Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22986.t1 | XP_003625904.1 | 99 | 293 | 3 | 0 | 1 | 293 | 1 | 293 | 1.30E-158 | 568.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22986.t1 | Q9LHH7 | 79.1 | 287 | 60 | 0 | 2 | 288 | 9 | 295 | 1.1e-129 | 464.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22986.t1 | B7FKU9 | 99.0 | 293 | 3 | 0 | 1 | 293 | 1 | 293 | 9.7e-159 | 568.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22986 | MS.gene62999 | PPI |
| MS.gene65953 | MS.gene22986 | PPI |
| MS.gene22986 | MS.gene023835 | PPI |
| MS.gene52204 | MS.gene22986 | PPI |
| MS.gene27688 | MS.gene22986 | PPI |
| MS.gene22986 | MS.gene026617 | PPI |
| MS.gene33587 | MS.gene22986 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22986.t1 | MTR_7g108580 | 98.976 | 293 | 3 | 0 | 1 | 293 | 1 | 293 | 0.0 | 587 |
| MS.gene22986.t1 | MTR_7g076680 | 66.667 | 285 | 95 | 0 | 4 | 288 | 79 | 363 | 2.02e-142 | 405 |
| MS.gene22986.t1 | MTR_7g076680 | 66.667 | 285 | 95 | 0 | 4 | 288 | 58 | 342 | 2.54e-142 | 404 |
| MS.gene22986.t1 | MTR_7g076680 | 66.667 | 285 | 95 | 0 | 4 | 288 | 62 | 346 | 2.67e-142 | 404 |
| MS.gene22986.t1 | MTR_1g030450 | 62.369 | 287 | 108 | 0 | 2 | 288 | 70 | 356 | 7.74e-128 | 368 |
| MS.gene22986.t1 | MTR_3g007490 | 51.557 | 289 | 139 | 1 | 2 | 290 | 73 | 360 | 5.95e-107 | 315 |
| MS.gene22986.t1 | MTR_3g007580 | 43.750 | 112 | 56 | 2 | 127 | 237 | 13 | 118 | 1.36e-25 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22986.t1 | AT3G12290 | 79.094 | 287 | 60 | 0 | 2 | 288 | 9 | 295 | 3.02e-171 | 476 |
| MS.gene22986.t1 | AT4G00620 | 65.505 | 287 | 99 | 0 | 2 | 288 | 69 | 355 | 2.18e-140 | 400 |
| MS.gene22986.t1 | AT2G38660 | 61.754 | 285 | 109 | 0 | 4 | 288 | 65 | 349 | 9.07e-127 | 365 |
| MS.gene22986.t1 | AT2G38660 | 61.754 | 285 | 109 | 0 | 4 | 288 | 65 | 349 | 9.07e-127 | 365 |
| MS.gene22986.t1 | AT2G38660 | 59.684 | 253 | 102 | 0 | 4 | 256 | 65 | 317 | 5.87e-108 | 317 |
| MS.gene22986.t1 | AT4G00600 | 54.704 | 287 | 94 | 1 | 2 | 288 | 55 | 305 | 1.13e-106 | 313 |
| MS.gene22986.t1 | AT2G38660 | 60.452 | 177 | 70 | 0 | 4 | 180 | 65 | 241 | 1.82e-74 | 228 |
| MS.gene22986.t1 | AT2G38660 | 50.505 | 99 | 49 | 0 | 4 | 102 | 65 | 163 | 1.52e-27 | 105 |
| MS.gene22986.t1 | AT2G38660 | 50.505 | 99 | 49 | 0 | 4 | 102 | 65 | 163 | 1.52e-27 | 105 |
| MS.gene22986.t1 | AT2G38660 | 50.505 | 99 | 49 | 0 | 4 | 102 | 65 | 163 | 1.52e-27 | 105 |
| MS.gene22986.t1 | AT2G38660 | 50.505 | 99 | 49 | 0 | 4 | 102 | 65 | 163 | 1.52e-27 | 105 |
Find 75 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAAAGCTTGCGCTGATT+TGG | 0.292482 | 7.2:-6451391 | MS.gene22986:CDS |
| TTATATATTTGCAGGTATAT+TGG | 0.326225 | 7.2:-6451189 | MS.gene22986:intron |
| CATCTTCATCTTCAGGTTCC+AGG | 0.333141 | 7.2:-6451471 | MS.gene22986:intron |
| GGTTGGATTACTCCTGTTCC+TGG | 0.334532 | 7.2:-6449203 | MS.gene22986:CDS |
| ACGAAGTGGTGTAAGTATAA+AGG | 0.338275 | 7.2:-6450020 | MS.gene22986:CDS |
