.gene060800:CDS |
| TCCTCAGTAACATGGGTGGT+TGG | 0.501150 | 8.2:-13664419 | None:intergenic |
| ACTGCATGAATCCAGAGTAT+AGG | 0.501971 | 8.2:+13664342 | MS.gene060800:CDS |
| GGTACACGTTGCCTCTTCTC+GGG | 0.503039 | 8.2:-13664710 | None:intergenic |
| CAACCCTTTCCTCAGTAACA+TGG | 0.504380 | 8.2:-13664427 | None:intergenic |
| TGAGAAGCGTTTGATGTCTA+CGG | 0.515736 | 8.2:+13665201 | MS.gene060800:CDS |
| CCTATCGTTGCATTTGGGAG+TGG | 0.533061 | 8.2:-13664378 | None:intergenic |
| AATTTCCAGCTCCCGAGAAG+AGG | 0.540719 | 8.2:+13664699 | MS.gene060800:intron |
| AAATCTATGGTCTGTAAACA+TGG | 0.552321 | 8.2:+13663278 | MS.gene060800:CDS |
| CCGCGTTTCAGTCACTGTCA+TGG | 0.556178 | 8.2:+13663304 | MS.gene060800:CDS |
| TCTGGATTCATGCAGTGGCT+AGG | 0.562771 | 8.2:-13664335 | None:intergenic |
| CTAGTTCGAATCCTATACTC+TGG | 0.567724 | 8.2:-13664353 | None:intergenic |
| GGAAGAGATTCAGAGGATCA+AGG | 0.576711 | 8.2:+13664869 | MS.gene060800:CDS |
| CCACCCATGTTACTGAGGAA+AGG | 0.581614 | 8.2:+13664423 | MS.gene060800:CDS |
| ATGAACTGATTATAAGCAGA+AGG | 0.586762 | 8.2:-13664731 | None:intergenic |
| CCACTCCCAAATGCAACGAT+AGG | 0.592244 | 8.2:+13664378 | MS.gene060800:CDS |
| ATTTCAAACAAGCTACTGCA+TGG | 0.595371 | 8.2:-13663228 | None:intergenic |
| TATGCAGGGAAGAGATTCAG+AGG | 0.621557 | 8.2:+13664862 | MS.gene060800:intron |
| AACCCTTTCCTCAGTAACAT+GGG | 0.626838 | 8.2:-13664426 | None:intergenic |
| TATACTCTGGATTCATGCAG+TGG | 0.629931 | 8.2:-13664340 | None:intergenic |
| TGTGCAGTGACCACATCGAA+CGG | 0.632060 | 8.2:-13663256 | None:intergenic |
| ACCAACCACCCATGTTACTG+AGG | 0.669098 | 8.2:+13664418 | MS.gene060800:CDS |
| GAAATAGTGACCGTTCGATG+TGG | 0.670282 | 8.2:+13663246 | MS.gene060800:CDS |
| CCTTTCCTCAGTAACATGGG+TGG | 0.674444 | 8.2:-13664423 | None:intergenic |
| CCATGACAGTGACTGAAACG+CGG | 0.691630 | 8.2:-13663304 | None:intergenic |
| TGACAGTGACTGAAACGCGG+CGG | 0.753574 | 8.2:-13663301 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGATTGAAAAATTAAAT+TGG | - | chr8.2:13665118-13665137 | None:intergenic | 10.0% |
| !!! | ATTATTTCTTTATTTTTTAG+TGG | + | chr8.2:13665009-13665028 | MS.gene060800:intron | 10.0% |
| !!! | TGATTATTTTTATTATATTC+AGG | + | chr8.2:13665174-13665193 | MS.gene060800:intron | 10.0% |
| !!! | TTATTTCTTTATTTTTTAGT+GGG | + | chr8.2:13665010-13665029 | MS.gene060800:intron | 10.0% |
| !! | TTTAAATAGATAGGAAAAAA+AGG | - | chr8.2:13664489-13664508 | None:intergenic | 15.0% |
| !!! | CATAATTTTATATATATGCA+GGG | + | chr8.2:13664848-13664867 | MS.gene060800:intron | 15.0% |
| !!! | TCATAATTTTATATATATGC+AGG | + | chr8.2:13664847-13664866 | MS.gene060800:intron | 15.0% |
| !! | ATAATTAATTACTACTAGCT+AGG | - | chr8.2:13663870-13663889 | None:intergenic | 20.0% |