| CACGGCTTTGCCGTCAATTA+CGG | 0.340063 | 7.2:+6451621 | None:intergenic |
| AGAAAAGCTTGCGCTGATTT+GGG | 0.341343 | 7.2:-6451390 | MS.gene22986:CDS |
| AGCAACATTGTGACTGTCAT+TGG | 0.347400 | 7.2:+6449170 | None:intergenic |
| CAACTAGGAAGGCAGGTTAT+AGG | 0.352622 | 7.2:-6449268 | MS.gene22986:CDS |
| GAGGAAGCATCTAAAGTTGC+TGG | 0.352957 | 7.2:-6449224 | MS.gene22986:CDS |
| CGAAGTGGTGTAAGTATAAA+GGG | 0.365346 | 7.2:-6450019 | MS.gene22986:CDS |
| AGCATTTACTTTGGGAGTGC+AGG | 0.386622 | 7.2:+6451031 | None:intergenic |
| TCAGCTTCGGAAATTTGTTC+AGG | 0.386703 | 7.2:+6451342 | None:intergenic |
| GAGCGGATCTCTGCCTTTCA+TGG | 0.387162 | 7.2:+6451061 | None:intergenic |
| TTCAAAAGCAGTAATGAAAC+TGG | 0.393159 | 7.2:+6449953 | None:intergenic |
| GGACTTGCAGTGGTGATAGT+AGG | 0.415849 | 7.2:-6451450 | MS.gene22986:CDS |
| AAGGCAGGTTATAGGCTTGT+TGG | 0.427901 | 7.2:-6449260 | MS.gene22986:CDS |
| TATAACCTGCCTTCCTAGTT+GGG | 0.428149 | 7.2:+6449270 | None:intergenic |
| AGTGACTCACCATGTACATT+GGG | 0.431155 | 7.2:+6451285 | None:intergenic |
| CTATAACCTGCCTTCCTAGT+TGG | 0.431628 | 7.2:+6449269 | None:intergenic |
| GCTTCACGTATGATATCTTC+TGG | 0.435944 | 7.2:+6449887 | None:intergenic |
| ATGCTTGATAACTTCAGCTT+CGG | 0.440233 | 7.2:+6451329 | None:intergenic |
| TTTCTTAGATCAAGGGAAGT+TGG | 0.440672 | 7.2:-6449343 | MS.gene22986:intron |
| GTGTAAGTATAAAGGGGAAA+AGG | 0.444068 | 7.2:-6450012 | MS.gene22986:CDS |
| AATGTTGCTGAAGAATACTT+TGG | 0.453034 | 7.2:-6449156 | MS.gene22986:CDS |
| GGACCTACACCTCCAGGAAC+AGG | 0.460733 | 7.2:+6449191 | None:intergenic |
| AGCCTTGAGAAGGATGTTGA+TGG | 0.461300 | 7.2:-6451113 | MS.gene22986:CDS |
| GGATTTCATCCTTTGAACAT+TGG | 0.471629 | 7.2:-6451092 | MS.gene22986:CDS |
| CGTATCCTCTCTGAGAAATA+CGG | 0.476330 | 7.2:-6451562 | MS.gene22986:CDS |
| GATATTGTTATTGCAGCAGC+AGG | 0.488835 | 7.2:-6449863 | MS.gene22986:CDS |
| ACATCTATTACTGCAGCTCC+AGG | 0.493139 | 7.2:+6449314 | None:intergenic |
| ACTATCACCACTGCAAGTCC+TGG | 0.494052 | 7.2:+6451453 | None:intergenic |
| ACTCCTGTTCCTGGAGGTGT+AGG | 0.496506 | 7.2:-6449194 | MS.gene22986:CDS |
| TGTTATTGCAGCAGCAGGAC+AGG | 0.498986 | 7.2:-6449858 | MS.gene22986:CDS |
| CGTATTTCTCAGAGAGGATA+CGG | 0.500459 | 7.2:+6451563 | None:intergenic |
| GACTTGCAGTGGTGATAGTA+GGG | 0.516140 | 7.2:-6451449 | MS.gene22986:CDS |
| TGTAAGTATAAAGGGGAAAA+GGG | 0.521694 | 7.2:-6450011 | MS.gene22986:CDS |
| GACTGAAATCAGCCTTGAGA+AGG | 0.525446 | 7.2:-6451123 | MS.gene22986:CDS |
| ATTGGCAAGCTTGCCATGAA+AGG | 0.531869 | 7.2:-6451074 | MS.gene22986:CDS |
| TTCTCTTCATTTATATGCTT+AGG | 0.532815 | 7.2:+6451152 | None:intergenic |
| GGGAAAAGGGCAGTTGTGGT+TGG | 0.536435 | 7.2:-6449998 | MS.gene22986:CDS |
| GCATTTACTTTGGGAGTGCA+GGG | 0.540237 | 7.2:+6451032 | None:intergenic |
| AGCAGCAGGACAGGCAAAGA+TGG | 0.543320 | 7.2:-6449849 | MS.gene22986:intron |
| CTTCGGAAATTTGTTCAGGA+AGG | 0.547633 | 7.2:+6451346 | None:intergenic |
| AGATCGGATTGTTTGTGCCA+CGG | 0.550515 | 7.2:+6451603 | None:intergenic |
| GATGACCCAACTAGGAAGGC+AGG | 0.556133 | 7.2:-6449275 | MS.gene22986:CDS |
| AAGCATCTAAAGTTGCTGGT+TGG | 0.557994 | 7.2:-6449220 | MS.gene22986:CDS |
| ATCCATCAACATCCTTCTCA+AGG | 0.558964 | 7.2:+6451111 | None:intergenic |
| TCATTTATATGCTTAGGCAA+TGG | 0.558977 | 7.2:+6451158 | None:intergenic |
| ATTCTGTTGATGACCCAACT+AGG | 0.559417 | 7.2:-6449283 | MS.gene22986:CDS |
| GTCATTGGACCTACACCTCC+AGG | 0.563478 | 7.2:+6449185 | None:intergenic |
| AAAGGGGAAAAGGGCAGTTG+TGG | 0.567603 | 7.2:-6450002 | MS.gene22986:CDS |
| CAAATGGCCACCGTAATTGA+CGG | 0.574064 | 7.2:-6451631 | MS.gene22986:CDS |
| AAGTGACTCACCATGTACAT+TGG | 0.574090 | 7.2:+6451284 | None:intergenic |
| CCTCGTCGGCGATTTCAGAT+CGG | 0.583482 | 7.2:+6451587 | None:intergenic |
| GCAAGCTTGCCAATGTTCAA+AGG | 0.584232 | 7.2:+6451083 | None:intergenic |
| AAGGGAAGTTGGATAAAACC+TGG | 0.587815 | 7.2:-6449332 | MS.gene22986:CDS |
| AACGCTGACCCCAATGTACA+TGG | 0.592212 | 7.2:-6451294 | MS.gene22986:intron |
| TGTTGATGACCCAACTAGGA+AGG | 0.598349 | 7.2:-6449279 | MS.gene22986:CDS |
| GGAGCTGCAGTAATAGATGT+TGG | 0.599760 | 7.2:-6449311 | MS.gene22986:CDS |
| GGCTTTGCCGTCAATTACGG+TGG | 0.613849 | 7.2:+6451624 | None:intergenic |
| TCAGGTTCCAGGACTTGCAG+TGG | 0.630873 | 7.2:-6451460 | MS.gene22986:intron |
| CGTAATTGACGGCAAAGCCG+TGG | 0.631640 | 7.2:-6451620 | MS.gene22986:CDS |
| GTTGGTAGAAGCAACATAGT+CGG | 0.632754 | 7.2:-6449980 | MS.gene22986:CDS |
| CCGATCTGAAATCGCCGACG+AGG | 0.637149 | 7.2:-6451587 | MS.gene22986:CDS |
| TGGATTACTCCTGTTCCTGG+AGG | 0.641207 | 7.2:-6449200 | MS.gene22986:CDS |
| CCTTGCCGTATTTCTCAGAG+AGG | 0.642605 | 7.2:+6451557 | None:intergenic |
| CCTCTCTGAGAAATACGGCA+AGG | 0.642652 | 7.2:-6451557 | MS.gene22986:intron |
| GGTGATAGTAGGGAACAGAC+AGG | 0.644648 | 7.2:-6451439 | MS.gene22986:CDS |
| GGAGTGCAGGGAACAAAGAG+CGG | 0.649406 | 7.2:+6451044 | None:intergenic |
| GAAGTGGTGTAAGTATAAAG+GGG | 0.666613 | 7.2:-6450018 | MS.gene22986:CDS |
| ACTTGTGTGTGAATGAGCAA+TGG | 0.673957 | 7.2:+6449913 | None:intergenic |
| AGAGAGGATACGGACCTCGT+CGG | 0.680772 | 7.2:+6451573 | None:intergenic |
| CTTGAACTATTGTCACGAAG+TGG | 0.690195 | 7.2:-6450034 | MS.gene22986:CDS |
| GTGACTCACCATGTACATTG+GGG | 0.704684 | 7.2:+6451286 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATCAATTAATATTAC+TGG | - | chr7.2:6449955-6449974 | MS.gene22986:CDS | 10.0% |
| !! | AAAAATCAATTAATATTACT+GGG | - | chr7.2:6449956-6449975 | MS.gene22986:CDS | 10.0% |
| !!! | AATTAGTTTATAATTATGAA+TGG | - | chr7.2:6449926-6449945 | MS.gene22986:CDS | 10.0% |
| !!! | GTTTAATATTATATTTTCAT+AGG | - | chr7.2:6451090-6451109 | MS.gene22986:CDS | 10.0% |
| !!! | TTTATACCTTTTTTATTTAA+AGG | - | chr7.2:6449519-6449538 | MS.gene22986:intron | 10.0% |
| !! | AAAATCAATTAATATTACTG+GGG | - | chr7.2:6449957-6449976 | MS.gene22986:CDS | 15.0% |
| !!! | TTTTAAAAAAAACATAGACT+TGG | + | chr7.2:6450966-6450985 | None:intergenic | 15.0% |