| !! | ATCAATGAAACAATAAAGTA+AGG | - | chr8.2:13664303-13664322 | None:intergenic | 20.0% |
| !! | TAATTAATTACTACTAGCTA+GGG | - | chr8.2:13663869-13663888 | None:intergenic | 20.0% |
| !!! | ATTTTCCTCATATTCATTTT+GGG | + | chr8.2:13665036-13665055 | MS.gene060800:CDS | 20.0% |
| !!! | GTATATATAGTTGATTCAAT+TGG | + | chr8.2:13664793-13664812 | MS.gene060800:intron | 20.0% |
| ! | AATTAATTACTACTAGCTAG+GGG | - | chr8.2:13663868-13663887 | None:intergenic | 25.0% |
| ! | AGTCTATGAAAAAGGAAAAT+AGG | - | chr8.2:13663672-13663691 | None:intergenic | 25.0% |
| ! | ATGAAACAATAAAGTAAGGA+AGG | - | chr8.2:13664299-13664318 | None:intergenic | 25.0% |
| ! | GATTTAGAAAATAAACTACG+TGG | - | chr8.2:13664597-13664616 | None:intergenic | 25.0% |
| ! | TAGGAAAAGTTCATATATCT+AGG | + | chr8.2:13663799-13663818 | MS.gene060800:intron | 25.0% |
| !! | AAAACATTTTCAGTATGGTT+TGG | - | chr8.2:13663722-13663741 | None:intergenic | 25.0% |
| !! | CATTTTCCTCATATTCATTT+TGG | + | chr8.2:13665035-13665054 | MS.gene060800:CDS | 25.0% |
| !! | TAAGCAAAACATTTTCAGTA+TGG | - | chr8.2:13663727-13663746 | None:intergenic | 25.0% |
| !! | TAGTATTTCTATGTTCGTTA+AGG | - | chr8.2:13664629-13664648 | None:intergenic | 25.0% |
| !!! | AAATAGGTTTGTTTTTATGG+CGG | - | chr8.2:13663656-13663675 | None:intergenic | 25.0% |
| !!! | GGAAAATAGGTTTGTTTTTA+TGG | - | chr8.2:13663659-13663678 | None:intergenic | 25.0% |
| !!! | TTGTTTCATTGATTTTCTTC+AGG | + | chr8.2:13664310-13664329 | MS.gene060800:intron | 25.0% |
| AAAATAGATCTATCCTAGCT+AGG | + | chr8.2:13663414-13663433 | MS.gene060800:intron | 30.0% | |
| AAATCTATGGTCTGTAAACA+TGG | + | chr8.2:13663278-13663297 | MS.gene060800:CDS | 30.0% | |
| ACAGTTCTTTCTTGTTAAGT+TGG | - | chr8.2:13664248-13664267 | None:intergenic | 30.0% | |
| ATGAACTGATTATAAGCAGA+AGG | - | chr8.2:13664734-13664753 | None:intergenic | 30.0% | |
| ATTAATTACTACTAGCTAGG+GGG | - | chr8.2:13663867-13663886 | None:intergenic | 30.0% | |
| ! | AAAATCGAAGTATCTTGGTT+TGG | + | chr8.2:13663497-13663516 | MS.gene060800:intron | 30.0% |
| ! | GAGAGTATATAGTAAACTCA+CGG | - | chr8.2:13664460-13664479 | None:intergenic | 30.0% |
| ! | TTGAGAAAATCGAAGTATCT+TGG | + | chr8.2:13663492-13663511 | MS.gene060800:intron | 30.0% |
| !! | CTTGTTAAGTTGGAAATACT+AGG | - | chr8.2:13664238-13664257 | None:intergenic | 30.0% |
| ACAGTTGTTGGTATGAATGA+AGG | - | chr8.2:13664064-13664083 | None:intergenic | 35.0% | |
| AGCTACAAAGCTAGTTAGTT+AGG | + | chr8.2:13663528-13663547 | MS.gene060800:intron | 35.0% | |
| AGTATATAGTAAACTCACGG+CGG | - | chr8.2:13664457-13664476 | None:intergenic | 35.0% | |
| ATCAATGCTTTGTACAGAGA+TGG | - | chr8.2:13664185-13664204 | None:intergenic | 35.0% | |
| ATCAGCCCAAAATGAATATG+AGG | - | chr8.2:13665044-13665063 | None:intergenic | 35.0% | |