| !!! | TTTTTGTCAATTTTCAAATT+TGG | - | chr7.2:6451008-6451027 | MS.gene22986:intron | 15.0% |
| !! | TAAAAAAATAAACATGTGAG+TGG | + | chr7.2:6450180-6450199 | None:intergenic | 20.0% |
| !! | TTATATATTTGCAGGTATAT+TGG | - | chr7.2:6449560-6449579 | MS.gene22986:intron | 20.0% |
| !! | TTCAAGCCTTTAAATAAAAA+AGG | + | chr7.2:6449528-6449547 | None:intergenic | 20.0% |
| !! | TTTATTTAAAGGCTTGAATT+TGG | - | chr7.2:6449530-6449549 | MS.gene22986:intron | 20.0% |
| !!! | AATTTTCTAAAACTGTGTTT+TGG | + | chr7.2:6451307-6451326 | None:intergenic | 20.0% |
| !!! | ACGCATAAATAGTTTTTAAA+TGG | - | chr7.2:6451057-6451076 | MS.gene22986:CDS | 20.0% |
| !!! | ATTTACTTTTTCTTAGATCA+AGG | - | chr7.2:6451398-6451417 | MS.gene22986:CDS | 20.0% |
| !!! | TTTACTTTTTCTTAGATCAA+GGG | - | chr7.2:6451399-6451418 | MS.gene22986:CDS | 20.0% |
| ! | AAATGAACGATATATAAGAG+TGG | - | chr7.2:6451157-6451176 | MS.gene22986:CDS | 25.0% |
| ! | ATATTGATGAAGAGATGATT+GGG | + | chr7.2:6449225-6449244 | None:intergenic | 25.0% |
| ! | ATCCAAAAGATTTAAGAATG+AGG | + | chr7.2:6449744-6449763 | None:intergenic | 25.0% |
| ! | TATATTGATGAAGAGATGAT+TGG | + | chr7.2:6449226-6449245 | None:intergenic | 25.0% |
| ! | TATCAATAGGAAAATAATCC+AGG | - | chr7.2:6449776-6449795 | MS.gene22986:intron | 25.0% |
| ! | TTAGCTCAATATAATTGATG+TGG | + | chr7.2:6451139-6451158 | None:intergenic | 25.0% |
| ! | TTCAACTCATTTCTATCAAT+AGG | - | chr7.2:6449763-6449782 | MS.gene22986:intron | 25.0% |
| ! | TTCTCTTCATTTATATGCTT+AGG | + | chr7.2:6449600-6449619 | None:intergenic | 25.0% |
| ! | TTGAGAAGATTAATAACAGT+AGG | + | chr7.2:6451365-6451384 | None:intergenic | 25.0% |
| !! | AAATAGTTTTTAAATGGCAG+CGG | - | chr7.2:6451063-6451082 | MS.gene22986:CDS | 25.0% |
| !! | TGTCAATTTTCAAATTTGGA+TGG | - | chr7.2:6451012-6451031 | MS.gene22986:intron | 25.0% |
| !! | TTTTGCTAGCTAAATTAGAA+CGG | - | chr7.2:6450251-6450270 | MS.gene22986:intron | 25.0% |
| !!! | GTTTGTTGTTATATATTTGC+AGG | - | chr7.2:6449552-6449571 | MS.gene22986:intron | 25.0% |
| AAATTTGGATGGTTCTTTCT+TGG | - | chr7.2:6451023-6451042 | MS.gene22986:intron | 30.0% | |
| AATGTTGCTGAAGAATACTT+TGG | - | chr7.2:6451593-6451612 | MS.gene22986:CDS | 30.0% | |
| CAAAAACTGACACATATACT+AGG | + | chr7.2:6450994-6451013 | None:intergenic | 30.0% | |
| CAATATAATTGATGTGGAAC+TGG | + | chr7.2:6451133-6451152 | None:intergenic | 30.0% | |
| CTGATTGAATTTGTAGTGTT+TGG | - | chr7.2:6449888-6449907 | MS.gene22986:CDS | 30.0% | |
| GATATTCCTATAAACGACAT+TGG | - | chr7.2:6451256-6451275 | MS.gene22986:intron | 30.0% | |
| GCTCTGTTTGGTAAAAATAA+TGG | - | chr7.2:6449798-6449817 | MS.gene22986:intron | 30.0% | |
| GTAGTGTTTGGTAAAATTAG+CGG | - | chr7.2:6449900-6449919 | MS.gene22986:CDS | 30.0% | |
| TAAGACATAAGCTATAAGCT+CGG | - | chr7.2:6450119-6450138 | MS.gene22986:intron | 30.0% | |
| TAGTGTTTGGTAAAATTAGC+GGG | - | chr7.2:6449901-6449920 | MS.gene22986:CDS | 30.0% | |
| TCATTTATATGCTTAGGCAA+TGG | + | chr7.2:6449594-6449613 | None:intergenic | 30.0% | |
| TGTAAGTATAAAGGGGAAAA+GGG | - | chr7.2:6450738-6450757 | MS.gene22986:intron | 30.0% | |
| TGTAATTGTACGTTCTTGAA+CGG | + | chr7.2:6450626-6450645 | None:intergenic | 30.0% | |
| TTCAAAAGCAGTAATGAAAC+TGG | + | chr7.2:6450799-6450818 | None:intergenic | 30.0% | |
| TTTGCTAGCTAAATTAGAAC+GGG | - | chr7.2:6450252-6450271 | MS.gene22986:intron | 30.0% | |
| ! | CATATACCAATGTCGTTTAT+AGG | + | chr7.2:6451265-6451284 | None:intergenic | 30.0% |
| ! | CTCCTCATTCTTAAATCTTT+TGG | - | chr7.2:6449739-6449758 | MS.gene22986:intron | 30.0% |
| ! | TAACAGTAGGCTATATTTTC+TGG | + | chr7.2:6451352-6451371 | None:intergenic | 30.0% |
| ! | TACATATGCTACTTGTATTC+AGG | - | chr7.2:6450687-6450706 | MS.gene22986:intron | 30.0% |
| ! | TTAATGCACAGTTTTCATTG+AGG | - | chr7.2:6450336-6450355 | MS.gene22986:intron | 30.0% |
| !! | AAGCTAACTATAGTTGATAG+CGG | - | chr7.2:6449856-6449875 | MS.gene22986:CDS | 30.0% |
| !! | GCTAACAAACTAGCTTATTT+TGG | - | chr7.2:6449824-6449843 | MS.gene22986:intron | 30.0% |
| AAAATAATCCAGGCTCTGTT+TGG | - | chr7.2:6449786-6449805 | MS.gene22986:intron | 35.0% | |
| ACGAAGTGGTGTAAGTATAA+AGG | - | chr7.2:6450729-6450748 | MS.gene22986:intron | 35.0% | |
| CGAAGTGGTGTAAGTATAAA+GGG | - | chr7.2:6450730-6450749 | MS.gene22986:intron | 35.0% | |
| GAAAACTGTGCATTAATGAC+AGG | + | chr7.2:6450332-6450351 | None:intergenic | 35.0% | |
| GAAAGTGACAATTACCAAAC+AGG | - | chr7.2:6450068-6450087 | MS.gene22986:intron | 35.0% | |
| GAAGTGGTGTAAGTATAAAG+GGG | - | chr7.2:6450731-6450750 | MS.gene22986:intron | 35.0% | |
| GGATTTCATCCTTTGAACAT+TGG | - | chr7.2:6449657-6449676 | MS.gene22986:intron | 35.0% | |
| GTGTAAGTATAAAGGGGAAA+AGG | - | chr7.2:6450737-6450756 | MS.gene22986:intron | 35.0% | |
| TAGCTAAATTAGAACGGGAT+AGG | - | chr7.2:6450257-6450276 | MS.gene22986:intron | 35.0% | |
| TGTCTTATAATCTCGTCTGT+TGG | + | chr7.2:6450106-6450125 | None:intergenic | 35.0% | |
| TTATAATCTCGTCTGTTGGA+TGG | + | chr7.2:6450102-6450121 | None:intergenic | 35.0% | |
| TTCTCATCATCTTCATCTTC+AGG | - | chr7.2:6449271-6449290 | MS.gene22986:CDS | 35.0% | |
| TTTCTTAGATCAAGGGAAGT+TGG | - | chr7.2:6451406-6451425 | MS.gene22986:CDS | 35.0% | |
| ! | ATGCTTGATAACTTCAGCTT+CGG | + | chr7.2:6449423-6449442 | None:intergenic | 35.0% |
| ! | TGTTGGAGATGTAGATTTTG+AGG | - | chr7.2:6451506-6451525 | MS.gene22986:intron | 35.0% |
| !! | AGAATGAGGAGCATTTACTT+TGG | + | chr7.2:6449730-6449749 | None:intergenic | 35.0% |
| !! | GAATGAGGAGCATTTACTTT+GGG | + | chr7.2:6449729-6449748 | None:intergenic | 35.0% |
| !! | TATTTTTACCAAACAGAGCC+TGG | + | chr7.2:6449797-6449816 | None:intergenic | 35.0% |
| !!! | CTAGCTTATTTTGGATGACT+TGG | - | chr7.2:6449833-6449852 | MS.gene22986:intron | 35.0% |
| !!! | GCTATATTTTCTGGAGTATG+AGG | + | chr7.2:6451343-6451362 | None:intergenic | 35.0% |
| AAATGACTCTTCGCATGAGT+AGG | + | chr7.2:6450452-6450471 | None:intergenic | 40.0% | |
| AAGGGAAGTTGGATAAAACC+TGG | - | chr7.2:6451417-6451436 | MS.gene22986:CDS | 40.0% | |