| ATTTCAAACAAGCTACTGCA+TGG | - | chr8.2:13663231-13663250 | None:intergenic | 35.0% | |
| CATACCAACAACTGTCAATT+GGG | + | chr8.2:13664069-13664088 | MS.gene060800:intron | 35.0% | |
| TAAACTACGTGGCTATGATA+TGG | - | chr8.2:13664586-13664605 | None:intergenic | 35.0% | |
| TCATACCAACAACTGTCAAT+TGG | + | chr8.2:13664068-13664087 | MS.gene060800:intron | 35.0% | |
| TTAATTACTACTAGCTAGGG+GGG | - | chr8.2:13663866-13663885 | None:intergenic | 35.0% | |
| TTCTGACGAGTCTATGAAAA+AGG | - | chr8.2:13663680-13663699 | None:intergenic | 35.0% | |
| ! | AAAGACTTTTGCCTTTGCTT+TGG | + | chr8.2:13663748-13663767 | MS.gene060800:intron | 35.0% |
| ! | AAGACTTTTGCCTTTGCTTT+GGG | + | chr8.2:13663749-13663768 | MS.gene060800:intron | 35.0% |
| ! | ACACATCAAATCAGTTCTGA+AGG | - | chr8.2:13663780-13663799 | None:intergenic | 35.0% |
| ! | TATTCATTTTGGGCTGATGT+TGG | + | chr8.2:13665046-13665065 | MS.gene060800:CDS | 35.0% |
| !! | AAGTATCTTGGTTTGGCTTT+GGG | + | chr8.2:13663504-13663523 | MS.gene060800:intron | 35.0% |
| !! | ATTTTCAGTATGGTTTGGCT+TGG | - | chr8.2:13663717-13663736 | None:intergenic | 35.0% |
| !! | TCAGAACTGATTTGATGTGT+AGG | + | chr8.2:13663780-13663799 | MS.gene060800:intron | 35.0% |
| !!! | ATTTTTGGTGTAGATCCCTA+AGG | + | chr8.2:13664038-13664057 | MS.gene060800:intron | 35.0% |
| AACCCTTTCCTCAGTAACAT+GGG | - | chr8.2:13664429-13664448 | None:intergenic | 40.0% | |
| ACTGCATGAATCCAGAGTAT+AGG | + | chr8.2:13664342-13664361 | MS.gene060800:CDS | 40.0% | |
| CTAGTTCGAATCCTATACTC+TGG | - | chr8.2:13664356-13664375 | None:intergenic | 40.0% | |
| GAAATCAAAGAAGCCTAGCT+AGG | - | chr8.2:13663430-13663449 | None:intergenic | 40.0% | |
| GAAGGTAATACCCAAAGCAA+AGG | - | chr8.2:13663762-13663781 | None:intergenic | 40.0% | |
| GAGCAACAATCAAGCTAAGA+TGG | + | chr8.2:13665070-13665089 | MS.gene060800:CDS | 40.0% | |
| GCAATCCTATCGTTGCATTT+GGG | - | chr8.2:13664386-13664405 | None:intergenic | 40.0% | |
| TATACTCTGGATTCATGCAG+TGG | - | chr8.2:13664343-13664362 | None:intergenic | 40.0% | |
| TCTGGATCATAACCTAGCTA+GGG | + | chr8.2:13663448-13663467 | MS.gene060800:intron | 40.0% | |
| TGCAATCCTATCGTTGCATT+TGG | - | chr8.2:13664387-13664406 | None:intergenic | 40.0% | |
| TGGTATGAATGAAGGCCTTA+GGG | - | chr8.2:13664056-13664075 | None:intergenic | 40.0% | |
| TTCTGGATCATAACCTAGCT+AGG | + | chr8.2:13663447-13663466 | MS.gene060800:intron | 40.0% | |
| TTGGTATGAATGAAGGCCTT+AGG | - | chr8.2:13664057-13664076 | None:intergenic | 40.0% | |
| ! | AGCTAGGCTTCTTTGATTTC+TGG | + | chr8.2:13663430-13663449 | MS.gene060800:intron | 40.0% |
| ! | ATTTTCCAGAAACCCTAGCT+AGG | - | chr8.2:13663463-13663482 | None:intergenic | 40.0% |