| AAGTGACTCACCATGTACAT+TGG | + | chr7.2:6449468-6449487 | None:intergenic | 40.0% | |
| ACTTGTGTGTGAATGAGCAA+TGG | + | chr7.2:6450839-6450858 | None:intergenic | 40.0% | |
| AGCAACATTGTGACTGTCAT+TGG | + | chr7.2:6451582-6451601 | None:intergenic | 40.0% | |
| AGTGACTCACCATGTACATT+GGG | + | chr7.2:6449467-6449486 | None:intergenic | 40.0% | |
| ATCAAGATTGTCAAGAGAGC+TGG | + | chr7.2:6451212-6451231 | None:intergenic | 40.0% | |
| ATCCATCAACATCCTTCTCA+AGG | + | chr7.2:6449641-6449660 | None:intergenic | 40.0% | |
| ATGTGAGTGGAATTCATCGA+GGG | + | chr7.2:6450167-6450186 | None:intergenic | 40.0% | |
| CATAGGAACCTAAGTGTTTG+TGG | - | chr7.2:6451107-6451126 | MS.gene22986:CDS | 40.0% | |
| CGTATTTCTCAGAGAGGATA+CGG | + | chr7.2:6449189-6449208 | None:intergenic | 40.0% | |
| CTTGAACTATTGTCACGAAG+TGG | - | chr7.2:6450715-6450734 | MS.gene22986:intron | 40.0% | |
| GCTTCACGTATGATATCTTC+TGG | + | chr7.2:6450865-6450884 | None:intergenic | 40.0% | |
| TATAACCTGCCTTCCTAGTT+GGG | + | chr7.2:6451482-6451501 | None:intergenic | 40.0% | |
| TATTGTAACAACCTTCCCAC+AGG | + | chr7.2:6450567-6450586 | None:intergenic | 40.0% | |
| TGAGAATCTCGCGAGTAATT+CGG | + | chr7.2:6449257-6449276 | None:intergenic | 40.0% | |
| ! | AAGCATCTAAAGTTGCTGGT+TGG | - | chr7.2:6451529-6451548 | MS.gene22986:intron | 40.0% |
| ! | CGTATCCTCTCTGAGAAATA+CGG | - | chr7.2:6449187-6449206 | MS.gene22986:CDS | 40.0% |
| ! | CTTCGGAAATTTGTTCAGGA+AGG | + | chr7.2:6449406-6449425 | None:intergenic | 40.0% |
| ! | GATATTGTTATTGCAGCAGC+AGG | - | chr7.2:6450886-6450905 | MS.gene22986:intron | 40.0% |
| ! | GTTGGTAGAAGCAACATAGT+CGG | - | chr7.2:6450769-6450788 | MS.gene22986:intron | 40.0% |
| ! | TCAGCTTCGGAAATTTGTTC+AGG | + | chr7.2:6449410-6449429 | None:intergenic | 40.0% |
| !! | AGAAAAGCTTGCGCTGATTT+GGG | - | chr7.2:6449359-6449378 | MS.gene22986:intron | 40.0% |
| !! | ATTCTGTTGATGACCCAACT+AGG | - | chr7.2:6451466-6451485 | MS.gene22986:intron | 40.0% |
| !! | GCTTTTGAAAGCAGATGCTA+CGG | - | chr7.2:6450810-6450829 | MS.gene22986:intron | 40.0% |
| AAGGCAGGTTATAGGCTTGT+TGG | - | chr7.2:6451489-6451508 | MS.gene22986:intron | 45.0% | |
| AATCTCGCGAGTAATTCGGA+GGG | + | chr7.2:6449253-6449272 | None:intergenic | 45.0% | |
| ACATCTATTACTGCAGCTCC+AGG | + | chr7.2:6451438-6451457 | None:intergenic | 45.0% | |
| AGATCGGATTGTTTGTGCCA+CGG | + | chr7.2:6449149-6449168 | None:intergenic | 45.0% | |
| AGCCTTGAGAAGGATGTTGA+TGG | - | chr7.2:6449636-6449655 | MS.gene22986:intron | 45.0% | |
| ATTGGCAAGCTTGCCATGAA+AGG | - | chr7.2:6449675-6449694 | MS.gene22986:intron | 45.0% | |
| CAACTAGGAAGGCAGGTTAT+AGG | - | chr7.2:6451481-6451500 | MS.gene22986:intron | 45.0% | |
| CATGTGAGTGGAATTCATCG+AGG | + | chr7.2:6450168-6450187 | None:intergenic | 45.0% | |
| CTATAACCTGCCTTCCTAGT+TGG | + | chr7.2:6451483-6451502 | None:intergenic | 45.0% | |
| GAATTCATCGAGGGTCTGTT+TGG | + | chr7.2:6450158-6450177 | None:intergenic | 45.0% | |