| ! | TTTTATGGCGGCTTACTTAC+AGG | - | chr8.2:13663644-13663663 | None:intergenic | 40.0% |
| !! | AGTATCTTGGTTTGGCTTTG+GGG | + | chr8.2:13663505-13663524 | MS.gene060800:intron | 40.0% |
| !! | GAAGTATCTTGGTTTGGCTT+TGG | + | chr8.2:13663503-13663522 | MS.gene060800:intron | 40.0% |
| !! | TGAGAAGCGTTTGATGTCTA+CGG | + | chr8.2:13665201-13665220 | MS.gene060800:CDS | 40.0% |
| ACTGTCATGGCAAGATGTTC+AGG | + | chr8.2:13663317-13663336 | MS.gene060800:CDS | 45.0% | |
| AGCTACTGCCTAACTAGCTA+GGG | - | chr8.2:13663611-13663630 | None:intergenic | 45.0% | |
| CAACAACTGTCAATTGGGCT+AGG | + | chr8.2:13664074-13664093 | MS.gene060800:intron | 45.0% | |
| CAACCCTTTCCTCAGTAACA+TGG | - | chr8.2:13664430-13664449 | None:intergenic | 45.0% | |
| CACCCATGTTACTGAGGAAA+GGG | + | chr8.2:13664424-13664443 | MS.gene060800:CDS | 45.0% | |
| CATAACCTAGCTAGGGTTTC+TGG | + | chr8.2:13663455-13663474 | MS.gene060800:intron | 45.0% | |
| CTAGCCCAATTGACAGTTGT+TGG | - | chr8.2:13664076-13664095 | None:intergenic | 45.0% | |
| GAAATAGTGACCGTTCGATG+TGG | + | chr8.2:13663246-13663265 | MS.gene060800:CDS | 45.0% | |
| GCTTCTCTGTGACTGATATC+AGG | - | chr8.2:13664903-13664922 | None:intergenic | 45.0% | |
| GGAAGAGATTCAGAGGATCA+AGG | + | chr8.2:13664869-13664888 | MS.gene060800:CDS | 45.0% | |
| GTGGTCACTGCACAAATCTA+TGG | + | chr8.2:13663265-13663284 | MS.gene060800:CDS | 45.0% | |
| TATGCAGGGAAGAGATTCAG+AGG | + | chr8.2:13664862-13664881 | MS.gene060800:intron | 45.0% | |
| !! | TCAGTATGGTTTGGCTTGGT+GGG | - | chr8.2:13663713-13663732 | None:intergenic | 45.0% |
| !! | TTCAGTATGGTTTGGCTTGG+TGG | - | chr8.2:13663714-13663733 | None:intergenic | 45.0% |
| !! | ATATTTAAATTTAAATAGAT+AGG | - | chr8.2:13664498-13664517 | None:intergenic | 5.0% |
| !!! | ATATTTTTTATAATAAAGAT+TGG | - | chr8.2:13663918-13663937 | None:intergenic | 5.0% |
| !!! | TTTTGTTTATTATATATTTT+TGG | + | chr8.2:13664023-13664042 | MS.gene060800:intron | 5.0% |
| AATTTCCAGCTCCCGAGAAG+AGG | + | chr8.2:13664699-13664718 | MS.gene060800:intron | 50.0% | |
| ACCAACCACCCATGTTACTG+AGG | + | chr8.2:13664418-13664437 | MS.gene060800:CDS | 50.0% | |
| AGGTACACGTTGCCTCTTCT+CGG | - | chr8.2:13664714-13664733 | None:intergenic | 50.0% | |
| CAGCTACTGCCTAACTAGCT+AGG | - | chr8.2:13663612-13663631 | None:intergenic | 50.0% | |
| CCACCCATGTTACTGAGGAA+AGG | + | chr8.2:13664423-13664442 | MS.gene060800:CDS | 50.0% | |
| CCACTCCCAAATGCAACGAT+AGG | + | chr8.2:13664378-13664397 | MS.gene060800:CDS | 50.0% | |
| CCATGACAGTGACTGAAACG+CGG | - | chr8.2:13663307-13663326 | None:intergenic | 50.0% | |
| CCTATCGTTGCATTTGGGAG+TGG | - | chr8.2:13664381-13664400 | None:intergenic | 50.0% | |
| CCTTTCCTCAGTAACATGGG+TGG | - | chr8.2:13664426-13664445 | None:intergenic | 50.0% | |
| TATGGCGGCTTACTTACAGG+TGG | - | chr8.2:13663641-13663660 | None:intergenic | 50.0% | |
| TCCTCAGTAACATGGGTGGT+TGG | - | chr8.2:13664422-13664441 | None:intergenic | 50.0% | |
| TCTGGATTCATGCAGTGGCT+AGG | - | chr8.2:13664338-13664357 | None:intergenic | 50.0% | |
| TGAGCTAGCCCTAGCTAGTT+AGG | + | chr8.2:13663600-13663619 | MS.gene060800:intron | 50.0% | |
| TGTGCAGTGACCACATCGAA+CGG | - | chr8.2:13663259-13663278 | None:intergenic | 50.0% | |
| !! | ATGGTTTGGCTTGGTGGGTT+AGG | - | chr8.2:13663708-13663727 | None:intergenic | 50.0% |
| CCGCGTTTCAGTCACTGTCA+TGG | + | chr8.2:13663304-13663323 | MS.gene060800:CDS | 55.0% | |
| GGTACACGTTGCCTCTTCTC+GGG | - | chr8.2:13664713-13664732 | None:intergenic | 55.0% | |
| TGACAGTGACTGAAACGCGG+CGG | - | chr8.2:13663304-13663323 | None:intergenic | 55.0% | |
| !! | CTACTAGCTAGGGGGGTGTT+TGG | - | chr8.2:13663859-13663878 | None:intergenic | 55.0% |
| !! | CTAGCTAGGGCTAGCTCATC+AGG | - | chr8.2:13663598-13663617 | None:intergenic | 55.0% |
| !! | TAGCTAGGGGGGTGTTTGGC+TGG | - | chr8.2:13663855-13663874 | None:intergenic | 60.0% |
| CGTTGCCTCTTCTCGGGAGC+TGG | - | chr8.2:13664707-13664726 | None:intergenic | 65.0% | |
| !! | GGGGGGTGTTTGGCTGGATG+AGG | - | chr8.2:13663849-13663868 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 13663219 | 13665243 | 13663219 | ID=MS.gene060800 |
| chr8.2 | mRNA | 13663219 | 13665243 | 13663219 | ID=MS.gene060800.t1;Parent=MS.gene060800 |
| chr8.2 | exon | 13663219 | 13663338 | 13663219 | ID=MS.gene060800.t1.exon1;Parent=MS.gene060800.t1 |
| chr8.2 | CDS | 13663219 | 13663338 | 13663219 | ID=cds.MS.gene060800.t1;Parent=MS.gene060800.t1 |
| chr8.2 | exon | 13664332 | 13664458 | 13664332 | ID=MS.gene060800.t1.exon2;Parent=MS.gene060800.t1 |
| chr8.2 | CDS | 13664332 | 13664458 | 13664332 | ID=cds.MS.gene060800.t1;Parent=MS.gene060800.t1 |
| chr8.2 | exon | 13664708 | 13664756 | 13664708 | ID=MS.gene060800.t1.exon3;Parent=MS.gene060800.t1 |
| chr8.2 | CDS | 13664708 | 13664756 | 13664708 | ID=cds.MS.gene060800.t1;Parent=MS.gene060800.t1 |
| chr8.2 | exon | 13664869 | 13664944 | 13664869 | ID=MS.gene060800.t1.exon4;Parent=MS.gene060800.t1 |
| chr8.2 | CDS | 13664869 | 13664944 | 13664869 | ID=cds.MS.gene060800.t1;Parent=MS.gene060800.t1 |
| chr8.2 | exon | 13665029 | 13665097 | 13665029 | ID=MS.gene060800.t1.exon5;Parent=MS.gene060800.t1 |
| chr8.2 | CDS | 13665029 | 13665097 | 13665029 | ID=cds.MS.gene060800.t1;Parent=MS.gene060800.t1 |
| chr8.2 | exon | 13665196 | 13665243 | 13665196 | ID=MS.gene060800.t1.exon6;Parent=MS.gene060800.t1 |
| chr8.2 | CDS | 13665196 | 13665243 | 13665196 | ID=cds.MS.gene060800.t1;Parent=MS.gene060800.t1 |
| Gene Sequence |
| Protein sequence |