| GACTGAAATCAGCCTTGAGA+AGG | - | chr7.2:6449626-6449645 | MS.gene22986:intron | 45.0% | |
| GACTTGCAGTGGTGATAGTA+GGG | - | chr7.2:6449300-6449319 | MS.gene22986:CDS | 45.0% | |
| GCAAGCTTGCCAATGTTCAA+AGG | + | chr7.2:6449669-6449688 | None:intergenic | 45.0% | |
| GGAGCTGCAGTAATAGATGT+TGG | - | chr7.2:6451438-6451457 | MS.gene22986:CDS | 45.0% | |
| GTGACTCACCATGTACATTG+GGG | + | chr7.2:6449466-6449485 | None:intergenic | 45.0% | |
| TGTACGTTCTTGAACGGCAT+GGG | + | chr7.2:6450620-6450639 | None:intergenic | 45.0% | |
| TTGTACGTTCTTGAACGGCA+TGG | + | chr7.2:6450621-6450640 | None:intergenic | 45.0% | |
| ! | ACAACCTTCCCACAGGTTTT+AGG | + | chr7.2:6450560-6450579 | None:intergenic | 45.0% |
| ! | AGCATTTACTTTGGGAGTGC+AGG | + | chr7.2:6449721-6449740 | None:intergenic | 45.0% |
| ! | CAACCTTCCCACAGGTTTTA+GGG | + | chr7.2:6450559-6450578 | None:intergenic | 45.0% |
| ! | CATCTTCATCTTCAGGTTCC+AGG | - | chr7.2:6449278-6449297 | MS.gene22986:CDS | 45.0% |
| ! | GCATTTACTTTGGGAGTGCA+GGG | + | chr7.2:6449720-6449739 | None:intergenic | 45.0% |
| !! | AACCTTCCCACAGGTTTTAG+GGG | + | chr7.2:6450558-6450577 | None:intergenic | 45.0% |
| !! | GAGAAAAGCTTGCGCTGATT+TGG | - | chr7.2:6449358-6449377 | MS.gene22986:intron | 45.0% |
| !! | GAGGAAGCATCTAAAGTTGC+TGG | - | chr7.2:6451525-6451544 | MS.gene22986:intron | 45.0% |
| !! | TGTTGATGACCCAACTAGGA+AGG | - | chr7.2:6451470-6451489 | MS.gene22986:intron | 45.0% |
| !!! | GTTTATTTTTTTATAATATA+GGG | - | chr7.2:6450187-6450206 | MS.gene22986:intron | 5.0% |
| !!! | TGTTTATTTTTTTATAATAT+AGG | - | chr7.2:6450186-6450205 | MS.gene22986:intron | 5.0% |
| AAAGGGGAAAAGGGCAGTTG+TGG | - | chr7.2:6450747-6450766 | MS.gene22986:intron | 50.0% | |
| AACGCTGACCCCAATGTACA+TGG | - | chr7.2:6449455-6449474 | MS.gene22986:intron | 50.0% | |
| ACTATCACCACTGCAAGTCC+TGG | + | chr7.2:6449299-6449318 | None:intergenic | 50.0% | |
| ATCTCGCGAGTAATTCGGAG+GGG | + | chr7.2:6449252-6449271 | None:intergenic | 50.0% | |
| CACGGCTTTGCCGTCAATTA+CGG | + | chr7.2:6449131-6449150 | None:intergenic | 50.0% | |
| CATCGAGGGTCTGTTTGGTA+AGG | + | chr7.2:6450153-6450172 | None:intergenic | 50.0% | |
| CCTTGCCGTATTTCTCAGAG+AGG | + | chr7.2:6449195-6449214 | None:intergenic | 50.0% | |
| GAATCTCGCGAGTAATTCGG+AGG | + | chr7.2:6449254-6449273 | None:intergenic | 50.0% | |
| GGAACTGGCCACAAACACTT+AGG | + | chr7.2:6451118-6451137 | None:intergenic | 50.0% | |
| GGACTTGCAGTGGTGATAGT+AGG | - | chr7.2:6449299-6449318 | MS.gene22986:CDS | 50.0% | |
| GGATGGAGATCGAACCTGTT+TGG | + | chr7.2:6450085-6450104 | None:intergenic | 50.0% | |
| GGTGATAGTAGGGAACAGAC+AGG | - | chr7.2:6449310-6449329 | MS.gene22986:CDS | 50.0% | |
| GGTTGGATTACTCCTGTTCC+TGG | - | chr7.2:6451546-6451565 | MS.gene22986:intron | 50.0% | |
| GTGATCCCCCTAAAACCTGT+GGG | - | chr7.2:6450549-6450568 | MS.gene22986:intron | 50.0% | |
| TGGATTACTCCTGTTCCTGG+AGG | - | chr7.2:6451549-6451568 | MS.gene22986:intron | 50.0% | |
| TGTGATCCCCCTAAAACCTG+TGG | - | chr7.2:6450548-6450567 | MS.gene22986:intron | 50.0% | |
| TGTTATTGCAGCAGCAGGAC+AGG | - | chr7.2:6450891-6450910 | MS.gene22986:intron | 50.0% | |
| ! | CCTCTCTGAGAAATACGGCA+AGG | - | chr7.2:6449192-6449211 | MS.gene22986:CDS | 50.0% |
| !!! | ACCTTCCCACAGGTTTTAGG+GGG | + | chr7.2:6450557-6450576 | None:intergenic | 50.0% |
| AGAGAGGATACGGACCTCGT+CGG | + | chr7.2:6449179-6449198 | None:intergenic | 55.0% | |
| AGCAGCAGGACAGGCAAAGA+TGG | - | chr7.2:6450900-6450919 | MS.gene22986:intron | 55.0% | |
| CCTCGTCGGCGATTTCAGAT+CGG | + | chr7.2:6449165-6449184 | None:intergenic | 55.0% | |
| CGTAATTGACGGCAAAGCCG+TGG | - | chr7.2:6449129-6449148 | MS.gene22986:CDS | 55.0% | |
| GAGCGGATCTCTGCCTTTCA+TGG | + | chr7.2:6449691-6449710 | None:intergenic | 55.0% | |
| GATGACCCAACTAGGAAGGC+AGG | - | chr7.2:6451474-6451493 | MS.gene22986:intron | 55.0% | |
| GGAGTGCAGGGAACAAAGAG+CGG | + | chr7.2:6449708-6449727 | None:intergenic | 55.0% | |
| GGCTTTGCCGTCAATTACGG+TGG | + | chr7.2:6449128-6449147 | None:intergenic | 55.0% | |
| GGGAAAAGGGCAGTTGTGGT+TGG | - | chr7.2:6450751-6450770 | MS.gene22986:intron | 55.0% | |
| GTCATTGGACCTACACCTCC+AGG | + | chr7.2:6451567-6451586 | None:intergenic | 55.0% | |
| TCAGGTTCCAGGACTTGCAG+TGG | - | chr7.2:6449289-6449308 | MS.gene22986:CDS | 55.0% | |
| TCCCCCTAAAACCTGTGGGA+AGG | - | chr7.2:6450553-6450572 | MS.gene22986:intron | 55.0% | |
| TCTCGCGAGTAATTCGGAGG+GGG | + | chr7.2:6449251-6449270 | None:intergenic | 55.0% | |
| ! | ACTCCTGTTCCTGGAGGTGT+AGG | - | chr7.2:6451555-6451574 | MS.gene22986:intron | 55.0% |
| GGACCTACACCTCCAGGAAC+AGG | + | chr7.2:6451561-6451580 | None:intergenic | 60.0% | |
| ! | CCGATCTGAAATCGCCGACG+AGG | - | chr7.2:6449162-6449181 | MS.gene22986:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 6449121 | 6451650 | 6449121 | ID=MS.gene22986 |
| chr7.2 | mRNA | 6449121 | 6451650 | 6449121 | ID=MS.gene22986.t1;Parent=MS.gene22986 |
| chr7.2 | exon | 6451558 | 6451650 | 6451558 | ID=MS.gene22986.t1.exon1;Parent=MS.gene22986.t1 |
| chr7.2 | CDS | 6451558 | 6451650 | 6451558 | ID=cds.MS.gene22986.t1;Parent=MS.gene22986.t1 |
| chr7.2 | exon | 6451295 | 6451478 | 6451295 | ID=MS.gene22986.t1.exon2;Parent=MS.gene22986.t1 |
| chr7.2 | CDS | 6451295 | 6451478 | 6451295 | ID=cds.MS.gene22986.t1;Parent=MS.gene22986.t1 |
| chr7.2 | exon | 6451040 | 6451197 | 6451040 | ID=MS.gene22986.t1.exon3;Parent=MS.gene22986.t1 |
| chr7.2 | CDS | 6451040 | 6451197 | 6451040 | ID=cds.MS.gene22986.t1;Parent=MS.gene22986.t1 |
| chr7.2 | exon | 6449850 | 6450062 | 6449850 | ID=MS.gene22986.t1.exon4;Parent=MS.gene22986.t1 |
| chr7.2 | CDS | 6449850 | 6450062 | 6449850 | ID=cds.MS.gene22986.t1;Parent=MS.gene22986.t1 |
| chr7.2 | exon | 6449121 | 6449357 | 6449121 | ID=MS.gene22986.t1.exon5;Parent=MS.gene22986.t1 |
| chr7.2 | CDS | 6449121 | 6449357 | 6449121 | ID=cds.MS.gene22986.t1;Parent=MS.gene22986.t1 |
| Gene Sequence |
| Protein sequence |
